Metagenome / Metatranscriptome Family F087854

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Overview

Basic Information
Family ID	F087854
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	99 residues
Representative Sequence	MSETPVPRDPGRDENPPGVPVGSGERPRLGSPDWRLVPQSPDWDQAYLAAIAGDEDPGDPDEYEDPDNAPPPGLEDAELEALLAGAREETAARARAA
Number of Associated Samples	87
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	89.42 %
% of genes near scaffold ends (potentially truncated)	90.00 %
% of genes from short scaffolds (< 2000 bps)	86.36 %
Associated GOLD sequencing projects	87
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.29

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (64.545 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (63.636 % of family members)
Environment Ontology (ENVO)	Unclassified (64.545 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (60.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 28.80% β-sheet: 0.00% Coil/Unstructured: 71.20%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.29
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.29
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF13302	Acetyltransf_3	12.73
PF05977	MFS_3	4.55
PF00535	Glycos_transf_2	3.64
PF00106	adh_short	2.73
PF13561	adh_short_C2	1.82
PF00903	Glyoxalase	1.82
PF06737	Transglycosylas	1.82
PF13845	Septum_form	1.82
PF00719	Pyrophosphatase	0.91
PF05960	DUF885	0.91
PF02616	SMC_ScpA	0.91
PF04972	BON	0.91
PF00498	FHA	0.91
PF04264	YceI	0.91
PF01476	LysM	0.91
PF13358	DDE_3	0.91
PF00144	Beta-lactamase	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG2814	Predicted arabinose efflux permease AraJ, MFS family	Carbohydrate transport and metabolism [G]	4.55
COG0221	Inorganic pyrophosphatase	Energy production and conversion [C]	0.91
COG1354	Chromatin segregation and condensation protein Rec8/ScpA/Scc1, kleisin family	Replication, recombination and repair [L]	0.91
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.91
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.91
COG2353	Polyisoprenoid-binding periplasmic protein YceI	General function prediction only [R]	0.91
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.91
COG4805	Uncharacterized conserved protein, DUF885 family	Function unknown [S]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.55 %
All Organisms	root	All Organisms	35.45 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.55 %
cellular organisms	root	All Organisms → cellular organisms	35.45 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.55 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	35.45 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.55 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	25.45 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.55 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	23.64 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.55 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	14.55 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.55 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	10.00 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.55 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	9.09 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.91 %
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.55 %
Streptosporangium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Streptosporangium	6.36 %
Nonomuraea	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Nonomuraea	1.82 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.91 %
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.55 %
unclassified Streptosporangium	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Streptosporangium → unclassified Streptosporangium	6.36 %
Nonomuraea antri	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Nonomuraea → Nonomuraea antri	1.82 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	0.91 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.55 %
Streptosporangium sp. 'caverna'	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Streptosporangium → unclassified Streptosporangium → Streptosporangium sp. 'caverna'	6.36 %
Nonomuraea antri	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Nonomuraea → Nonomuraea antri	1.82 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	0.91 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001593\|JGI12635J15846_10673007	Not Available	598	Open in IMG/M
3300004080\|Ga0062385_11016374	All Organisms → cellular organisms → Bacteria	557	Open in IMG/M
3300004080\|Ga0062385_11019348	All Organisms → cellular organisms → Bacteria	557	Open in IMG/M
3300005537\|Ga0070730_10015753	All Organisms → cellular organisms → Bacteria	6018	Open in IMG/M
3300005591\|Ga0070761_10736843	Not Available	618	Open in IMG/M
3300005764\|Ga0066903_100836044	All Organisms → cellular organisms → Bacteria	1654	Open in IMG/M
3300010048\|Ga0126373_10861826	All Organisms → cellular organisms → Bacteria	969	Open in IMG/M
3300010048\|Ga0126373_10983515	Not Available	909	Open in IMG/M
3300010366\|Ga0126379_12966723	Not Available	568	Open in IMG/M
3300010880\|Ga0126350_12277280	All Organisms → cellular organisms → Bacteria	666	Open in IMG/M
3300016294\|Ga0182041_11628617	Not Available	596	Open in IMG/M
3300016319\|Ga0182033_10265759	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Streptosporangium → unclassified Streptosporangium → Streptosporangium sp. 'caverna'	1401	Open in IMG/M
3300016357\|Ga0182032_10375092	Not Available	1144	Open in IMG/M
3300016387\|Ga0182040_10845086	Not Available	756	Open in IMG/M
3300016404\|Ga0182037_10683062	Not Available	878	Open in IMG/M
3300016422\|Ga0182039_12011109	Not Available	532	Open in IMG/M
3300016445\|Ga0182038_10296306	Not Available	1320	Open in IMG/M
3300017821\|Ga0187812_1215579	Not Available	612	Open in IMG/M
3300017924\|Ga0187820_1284338	Not Available	540	Open in IMG/M
3300017933\|Ga0187801_10377111	Not Available	587	Open in IMG/M
3300017937\|Ga0187809_10378494	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Streptosporangium → unclassified Streptosporangium → Streptosporangium sp. 'caverna'	536	Open in IMG/M
3300017937\|Ga0187809_10429512	Not Available	508	Open in IMG/M
3300017942\|Ga0187808_10295864	Not Available	729	Open in IMG/M
3300017942\|Ga0187808_10318900	Not Available	702	Open in IMG/M
3300017942\|Ga0187808_10553347	Not Available	535	Open in IMG/M
3300017955\|Ga0187817_10478021	Not Available	795	Open in IMG/M
3300017970\|Ga0187783_11276945	Not Available	529	Open in IMG/M
3300017973\|Ga0187780_10643432	Not Available	763	Open in IMG/M
3300017993\|Ga0187823_10267068	Not Available	584	Open in IMG/M
3300017993\|Ga0187823_10342468	Not Available	530	Open in IMG/M
3300017999\|Ga0187767_10151423	Not Available	695	Open in IMG/M
3300018058\|Ga0187766_10699071	Not Available	700	Open in IMG/M
3300018058\|Ga0187766_10791280	Not Available	662	Open in IMG/M
3300020583\|Ga0210401_10515610	Not Available	1058	Open in IMG/M
3300021171\|Ga0210405_10007323	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	9711	Open in IMG/M
3300021171\|Ga0210405_10182255	Not Available	1665	Open in IMG/M
3300021180\|Ga0210396_10667429	Not Available	900	Open in IMG/M
3300021401\|Ga0210393_11562550	Not Available	524	Open in IMG/M
3300021405\|Ga0210387_10230833	Not Available	1614	Open in IMG/M
3300027568\|Ga0208042_1136808	Not Available	616	Open in IMG/M
3300027812\|Ga0209656_10208047	All Organisms → cellular organisms → Bacteria	944	Open in IMG/M
3300027884\|Ga0209275_10310304	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	877	Open in IMG/M
3300030528\|Ga0210277_10934751	Not Available	549	Open in IMG/M
3300031543\|Ga0318516_10209620	Not Available	1126	Open in IMG/M
3300031543\|Ga0318516_10451765	Not Available	739	Open in IMG/M
3300031544\|Ga0318534_10546321	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Streptosporangium → unclassified Streptosporangium → Streptosporangium sp. 'caverna'	660	Open in IMG/M
3300031546\|Ga0318538_10019724	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2985	Open in IMG/M
3300031549\|Ga0318571_10056228	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1187	Open in IMG/M
3300031564\|Ga0318573_10574296	Not Available	607	Open in IMG/M
3300031668\|Ga0318542_10067891	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1661	Open in IMG/M
3300031679\|Ga0318561_10127510	All Organisms → cellular organisms → Bacteria	1356	Open in IMG/M
3300031679\|Ga0318561_10285337	Not Available	902	Open in IMG/M
3300031681\|Ga0318572_10302900	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Streptosporangium → unclassified Streptosporangium → Streptosporangium sp. 'caverna'	945	Open in IMG/M
3300031681\|Ga0318572_10797102	Not Available	562	Open in IMG/M
3300031713\|Ga0318496_10294655	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	895	Open in IMG/M
3300031713\|Ga0318496_10676266	Not Available	569	Open in IMG/M
3300031715\|Ga0307476_10299355	Not Available	1180	Open in IMG/M
3300031723\|Ga0318493_10888340	Not Available	504	Open in IMG/M
3300031748\|Ga0318492_10287957	Not Available	853	Open in IMG/M
3300031751\|Ga0318494_10020408	All Organisms → cellular organisms → Bacteria	3284	Open in IMG/M
3300031753\|Ga0307477_10367611	Not Available	988	Open in IMG/M
3300031765\|Ga0318554_10161949	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1271	Open in IMG/M
3300031765\|Ga0318554_10528194	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Streptosporangium → unclassified Streptosporangium → Streptosporangium sp. 'caverna'	667	Open in IMG/M
3300031768\|Ga0318509_10363301	Not Available	810	Open in IMG/M
3300031768\|Ga0318509_10738442	Not Available	546	Open in IMG/M
3300031769\|Ga0318526_10014237	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	2658	Open in IMG/M
3300031771\|Ga0318546_11082439	Not Available	564	Open in IMG/M
3300031777\|Ga0318543_10109195	Not Available	1194	Open in IMG/M
3300031779\|Ga0318566_10103836	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1396	Open in IMG/M
3300031781\|Ga0318547_10769721	Not Available	599	Open in IMG/M
3300031782\|Ga0318552_10018794	All Organisms → cellular organisms → Bacteria	3031	Open in IMG/M
3300031782\|Ga0318552_10200999	Not Available	1008	Open in IMG/M
3300031782\|Ga0318552_10741190	Not Available	501	Open in IMG/M
3300031793\|Ga0318548_10244190	Not Available	882	Open in IMG/M
3300031795\|Ga0318557_10283320	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Streptosporangium → unclassified Streptosporangium → Streptosporangium sp. 'caverna'	760	Open in IMG/M
3300031819\|Ga0318568_10359290	Not Available	906	Open in IMG/M
3300031821\|Ga0318567_10556217	Not Available	652	Open in IMG/M
3300031832\|Ga0318499_10007003	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3487	Open in IMG/M
3300031833\|Ga0310917_11195189	Not Available	506	Open in IMG/M
3300031845\|Ga0318511_10094047	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1268	Open in IMG/M
3300031845\|Ga0318511_10527043	Not Available	548	Open in IMG/M
3300031845\|Ga0318511_10536030	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	543	Open in IMG/M
3300031846\|Ga0318512_10404976	Not Available	686	Open in IMG/M
3300031859\|Ga0318527_10428332	Not Available	564	Open in IMG/M
3300031860\|Ga0318495_10529721	Not Available	513	Open in IMG/M
3300031880\|Ga0318544_10216480	Not Available	740	Open in IMG/M
3300031897\|Ga0318520_10107933	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1570	Open in IMG/M
3300031945\|Ga0310913_10944366	Not Available	606	Open in IMG/M
3300031945\|Ga0310913_10988778	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	590	Open in IMG/M
3300031946\|Ga0310910_10165155	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1702	Open in IMG/M
3300032009\|Ga0318563_10214965	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1037	Open in IMG/M
3300032025\|Ga0318507_10298205	Not Available	701	Open in IMG/M
3300032039\|Ga0318559_10024545	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2345	Open in IMG/M
3300032043\|Ga0318556_10339581	Not Available	785	Open in IMG/M
3300032043\|Ga0318556_10415505	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Streptosporangium → unclassified Streptosporangium → Streptosporangium sp. 'caverna'	704	Open in IMG/M
3300032044\|Ga0318558_10684020	Not Available	513	Open in IMG/M
3300032054\|Ga0318570_10429347	Not Available	603	Open in IMG/M
3300032066\|Ga0318514_10003567	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5990	Open in IMG/M
3300032066\|Ga0318514_10146141	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1224	Open in IMG/M
3300032068\|Ga0318553_10308014	Not Available	829	Open in IMG/M
3300032068\|Ga0318553_10577190	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Nonomuraea → Nonomuraea antri	589	Open in IMG/M
3300032090\|Ga0318518_10686129	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Nonomuraea → Nonomuraea antri	521	Open in IMG/M
3300032261\|Ga0306920_101745216	Not Available	880	Open in IMG/M
3300033290\|Ga0318519_10319882	All Organisms → cellular organisms → Bacteria	911	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	87.27%
Aquatic	Environmental → Aquatic	12.73%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	87.27%
Freshwater	Environmental → Aquatic → Freshwater	12.73%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	78.18%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	12.73%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	5.45%
Loam	Environmental → Terrestrial → Soil → Loam	3.64%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	72.73%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	10.00%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	5.45%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	5.45%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.64%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	2.73%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	63.64%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	10.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	7.27%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	5.45%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.73%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.73%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.82%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.82%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.91%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.91%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.91%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.91%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010880	Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017821	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_2	Environmental	Open in IMG/M
3300017924	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017937	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4	Environmental	Open in IMG/M
3300017942	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300017993	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_3	Environmental	Open in IMG/M
3300017999	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_10_MG	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300027568	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300030528	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO135-VCO084SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300032008	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12635J15846_106730072	3300001593	Forest Soil	MPSSSDRGPSGRDEDPSGMPAGPGDRPSLGSPGWRLVPQSPDWDEAYLAAIAEDEDPGDPEEYEDPDHAPPAGLDDHELAVLLAE
Ga0062385_110163741	3300004080	Bog Forest Soil	MSETPVPRDPRPDGDPSGTPAGPGDRPSLGSPGWRLVPQSPDWDEAHLAAIAEDEDPGGPEEYEDPDNAPPAGLDDHELAALLAEAREATADQARAAEAAARLGQ
Ga0062385_110193481	3300004080	Bog Forest Soil	MSETPVPPDPGRDEDAPGTPSGPGDHPSLGAPGWRLVPCSPDWDEAYLAAMAEDEDPGDADLYEDPDNAPPAGLDDAELDTLIAEARENAEDQ
Ga0070730_100157535	3300005537	Surface Soil	MSETPVPRDPGETTTCPGARGPADCPWLGSPEWRLVPESPDWPPCMDDAHAQDPGDPGEYEDPDSAPPGLDDAQLVVLLAEARAGAATQQAISTTRIRRL*
Ga0070761_107368432	3300005591	Soil	MREAPDPQDPGRDETPPGTPAGPGDHPGFGSPRWRLVPQSPDWPDGEACAPDEDPGDLEEYEYEDPDNAPPAGLDDRELAALIAAADEVTADYAR
Ga0066903_1008360442	3300005764	Tropical Forest Soil	MSETPVPSGPGRDEDPSGVPAGPGDQPALGSPHWQLVPQSPDWDEAYLAGAAGDEDPGDPDEYEDPDNAPPRGLEDAELEALLSEAGEVTAAQARAAGDAA
Ga0126373_108618263	3300010048	Tropical Forest Soil	MSETPVPRDPGQDDDLPSVPAGPGDRPRLGSPDWRLVPQSPDWPDWMDDARAGDEYPGDPDEYQDPGSAPPPGLDDVELEALLAEARQDTAARASAAEA
Ga0126373_109835152	3300010048	Tropical Forest Soil	MFFAIVFYSKVILPNGSWFMSEIPASSGPGRDKDPSGRPAGPGDHPSLGSPRWQLVPQHPDWDPAYLEAIAEDEDPGDLEEYEDPDNAPPAGLNDAQLAALIAEARQTGRAITADQSRLAESLPGE*
Ga0126379_129667231	3300010366	Tropical Forest Soil	VLFAIVFDSKVILPNGSWFMSETPVPSGPGRDEDPSGVPAGPGDQPALGSPHWQLVPQSPDWDEAYLAARADDEYPGDLDQYEDPDNAPPAGLDGAELAALI
Ga0126350_122772802	3300010880	Boreal Forest Soil	MSETPVHRHPGQDGDPSGMPAGPGDHPSLGSPRWRLVPQSPDWDEAYLAAMADDEDPGDAGEYEDPDNAPPAGLDDYELAALIAEAREITADQARAAEAAARL
Ga0182041_116286171	3300016294	Soil	MAAWSDRGPGGRDEDPSDLPDLPAGSGDRPSLGSPEWRLVPQSADWPEWMDEARAHDEDPGDLEEYEDPDSAPPPGLDDAQLVALIAEARQAAEDRAGAEAVAA
Ga0182033_102657592	3300016319	Soil	MSDPPVPRDPGQDDDPPGVPAGLGDRPWLGSPNWQLVPQSPDWPEWMDQDAHAHDEYPGDPDEYQDPDNAPPPGLDDNQLAALMAEAHEITAKQARAA
Ga0182032_103750921	3300016357	Soil	MSETPVPGDPGRDENPPGVPAGPGGYPSLGSPDWQLVPCRPDWDEAYLAAMADDEDPGDQDLYEDPDNAPPFGLDDAQLTALIAEAREVITDQARAAEFASRTGHTAVLAA
Ga0182040_108450861	3300016387	Soil	MKGHSSGRVVVMSETPVPRDPGRDENPPDVPAGPGDRPRLGSPDWRLVPQSPDWHPAYLAAMAGDADPGDPDEYQDPDNAPPTGLEDAELEALLAEAREESAA
Ga0182037_106830621	3300016404	Soil	MSDTPVPRDPGRDDNPPGVPAGPGDRPSLGSPEWRLVPQSADWPEWMDEARAHDEDPGDLEEYEDPDSAPPPGLDDAQLVALIAEARQAAEDRAGAEAVAARLGHTAVLAAV
Ga0182039_120111091	3300016422	Soil	MSETPVPSGPGRDEDPPGVPAGPGDHPALGSPHWQLVPQSPDWDEAYLAARAEDEYPGDPEEDQDPDNAPPAGLDDAQLAALITEARQNAREIT
Ga0182038_102963062	3300016445	Soil	MSETPVPRDPGRDENLPGVPVGSGERPRLGSPDWRLVPQSPDWDQAYLAAIAGDEDPGDPDEYEDPDNAPPPGLGDAELEALLAGAREETAARARAAGEAARL
Ga0187812_12155791	3300017821	Freshwater Sediment	MVLDIMFDDKTIYQNGSEYMSETPVPRDPGPDDGVPAGPGDHPRLGSPDWTLVPQSPDWDEAWLAARAEDEDPGDREEYEDPDNAPPPGLDDNQLAEL
Ga0187820_12843381	3300017924	Freshwater Sediment	MTQTPAPRDPAPDGDPSGVPAGPGDHPWLGSPDWRLVPQSPDWDEAYLAAVADDEYPGDPEEYEDPDHAPPPGLDDAELEALIAEAL
Ga0187801_103771112	3300017933	Freshwater Sediment	MRAEPVSSDPGRGEDPSGVPAGPGAHPEFGSSDWRLVPCSPDWPEWMEDEARLADEYPGDLEEYEDPESAPPPGLDDDQLAALIV
Ga0187809_103784941	3300017937	Freshwater Sediment	MSETPVPRDPGQDDNLPGMPAGSGDRPWLGSPDWQLVPQSPDWPEWMDDGAHADDEEPGDLDLYQDPDNAPLPGLDDAQLAALIAEAREAAEDHARAAAVM
Ga0187809_104295121	3300017937	Freshwater Sediment	MHQEPVPRDPGRDENPSEVPAGSGNHPWLGSPDWRLVPQSPDWDEAYLAVRAEDEYPGDLEEYEDPDNAPPSLDDAELEALIAEAREIAADHARAAEAA
Ga0187808_102958642	3300017942	Freshwater Sediment	MTETPVPRDPGRDEDPSGLPAGPGDHPRLGSPDWRPVPCTPGWLDEEAYLADEYPGDPDEYEDPDNAPPPGLDDDQLAEMIAEAREITVGQARAAD
Ga0187808_103189002	3300017942	Freshwater Sediment	MSETPVPSGPGPDGDPSGEPAGPGERSWLGSPGWRLVPQSPDWDEAWLAARAEDEDPGDPDSYEDPDNAPPPGLDDNQLAELIAEAREVT
Ga0187808_105533471	3300017942	Freshwater Sediment	MSETPVSRDSGQDGDLPGVPAGPGDRPRLGSPDWRLVPQSADWPEWMGADAHAGDADPGDLDDYQDPDSAPPPGLDDAELEALLAEAREAAGDQARYLEVNLPGTRAA
Ga0187817_104780211	3300017955	Freshwater Sediment	MSETPVPRDPGQDGHPPGVPAGPGDRPRLGSPGWQLVPQRPDWPDWMDDAHAEDEDPGDLEEYQDPDNAPPAGLDDGELAALIAAAREA
Ga0187783_112769451	3300017970	Tropical Peatland	MGDTPVPQDPRRDEDAPGVPAGPDDYPSLGSPGWRLVPQSPDWPEWMDDDARAQDADPGDLDLYEDPDSAPPAALDDAELAALIAV
Ga0187780_106434322	3300017973	Tropical Peatland	MSETPVPRDPGRDDEPPGVPAGPGDRPRLGSPGWRLVPQGPDWPEWMDEDAHAEDEDPGDLDLYQDPDNAPPAGLDDAELAALLAEA
Ga0187823_102670682	3300017993	Freshwater Sediment	MTQTPAPRDPAPDGDPSGVPAGPGDHPWLGSPDWRLVPQSPDWDEAYLAAVADDEYPGDPEEYEDPDHAPPPGLDDAELEALIAEALEITADQVRAAEGAARSGHTAVLAAVGAVLAGRRGPGM
Ga0187823_103424681	3300017993	Freshwater Sediment	MHQEPVPADPGPDDLAADYPELGSPHWRLVPQSPDWPEWMDDAHAADEDPGDLEEYEDPDNAPPSGLDDEQLAVLLAEARQVTADQARAAKAA
Ga0187767_101514231	3300017999	Tropical Peatland	MSEIPVPRDPGRDDNPPGVPAGPGDRPRLGSPDWRLVPQSPDWPEWMDADAHAEDEDPGDPDLYQDPGNAPPPGLDDARLAALLAEAREITEDQARA
Ga0187766_106990711	3300018058	Tropical Peatland	MSETPVPRDPGRDDNPPGVPAGPGDRPSLGSRDWRLVPQRPDWPEWMDAGAHADDEDPGDPDEYQDPGSAPPPGLDDAQLEALLAEAEEITADQARAAEAA
Ga0187766_107912802	3300018058	Tropical Peatland	MSETPVPCDPGRDDIPLGVPAGPGDRPTLGSPGWRLVPPGPDWPGWMGEDAHAEDEDPGDLDEYQDPDCSPPPGLDDAELAALIAEAREAAEDRARAAAVMG
Ga0187772_108464261	3300018085	Tropical Peatland	VNQGPVPSGPGRDDDPSGVPAGPADFPELGSPRWQLAPCSPDWPEWMEDGVYLDDEDPGHPGEEDPDSAPPPGLDDAQLAALI
Ga0210401_105156102	3300020583	Soil	MSETPVPRDPGGTRTRPARPRGLGDHPSLGSPGWRLVPCSPDWDEAYLAAMAEDEYPGDADLYEDPDNAPPAGLDGAEMAALIAEARENAEERARADADAAARGMTGLLAMLGSMRRVS
Ga0210405_100073231	3300021171	Soil	MSEAPVPPDPGRDEDAPGTPSGPGDHPSLGAPGWRLVPCSPDWDEAYLAAMTEDEDPGDADLYEDPDNAPPAGLDDAELAALIAEARENA
Ga0210405_101822553	3300021171	Soil	MSETPVPRDPGGTRTRPARPRGLGDHPSLGSPGWRLVPCSPDWDEAYLAAMAEDEYPGDADLYEDPDNAPPAGLDGAEMAALIAEARENAEERARADVDASARGMTGLLAMLGSMRRVS
Ga0210396_106674291	3300021180	Soil	MSETPVPRDPGRDEDPPGTPAGPGDHPSLGAPGWRLVPCSPDWDEAYLAAMAEDEYPGDADLYGDPDNAPPAGLDDAELATLIAE
Ga0210393_115625501	3300021401	Soil	MSETPVPRDPGRDEDPPGLPAGPGDHPSLGSPEWRLVPCRPEWDEAYLAAIAEDEYPGDADLYEDPDNAPPAGLDDTELAALIVAARENAEERARADADAAA
Ga0210387_102308333	3300021405	Soil	MSETPVPPDPGRDEDAPGTPSGPGDHPSLEAPGWRLVPCSPDWDEAYLAAMTEDEYPGDADLYEDPDNAPPAGLDDAELATLIAEARENAEDQAWAAEAA
Ga0208042_11368081	3300027568	Peatlands Soil	MSESSDHGSSGRGEDPSGGPAVPGDRPWLGSPDWTLVPQSPDWDEAWLAARADDEYPGDLESYEDPDNAPPPGMDDDQLVALIAEAREVTAEQARAAELAARLGH
Ga0209656_102080471	3300027812	Bog Forest Soil	MFDRKVIHQNGTWYMHQESVPQNPGRDEDPSGMPPGPGDYPWLGSPDWRLVPQSPDWDEAYLAARAEDEYPGDLEEYEDPDNAPPSLDDAELAALIAEACQVGREITADQARAAAAWAIR
Ga0209275_103103042	3300027884	Soil	MPSSSDRGPSGRDEDPSGVPAGPGDRPSLGSPGWQLVPQSPDWDEAYLAAIADDEDPGDPEEYEDPGNAPPAGLDDTELAVLLAQAREMTE
Ga0210277_109347511	3300030528	Soil	MSASSDHEPSGRDEDPSGGAAGPGDYPSLGSPEWRLVPCRPEWDEAYLAAMAVDEDPGDPDLYEDPDNAPPADLDDAQLAALIAEARE
Ga0318516_102096202	3300031543	Soil	MKGHSFERVVVMSETPVPRDPGRVEDPPGVPAGPVDGPRLGSPDWRLVPQSPDWDPAYLAAMADDADPGDPDEYEDPDNAPPSGLEDAELEALLAEAREESAAQARATGEAARFGHTAA
Ga0318516_104517652	3300031543	Soil	MSETSVPRDPGRDEDPSGLPAGPGDHPSLGSPDWQLVPCRPDWDEAYLAAMADDEEPGDLDLYEDPDHSPPAGLDDAELTALITEAREMTAGQAETASAAACLRALA
Ga0318534_105463211	3300031544	Soil	MSETPVPSGPGRDEDPSGVPAGPGDHPALGSPDWQLAPQSPDWDEAYLAARAEDEYPGDPEEDQDPDNAPPAGLDDAQLAALITE
Ga0318538_100197245	3300031546	Soil	MSDPPVPRDPGQDDDPPGVPAGLGDRPWLGSPNWQLVPQSPDWPEWMDQDAHAHDEYPGDPDEYQDPDNAPPPGLDDNQLAALMAEAHEI
Ga0318571_100562281	3300031549	Soil	MSDPPVPRDPGQDDDPPGVPAGLGDRPWLGSPNWQLVPQSPDWPEWMDQDAHAHDEYPGDPDEYQDPDNAPPPGLDDNQLAALMAEAHEITAEQA
Ga0318573_105742961	3300031564	Soil	MSDTPVPRDPGRDDNPPGVPAGPGDRPSLGSPEWRLVPQSADWPEWMDEARAHDEDPGDLEEYEDPDSAPPPGLDDAQLVALIAEARQAAEDRAGAEAVAARLGHTAV
Ga0318542_100678911	3300031668	Soil	MSETPVPGDPGRDENPPGVPAGPGGYPSLGSPDWQLVPCRPDWDEAYLAAMADDEDPGDQDLYEDPDNAPPFGLDDAQLTALIAEAREVITDQARAAEFASRTG
Ga0318561_101275101	3300031679	Soil	MSETPVPGDPGRDENPPGVPAGPGGYPSLGSPDWQLVPCRPDWDEAYLAAMADDEDPGDQDLYEDPDNAPPFGLDDAQLTALIAEAREVITDQARAAEFASRTGQT
Ga0318561_102853371	3300031679	Soil	MSETPVPRDPGRDENPPGVPVGSGERPRLGSPDWRLVPQSPDWDQAYLAAIAGDEDPGDPDEYEDPDNAPPPGLEDAELEALLAGAREETAARARAARAAAR
Ga0318572_103029001	3300031681	Soil	MSETPVPSGPGRDEDPSGVPAGPGDHPALGSPDWQLAPQSPDWDEAYLAARAEDEYPGDPEEDQDPDNAPPAGLDDAQLAALITEARQNAREITADQTRRAE
Ga0318572_107971021	3300031681	Soil	MSETSVPRDAGRDEDPSGLPAGPGDHPSLGSPDWQLVPCRPDWDEAYLAAMADDEEPGDLDLYEDPDNSPPAGLDDAELTALITEAREMTAG
Ga0318496_102946551	3300031713	Soil	MSEAQVPRDPGRDEDPSGVPAGPGDHPRLGSPGWRLVPQRPDWDEAYLAARADDEYPGDPDLYEDPDNAPPPGLDDAELAVLLAEAGEAAADRARAAESAARLGH
Ga0318496_106762661	3300031713	Soil	MSETPVPRDPGRDEDPPGVPAGPGDRPRLGSPDWRLVPQSPDWDPAYLAAITDDEDPGDLYEYQDPDNAPPPGLEDAELEVLLAEAGEE
Ga0307476_102993551	3300031715	Hardwood Forest Soil	MSEAPVPPDPGRDEDAPGTPSGPGDHPSLGAPGWRLVPCSPDWDEAYLAAMTEDEYPGDADLYEDPDNAPPAGLDDAELATLIAEARENAEDQARAAEAAARLG
Ga0318493_108883401	3300031723	Soil	MHQEPVPQDPGRDDDPSGLPPGPGDRPSLGSPDWQLVPCRPDWDEAYLAALADDEDPGDLDLYEDPDNAPPAGLDDAELAALIAEAC
Ga0318492_102879571	3300031748	Soil	MSETPVPRDPGRDENLPGVPVGSGERPRLGSPDWRLVPQSPDWDQAYLAAIAGDEDPGDPDEYEDPDNAPPPGLEDAELEALLAGAREETAARA
Ga0318494_100204081	3300031751	Soil	MSETPVPRDPGRDENPPGVPVGSGERPRLGSPDWRLVPQSPDWDQAYLAAIAGDEDPGDPDEYEDPDNAPPPGLEDAELEALLAGAREETAARARAAGE
Ga0307477_103676112	3300031753	Hardwood Forest Soil	MSETPVPRDPGRDEDPPGTPAGPGDHPSLGAPGWRLVPCSPDWDEAYLAAMAEDEYPGDADLYEDPDNAPPAGLDDAELATLIAEARENAEDQAR
Ga0318554_101619491	3300031765	Soil	MSDPPVPRDPGQDDDPPGVPAGLGDRPWLGSPNWQLVPQSPDWPEWMDQDAHAHDEYPGDPDEYQDPDNAPPPGLDDNQLAALMAEAHEITAKQ
Ga0318554_105281941	3300031765	Soil	MSETPVPSGPGRDEDPSGVPAGPGDHPALGSPDWQLAPQSPDWDEAYLAARAEDEYPGDPEEDQDPDNAPPAGLDDAQLAALITEARQNAREI
Ga0318509_103633011	3300031768	Soil	MSETPVPGDPGRDENPPGVPAGPGGYPSLGSPDWQLDPCRPDWDEAYLAAMADDEDPGDQDLYEDPDNAPPFGLDDAQLTALIAEAREVITDQARAAEF
Ga0318509_107384421	3300031768	Soil	MSETPVPRDPGRDENLPGVPVGSGERPRLGSPDWRLVPQSPDWDQAYLAAIAGDEDPGDPDEYEDPDNAPPPGLEDAELEALLAGAREETAA
Ga0318526_100142373	3300031769	Soil	MSETPVPRDPGRDENPPGVPVGSGERPRLGSPDWRLVPQSPDWDQAYLAAIAGDEDPGDPDEYEDPDNAPPPGLEDAELEALLAGAREETAARARAAGEAARFGHTAVLA
Ga0318546_110824392	3300031771	Soil	MHQEPAPQDPGRDDDPSGLPPGPGDRPSLGSPDWQLVPCRPDWDEAYLAALGDDEDPGDLDLYEDPDNAPPAGLDDAELAALIAEAREITAD
Ga0318543_101091951	3300031777	Soil	MSETPVPRDPGRDENLPGVPVGSGERPRLGSPDWRLVPQSPDWDQAYLAAIAGDEDPGDPDEYEDPDNAPPPGLEDAELEALLAGAREETAARARAAGEAARFGH
Ga0318566_101038361	3300031779	Soil	MSDTPVSRDPGQDDNPPGVPAGPGDRPWLGSPDWQLAPQSPDWPEWMDEARAHDEDPGDLEEYEDPDSAPPPGLDDDQLAALIAEAREITAEQARAAEGWARLGYT
Ga0318547_107697211	3300031781	Soil	MHQEPAPQDPGRDDDPSGLPPGPGDRPSLGSPDWQLVPCRPDWDEAYLAALGDDEDPGDLDLYEDPDNAPPAGLDDAELAALIAEAREITADQVRAAEAAARFGHTAELA
Ga0318552_100187945	3300031782	Soil	MSETPVPRDPGRDENPPGVPVGSGERPRLGSPDWRLVPQSPDWDQAYLAAIAGDEDPGDPDEYEDPDNAPPPGLEDAELEALLAGAREETAARARAAGEA
Ga0318552_102009991	3300031782	Soil	MSDTPVPRDPGRDDNPPGVPAGPGDRPSLGSPEWRLVPQSADWPEWMDEARAHDEDPGDLEEYEDPDSAPPPGLDDAQLVALIAEARHPR
Ga0318552_107411901	3300031782	Soil	MSETPVPRDPGQDDNPPGVPAGPGDRPSLGSPHWRLVPQSPDWPEWMDEGAHADDEDPGDPDLYQDPDNAPPAGLDDAELEALLAEAREAAGDQARRRS
Ga0318548_102441902	3300031793	Soil	MSETPVPRDPGRDENPPGVPVGSGERPRLGSPDWRLVPQSPDWDQAYLAAIAGDEDPGDPDEYEDPDNAPPPGLEDAELEALLAGRRSP
Ga0318557_102833201	3300031795	Soil	MSDTPVSRDPGQDDNPPGVPAGPGDRPWLGSPDWQLAPQSPDWPEWMDEARAHDEDPGDLEEYEDPDSAPPPGLDDAQLVALIAEARQAAEDRAGAEAVAAR
Ga0318576_103641821	3300031796	Soil	MAAWSDRGPGGRDEDPSDLPDLPAGSGDRPSLGSPEWQLVPQSADWDETYLDAMADDEYPGDPDLYEDPDNAPPPGLDDAQLAALIAEARQVTEDQARAA
Ga0318497_103261511	3300031805	Soil	MAAWSDRGPGGRDEDPSDLPDLPAGSGDRPSLGSPEWQLVPQSADWDETYLDAMADDEYPGDPDLYEDPDNAPPPGLDDAQLAALIAEAREMTAEQARAAEVPARLGQTAV
Ga0318568_103592901	3300031819	Soil	MSETPVPRDPGRDENLPGVPVGSGERPRLGSPDWRLVPQSPDWDQAYLAAIAGDEDPGDPDEYEDPDNAPPPGLGDAELEALLAGAREETAARARAAGEAARLG
Ga0318568_105858341	3300031819	Soil	MAAWSDRGPGGRDEDPSDLPDLPAGSGDRPSLGSPEWQLVPQSADWDETYLDAMADDEYPGDPDLYEDPDNAPPPGLDDAQLAALIAEAREMTAEQARAAEVPARLG
Ga0318567_105562171	3300031821	Soil	MSETPVPRDPGQDDNPPGVPAGPGDRPSLGSPHWRLVPQSPDWPEWMDEGAHADDEDPGDPDLYQDPDNAPPAGLDDAELEALLAEAREAAGDQARAAAAMGRL
Ga0318499_100070031	3300031832	Soil	MSETPVPRDPGRDENLPGVPVGSGERPRLGSPDWRLVPQSPDWDQAYLAAIAGDEDPGDPDEYEDPDNAPPPGLGDAELEALLAGAR
Ga0310917_111951891	3300031833	Soil	MSETPVPRDPGQDDDLPGMPAGSGDRPRLGSPDWRLVPQSPDWDPAYLAAMADDEEPSDPDEYEDPDNAPPSGLEDAELEALLAEAREESAAQARATGE
Ga0318511_100940471	3300031845	Soil	MSDTPVSRDPGQDDNPPGVPAGPGDRPWLGSPDWQLAPQSPDWPEWMDEARAHDEDPGDLEEYEDPDSAPPPGLDDDQLAALIAEAREITAE
Ga0318511_105270431	3300031845	Soil	MSETPVPSGPGRDEDPPGVPAGPGDHPALGSPHWQLVPQSPDWDEAYLAARADDEDPGDLDLYEDPDNAPPPGLDDAELAVLLAEAGEAAADRARAAETAA
Ga0318511_105360302	3300031845	Soil	MSEAQVPRDPGRDEDPSGVPAGPGDHPRLGSPGWRLVPQRPDWDEAYLAARADDEYPGDPDLYEDPDNAPPPGLDDAELAVLLAEAGEAAADRARAAESAARL
Ga0318512_104049761	3300031846	Soil	MSDTPVPRDPGRDDNPPGVPAGPGDRPSLGSPEWRLVPQSADWPEWMDEARAHDEDPGDLEEYEDPDSAPPPGLDDDQLAALIAEAREITAEQARAAEGWARLGY
Ga0318527_104283321	3300031859	Soil	MSETPVPGDPGRDENPPGVPAGPGGYPSLGSPDWQLDPCRPDWDEAYLAAMADDEDPGDQDLYEDPDNAPPFGLDDAQLTALIAEAREVITDQARAAEFASRTGQTAV
Ga0318495_105297211	3300031860	Soil	MSETPVPRDPGRDEDPPGVPAGPGDRPRLGSPDWRLVPQSPDWDPAYLAAITDDEDPGDLYEYQDPDNAPPPGLEDAELEVLLAEAGEESAARARAAGE
Ga0318544_102164801	3300031880	Soil	MSETPVPRDPGRDENPPGVPVGSGERPRLGSPDWRLVPQSPDWDQAYLAAIAGEEDPGDPDLYEDPDNAPPPGLEDAELEALLAGAREETAARARAAG
Ga0318551_101939982	3300031896	Soil	MAAWSDRGPGGRDEDPSDLPDLPAGSGDRPSLGSPEWQLVPQSADWDETYLDAMADDEYPGDPDLYEDPDNAPPPGLDDAQLAALIAEAREMTAEQARAAEVPARL
Ga0318520_101079334	3300031897	Soil	MSETPVPGDPGRDENPPGVPAGPGGYPSLGSPDWQLDPCRPDWDEAYLAAMADDEDPGDQDLYEDPDNAPPFGLDDAQLTALIAEAREVITDQARAAEFA
Ga0310913_109443661	3300031945	Soil	MSETPVPRDPGRDENLPGVPVGSGERPRLGSPDWRLVPQSPDWDQAYLAAIAGDEDPGDPDEYEDPDNAPPPGLGDAELEALLA
Ga0310913_109887781	3300031945	Soil	MSDPPVPRDPGQDDDPPGVPAGLGDRPWLGSPNWQLVPQSPDWPEWMDQDAHADDEYPGDPDEYLDPDNAPPPGLDDNQLAALIAEAREITAEQARAAEGWARLGH
Ga0310910_101651552	3300031946	Soil	MSETPVPRDPGRDENLPGVPVGSGERPRLGSPDWRLVPQSPDWDQAYLAAIAGDEDPGDPDEYEDPDNAPPPGLGDAELEALLAGAREETAARARAAGEAARLGHTAVLA
Ga0318562_103251761	3300032008	Soil	MAAWSDRGPGGRDEDPSDLPDLPAGSGDRPSLGSPEWQLVPQSADWDETYLDAMADDEYPGDPDLYEDPDNAPPPGLDDAQLAALIAEAREMTAEQARAAEVPARLGQ
Ga0318563_102149652	3300032009	Soil	MSEAQVPRDPGRDEDPSGVPAGPGDHPRLGSPGWRLVPQRPDWDEAYLAARADDEYPGDPDLYEDPDNAPPPGLDDAELAVLLAEAGEAAA
Ga0318507_102982051	3300032025	Soil	MSETPVPRDPGRDEDPPGVPAGPGDGPRLGSPDWRLVPQSPDWDPAYLAAMAGDADPGDPDEYQDPDNAPPTGLEDAELEALLAEAREE
Ga0318559_100245455	3300032039	Soil	MSDPPVPRDPGQDDDPPGVPAGLGDRPWLGSPNWQLVPQSPDWPEWMDQDAHAHDEYPGDPDEYQDPDNAPPPGLDDNQLAALM
Ga0318556_103395812	3300032043	Soil	MSETPVPRDPGRDENPPGVPVGSGERPRLGSPDWRLVPQSPDWDQAYLAAIAGDEDPGDPDEYEDPDNAPPPGLEDAELEALLAGAREETAARARAA
Ga0318556_104155052	3300032043	Soil	MSDTPVSRDPGQDDNPPGVPAGPGDRPWLGSPDWQLAPQSPDWPEWMDEARAHDEDPGDLEEYEDPDSAPPPGLDDDQLAALIAEAREITAEQARAAEGWARLG
Ga0318558_106840201	3300032044	Soil	MSETPVPRDPGQDDNPSGVPAVPGDRPRLGSPDWRLVPQSPDWPEWMDDAHAEGEDPGDPDEYQDPDNAPPPGLDDAHLEALLAESGEITADQARAAEAAARSG
Ga0318570_104293471	3300032054	Soil	MHQEPAPQDPGRDDDPSGLPPGPGDRPSLGSPDWQLVPCRPDWDEAYLAALADDEDPGDLDLYEDPDNAPPAGLDDAELAALIAEAREIT
Ga0318514_100035678	3300032066	Soil	MSDPPVPRDPGQDDDPPGVPAGLGDRPWLGSPNWQLVPQSPDWPEWMDQDAHAHDEYPGDPDEYQDPDNAPPPGLDDNQLAALMAEAHEITAEQAQAAEG
Ga0318514_101461413	3300032066	Soil	MSETPAPGGPGRGEDPSGVPAGLAGPAGPGGHPALGSPHWQLVPQSPDWDAAFLAARAEDEYPGDLDLYQDPDNAPPAGLDDAQLAALITEARQHARAARK
Ga0318553_103080142	3300032068	Soil	MSETPVPRDPGQDDNPSGVPSGPGDRPSLGSPGWRLVPQSPDWPDWMDEEAHADDEDPGDPDLYQDPDNAPPVGLDDAELEALLA
Ga0318553_105771901	3300032068	Soil	MSETPVPSGPGRDEDPSGVPAGPGDHPALGSPDWQLAPQSPDWDEAYLAARAEDEYPGDPEEDQDPDNAPPAGLDDAQLAALITEARQNAREITADQTRRAEAWARSGHTAAMAAVEAVM
Ga0318518_106861292	3300032090	Soil	MSDTPVSRDPGQDDNPPGVPAGPGDRPWLGSPDWQLAPQSPDWPEWMDEARAHDEDPGDLEEYEDPDSAPPPGLDDDQLAALIAEAREIT
Ga0306920_1017452161	3300032261	Soil	MSETPVSRNPGQDGDPSGVPAGPGDRPRLGSPDWQLVSQSPDWDEAWLAARAEDEYPGDPDDYEDPDNAPPPGLDDAELAALLAEARQITADQARTAETWARLGHTAVLAAVGAVCAGR
Ga0318519_103198822	3300033290	Soil	MRGSPAPSDPGRDEDPSRVPAGPGDHPWLGSPDWRLVPQCADWDEAYLAAMADDEDPGDLEEYQDPDNAPPPGLDDAELEALIIAARQVTADLAGAAGRCPGPG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F087854

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences