Metagenome / Metatranscriptome Family F088063

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F088063
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	49 residues
Representative Sequence	MKRRGLVAIIALAMSFPVGAAEQQSEQSLGSQQQTYTPSLAVVMGLIQVSH
Number of Associated Samples	82
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	99.08 %
% of genes near scaffold ends (potentially truncated)	95.41 %
% of genes from short scaffolds (< 2000 bps)	80.73 %
Associated GOLD sequencing projects	77
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (63.303 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (44.037 % of family members)
Environment Ontology (ENVO)	Unclassified (58.716 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (46.789 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 56.86% β-sheet: 0.00% Coil/Unstructured: 43.14%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF00484	Pro_CA	22.02
PF13367	PrsW-protease	8.26
PF00881	Nitroreductase	5.50
PF04392	ABC_sub_bind	3.67
PF07883	Cupin_2	0.92
PF09361	Phasin_2	0.92
PF16694	Cytochrome_P460	0.92
PF14534	DUF4440	0.92
PF12681	Glyoxalase_2	0.92
PF03734	YkuD	0.92
PF02518	HATPase_c	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG0288	Carbonic anhydrase	Inorganic ion transport and metabolism [P]	22.02
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	3.67
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	0.92
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	63.30 %
Unclassified	root	N/A	36.70 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	63.30 %
Unclassified	root	N/A	36.70 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	63.30 %
Unclassified	root	N/A	36.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.70 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	34.86 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	9.17 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.70 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	22.94 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	9.17 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.92 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.70 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	13.76 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	9.17 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	7.34 %
Epsilonproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria	0.92 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.70 %
unclassified Cyanobacteria	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria	9.17 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	4.59 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4.59 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	2.75 %
Campylobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → Campylobacterales	0.92 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.92 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.70 %
Cyanobacteria bacterium 13_1_20CM_4_61_6	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_20CM_4_61_6	9.17 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4.59 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.75 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	2.75 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.92 %
Thiovulaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → Campylobacterales → Thiovulaceae	0.92 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.70 %
Cyanobacteria bacterium 13_1_20CM_4_61_6	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_20CM_4_61_6	9.17 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4.59 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.75 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	2.75 %
Sulfuricurvum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → Campylobacterales → Thiovulaceae → Sulfuricurvum	0.92 %
Mesorhizobium amorphae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium amorphae	0.92 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.70 %
Cyanobacteria bacterium 13_1_20CM_4_61_6	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_20CM_4_61_6	9.17 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4.59 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.75 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	2.75 %
Mesorhizobium amorphae CCBAU 01583	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium amorphae → Mesorhizobium amorphae CCBAU 01583	0.92 %
Sulfuricurvum kujiense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → Campylobacterales → Thiovulaceae → Sulfuricurvum → Sulfuricurvum kujiense	0.92 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000655\|AF_2010_repII_A100DRAFT_1083898	Not Available	559	Open in IMG/M
3300000793\|AF_2010_repII_A001DRAFT_10011304	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2142	Open in IMG/M
3300000956\|JGI10216J12902_103896080	Not Available	518	Open in IMG/M
3300005332\|Ga0066388_100280524	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2309	Open in IMG/M
3300005332\|Ga0066388_104916980	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	679	Open in IMG/M
3300005332\|Ga0066388_105019186	Not Available	672	Open in IMG/M
3300005332\|Ga0066388_105624358	Not Available	634	Open in IMG/M
3300005363\|Ga0008090_10130280	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	557	Open in IMG/M
3300005437\|Ga0070710_11054022	All Organisms → cellular organisms → Bacteria → Proteobacteria	595	Open in IMG/M
3300005468\|Ga0070707_100685514	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	987	Open in IMG/M
3300005518\|Ga0070699_100053241	All Organisms → cellular organisms → Bacteria → Proteobacteria	3503	Open in IMG/M
3300005764\|Ga0066903_100067867	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4530	Open in IMG/M
3300005764\|Ga0066903_101511327	Not Available	1268	Open in IMG/M
3300005764\|Ga0066903_102092282	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1089	Open in IMG/M
3300005764\|Ga0066903_107924070	Not Available	545	Open in IMG/M
3300005764\|Ga0066903_108313278	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium amorphae → Mesorhizobium amorphae CCBAU 01583	530	Open in IMG/M
3300005764\|Ga0066903_108803690	Not Available	512	Open in IMG/M
3300006028\|Ga0070717_12132489	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → Campylobacterales → Thiovulaceae → Sulfuricurvum → Sulfuricurvum kujiense	504	Open in IMG/M
3300009792\|Ga0126374_11907283	Not Available	500	Open in IMG/M
3300010043\|Ga0126380_11753612	Not Available	560	Open in IMG/M
3300010048\|Ga0126373_10426714	Not Available	1356	Open in IMG/M
3300010358\|Ga0126370_12037087	All Organisms → cellular organisms → Bacteria → Proteobacteria	562	Open in IMG/M
3300010358\|Ga0126370_12410983	Not Available	523	Open in IMG/M
3300010359\|Ga0126376_10335235	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1333	Open in IMG/M
3300010359\|Ga0126376_11718502	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	663	Open in IMG/M
3300010360\|Ga0126372_12016659	Not Available	624	Open in IMG/M
3300010361\|Ga0126378_10948822	Not Available	965	Open in IMG/M
3300010361\|Ga0126378_11681901	Not Available	721	Open in IMG/M
3300010366\|Ga0126379_12377933	All Organisms → cellular organisms → Bacteria → Proteobacteria	629	Open in IMG/M
3300010366\|Ga0126379_13795258	Not Available	506	Open in IMG/M
3300010863\|Ga0124850_1043316	All Organisms → cellular organisms → Bacteria	1426	Open in IMG/M
3300012203\|Ga0137399_11263842	All Organisms → cellular organisms → Bacteria	621	Open in IMG/M
3300012361\|Ga0137360_10765635	All Organisms → cellular organisms → Bacteria	830	Open in IMG/M
3300012923\|Ga0137359_11512979	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	559	Open in IMG/M
3300012960\|Ga0164301_11673206	Not Available	531	Open in IMG/M
3300012971\|Ga0126369_13334705	All Organisms → cellular organisms → Bacteria	526	Open in IMG/M
3300012971\|Ga0126369_13425825	Not Available	519	Open in IMG/M
3300012987\|Ga0164307_11252297	Not Available	617	Open in IMG/M
3300016270\|Ga0182036_10222600	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1397	Open in IMG/M
3300016294\|Ga0182041_10992566	Not Available	759	Open in IMG/M
3300016294\|Ga0182041_11629410	Not Available	596	Open in IMG/M
3300016294\|Ga0182041_11811982	All Organisms → cellular organisms → Bacteria → Proteobacteria	566	Open in IMG/M
3300016341\|Ga0182035_12094101	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	514	Open in IMG/M
3300016422\|Ga0182039_10365944	Not Available	1215	Open in IMG/M
3300016422\|Ga0182039_11948869	Not Available	540	Open in IMG/M
3300018007\|Ga0187805_10422745	Not Available	620	Open in IMG/M
3300021479\|Ga0210410_11010504	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	721	Open in IMG/M
3300025910\|Ga0207684_11496799	All Organisms → cellular organisms → Bacteria	549	Open in IMG/M
3300025915\|Ga0207693_11484877	Not Available	500	Open in IMG/M
3300025922\|Ga0207646_10961141	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	756	Open in IMG/M
3300026494\|Ga0257159_1076925	Not Available	577	Open in IMG/M
3300031057\|Ga0170834_109888026	All Organisms → cellular organisms → Bacteria → Proteobacteria	571	Open in IMG/M
3300031543\|Ga0318516_10014648	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_20CM_4_61_6	3879	Open in IMG/M
3300031546\|Ga0318538_10005397	All Organisms → cellular organisms → Bacteria	4863	Open in IMG/M
3300031546\|Ga0318538_10136402	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1289	Open in IMG/M
3300031561\|Ga0318528_10014146	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_20CM_4_61_6	3695	Open in IMG/M
3300031564\|Ga0318573_10037686	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_20CM_4_61_6	2301	Open in IMG/M
3300031572\|Ga0318515_10020209	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_20CM_4_61_6	3136	Open in IMG/M
3300031572\|Ga0318515_10706079	Not Available	533	Open in IMG/M
3300031668\|Ga0318542_10075260	All Organisms → cellular organisms → Bacteria	1588	Open in IMG/M
3300031668\|Ga0318542_10770050	Not Available	504	Open in IMG/M
3300031680\|Ga0318574_10088305	All Organisms → cellular organisms → Bacteria	1702	Open in IMG/M
3300031713\|Ga0318496_10016104	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3630	Open in IMG/M
3300031713\|Ga0318496_10022681	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_20CM_4_61_6	3119	Open in IMG/M
3300031719\|Ga0306917_10097333	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	2103	Open in IMG/M
3300031747\|Ga0318502_10982203	Not Available	514	Open in IMG/M
3300031763\|Ga0318537_10186030	Not Available	773	Open in IMG/M
3300031765\|Ga0318554_10092854	All Organisms → cellular organisms → Bacteria	1691	Open in IMG/M
3300031768\|Ga0318509_10100516	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1559	Open in IMG/M
3300031771\|Ga0318546_10097015	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_20CM_4_61_6	1928	Open in IMG/M
3300031777\|Ga0318543_10267429	Not Available	763	Open in IMG/M
3300031778\|Ga0318498_10060131	All Organisms → cellular organisms → Bacteria	1695	Open in IMG/M
3300031798\|Ga0318523_10016142	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_20CM_4_61_6	3158	Open in IMG/M
3300031799\|Ga0318565_10468544	Not Available	609	Open in IMG/M
3300031819\|Ga0318568_10106401	All Organisms → cellular organisms → Bacteria	1684	Open in IMG/M
3300031833\|Ga0310917_10976009	Not Available	568	Open in IMG/M
3300031879\|Ga0306919_10023447	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3778	Open in IMG/M
3300031880\|Ga0318544_10020184	All Organisms → cellular organisms → Bacteria	2228	Open in IMG/M
3300031890\|Ga0306925_12196590	All Organisms → cellular organisms → Bacteria → Proteobacteria	513	Open in IMG/M
3300031893\|Ga0318536_10034272	All Organisms → cellular organisms → Bacteria	2393	Open in IMG/M
3300031893\|Ga0318536_10079104	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1628	Open in IMG/M
3300031897\|Ga0318520_10345049	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	903	Open in IMG/M
3300031910\|Ga0306923_11302704	Not Available	770	Open in IMG/M
3300031912\|Ga0306921_11613660	All Organisms → cellular organisms → Bacteria → Proteobacteria	704	Open in IMG/M
3300031912\|Ga0306921_11661530	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	692	Open in IMG/M
3300031912\|Ga0306921_11703489	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	681	Open in IMG/M
3300031912\|Ga0306921_11879327	Not Available	641	Open in IMG/M
3300031981\|Ga0318531_10055526	All Organisms → cellular organisms → Bacteria	1689	Open in IMG/M
3300032001\|Ga0306922_11914625	All Organisms → cellular organisms → Bacteria	580	Open in IMG/M
3300032025\|Ga0318507_10047177	All Organisms → cellular organisms → Bacteria	1679	Open in IMG/M
3300032035\|Ga0310911_10020391	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_20CM_4_61_6	3184	Open in IMG/M
3300032043\|Ga0318556_10071457	All Organisms → cellular organisms → Bacteria	1718	Open in IMG/M
3300032043\|Ga0318556_10337237	Not Available	788	Open in IMG/M
3300032044\|Ga0318558_10008841	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3723	Open in IMG/M
3300032051\|Ga0318532_10152347	Not Available	821	Open in IMG/M
3300032054\|Ga0318570_10285043	Not Available	750	Open in IMG/M
3300032055\|Ga0318575_10003705	All Organisms → cellular organisms → Bacteria	5161	Open in IMG/M
3300032059\|Ga0318533_10259441	All Organisms → cellular organisms → Bacteria	1256	Open in IMG/M
3300032060\|Ga0318505_10504725	All Organisms → cellular organisms → Bacteria → Proteobacteria	570	Open in IMG/M
3300032060\|Ga0318505_10605792	All Organisms → cellular organisms → Bacteria	515	Open in IMG/M
3300032063\|Ga0318504_10006256	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_20CM_4_61_6	3841	Open in IMG/M
3300032064\|Ga0318510_10036086	All Organisms → cellular organisms → Bacteria	1684	Open in IMG/M
3300032064\|Ga0318510_10485216	Not Available	534	Open in IMG/M
3300032068\|Ga0318553_10022791	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_20CM_4_61_6	2931	Open in IMG/M
3300032076\|Ga0306924_11443763	All Organisms → cellular organisms → Bacteria → Proteobacteria	732	Open in IMG/M
3300032090\|Ga0318518_10702636	All Organisms → cellular organisms → Bacteria → Proteobacteria	514	Open in IMG/M
3300032091\|Ga0318577_10290480	Not Available	782	Open in IMG/M
3300032261\|Ga0306920_102991528	Not Available	638	Open in IMG/M
3300033290\|Ga0318519_10064291	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1883	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	99.08%
Aquatic	Environmental → Aquatic	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	99.08%
Freshwater	Environmental → Aquatic → Freshwater	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	82.57%
Loam	Environmental → Terrestrial → Soil → Loam	16.51%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.92%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	63.30%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.43%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	10.09%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.42%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.92%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.92%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	44.04%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	16.51%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	12.84%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	10.09%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.42%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.75%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.83%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.92%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000655	Forest soil microbial communities from Amazon forest - 2010 replicate II A100	Environmental	Open in IMG/M
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010863	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (PacBio error correction)	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026494	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-07-A	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A100DRAFT_10838981	3300000655	Forest Soil	MKRRGLVAIIALAMSFSVGAAEQQSEQSLGSQQQTYIPSLAVVMGL
AF_2010_repII_A001DRAFT_100113041	3300000793	Forest Soil	MNMKRRGLVAITALAMSFPVGAAEQQPEQSLGSQQQTYTPSLAVVMGLIQVSHFKLWLA
JGI10216J12902_1038960801	3300000956	Soil	MKHRGLAAIIALAMSFPVGAAEQPSEQSLGSQQQTYTPSLAVVMGLI
Ga0066388_1002805246	3300005332	Tropical Forest Soil	MKHRGLVAIVALAMSFPVGAAEQQSEQPSGSQQQTYTPSLAV
Ga0066388_1049169801	3300005332	Tropical Forest Soil	MKHRGLVAIIALAMSFPVGAAEQPSEQSLGSQQQTYTPSLAVVMGLIQVSHFKLWLAGNLRNW
Ga0066388_1050191861	3300005332	Tropical Forest Soil	MKRRGLVIILALAMSFPVAAAEQQSEQSLGRQQQTYTPSLAVVMGLIQVSHFKLWLAGNLRN
Ga0066388_1056243582	3300005332	Tropical Forest Soil	MKRRGLVIILALAMSFPVAAAEKQSEQSLGRQQQTYTPSLAVVMGLIQVSHFKLWLAGNLRN
Ga0008090_101302802	3300005363	Tropical Rainforest Soil	MKRRGLVIIVVSAMSFPVAAAEKQSEQSLGRQQQTYTPSLAVVMGLIQI
Ga0070710_110540221	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MKRRRVAIILALAMSFPVSAAEQQSEQPSGNQQQNYTPSLAVMMGMIQVSHFKLWLAGN
Ga0070707_1006855142	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MKRRGLVIILALAMSFPVAAAEKQSEQSLGRQQQTYTPSLAVVMGLIQLSHFKLWLAG*
Ga0070699_1000532411	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MKRRGLVIILASAMSFPVAAAEKQSEQSLGRQQQTYTPSLAVVMG
Ga0066903_1000678676	3300005764	Tropical Forest Soil	MKRRGLVIILASAMSFLVAAAEKQSEQSLGRQQQTYTPSLAVVMGLIQVSHFKL*
Ga0066903_1015113271	3300005764	Tropical Forest Soil	MKRRGLVAIIALAMSFPVGAAEQQSEQSLGSQQQTYTPSLAVVMGLIQVSHF
Ga0066903_1020922823	3300005764	Tropical Forest Soil	MKRRGLVIILALAMSFPVAAAEQQSEQSLGRQQQTYTPSLA
Ga0066903_1079240702	3300005764	Tropical Forest Soil	MKHRGLVAIIALAMSFPVGAAEQPSERSLGSLQQTYTPSLAVVMGLIQVSHFKLWLAGNLRNWPL
Ga0066903_1083132781	3300005764	Tropical Forest Soil	MKRCSVVITIALAMSFPVAAAEKQSDQLGSQQQTYTPSLAVVMGLIQV
Ga0066903_1088036901	3300005764	Tropical Forest Soil	MKRRGLVAIIALAMSFPVGAAEQQSEQSLGSQQQTYTPSLAVVMG
Ga0070717_121324891	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MKRRGLVIILALAMSFPVAAAEKQSEQSSGSQQQTYTPRLAAVMGLIQISHFKLWLAGN
Ga0126374_119072831	3300009792	Tropical Forest Soil	MSFPVAAAEKQSEQSLGRQQQTYTPSLAVVMGLIQISHFKLWLAGNLRNWPL
Ga0126380_117536121	3300010043	Tropical Forest Soil	MKRRGLVAIIALAMSFSVGAAEQQSEQSLGSQQQTYTPSLAVV
Ga0126373_104267142	3300010048	Tropical Forest Soil	MKRRGLVIILVSAMSFPVAAAEKQSEQSLGRQQQTYTPSLAVVMGLIQVSHFKL*
Ga0126370_120370871	3300010358	Tropical Forest Soil	MKRRGLVAIIALAMSFSVGAAEQQSEQSLGSQQPTYIPSLAVVMGLIQVSHFKLWL
Ga0126370_124109831	3300010358	Tropical Forest Soil	MKHRGLVAIIALAMSFPVGAAEQPSERSLGSQQQTYTPSLAVVMGLIQVSHFKLWL
Ga0126376_103352351	3300010359	Tropical Forest Soil	MKRRGLVAIIALAMSFSVGAAEQQSEQSLGSQQQTYIPSLAVVMG
Ga0126376_117185021	3300010359	Tropical Forest Soil	MKHRGLVAIIALAMSFPVGAAEQQSEQSLGSQQQTY
Ga0126372_120166591	3300010360	Tropical Forest Soil	MKHRGLVAIIALAMSFPVGAAEQPSERSLGSLQQTYTPSLAVVMGLIQVSHFKLWL
Ga0126378_109488221	3300010361	Tropical Forest Soil	MKRRGLAAIIALAMSFPVGAAEQQSEQSLGSQQQTYTPSLAVMMGLIQVSHF
Ga0126378_116819011	3300010361	Tropical Forest Soil	MNMKRRGLVAITALAMSFPVGTAEQQPEQSLGSQQQTYTPSLAVVMGLIQVSHFKLWLAGNLRN
Ga0126379_123779332	3300010366	Tropical Forest Soil	MNMKRRGLVAITALAMSFPVGAAEQQPEQSLGSQQQTYTPSLAV
Ga0126379_137952581	3300010366	Tropical Forest Soil	MKRRGLVAIIALAMSFPVGAAEQQSEQSLGSQQQTYIPSLA
Ga0124850_10433163	3300010863	Tropical Forest Soil	MKRRGLVAIIALAMSFPVGAAEQQPEQSLGSQQQTYTPSL
Ga0137399_112638421	3300012203	Vadose Zone Soil	MKHRGLVAIIALAISFPVGAAGQQSEQSLGSQQQTYTPSLAVVMGLIQVSH
Ga0137360_107656353	3300012361	Vadose Zone Soil	MKHRGLVAIIALAMSFPVGAAGQQSEQSLGSQQQTYTPSLAVVMGLIQVSHFKLWL
Ga0137359_115129791	3300012923	Vadose Zone Soil	MKRRGLVAIIALAMSFPVGAAEQQSEQSLGSQQQTYTPSLAVVMGL
Ga0164301_116732062	3300012960	Soil	MKRRRVAIILALAMSFPVSAAEQQSEQPSGNQQQNYTPSLAVMMGMIQVSHFKLWLAGNLRN
Ga0126369_133347051	3300012971	Tropical Forest Soil	MKRRGLVAITALAMSFSVGAAEQQSEQSLGSQQQTYIPSLAVV
Ga0126369_134258251	3300012971	Tropical Forest Soil	MKRRGLVAIIALAMSFPVGAAEQQSEQSLGSQQQTYTPSLAVVMGLIQV
Ga0164307_112522971	3300012987	Soil	MARRRVVIILALAMSFPVAAAEQQSEQSSGSQQQTYIPSLAVEMGLIQVSHFKLWLAGS
Ga0182036_102226003	3300016270	Soil	MKRRGLVVIIALAMSFSVGAAEQQSEQSLGSQQQTYTPSLAVVMGLIQVSHFKLWLAG
Ga0182041_109925662	3300016294	Soil	MKRRGLVAIVALAMSFPVGAAEQQSEQSSGSQQQTYTPSLAVEMGLIQVSHFKLWLAGNLRNW
Ga0182041_116294101	3300016294	Soil	MKRRGLVAITALAMSFPVGAAEQQSEQSSRGQQQTYTPSLAVVMGLIQVSHFKLWLAG
Ga0182041_118119822	3300016294	Soil	MKRRGLVVIIALAMSFSVCAAEQQSEQSLGSQQQTYTPSLAVVMGLIQVSHFKLWL
Ga0182035_120941012	3300016341	Soil	MKRRGLVVIIALAMSFSVGAAEQQSEQSLGSQQQTYTPSLAVVMGLIQVSHFKLWLAGNLRNWP
Ga0182039_103659442	3300016422	Soil	MKHRGLVAVIALAMSFPVGAAEQQSEQSLGSQQQTYT
Ga0182039_119488691	3300016422	Soil	MKHRGLAVIIALAMSFPVGAAEQPSEQSLGSQPQTYTPSLAVVMGLIQVSHFKLWLAGNLRNWP
Ga0187805_104227451	3300018007	Freshwater Sediment	MKRHGFLTILALAMSFSVGAAQPQSEQPSGRPPTYPPRIAVVMELVQVSHFKLWLAGNLRNWPL
Ga0210410_110105042	3300021479	Soil	MKHRGLVAIIAFAMSFPVGAAEQQSKQSLGSQQQTYSPNLAVVMGLIQTSHFKL
Ga0207684_114967993	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MKRRGLVIILALAMSFPVAAAEKQSEQSLGRQQQT
Ga0207693_114848771	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MKRRRVAIILALAMSFPVSAAEQQSEQPSGNQQQNYTPSLAVMMGMIQVS
Ga0207646_109611412	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MKRRGLVIILALAMSFPVAAAEKQSEQSLGRQQQTYTPSLAVVMGLIQLSHFKLWLAG
Ga0257159_10769252	3300026494	Soil	MKRRGLVIILASAMSFPVAAAEKQSEQSLGRQQQTYTPSLAVVMGLIQLSHFKLWLAGNLRNWP
Ga0170834_1098880261	3300031057	Forest Soil	MKRRGLVAIIALAMSFPVGAAEQQSEQSLGSQQQTYSP
Ga0318516_100146484	3300031543	Soil	MKHRGLVAIIALAMSFPVGAAEQQSEQSLGSQQQTYTPSLAVVMGLIQVSHFKLWLA
Ga0318538_100053977	3300031546	Soil	MKHRGLVAIIALAMSFPVGAAEQQSEQSLGSQQQTYTPSLAVVM
Ga0318538_101364023	3300031546	Soil	MKRRGLVAITALAMSFPVGAAEQQSEQSSGGQQQTYTPSLAVVMGLIQVS
Ga0318528_100141464	3300031561	Soil	MKHRGLVAIIALAMSFPVGAAEQQSEQSLGSQQQTYT
Ga0318573_100376863	3300031564	Soil	MKHRGLVAIIALAMSFPVGAAEQQSEQSLGSQQQT
Ga0318515_100202094	3300031572	Soil	MKHRGLVAIIALAMSFPVGAAEQQSEQSLGSQQQTYTPSLAVVMGLIQVSHF
Ga0318515_107060792	3300031572	Soil	MKRRGLVAITALAMSFPVGAAEQQSEQSSGGQQQTYTPS
Ga0318542_100752602	3300031668	Soil	MKHRGLVAIIALAMSFPVGAAEQQSEQSLGSQQQTYTPSLAVVMGLIQVSHFKLWLAGNLRN
Ga0318542_107700502	3300031668	Soil	MKRRGLVAIIALAMCFPVSAAEQQSEQSLGSQQQTYTPSLAVVMG
Ga0318574_100883051	3300031680	Soil	MKRRGLVAIIALAMSFPVGAAEQQSEQSLGSQQQTYTPSLAVVMGLIQVSH
Ga0318496_100161046	3300031713	Soil	MKRRGLVAIIALAMSFPVGAAEQQSEQSLGSQQRTYT
Ga0318496_100226811	3300031713	Soil	MKHRGLVAIIALAMSFPVGAAEQQSEQSLGSQQQTYTPSLAV
Ga0306917_100973331	3300031719	Soil	MKRRGLVAITALAMSFPVGAAEQQSEQSSRGQQQTYTPSLAVVMGLIQVSHFKLWLAGNL
Ga0318502_109822031	3300031747	Soil	MKRRGLVAITALAMSFPVGAAEQQSEQSSGGQQQTYTPSLAVVMGLIQVSH
Ga0318537_101860302	3300031763	Soil	MKRRGLVAITALAMSFPVGAAEQQSEQSSGGQQQTYTPSLAVVM
Ga0318554_100928541	3300031765	Soil	MKRRGLVAIIALAMSFPVGAAEQQSEQSLGSQQQTYTPSLAVVM
Ga0318509_101005162	3300031768	Soil	MKRRGLVIILASAMSFPVAAAEKQSEQSLGRQQQNYTPSLAVVM
Ga0318546_100970153	3300031771	Soil	MKHRGLVAIIALAMSFPVGAAEQQSEQSLGSQQQTYTPSLAVVMGLIQV
Ga0318543_102674292	3300031777	Soil	MKRRGLVAITALAMSFPVGAAEQQSEQSSGGQQQTYTPSLAVVMGLIQVSHFKLWLAGNL
Ga0318498_100601313	3300031778	Soil	MKRRGLVAIIALAMSFPVGAAEQQSEQSLGSQQQTYTPSLA
Ga0318523_100161424	3300031798	Soil	MKHRGLVAIIALAMSFPVGAAEQQSEQSLGSQQQTYTPSLAVVMGLIQVSHFKLWL
Ga0318565_104685441	3300031799	Soil	MKRRGLVAIIALAMSFPVGAAEQQSEQSSGGQQQTYTPSLAVVMGLI
Ga0318568_101064013	3300031819	Soil	MKRRGLVAIIALAMSFPVGAAEQQSEQSLGSQQQTYT
Ga0310917_109760091	3300031833	Soil	MKRRGLVAIIALAMSFPVGAAAQQSEQSLGSQQQTYTPSLAVVMGLIQVSHFKLWLAGN
Ga0306919_100234476	3300031879	Soil	MKRRGLVAIIALAMSFSVGAVEQQSEQSLGSQQQTYTPSLAVV
Ga0318544_100201843	3300031880	Soil	MKRRGLVAIIALAMSFPVGAAEQQSEQSLGSQQQTYTPSLAVVMGLI
Ga0306925_121965901	3300031890	Soil	MKRRGLVAIIALAMSFSVGAVEQQSEQSLGSQQQTYTPS
Ga0318536_100342721	3300031893	Soil	MKRRGLVAIIALAMSFPVGAAEQQSEQSLGSQQQTY
Ga0318536_100791045	3300031893	Soil	MKRRGLVAITALAMSFPVGAAEQQSEQSSRGQQQTYTPSLAVVMGLI
Ga0318520_103450492	3300031897	Soil	MKRRGLVIILASAMSFPVAAAEKQSEQSLGRQQQNYT
Ga0306923_113027041	3300031910	Soil	MKRRGLVAIIALAMSFPVGAAEQQSEQSSGGQQQTYTPSLAV
Ga0306921_116136601	3300031912	Soil	MKRRGLVVIIALAMSFSVGAAEQQSEQSLGSQQQTYTPSLAVVMGLIQVSHFKLWLAGNLRNW
Ga0306921_116615301	3300031912	Soil	MKRRSVVIIIALAMSFPVAAAEKQSDQLGSQQQTYTPSLAV
Ga0306921_117034893	3300031912	Soil	MKHRGLVAIIALAMSFPVGAAEQQSEQSLGSQQQTYTPSL
Ga0306921_118793272	3300031912	Soil	MKRRRAVIILALAMSFPVAAAEQQSAQPSGAQSQQNYTPSLALVMGTIQVSHFKLWLAGNLRN
Ga0318531_100555261	3300031981	Soil	MKRRGLVAIIALAMSFPVGAAEQQSEQSLGSQQQTYTPS
Ga0306922_119146252	3300032001	Soil	MKHRGLVAVIALAMSFPVGAAEQQSEQSLGSQQQTYTPSLAVV
Ga0318507_100471773	3300032025	Soil	MKRRGLVAIIALAMSFPVGAAEQQSEQSLGSQQQT
Ga0310911_100203914	3300032035	Soil	MKHRGLVAIIALAMSFPVGAAEQQSEQSLGSQQQTYTPSLAVVMGLIQVSHFKLWLAGNLRNW
Ga0318556_100714573	3300032043	Soil	MKRRGLVAIIALAMSFPVGAAEQQSEQSLGSQQQTYTPSLAVVMGLIQVSHFK
Ga0318556_103372371	3300032043	Soil	MKRRGLVAITALAMSFPVGAAEQQSEQSSRGQQQTYTPSLAVVMGLIQVSHFK
Ga0318558_100088417	3300032044	Soil	MKRRGLVAIIALAMSFPVGAAEQQSEQSLGSQQRTYTPSLAVVMGLIQVSHFK
Ga0318532_101523471	3300032051	Soil	MKRRGLVAIIALAMSFPVGAAAQQSEQSLGSQQQTYTPS
Ga0318570_102850432	3300032054	Soil	MKHRGLVAIIALAMSFPVGAAEQQSEQSLGSQQQTYTPS
Ga0318575_100037051	3300032055	Soil	MKHRGLVAIIALAMSFPVGAAEQQSEQSLGSQQQTYTPSLAVVMGLIQVSHFKLWLAGNL
Ga0318533_102594413	3300032059	Soil	MKHRGLVAIVALAMSFPVGAAEQQSEQPSGSQQQTYTPSLAVVMGLIQVSHFKLWLA
Ga0318505_105047251	3300032060	Soil	MKRRGLVAITALAMSFPVGAAEQQSEQSSGGQQQTYTPSLAVVMGLIQVSHFKLWLAGN
Ga0318505_106057922	3300032060	Soil	MKRRGLVAIIALATSFPVGAAEQQSEQSLGSQQQTYTPSLAVVMGLIQV
Ga0318504_100062561	3300032063	Soil	MKHRGLVAIIALAMSFPVGAAEQQSEQSLGSQQQTYTPSLAVVMGLIQVSHFK
Ga0318510_100360863	3300032064	Soil	MKRRGLVAIIALAMSFPVGAAEQQSEQSLGSQQQTYTPSLAV
Ga0318510_104852161	3300032064	Soil	MKRRGLVAIIALAMSFSVGAVEQQSEQSLGSQQQTYTPSLAVVMGLIQVSHFK
Ga0318553_100227913	3300032068	Soil	MKHRGLVAIIALAMSFPVGAAEQQSEQSLGSQQQTYTPSLAVVMGLIQVSHFKL
Ga0306924_114437631	3300032076	Soil	MKRRGLVAIIALAMSFPVGAAEQQSEQSLGSQQQTYTPSLTVVMGLIQVSHF
Ga0318518_107026362	3300032090	Soil	MKRRGLVAITAMSFPVGAAEQQSEQSSGGQQQTYTPSLA
Ga0318577_102904801	3300032091	Soil	MKRRGLVAIIALAMSFPVGAAAQQSEQSLGSQQQTY
Ga0306920_1029915281	3300032261	Soil	MKHRGLVAIVALAMSFPVGAAEQQSEQPSGSQQQTYTPSLAVVMGLIQVSHFKLW
Ga0318519_100642915	3300033290	Soil	MKRRGLVAIIALAMSFPVGAAEQQSEQSSGGQQQTYTPSLAVVMGLIQVSH

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F088063

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences