NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F087981

Metagenome Family F087981

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F087981
Family Type Metagenome
Number of Sequences 109
Average Sequence Length 42 residues
Representative Sequence KRNINKLDKNIVMMKSINKRLMKAKLKHYKNTKKESKNMILI
Number of Associated Samples 18
Number of Associated Scaffolds 109

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 1.85 %
% of genes near scaffold ends (potentially truncated) 52.29 %
% of genes from short scaffolds (< 2000 bps) 58.72 %
Associated GOLD sequencing projects 18
AlphaFold2 3D model prediction Yes
3D model pTM-score0.54

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (42.202 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza
(83.486 % of family members)
Environment Ontology (ENVO) Unclassified
(100.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Unclassified
(77.982 % of family members)



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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 57.14%    β-sheet: 0.00%    Coil/Unstructured: 42.86%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.54
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 109 Family Scaffolds
PF14111DUF4283 1.83
PF00612IQ 0.92
PF08284RVP_2 0.92
PF00254FKBP_C 0.92
PF13952DUF4216 0.92
PF14432DYW_deaminase 0.92
PF09337zf-H2C2 0.92
PF03732Retrotrans_gag 0.92
PF03641Lysine_decarbox 0.92
PF07727RVT_2 0.92
PF02992Transposase_21 0.92
PF00069Pkinase 0.92

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 109 Family Scaffolds
COG0515Serine/threonine protein kinaseSignal transduction mechanisms [T] 3.67
COG1611Nucleotide monophosphate nucleosidase PpnN/YdgH, Lonely Guy (LOG) familyNucleotide transport and metabolism [F] 0.92


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms57.80 %
UnclassifiedrootN/A42.20 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300028786|Ga0307517_10008020All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus15232Open in IMG/M
3300028786|Ga0307517_10010492All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus → Populus trichocarpa12962Open in IMG/M
3300028786|Ga0307517_10014123All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus → Populus trichocarpa10766Open in IMG/M
3300028786|Ga0307517_10025811All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta7159Open in IMG/M
3300028786|Ga0307517_10050659All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus → Populus trichocarpa4214Open in IMG/M
3300028786|Ga0307517_10057100Not Available3790Open in IMG/M
3300028786|Ga0307517_10126365Not Available1863Open in IMG/M
3300028786|Ga0307517_10148926All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus → Populus trichocarpa1613Open in IMG/M
3300028786|Ga0307517_10159351All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta1520Open in IMG/M
3300028786|Ga0307517_10191505Not Available1297Open in IMG/M
3300028786|Ga0307517_10196844All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylomonas → unclassified Methylomonas → Methylomonas sp. Kb31267Open in IMG/M
3300028786|Ga0307517_10299183Not Available903Open in IMG/M
3300028786|Ga0307517_10361770Not Available783Open in IMG/M
3300028786|Ga0307517_10454691Not Available662Open in IMG/M
3300028786|Ga0307517_10581253Not Available555Open in IMG/M
3300028794|Ga0307515_10022337All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus11155Open in IMG/M
3300028794|Ga0307515_10046438All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta6637Open in IMG/M
3300028794|Ga0307515_10085928All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus → Populus trichocarpa4018Open in IMG/M
3300028794|Ga0307515_10179026All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae2078Open in IMG/M
3300028794|Ga0307515_10201829Not Available1861Open in IMG/M
3300028794|Ga0307515_10241947All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales → Sphingobacteriaceae → unclassified Sphingobacteriaceae → Sphingobacteriaceae bacterium1573Open in IMG/M
3300028794|Ga0307515_10274987Not Available1399Open in IMG/M
3300028794|Ga0307515_10412855All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylomonas → unclassified Methylomonas → Methylomonas sp. Kb3972Open in IMG/M
3300028794|Ga0307515_10592966All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylomonas → unclassified Methylomonas → Methylomonas sp. Kb3718Open in IMG/M
3300030521|Ga0307511_10016043All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta7236Open in IMG/M
3300030521|Ga0307511_10028288All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus → Populus trichocarpa5094Open in IMG/M
3300030521|Ga0307511_10042228All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus → Populus trichocarpa3834Open in IMG/M
3300030521|Ga0307511_10051464All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta3302Open in IMG/M
3300030521|Ga0307511_10071210All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylomonas → unclassified Methylomonas → Methylomonas sp. Kb32538Open in IMG/M
3300030521|Ga0307511_10127279All Organisms → Viruses → Predicted Viral1548Open in IMG/M
3300030521|Ga0307511_10282600Not Available766Open in IMG/M
3300030521|Ga0307511_10347995Not Available638Open in IMG/M
3300030522|Ga0307512_10012450All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta8031Open in IMG/M
3300030522|Ga0307512_10030132All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus → Populus trichocarpa4727Open in IMG/M
3300030522|Ga0307512_10112680Not Available1783Open in IMG/M
3300030522|Ga0307512_10159816All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylomonas → unclassified Methylomonas → Methylomonas sp. Kb31323Open in IMG/M
3300030522|Ga0307512_10181477All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Salix → Salix suchowensis1181Open in IMG/M
3300030522|Ga0307512_10210230All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus → Populus trichocarpa1036Open in IMG/M
3300030522|Ga0307512_10211229All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus → Populus trichocarpa1031Open in IMG/M
3300030522|Ga0307512_10269153All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylomonas → unclassified Methylomonas → Methylomonas sp. Kb3827Open in IMG/M
3300030522|Ga0307512_10413476Not Available560Open in IMG/M
3300030522|Ga0307512_10415090Not Available558Open in IMG/M
3300031456|Ga0307513_10023865All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta7133Open in IMG/M
3300031456|Ga0307513_10042255Not Available5021Open in IMG/M
3300031456|Ga0307513_10070254All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta3660Open in IMG/M
3300031456|Ga0307513_10746341Not Available684Open in IMG/M
3300031507|Ga0307509_10036161All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus → Populus trichocarpa5411Open in IMG/M
3300031507|Ga0307509_10221312All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylomonas → unclassified Methylomonas → Methylomonas sp. Kb31705Open in IMG/M
3300031507|Ga0307509_10275204Not Available1448Open in IMG/M
3300031507|Ga0307509_10312612All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylomonas → unclassified Methylomonas → Methylomonas sp. Kb31312Open in IMG/M
3300031507|Ga0307509_10594674Not Available779Open in IMG/M
3300031507|Ga0307509_10667316Not Available707Open in IMG/M
3300031616|Ga0307508_10055061All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus → Populus trichocarpa3524Open in IMG/M
3300031616|Ga0307508_10062113Not Available3298Open in IMG/M
3300031616|Ga0307508_10076251All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Glycine → Glycine subgen. Soja → Glycine max2930Open in IMG/M
3300031616|Ga0307508_10150451All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae1932Open in IMG/M
3300031616|Ga0307508_10193124Not Available1637Open in IMG/M
3300031616|Ga0307508_10196455Not Available1618Open in IMG/M
3300031616|Ga0307508_10200476Not Available1596Open in IMG/M
3300031616|Ga0307508_10337214Not Available1099Open in IMG/M
3300031616|Ga0307508_10413904All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus → Populus trichocarpa939Open in IMG/M
3300031616|Ga0307508_10448085All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylomonas → unclassified Methylomonas → Methylomonas sp. Kb3883Open in IMG/M
3300031616|Ga0307508_10579197Not Available722Open in IMG/M
3300031616|Ga0307508_10739968All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylomonas → unclassified Methylomonas → Methylomonas sp. Kb3595Open in IMG/M
3300031649|Ga0307514_10056377All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus → Populus trichocarpa3016Open in IMG/M
3300031649|Ga0307514_10065063All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylomonas → unclassified Methylomonas → Methylomonas sp. Kb32763Open in IMG/M
3300031649|Ga0307514_10137964All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus → Populus trichocarpa1664Open in IMG/M
3300031649|Ga0307514_10312229Not Available870Open in IMG/M
3300031649|Ga0307514_10551638All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylomonas → unclassified Methylomonas → Methylomonas sp. Kb3531Open in IMG/M
3300031730|Ga0307516_10017908All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus → Populus trichocarpa7377Open in IMG/M
3300031730|Ga0307516_10239756All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylomonas → unclassified Methylomonas → Methylomonas sp. Kb31512Open in IMG/M
3300031730|Ga0307516_10377913Not Available1078Open in IMG/M
3300031730|Ga0307516_10450482Not Available943Open in IMG/M
3300031730|Ga0307516_10637451Not Available720Open in IMG/M
3300031730|Ga0307516_10742462Not Available640Open in IMG/M
3300031838|Ga0307518_10066796All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylomonas → unclassified Methylomonas → Methylomonas sp. Kb32608Open in IMG/M
3300031838|Ga0307518_10180175All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Klebsiella/Raoultella group → Klebsiella → Klebsiella pneumoniae1429Open in IMG/M
3300032354|Ga0325403_1000274All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta32553Open in IMG/M
3300032354|Ga0325403_1003050Not Available15123Open in IMG/M
3300032354|Ga0325403_1035732Not Available3978Open in IMG/M
3300032354|Ga0325403_1070891Not Available1961Open in IMG/M
3300032355|Ga0325401_1033719All Organisms → Viruses → Predicted Viral4399Open in IMG/M
3300032355|Ga0325401_1033827Not Available4388Open in IMG/M
3300032355|Ga0325401_1130985Not Available1113Open in IMG/M
3300032374|Ga0325400_1017506All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta6778Open in IMG/M
3300032374|Ga0325400_1030188All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylomonas → unclassified Methylomonas → Methylomonas sp. Kb34900Open in IMG/M
3300032374|Ga0325400_1040009All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus → Populus trichocarpa4059Open in IMG/M
3300032374|Ga0325400_1045031Not Available3720Open in IMG/M
3300032374|Ga0325400_1197742All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylomonas → unclassified Methylomonas → Methylomonas sp. Kb3907Open in IMG/M
3300032389|Ga0325405_1001557All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae23342Open in IMG/M
3300032389|Ga0325405_1033841All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → rosids incertae sedis → Vitales → Vitaceae → Viteae → Vitis → Vitis vinifera3803Open in IMG/M
3300032389|Ga0325405_1074560All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylomonas → unclassified Methylomonas → Methylomonas sp. Kb31419Open in IMG/M
3300032390|Ga0325404_1029269Not Available4368Open in IMG/M
3300032390|Ga0325404_1065796All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylomonas → unclassified Methylomonas → Methylomonas sp. Kb31656Open in IMG/M
3300033179|Ga0307507_10010419All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus → Populus trichocarpa12020Open in IMG/M
3300033179|Ga0307507_10162395All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus → Populus trichocarpa1647Open in IMG/M
3300033179|Ga0307507_10179395All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylomonas → unclassified Methylomonas → Methylomonas sp. Kb31517Open in IMG/M
3300033179|Ga0307507_10205591Not Available1353Open in IMG/M
3300033179|Ga0307507_10238905All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylomonas → unclassified Methylomonas → Methylomonas sp. Kb31192Open in IMG/M
3300033179|Ga0307507_10240519Not Available1185Open in IMG/M
3300033179|Ga0307507_10325262Not Available922Open in IMG/M
3300033179|Ga0307507_10471920Not Available685Open in IMG/M
3300033179|Ga0307507_10529264Not Available627Open in IMG/M
3300033179|Ga0307507_10585572Not Available580Open in IMG/M
3300033180|Ga0307510_10033141All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus → Populus trichocarpa5806Open in IMG/M
3300033180|Ga0307510_10111903Not Available2469Open in IMG/M
3300033180|Ga0307510_10373361Not Available872Open in IMG/M
3300034389|Ga0325419_012614All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus8518Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
EctomycorrhizaHost-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza83.49%
XylemHost-Associated → Plants → Wood → Unclassified → Unclassified → Xylem15.60%
LeafHost-Associated → Plants → Phylloplane → Unclassified → Unclassified → Leaf0.92%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300028786Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EMHost-AssociatedOpen in IMG/M
3300028794Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EMHost-AssociatedOpen in IMG/M
3300030521Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EMHost-AssociatedOpen in IMG/M
3300030522Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EMHost-AssociatedOpen in IMG/M
3300031456Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EMHost-AssociatedOpen in IMG/M
3300031507Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EMHost-AssociatedOpen in IMG/M
3300031616Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EMHost-AssociatedOpen in IMG/M
3300031649Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EMHost-AssociatedOpen in IMG/M
3300031730Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EMHost-AssociatedOpen in IMG/M
3300031838Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 25_EMHost-AssociatedOpen in IMG/M
3300032354Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R4Host-AssociatedOpen in IMG/M
3300032355Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R2Host-AssociatedOpen in IMG/M
3300032374Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R1Host-AssociatedOpen in IMG/M
3300032389Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-Control-R2Host-AssociatedOpen in IMG/M
3300032390Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-Control-R1Host-AssociatedOpen in IMG/M
3300033179Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EMHost-AssociatedOpen in IMG/M
3300033180Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EMHost-AssociatedOpen in IMG/M
3300034389Populus deltoides microbial communities from Bellville, Georgia, United States - Leaf-Control-R4Host-AssociatedOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0307517_1000802013300028786EctomycorrhizaRNINKLDKNIVMMKSINKRLMKAKLKHYKNTKKESKNMILI
Ga0307517_10010492103300028786EctomycorrhizaMNKRNINRLDKNIVMMKNVNKRLMKAELKHYKITKKENKSKILMXKQICLHVWKMPPFIG
Ga0307517_1001412343300028786EctomycorrhizaMNKRNINRLDKNIVTIKNINKRLMKAELKHYKITKKENKSKILI
Ga0307517_1002581113300028786EctomycorrhizaNKLDKNIVMIKSINKRLMKAKLKHYKNTKKESKNMILI
Ga0307517_1005065973300028786EctomycorrhizaINKLDKNIVMMKNINKRLMKAKLKHYKNIKKESKNMILI
Ga0307517_1005710043300028786EctomycorrhizaMNKRNINRLDKNIVMMKNINKRLMKAELKHYKITKKENKSKILILKPRCPNA
Ga0307517_1012636513300028786EctomycorrhizaMNKRNINKLDKNIVMMKSINKRLMKAKLKHYKNTKKESKNMILI
Ga0307517_1014892613300028786EctomycorrhizaMIKKRNINKLDKNIFMMKIINKILMRAKLKHYKNIKRESKNMILIGKL
Ga0307517_1015935113300028786EctomycorrhizaMIKKRNINEVDKNIFMMKSIKKRLMRAQLKHYKNTKKESKNMILI
Ga0307517_1019150513300028786EctomycorrhizaMNKININKLDKNIVMMKNINKRLMKEKLKHYKNTKKESKNMILI
Ga0307517_1019684413300028786EctomycorrhizaMIKKRNINKLDKNIVMMKGINKRLMIAKLKHYKNTKKESKNMILI
Ga0307517_1029918323300028786EctomycorrhizaLNIMKKKNINKLDKNIVMMKSINKRLMKAKLKHYKI
Ga0307517_1036177013300028786EctomycorrhizaRNINKLHKNIVMMKSINKRLMKAKLKQYKNTKKESKNMILI
Ga0307517_1045469113300028786EctomycorrhizaKRNINKLDKNIVMMKSINKRLMKAKLKHYKTTKKESKNMILI
Ga0307517_1058125313300028786EctomycorrhizaVNKRNINKLDKNIVMIKSINKRLIKAKLKHYKNTKKEELRRLIHQ
Ga0307515_1002233713300028794EctomycorrhizaMIKKRNINKLDKNIVMMKSINKRLMRAKLKHYKNIKKESKNMILI
Ga0307515_10046438133300028794EctomycorrhizaMIKKRNINKLDKNIVMMKIINKILMRAKLKYYKNIKKESKNMILI
Ga0307515_1008592843300028794EctomycorrhizaMIKKRNINKLDKNIVMMKIINKILMRAKLKHYKNIKRESKNMILIGKL
Ga0307515_1017902633300028794EctomycorrhizaMNKRNINKLDKNIVIMKSINKILMKAKLKHYKNTKKESKNMILI
Ga0307515_1020182913300028794EctomycorrhizaMNKRNINRLDKNIVMMKNINNRLMKAKLKHYKNTKKESKNMILI
Ga0307515_1024194713300028794EctomycorrhizaKRNINKLDKNIVMMKSINKRLMKAKLKHYKNTKKESKNMILI
Ga0307515_1027498713300028794EctomycorrhizaIVKKRNINKLDKNIVIMKSINKRLIIKTKLKHYKNIKKESKYMILI
Ga0307515_1041285513300028794EctomycorrhizaMIKKRNINKLDKNIVMMKIINKILMRAKLKHYKNIKRERART
Ga0307515_1059296613300028794EctomycorrhizaKKLDKNIVMMKSINKRLIRAKLKHYKNTKKESKCMILI
Ga0307511_1001604323300030521EctomycorrhizaMKKININKLDKNIIMMKSINKRLMKAKLKHYKNTKKESKNMILI
Ga0307511_1002828813300030521EctomycorrhizaMNKRNINRLDKNIVMMKNVNKRLMKAELKHYKITKKENKSKILK
Ga0307511_1004222853300030521EctomycorrhizaKLDKNIVMMKSINKRLMKAKLKHYKNTKKESKNMILI
Ga0307511_1005146413300030521EctomycorrhizaNINKQDKNIVMMKSINKRLMKAKLKHYKNIKKESKNMILI
Ga0307511_1007121013300030521EctomycorrhizaINKLDKNIVMMKSINKRLMKAKLKHYKNTKKESKNMILI
Ga0307511_1012727913300030521EctomycorrhizaMKKININKLDKNIVMMKSINKRLMKAKLKHYKNTKKE
Ga0307511_1028260013300030521EctomycorrhizaMKKKNINKLDKNIVMMKSINKRLMKAKLRHYRNIKKESKNIILI
Ga0307511_1034799513300030521EctomycorrhizaMNKRNINRLDKNIVMMKNINKRLMKAELKHYKITKKENKSKILILK
Ga0307512_1001245013300030522EctomycorrhizaMKKKNINELDKNIVMIKSINKRLMKAKLKHYKNSD
Ga0307512_1003013213300030522EctomycorrhizaVNKRNINKLDKNIVMMKSINKRLMKAKLKHYKNAKKKS
Ga0307512_1011268013300030522EctomycorrhizaNINKLDKNIVMMKSINKRLMKAKLKHYKNTKKESKNMILI
Ga0307512_1015981613300030522EctomycorrhizaDKNIVMIKSINKRLMKAKLKHYKNTKKESKNMILI
Ga0307512_1018147713300030522EctomycorrhizaKKNINKLDKNIVMMKSINKRLMKAKLKHYKNIKKEELSVVG
Ga0307512_1021023023300030522EctomycorrhizaMKKKNINKLDMNIVMMKSINKRLMKAKLKHYKNIKKESKNMILI
Ga0307512_1021122913300030522EctomycorrhizaMNKRNINRLDKNIVMMKNINKRLLKAKLKHYKITKKKNKS
Ga0307512_1026915313300030522EctomycorrhizaLDKNIVMMKSINKRLMKAKLKHYKNTKKESKNMILI
Ga0307512_1041347623300030522EctomycorrhizaMKKNNINKLDKNIVMMKSINKRLMKVKLKHYKNIKKESKNMILI
Ga0307512_1041509013300030522EctomycorrhizaKNINKLDKNIVMMKIINKRLMKAELKHYKDIKKESKNMILI
Ga0307513_1002386593300031456EctomycorrhizaMEKRNINKLDKNIVMMKSINKRLMKAKLKHYKNIKKESKNMILI
Ga0307513_1004225523300031456EctomycorrhizaMKKININKLDKNIVMMKSINKRLIKVKLKHYKNTKKESKNMILI
Ga0307513_1007025413300031456EctomycorrhizaDKNIVMMKSINKRLMKAKLKHYKNTKKESKNMILI
Ga0307513_1074634113300031456EctomycorrhizaVKKRNINKLDMNIVMMKSINKRLMKARLKHYKNTK
Ga0307509_1003616143300031507EctomycorrhizaMNKRNINRLDKNIVMMKNVNKRLMKAELKHYKITKKENKSKILM
Ga0307509_1022131233300031507EctomycorrhizaINKLDKNIVMMKSINKRLMRAKLKHYKNIKKESKNMILI
Ga0307509_1027520413300031507EctomycorrhizaKQDKNIVMMKSINKRLMKAKLKHYKNIKKESKNMILI
Ga0307509_1031261233300031507EctomycorrhizaMIKKRIINKLDKNIVMMKGINKRLMKAKLMHYKNIKKESKNMIWI
Ga0307509_1059467413300031507EctomycorrhizaNKLDKNIVMMKNINKRLMKAKLKHYKNTKKESKNMILI
Ga0307509_1066731613300031507EctomycorrhizaNINKLDKNIVMMKNINKRLMKAKLKHYKNIKKESKNMILI
Ga0307508_1005506133300031616EctomycorrhizaMNKRNINRLDKNIVMMKNINKRLMKTKLKHYKITKKENKSKILI
Ga0307508_1006211323300031616EctomycorrhizaMNKRNINRLDKNIVKMKNINKRLMKAELKHYKITKKENKSNILI
Ga0307508_1007625173300031616EctomycorrhizaLNIVKKRNINKLDMNIVMMKSINKRLMKARLKHYKNTKKENKNMILI
Ga0307508_1015045113300031616EctomycorrhizaMNKRNINKLDKNIVVMKSINKILMKAKHKHYKNTKKESKNMILI
Ga0307508_1019312413300031616EctomycorrhizaMIKNRNINKLDKNIVMMKNINKRLMRAKLKHYKNTKK
Ga0307508_1019645513300031616EctomycorrhizaMKKKNINELDKNIVMMKSINKRLMKAKLNHYKNIKKESKNMILI
Ga0307508_1020047613300031616EctomycorrhizaQEKNIVMMKSINKRLMKAKFKHYKNIKKESKNMILISKPR
Ga0307508_1033721423300031616EctomycorrhizaKININKLDKNIVMMKSINKRLMKAKLKHYKNTKKESKNVILI
Ga0307508_1041390413300031616EctomycorrhizaMKKININKLDKNIVMMKSINKRLMKAKLKHYKNTKKESKNVIL
Ga0307508_1044808513300031616EctomycorrhizaMNKRNINRLDKNIVKMKNINKRLMKTELKHYKITKKVNKSNILI
Ga0307508_1057919713300031616EctomycorrhizaRNMNKLDKNIVMMKSINKRLMKAKLKHYKNTNKESKNMILI
Ga0307508_1073996813300031616EctomycorrhizaMIKKRNINKLDKNIVMMKSINKRLMRAKLEHYKSTKKESNNMILI
Ga0307514_1005637713300031649EctomycorrhizaMNKRNINRLDKNVVMMKNVNKRLMKAELKHYKITKKENKSKILI
Ga0307514_1006506323300031649EctomycorrhizaMNKRNINRLNKNIVTIKNINKRLMKAELKHYKIIKKENKSKILI
Ga0307514_1013796413300031649EctomycorrhizaMIKKRNINKLDRNIVTMKSINKRLMRAKLKHYKNTKKESKNMILI
Ga0307514_1031222923300031649EctomycorrhizaKLDKNIVMMKSINKRLMKTKLKHYKNRKKESKNMILI
Ga0307514_1055163823300031649EctomycorrhizaNKLDKNIVMIKSINKRLMKAKLKHYKNTKKKSKNMILI
Ga0307516_1001790813300031730EctomycorrhizaMIKKRNINKLDKNIVIMKSINKRLMGAKLKHYKNIKKESKNMILI
Ga0307516_1006755323300031730EctomycorrhizaMIKKRIINKLDKNIVMMKSINKRLLXAQLKHYKNIKKKRARTXSXSENQDA
Ga0307516_1023975623300031730EctomycorrhizaKIDMNIVMMKSINKRLMKAKLKHYKNTKKESKNMILI
Ga0307516_1037791323300031730EctomycorrhizaKLDKNIVMMKNINKRLMKAKLKHYKNTKKESKNMILI
Ga0307516_1045048233300031730EctomycorrhizaMKKKNINKLDKNIVMMTSINKRLMKAKLKHYKNIKKESKNMILI
Ga0307516_1063745113300031730EctomycorrhizaINKLDKNIVMMKSINKRLMKAKLKHYKNTRKKARI
Ga0307516_1074246213300031730EctomycorrhizaVKKRNINKLDKNIVMMKNINKRLMKAKLKHYKNTKKES
Ga0307518_1006679623300031838EctomycorrhizaLNMIKKRNINKLDKNIVMMKIINKILMRAKLKHYKNIKRESKNMILIGKL
Ga0307518_1018017513300031838EctomycorrhizaDKNIVMMKGINKRLMIAKLKHYKNTKKESKNMILI
Ga0325403_100027473300032354XylemMKKININKLDKNIVMMKSINKRLMKAKLKHYKNTKKESKNMILI
Ga0325403_100305043300032354XylemMKKKNINKLDKNIVMMKDINKRLMKGKLKYYKNIMKESKNMILILKPR
Ga0325403_103573213300032354XylemMNKRNINKLDKNIVMIKSINKRLMKAKLKHYKNTKKESKNMILI
Ga0325403_107089113300032354XylemMNKRNINRLDKNIVMMKNINKRLRKAELKHYKITKKENKSKILI
Ga0325401_103371913300032355XylemMNKRNINRLDKNIVMMKNINKRLRKAELKHYKITKKENK
Ga0325401_103382713300032355XylemMKKININKLDKNIVMMKIINKRLVKAKLKHYKNTRKESKNMILI
Ga0325401_113098513300032355XylemLKIMNKRNINRLDKNIVMMKNINKRLRKAELKHYKITKKENKSKILI
Ga0325400_101750683300032374XylemMKKININKLDKNIVMMKSINKRLMKAKIKHYKNTKKESKNMILI
Ga0325400_103018813300032374XylemMSSVTNMIKKRNINKLDKNIIMMKSINKRLMRANLKHYKNTKKESKNMILI
Ga0325400_104000913300032374XylemVNKRNINKLDKNIVMMKSINKRLMKAKLKHYKNTKK
Ga0325400_104503143300032374XylemMNKRNINKLDKNIVMIKSINKRLIKAKLKHYKNTKKESKNMILI
Ga0325400_119774213300032374XylemMIKKRNIHKLDKNIVMMKSINKRLIRAKLKHNRNIKKESKNMILI
Ga0325405_100155753300032389XylemMTKRNINRLDKNIVMMKNINKRIMKAELKHNKITKKENKRKILI
Ga0325405_103384143300032389XylemNINKLDKNIVMMKSINKRLMKAKLKHYKNIKKESKNMILI
Ga0325405_107456013300032389XylemNKLDKNIVTMKNINKRLMKAKLKHYKNIKKERKNMILI
Ga0325404_102926943300032390XylemMKKININKLNKNIVMMKSINNRLMKAKLKHYKNTKKESKNMS
Ga0325404_106579623300032390XylemMIKKRNIHKLDKNIVMMKSINKRLIRAKLKHYKNIKKESKNMILI
Ga0307507_1001041923300033179EctomycorrhizaMNKRNINRLDKNVVMMKNVNKRLMKAELKHYKITKKENKSKILM
Ga0307507_1016239523300033179EctomycorrhizaINKLHKNIVMMKSINKRLMKAKLKQYKNTKKESKNMILI
Ga0307507_1017939513300033179EctomycorrhizaMIKKRNINKLDKNIVMMKSINKRLMRAKLKHYKSTKKESNNMILI
Ga0307507_1020559113300033179EctomycorrhizaDKNIVIMKSINKRLMGAKLKHYKNIKKESKNMILI
Ga0307507_1023890513300033179EctomycorrhizaMIKKININKLDKNIVMMKSINKRLMRAKLKYYKNTKKESKNMILI
Ga0307507_1024051923300033179EctomycorrhizaMIKNRNINKLDNNIVMMKSINKRLMRAKLKHYKHTKKESKNMILI
Ga0307507_1032526213300033179EctomycorrhizaNIMKKININKLDKNIVMMKSINKRLMKAKLKHYKNTKKESKNVILI
Ga0307507_1047192023300033179EctomycorrhizaKNINKLDKNIVMMKSINKRLMKAKLKHYKNIKKESKNMILI
Ga0307507_1052926413300033179EctomycorrhizaNIMKKININKLDKNIVMMKSINKRLMKAKLKHYKNTKKESKNMILI
Ga0307507_1058557213300033179EctomycorrhizaNKRNINRLDKNIVMMKNINKRLMKAELKHYKITKKENKSKILI
Ga0307510_1003314193300033180EctomycorrhizaNMIKKRNINKLDKNIVMMKSINKRLMKAKLKHYIYIYRERESKNMILI
Ga0307510_1011190353300033180EctomycorrhizaKNIVMMKSINKRLMKAKLKHYKNIKKESKNMILISKPR
Ga0307510_1037336113300033180EctomycorrhizaDKNIVMMKSINKRLMKAKLKHYKNIKKESKNMILI
Ga0325419_012614_3251_33883300034389LeafMIKKRNINKLDKNIVMMKSTNKRLMGAKLKHYKNIKKESKNMILI


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