Metagenome / Metatranscriptome Family F087897

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F087897
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	39 residues
Representative Sequence	RIGIVKKDQLDVNMNLKHGMFILPAKDEPEESIVTPVQD
Number of Associated Samples	92
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	95.45 %
Associated GOLD sequencing projects	84
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (93.636 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine (44.545 % of family members)
Environment Ontology (ENVO)	Unclassified (90.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (87.273 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 20.51% Coil/Unstructured: 79.49%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF03237	Terminase_6N	11.82

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.64 %
All Organisms	root	All Organisms	6.36 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.64 %
cellular organisms	root	All Organisms → cellular organisms	4.55 %
Viruses	superkingdom	All Organisms → Viruses	1.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.64 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	2.73 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.82 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.64 %
unclassified Archaea	no rank	All Organisms → cellular organisms → Archaea → unclassified Archaea	2.73 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.82 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.64 %
archaeon	species	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	2.73 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.82 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.82 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000101\|DelMOSum2010_c10251771	Not Available	555	Open in IMG/M
3300000115\|DelMOSum2011_c10228208	Not Available	505	Open in IMG/M
3300000116\|DelMOSpr2010_c10275055	Not Available	503	Open in IMG/M
3300001450\|JGI24006J15134_10066502	Not Available	1400	Open in IMG/M
3300001450\|JGI24006J15134_10174242	Not Available	681	Open in IMG/M
3300001450\|JGI24006J15134_10197795	Not Available	616	Open in IMG/M
3300001450\|JGI24006J15134_10250606	Not Available	509	Open in IMG/M
3300001450\|JGI24006J15134_10251273	Not Available	507	Open in IMG/M
3300001472\|JGI24004J15324_10117489	Not Available	657	Open in IMG/M
3300003619\|JGI26380J51729_10103339	Not Available	633	Open in IMG/M
3300004829\|Ga0068515_128307	Not Available	701	Open in IMG/M
3300005430\|Ga0066849_10405984	Not Available	512	Open in IMG/M
3300005914\|Ga0075117_1198224	Not Available	560	Open in IMG/M
3300005933\|Ga0075118_10144343	Not Available	803	Open in IMG/M
3300006029\|Ga0075466_1160725	Not Available	573	Open in IMG/M
3300006029\|Ga0075466_1179558	Not Available	532	Open in IMG/M
3300006735\|Ga0098038_1213591	Not Available	620	Open in IMG/M
3300006736\|Ga0098033_1144718	Not Available	667	Open in IMG/M
3300006750\|Ga0098058_1119695	Not Available	705	Open in IMG/M
3300006752\|Ga0098048_1182994	Not Available	621	Open in IMG/M
3300006753\|Ga0098039_1095155	Not Available	1026	Open in IMG/M
3300006789\|Ga0098054_1210275	Not Available	707	Open in IMG/M
3300006793\|Ga0098055_1199468	Not Available	760	Open in IMG/M
3300006802\|Ga0070749_10451883	Not Available	704	Open in IMG/M
3300006810\|Ga0070754_10440705	Not Available	566	Open in IMG/M
3300006810\|Ga0070754_10479637	Not Available	537	Open in IMG/M
3300006919\|Ga0070746_10402845	Not Available	613	Open in IMG/M
3300006920\|Ga0070748_1325447	Not Available	544	Open in IMG/M
3300006926\|Ga0098057_1085554	Not Available	769	Open in IMG/M
3300006927\|Ga0098034_1185718	Not Available	582	Open in IMG/M
3300006990\|Ga0098046_1090486	Not Available	683	Open in IMG/M
3300007074\|Ga0075110_1076290	Not Available	735	Open in IMG/M
3300007229\|Ga0075468_10217027	Not Available	552	Open in IMG/M
3300007229\|Ga0075468_10241500	Not Available	514	Open in IMG/M
3300007234\|Ga0075460_10319869	Not Available	506	Open in IMG/M
3300008012\|Ga0075480_10554910	Not Available	548	Open in IMG/M
3300008012\|Ga0075480_10624404	Not Available	508	Open in IMG/M
3300008050\|Ga0098052_1110655	Not Available	1112	Open in IMG/M
3300008050\|Ga0098052_1327232	Not Available	576	Open in IMG/M
3300008050\|Ga0098052_1398952	Not Available	511	Open in IMG/M
3300008217\|Ga0114899_1162640	Not Available	721	Open in IMG/M
3300009173\|Ga0114996_10891674	Not Available	638	Open in IMG/M
3300009422\|Ga0114998_10453306	Not Available	600	Open in IMG/M
3300009425\|Ga0114997_10649660	Not Available	553	Open in IMG/M
3300009433\|Ga0115545_1240227	Not Available	610	Open in IMG/M
3300009436\|Ga0115008_11124982	Not Available	592	Open in IMG/M
3300009481\|Ga0114932_10149205	Not Available	1437	Open in IMG/M
3300009498\|Ga0115568_10518379	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	505	Open in IMG/M
3300009512\|Ga0115003_10815621	Not Available	542	Open in IMG/M
3300009593\|Ga0115011_12141776	Not Available	514	Open in IMG/M
3300009602\|Ga0114900_1167352	Not Available	558	Open in IMG/M
3300009603\|Ga0114911_1205841	Not Available	533	Open in IMG/M
3300009679\|Ga0115105_11143653	Not Available	542	Open in IMG/M
3300009786\|Ga0114999_10228366	Not Available	1529	Open in IMG/M
3300010149\|Ga0098049_1260337	Not Available	526	Open in IMG/M
3300010150\|Ga0098056_1133191	Not Available	842	Open in IMG/M
3300010151\|Ga0098061_1336888	Not Available	514	Open in IMG/M
3300010151\|Ga0098061_1337959	Not Available	513	Open in IMG/M
3300010151\|Ga0098061_1338909	Not Available	512	Open in IMG/M
3300010153\|Ga0098059_1229007	Not Available	719	Open in IMG/M
3300010153\|Ga0098059_1369905	Not Available	543	Open in IMG/M
3300012950\|Ga0163108_10629115	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	693	Open in IMG/M
3300017715\|Ga0181370_1010895	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1182	Open in IMG/M
3300017729\|Ga0181396_1015478	Not Available	1520	Open in IMG/M
3300017742\|Ga0181399_1071772	Not Available	879	Open in IMG/M
3300017743\|Ga0181402_1171303	Not Available	545	Open in IMG/M
3300017744\|Ga0181397_1160044	Not Available	573	Open in IMG/M
3300017748\|Ga0181393_1173073	Not Available	531	Open in IMG/M
3300017770\|Ga0187217_1187515	Not Available	686	Open in IMG/M
3300017775\|Ga0181432_1119846	Not Available	794	Open in IMG/M
3300020166\|Ga0206128_1113810	Not Available	1147	Open in IMG/M
3300020169\|Ga0206127_1167051	Not Available	833	Open in IMG/M
3300020452\|Ga0211545_10231640	Not Available	850	Open in IMG/M
3300021365\|Ga0206123_10146095	Not Available	1086	Open in IMG/M
3300022164\|Ga0212022_1072654	Not Available	528	Open in IMG/M
3300022225\|Ga0187833_10049451	All Organisms → Viruses → Predicted Viral	2931	Open in IMG/M
3300022227\|Ga0187827_10069014	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	2734	Open in IMG/M
3300022839\|Ga0222649_1022016	Not Available	816	Open in IMG/M
3300022842\|Ga0222632_1031868	Not Available	833	Open in IMG/M
3300022851\|Ga0222691_1032309	Not Available	762	Open in IMG/M
3300022851\|Ga0222691_1037559	Not Available	680	Open in IMG/M
3300024346\|Ga0244775_11505009	Not Available	515	Open in IMG/M
3300025049\|Ga0207898_1017363	Not Available	907	Open in IMG/M
3300025078\|Ga0208668_1080861	Not Available	577	Open in IMG/M
3300025082\|Ga0208156_1060954	Not Available	735	Open in IMG/M
3300025085\|Ga0208792_1071183	Not Available	628	Open in IMG/M
3300025097\|Ga0208010_1090094	Not Available	639	Open in IMG/M
3300025108\|Ga0208793_1186041	Not Available	528	Open in IMG/M
3300025109\|Ga0208553_1095048	Not Available	695	Open in IMG/M
3300025114\|Ga0208433_1157119	Not Available	531	Open in IMG/M
3300025122\|Ga0209434_1095814	Not Available	854	Open in IMG/M
3300025122\|Ga0209434_1157768	Not Available	613	Open in IMG/M
3300025168\|Ga0209337_1031571	All Organisms → Viruses → Predicted Viral	2931	Open in IMG/M
3300025168\|Ga0209337_1267308	Not Available	643	Open in IMG/M
3300025168\|Ga0209337_1354849	Not Available	500	Open in IMG/M
3300025286\|Ga0208315_1136572	Not Available	555	Open in IMG/M
3300025570\|Ga0208660_1009329	Not Available	3324	Open in IMG/M
3300025671\|Ga0208898_1134549	Not Available	691	Open in IMG/M
3300025759\|Ga0208899_1263480	Not Available	504	Open in IMG/M
3300025876\|Ga0209223_10439597	Not Available	546	Open in IMG/M
3300027844\|Ga0209501_10232375	Not Available	1168	Open in IMG/M
3300028022\|Ga0256382_1129986	Not Available	605	Open in IMG/M
3300028022\|Ga0256382_1142361	Not Available	575	Open in IMG/M
3300029448\|Ga0183755_1059002	Not Available	918	Open in IMG/M
3300031142\|Ga0308022_1165464	Not Available	631	Open in IMG/M
3300031721\|Ga0308013_10012522	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	3704	Open in IMG/M
3300032011\|Ga0315316_10828308	Not Available	762	Open in IMG/M
3300034374\|Ga0348335_139997	Not Available	681	Open in IMG/M
3300034375\|Ga0348336_148873	Not Available	699	Open in IMG/M
3300034418\|Ga0348337_096491	Not Available	978	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	93.64%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	6.36%

Habitat	Taxonomy	Distribution
Oceanic	Environmental → Aquatic → Marine → Oceanic	50.91%
Coastal	Environmental → Aquatic → Marine → Coastal	17.27%
Pelagic	Environmental → Aquatic → Marine → Pelagic	6.36%
Strait	Environmental → Aquatic → Marine → Strait	6.36%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	6.36%
Unclassified	Environmental → Aquatic → Marine → Unclassified	5.45%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	4.55%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	1.82%
Volcanic	Environmental → Aquatic → Marine → Volcanic	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	50.00%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	17.27%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	6.36%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	6.36%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	6.36%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	5.45%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	4.55%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	1.82%
Photic Zone	Environmental → Aquatic → Marine → Oceanic → Photic Zone	0.91%
Unclassified	Environmental → Aquatic → Marine → Volcanic → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	44.55%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	17.27%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	6.36%
Seawater	Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater	4.55%
Deep Ocean	Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean	3.64%
Saline Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water	3.64%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	2.73%
Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine	2.73%
Seawater	Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater	1.82%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	1.82%
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	1.82%
Saline Lake	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake	1.82%
Seawater	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Seawater	0.91%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	0.91%
Seawater	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater	0.91%
Estuarine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine	0.91%
Pelagic Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine	0.91%
Marine Water	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine Water	0.91%
Deep Subsurface	Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface	0.91%
Saline Lake	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000101	Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010	Environmental	Open in IMG/M
3300000115	Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011	Environmental	Open in IMG/M
3300000116	Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010	Environmental	Open in IMG/M
3300001450	Marine viral communities from the Pacific Ocean - LP-53	Environmental	Open in IMG/M
3300001472	Marine viral communities from the Pacific Ocean - LP-32	Environmental	Open in IMG/M
3300003619	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI072_LV_165m_DNA	Environmental	Open in IMG/M
3300004829	Marine water microbial communities from the Pohang Bay, Korea with extracellular vesicles - Pohang-EVs	Environmental	Open in IMG/M
3300005430	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV69	Environmental	Open in IMG/M
3300005914	Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKJ	Environmental	Open in IMG/M
3300005933	Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKE	Environmental	Open in IMG/M
3300006029	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_<0.8_DNA	Environmental	Open in IMG/M
3300006735	Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG	Environmental	Open in IMG/M
3300006736	Marine viral communities from the Subarctic Pacific Ocean - 1_ETSP_OMZ_AT15124 metaG	Environmental	Open in IMG/M
3300006750	Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaG	Environmental	Open in IMG/M
3300006752	Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG	Environmental	Open in IMG/M
3300006753	Marine viral communities from the Subarctic Pacific Ocean - 6_ETSP_OMZ_AT15160 metaG	Environmental	Open in IMG/M
3300006789	Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG	Environmental	Open in IMG/M
3300006793	Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG	Environmental	Open in IMG/M
3300006802	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18	Environmental	Open in IMG/M
3300006810	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01	Environmental	Open in IMG/M
3300006919	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21	Environmental	Open in IMG/M
3300006920	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12	Environmental	Open in IMG/M
3300006926	Marine viral communities from the Subarctic Pacific Ocean - 18_ETSP_OMZAT15316 metaG	Environmental	Open in IMG/M
3300006927	Marine viral communities from the Subarctic Pacific Ocean - 2_ETSP_OMZ_AT15125 metaG	Environmental	Open in IMG/M
3300006990	Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG	Environmental	Open in IMG/M
3300007074	Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UK8	Environmental	Open in IMG/M
3300007229	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_<0.8_DNA	Environmental	Open in IMG/M
3300007234	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_<0.8_DNA	Environmental	Open in IMG/M
3300008012	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_<0.8_DNA	Environmental	Open in IMG/M
3300008050	Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaG	Environmental	Open in IMG/M
3300008217	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_215	Environmental	Open in IMG/M
3300009173	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134	Environmental	Open in IMG/M
3300009422	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138	Environmental	Open in IMG/M
3300009425	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136	Environmental	Open in IMG/M
3300009433	Pelagic marine microbial communities from North Sea - COGITO_mtgs_100330	Environmental	Open in IMG/M
3300009436	Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome	Environmental	Open in IMG/M
3300009481	Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG	Environmental	Open in IMG/M
3300009498	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120426	Environmental	Open in IMG/M
3300009512	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_88	Environmental	Open in IMG/M
3300009593	Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome	Environmental	Open in IMG/M
3300009602	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_231	Environmental	Open in IMG/M
3300009603	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_904	Environmental	Open in IMG/M
3300009679	Marine eukaryotic communities from Pacific Ocean to study complex ecological interactions - CN13ID_155_C17_100m_0.8um Metatranscriptome (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009786	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_126	Environmental	Open in IMG/M
3300010149	Marine viral communities from the Subarctic Pacific Ocean - 13B_ETSP_OMZ_AT15268_CsCl metaG	Environmental	Open in IMG/M
3300010150	Marine viral communities from the Subarctic Pacific Ocean - 17B_ETSP_OMZ_AT15314_CsCl metaG	Environmental	Open in IMG/M
3300010151	Marine viral communities from the Subarctic Pacific Ocean - 22_ETSP_OMZ_AT15343 metaG	Environmental	Open in IMG/M
3300010153	Marine viral communities from the Subarctic Pacific Ocean - 20_ETSP_OMZ_AT15318 metaG	Environmental	Open in IMG/M
3300012950	Marine microbial communities from the Central Pacific Ocean - Fk160115 155m metaG	Environmental	Open in IMG/M
3300017715	Marine viral communities from the Subarctic Pacific Ocean - Lowphox_06 viral metaG	Environmental	Open in IMG/M
3300017729	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 19 SPOT_SRF_2011-01-11	Environmental	Open in IMG/M
3300017742	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 22 SPOT_SRF_2011-05-21	Environmental	Open in IMG/M
3300017743	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 25 SPOT_SRF_2011-08-17	Environmental	Open in IMG/M
3300017744	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 20 SPOT_SRF_2011-02-23	Environmental	Open in IMG/M
3300017748	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 16 SPOT_SRF_2010-10-21	Environmental	Open in IMG/M
3300017770	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 15 SPOT_SRF_2010-09-15 (version 2)	Environmental	Open in IMG/M
3300017775	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 55 SPOT_SRF_2014-07-17	Environmental	Open in IMG/M
3300020166	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160426_1	Environmental	Open in IMG/M
3300020169	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160419_1	Environmental	Open in IMG/M
3300020452	Marine microbial communities from Tara Oceans - TARA_B100001173 (ERX556054-ERR599078)	Environmental	Open in IMG/M
3300021365	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160316_1	Environmental	Open in IMG/M
3300022164	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (v2)	Environmental	Open in IMG/M
3300022225	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014_SV_400_PacBio MetaG (Illumina Assembly)	Environmental	Open in IMG/M
3300022227	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014_SV_150_PacBio MetaG (Illumina Assembly)	Environmental	Open in IMG/M
3300022839	Saline water microbial communities from Ace Lake, Antarctica - #337	Environmental	Open in IMG/M
3300022842	Saline water microbial communities from Ace Lake, Antarctica - #46	Environmental	Open in IMG/M
3300022851	Saline water microbial communities from Ace Lake, Antarctica - #1237	Environmental	Open in IMG/M
3300024346	Whole water sample coassembly	Environmental	Open in IMG/M
3300025049	Marine viral communities from the Pacific Ocean - LP-55 (SPAdes)	Environmental	Open in IMG/M
3300025078	Marine viral communities from the Subarctic Pacific Ocean - 18_ETSP_OMZAT15316 metaG (SPAdes)	Environmental	Open in IMG/M
3300025082	Marine viral communities from the Subarctic Pacific Ocean - 1_ETSP_OMZ_AT15124 metaG (SPAdes)	Environmental	Open in IMG/M
3300025085	Marine viral communities from the Subarctic Pacific Ocean - 14_ETSP_OMZ_AT15311 metaG (SPAdes)	Environmental	Open in IMG/M
3300025097	Marine viral communities from the Subarctic Pacific Ocean - 2_ETSP_OMZ_AT15125 metaG (SPAdes)	Environmental	Open in IMG/M
3300025108	Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG (SPAdes)	Environmental	Open in IMG/M
3300025109	Marine viral communities from the Subarctic Pacific Ocean - 6_ETSP_OMZ_AT15160 metaG (SPAdes)	Environmental	Open in IMG/M
3300025114	Marine viral communities from the Subarctic Pacific Ocean - 3_ETSP_OMZ_AT15126 metaG (SPAdes)	Environmental	Open in IMG/M
3300025122	Marine viral communities from the Pacific Ocean - ETNP_2_300 (SPAdes)	Environmental	Open in IMG/M
3300025168	Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)	Environmental	Open in IMG/M
3300025286	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_215 (SPAdes)	Environmental	Open in IMG/M
3300025570	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_>0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025671	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (SPAdes)	Environmental	Open in IMG/M
3300025759	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (SPAdes)	Environmental	Open in IMG/M
3300025876	Pelagic Microbial community sample from North Sea - COGITO 998_met_06 (SPAdes)	Environmental	Open in IMG/M
3300027844	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134 (SPAdes)	Environmental	Open in IMG/M
3300028022	Seawater viral communities from deep brine pools at the bottom of the Mediterranean Sea - LS1 750m	Environmental	Open in IMG/M
3300029448	Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082	Environmental	Open in IMG/M
3300031142	Marine microbial communities from water near the shore, Antarctic Ocean - #353	Environmental	Open in IMG/M
3300031721	Marine microbial communities from water near the shore, Antarctic Ocean - #181	Environmental	Open in IMG/M
3300032011	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 3416	Environmental	Open in IMG/M
3300034374	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31 (v4)	Environmental	Open in IMG/M
3300034375	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 (v4)	Environmental	Open in IMG/M
3300034418	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28 (v4)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
DelMOSum2010_102517713	3300000101	Marine	VKKDQLDVNMNLKHGMFILPAKDEVEESIVTPVQD*
DelMOSum2011_102282083	3300000115	Marine	LDRIGIVKKDQLDVNMNLKHGMFILPAKDEVEESIVTPVQD*
DelMOSpr2010_102750551	3300000116	Marine	KKDQLDVNMNLKHGMFILPAKDEVEESIVTPVQD*
JGI24006J15134_100665021	3300001450	Marine	IVKKDQLDINMKAVHGIFILPAKETPEESIITPVED*
JGI24006J15134_101742421	3300001450	Marine	IVKKDQLDVNMNLKHGLFILPAKEEPQESIVTPIQE*
JGI24006J15134_101977953	3300001450	Marine	IVKKDQLDINMNLKHGMFILPAKDEVEESIVTPVQD*
JGI24006J15134_102506061	3300001450	Marine	QILDRIGIVKKDQLDINMNLKHGMFILPAKNEPEESIVTPVQD*
JGI24006J15134_102512731	3300001450	Marine	GIVKKDQLDINMKAVHGIFILPAKETPEESIVTPVED*
JGI24004J15324_101174891	3300001472	Marine	ILDRIGIVKKDQLDVNMNLKHGMFILPAKDEVEESIVTPVQD*
JGI26380J51729_101033391	3300003619	Marine	RIGLVKKDQLDVNMNVKHGIFILPAKNEPEESIVTPVQD*
Ga0068515_1283071	3300004829	Marine Water	RIGIVKKDQLDVNMNLKHGMFILPAKDEPEESIVTPVQD*
Ga0066849_104059841	3300005430	Marine	RIGVVKKDQLDINMQVKHGIFILPAKEEPKESIVTPVED*
Ga0075117_11982243	3300005914	Saline Lake	GIVKKDQLDINMNLKHGMFILPAKNEPEESIVTPVQD*
Ga0075118_101443431	3300005933	Saline Lake	ILDRIGIVKKDQLDINMNLKHGMFILPAKNEPEESIVTPVQD*
Ga0075466_11607251	3300006029	Aqueous	DRIGIVKKDQLDVNMNLKHGMFILPAKDEVEESIVTPVQD*
Ga0075466_11795581	3300006029	Aqueous	GIVKKDQLDVNMNLKHGMFILPAKDEPEESIVTPVQD*
Ga0098038_12135911	3300006735	Marine	ILDRIGIVKKDQLDVNMNLKHGMFILPAKDEVEESIVTPVED*
Ga0098033_11447183	3300006736	Marine	DRIGIVKKDQIDINMKAMHGIFILPAKETPEDSIVTPIKD*
Ga0098058_11196954	3300006750	Marine	VKKDQIDINMKAMHGIFILPAKEEPKESIVTPVED*
Ga0098048_11829941	3300006752	Marine	IGVVKKDQIDINMKAMHGIFILPAKEEPKESIVTPVED*
Ga0098039_10951552	3300006753	Marine	RIGIVKKEQMDINMKAMHGLFILPPKEEPKESIVTPVED*
Ga0098054_12102751	3300006789	Marine	ILDRIGVVKKDQIDINMKAMHGIFILPPKEKPEESIVTPVED*
Ga0098055_11994681	3300006793	Marine	QILDRIGVVKKDQIDINMKAMHGIFILPPKEEPKESIVTPVED*
Ga0070749_104518831	3300006802	Aqueous	KKDQLDVNMNLKHGMFILPAKDEPEESIVTPVQD*
Ga0070754_104407052	3300006810	Aqueous	IGIVKKDQLDVNMNLKHGMFILPAKDEVEESIVTPVQD*
Ga0070754_104796371	3300006810	Aqueous	IGIVKKDQLDVNMNLKHGMFILPAKDEPEESIVTPVQD*
Ga0070746_104028451	3300006919	Aqueous	ILDRIGIVKKDQVDINMNLKHGMFILPAKDEPEESIVTPVQD*
Ga0070748_13254471	3300006920	Aqueous	IVKKDQLDVNMNLKHGMFILPAKDEVEESIVTPVQD*
Ga0098057_10855541	3300006926	Marine	IGIVKKEQMDINMKAMHGLFILPPKEEPKESIVTPVEE*
Ga0098034_11857183	3300006927	Marine	IGVVKKDQLDISMQVKHGIFILPAKEEPKESIVTPVED*
Ga0098046_10904861	3300006990	Marine	KQILYRIGIVKKDQLDVNMNLKHGMFILPAKDEVEESIVTPVQD*
Ga0075110_10762903	3300007074	Saline Lake	RIGIVKKDQLDINMNLKHGMFILPAKNEPEESIVTPVQD*
Ga0075468_102170271	3300007229	Aqueous	GIVKKDQVDINMNLKHGMFILPAKDEPEESIVTPVQD*
Ga0075468_102415001	3300007229	Aqueous	RIGIVKKDQLDINMNLKHGMFILPAKNEPEESIVTPIQD*
Ga0075460_103198691	3300007234	Aqueous	QILDRIGIVKKDQLDVNMNLKHGMFILPAKDEPEESIVTPVQD*
Ga0075480_105549103	3300008012	Aqueous	VKKDQLDVNMNLKHGMFILPAKDEPEESIVTPVQD*
Ga0075480_106244041	3300008012	Aqueous	ILDRVGIVKKDQLDVNMNLKHGMFILPAKDEVEESIVTPVQD*
Ga0098052_11106551	3300008050	Marine	IVKKDQLDINMKAVHGIFILPAKEEPKESIVTPVED*
Ga0098052_13272321	3300008050	Marine	RIGIVKKDQLDINMKALHGIFILPAKDKLDDSLNTSEKK*
Ga0098052_13989523	3300008050	Marine	LDRIGVVKKDQLDINMQVKHGIFILPAKEEPKESIVTPVED*
Ga0114899_11626403	3300008217	Deep Ocean	GIVKKDSLDINMKAMHGIFILPAKETPEESIVTPVED*
Ga0114996_108916741	3300009173	Marine	QILDRIGIVKKDQLDVNMNLKHGLFILPAKEEPQESIVTPIQD*
Ga0114998_104533061	3300009422	Marine	KKDQLDINMNLKHGMFILPAKNEPEESIVTPVQD*
Ga0114997_106496603	3300009425	Marine	IVKKDQLDINMNLKHGMFILPAKNEPEESIVTPVQD*
Ga0115545_12402273	3300009433	Pelagic Marine	DRIGIVKKDQLDVNMNLKHGMFILPAKDEPEESIVTPVQD*
Ga0115008_111249821	3300009436	Marine	ILDRIGVVKKDQLDINMNLKHGMFILPAKDKVEESIVTPVQD*
Ga0114932_101492052	3300009481	Deep Subsurface	GIVKKDQLDVNMNLKHGMFILPAKDEVQESIVTPVQD*
Ga0115568_105183792	3300009498	Pelagic Marine	QILDRVGIVKKDQLDVNMNLKHGMFILPAKDEPEESIVTPVQD*
Ga0115003_108156213	3300009512	Marine	IGIVKKDQLDINMNLKHGMFILPAKNEPEESIVTPVQD*
Ga0115011_121417763	3300009593	Marine	IGLVKKDQVDINMNLKHGIFILPGKDPVEESIVTPVQD*
Ga0114900_11673521	3300009602	Deep Ocean	RIGLTKKDQLDINMQFKHGIFILPAKEEPKESIVTPVED*
Ga0114911_12058412	3300009603	Deep Ocean	IVKKEQMDINMKAIHGLFILPPKEEPKESIVTPVED*
Ga0115105_111436533	3300009679	Marine	LDRIGLTKKDQLDINMQVKHGIFILPAKEEPKESIVTPIED*
Ga0114999_102283663	3300009786	Marine	GIVKKDQLDVNMNLKHGLFILPAKEEPQESIVTPIQD*
Ga0098049_12603371	3300010149	Marine	KKDQLDINMKALHGIFILPAKDKLDDSLNTSEKK*
Ga0098056_11331912	3300010150	Marine	GIVKKDQLDVNMNLKHGMFILPAKDEVEESIVTPVQD*
Ga0098061_13368881	3300010151	Marine	KKEQMDINMKAMHGLFILPPKEEPKESIVTPVEE*
Ga0098061_13379591	3300010151	Marine	IGVVKKDQIDINMKAMHGIFILPPKEEPEESIVTPVED*
Ga0098061_13389093	3300010151	Marine	LDRIGVVKKDQLDINMQVKHGIFILPAKEEAKESIVTPVED*
Ga0098059_12290071	3300010153	Marine	VGIVKKDQLDINMKSLHGIFILPAKDKPKESIVTPVED*
Ga0098059_13699051	3300010153	Marine	DRIGIVKKDSLDINMKAMHGIFILPAKETPEESIVTPVED*
Ga0163108_106291151	3300012950	Seawater	QILDRIGVVKKDQLDINMQVKHGIFILPAKEEPKESIVTPVED*
Ga0181370_10108953	3300017715	Marine	DRIGIVKKDQIDINMKAMHGIFILPAKETPEDSIVTPIKD
Ga0181396_10154784	3300017729	Seawater	LDRIGIVKKDQLDVNMNLKHGMFILPAKDEVEESIVTPVED
Ga0181399_10717721	3300017742	Seawater	IGIVKKDQVDINMNLKHGMFILPAKDEVEESIVTPVQD
Ga0181402_11713033	3300017743	Seawater	DRIGIVKKDQVDINMNLKHGMFILPAKDEVEESIVTPVQD
Ga0181397_11600441	3300017744	Seawater	LDRIGIVKKDQVDVNMNLKHGMFILPAKDEVEESIVTPVQD
Ga0181393_11730733	3300017748	Seawater	IVKKDQLDVNMNLKHGMFILPAKDEVEKSIVTPVQD
Ga0187217_11875153	3300017770	Seawater	IGIVKKDQLDVNMNLKHGMFILPAKDEVEESIVTPVED
Ga0181432_11198461	3300017775	Seawater	IVKKDQLDINMKAMHGIFILPAKETPEESIVTPVED
Ga0206128_11138101	3300020166	Seawater	IVKKDQLDVNMNLKHGMFILPAKDEVEESIVTPVQD
Ga0206127_11670512	3300020169	Seawater	DRIGIVKKDQLDVNMNLKHGMFILPAKDEVEESIVTPVQD
Ga0211545_102316402	3300020452	Marine	VKKDQLDVNMNLKHGMFILPAKDEVEESIVTPVQD
Ga0206123_101460952	3300021365	Seawater	ILDRIGIVKKDQLDVNMNLKHGMFILPAKDEVEESIVTPVQD
Ga0212022_10726541	3300022164	Aqueous	RVGIVKKDQLDVNMNLKHGMFILPAKDEPEESIVTPVQD
Ga0187833_100494511	3300022225	Seawater	GIVKKDQIDINMKAMHGIFILPAKETPEDSIVTPIKD
Ga0187827_100690141	3300022227	Seawater	DRIGIVKKDQLDINMKAMHGIFILPAKETPEESIVTPVED
Ga0222649_10220163	3300022839	Saline Water	VKKDQLDINMNLKHGMFILPAKNEPEESIVTPVQD
Ga0222632_10318684	3300022842	Saline Water	IVKKDQLDINMNLKHGMFILPAKNEPEESIVTPVQD
Ga0222691_10323093	3300022851	Saline Water	RIGIVKKDQLDINMNLKHGMFILPAKNEPEESIVTPVQD
Ga0222691_10375593	3300022851	Saline Water	LDRIGIVKKDQLDINMNLKHGMFILPAKNEPEESIVTPVQD
Ga0244775_115050093	3300024346	Estuarine	DRIGIVKKDQLDINMNLKHGMFILPAKDEVEESIVTPVQD
Ga0207898_10173631	3300025049	Marine	RIGIVKKDSLDINMKAMHGIFILPAKETPADSIVTPIKD
Ga0208668_10808613	3300025078	Marine	GIVKKDQLDINMKAMHGIFILPAKETPEESIVTPVED
Ga0208156_10609543	3300025082	Marine	GIVKKEQMDINMKAMHGLFILPPKEEPKESIVTPVED
Ga0208792_10711833	3300025085	Marine	QILDRIGVVKKDQIDINMKAMHGIFILPPKEEPEESIVTPVED
Ga0208010_10900941	3300025097	Marine	RIGIVKKDQLDINMKAMHGIFILPAKETPEESIVTPVED
Ga0208793_11860413	3300025108	Marine	RIGIVKKDQLDVNMNLKHGMFILPAKDEVEESIVTPVQD
Ga0208553_10950481	3300025109	Marine	IGIVKKDQLDINMKAMHGIFILPAKETPEESIVTPVED
Ga0208433_11571191	3300025114	Marine	VVKKDQIDINMKAMHGIFILPAKEEPKESIVTPVED
Ga0209434_10958144	3300025122	Marine	VKKDQLDINMKAMHGIFILPAKETPEESIVTPVED
Ga0209434_11577683	3300025122	Marine	VKKDQIDINMKAMHGIFILPAKEEPKESIVTPVED
Ga0209337_10315711	3300025168	Marine	RIGIVKKDQLDVNMNLKHGLFILPAKEEPQESIVTPIQE
Ga0209337_12673083	3300025168	Marine	IVKKDQLDINMNLKHGMFILPAKDEVEESIVTPVQD
Ga0209337_13548491	3300025168	Marine	QILDRIGIVKKDQLDINMNLKHGMFILPAKNEPEESIVTPVQD
Ga0208315_11365723	3300025286	Deep Ocean	DRIGIVKKDSLDINMKAMHGIFILPAKETPEESIVTPVED
Ga0208660_10093298	3300025570	Aqueous	RIGIVKKDQLDVNMNLKHGMFILPAKDEPEESIVTPVQD
Ga0208898_11345493	3300025671	Aqueous	DRIGIVKKDQVDINMNLKHGMFILPAKDEPEESIVTPVQD
Ga0208899_12634803	3300025759	Aqueous	DRIGIVKKDQLDVNMNLKHGMFILPAKDEPEESIVTPVQD
Ga0209223_104395973	3300025876	Pelagic Marine	ILDRVGIVKKDQLDVNMNLKHGMFILPAKDEVEESIVTPVQD
Ga0209501_102323752	3300027844	Marine	IGIVKKDQLDINMKAVHGIFILPAKETPEESIVTPVED
Ga0256382_11299862	3300028022	Seawater	VVKKDSLDVNMKVAHGIFILPAKETPKESIVTPNED
Ga0256382_11423613	3300028022	Seawater	ILDRIGLTKKDQLDINMQVKHGIFILPAKEEPKESIVTPVED
Ga0183755_10590023	3300029448	Marine	TKKDQLDINMQVKHGIFILPAKEEPKESIVTPVED
Ga0308022_11654643	3300031142	Marine	LDRVGIVKKDQLDINMNLKHGMFILPAKEEPEESIVTPIQE
Ga0308013_100125228	3300031721	Marine	QVLDRVGIVKKDQLDINMNLKHGMFILPAKEEPEESIVTPIQE
Ga0315316_108283083	3300032011	Seawater	AKQILDRIGLVKKDQVDINMNLKHGIFILPGKDPVEESIVTPVEE
Ga0348335_139997_2_130	3300034374	Aqueous	ILDRIGIVKKDQLDVNMNLKHGMFILPAKDEPEESIVTPVQD
Ga0348336_148873_579_698	3300034375	Aqueous	RIGIVKKDQVDINMNLKHGMFILPAKDEPEESIVTPVQD
Ga0348337_096491_852_977	3300034418	Aqueous	LDRIGIVKKDQLDVNMNLKHGMFILPAKDEVEESIVTPVQD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F087897

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences