Metagenome Family F088064

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F088064
Family Type	Metagenome
Number of Sequences	109
Average Sequence Length	48 residues
Representative Sequence	QGPFEGHLGLYAGMRPHERVLVLLALLGGQQRVELPKDSIEAVRS
Number of Associated Samples	69
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	7.34 %
% of genes near scaffold ends (potentially truncated)	84.40 %
% of genes from short scaffolds (< 2000 bps)	94.50 %
Associated GOLD sequencing projects	64
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (50.459 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (51.376 % of family members)
Environment Ontology (ENVO)	Unclassified (75.229 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (51.376 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 26.03% β-sheet: 0.00% Coil/Unstructured: 73.97%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.41
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.41
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF03401	TctC	3.67
PF00583	Acetyltransf_1	3.67
PF04392	ABC_sub_bind	2.75
PF00582	Usp	1.83
PF01266	DAO	1.83
PF02357	NusG	1.83
PF00467	KOW	0.92
PF03354	TerL_ATPase	0.92
PF13565	HTH_32	0.92
PF00873	ACR_tran	0.92
PF12951	PATR	0.92
PF01391	Collagen	0.92
PF01695	IstB_IS21	0.92
PF13384	HTH_23	0.92
PF02875	Mur_ligase_C	0.92
PF13751	DDE_Tnp_1_6	0.92
PF01035	DNA_binding_1	0.92
PF01118	Semialdhyde_dh	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	3.67
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	2.75
COG0250	Transcription termination/antitermination protein NusG	Transcription [K]	1.83
COG0350	DNA repair enzyme Ada (O6-methylguanine-DNA--protein-cysteine methyltransferase)	Replication, recombination and repair [L]	0.92
COG1484	DNA replication protein DnaC	Replication, recombination and repair [L]	0.92
COG3695	Alkylated DNA nucleotide flippase Atl1, participates in nucleotide excision repair, Ada-like DNA-binding domain	Transcription [K]	0.92
COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	Mobilome: prophages, transposons [X]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	50.46 %
Unclassified	root	N/A	49.54 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	50.46 %
Unclassified	root	N/A	49.54 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	50.46 %
Unclassified	root	N/A	49.54 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.54 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	38.53 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	5.50 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.54 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	30.28 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	4.59 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.54 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	11.01 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	10.09 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.59 %
unclassified Blastocatellia	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia	0.92 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.54 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	6.42 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	4.59 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.59 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	2.75 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2.75 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.92 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.92 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	0.92 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.54 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	6.42 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	4.59 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.59 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	2.75 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.83 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.92 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	0.92 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.92 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.54 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	6.42 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	4.59 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.59 %
Mesorhizobium plurifarium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium plurifarium	2.75 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	1.83 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.92 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	0.92 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.92 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.54 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	6.42 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	4.59 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.59 %
Mesorhizobium plurifarium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium plurifarium	2.75 %
Bradyrhizobium sp. CCBAU 21365	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCBAU 21365	0.92 %
Bradyrhizobium sp. SRL28	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. SRL28	0.92 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.92 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	0.92 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.92 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_105448329	All Organisms → cellular organisms → Bacteria	1188	Open in IMG/M
3300004633\|Ga0066395_10862600	Not Available	546	Open in IMG/M
3300005332\|Ga0066388_102015684	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1035	Open in IMG/M
3300005332\|Ga0066388_103632553	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium plurifarium	787	Open in IMG/M
3300005764\|Ga0066903_100914278	Not Available	1590	Open in IMG/M
3300005764\|Ga0066903_101763161	Not Available	1181	Open in IMG/M
3300005764\|Ga0066903_102371758	All Organisms → cellular organisms → Bacteria	1026	Open in IMG/M
3300005764\|Ga0066903_107321630	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium plurifarium	570	Open in IMG/M
3300005764\|Ga0066903_107524265	Not Available	562	Open in IMG/M
3300005764\|Ga0066903_107875942	All Organisms → cellular organisms → Bacteria	547	Open in IMG/M
3300005937\|Ga0081455_10454375	All Organisms → cellular organisms → Bacteria → Proteobacteria	874	Open in IMG/M
3300005937\|Ga0081455_10591502	Not Available	725	Open in IMG/M
3300009792\|Ga0126374_11866934	Not Available	504	Open in IMG/M
3300010048\|Ga0126373_11540118	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	730	Open in IMG/M
3300010359\|Ga0126376_11304819	Not Available	746	Open in IMG/M
3300010398\|Ga0126383_11810363	Not Available	699	Open in IMG/M
3300010398\|Ga0126383_13185067	Not Available	536	Open in IMG/M
3300012971\|Ga0126369_12748856	Not Available	576	Open in IMG/M
3300013297\|Ga0157378_12715150	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	548	Open in IMG/M
3300015371\|Ga0132258_10236825	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4452	Open in IMG/M
3300015372\|Ga0132256_103259462	All Organisms → cellular organisms → Bacteria → Proteobacteria	546	Open in IMG/M
3300016270\|Ga0182036_10449990	Not Available	1012	Open in IMG/M
3300016270\|Ga0182036_11187715	Not Available	634	Open in IMG/M
3300016270\|Ga0182036_11697718	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	533	Open in IMG/M
3300016294\|Ga0182041_11433172	Not Available	635	Open in IMG/M
3300016319\|Ga0182033_11510252	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	606	Open in IMG/M
3300016404\|Ga0182037_10465612	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1054	Open in IMG/M
3300016422\|Ga0182039_10493889	All Organisms → cellular organisms → Bacteria	1056	Open in IMG/M
3300016445\|Ga0182038_11875459	Not Available	542	Open in IMG/M
3300018027\|Ga0184605_10479985	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	544	Open in IMG/M
3300018073\|Ga0184624_10066663	Not Available	1492	Open in IMG/M
3300018469\|Ga0190270_10394060	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1279	Open in IMG/M
3300018481\|Ga0190271_11920782	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	702	Open in IMG/M
3300021560\|Ga0126371_11843802	Not Available	725	Open in IMG/M
3300021560\|Ga0126371_13862640	Not Available	505	Open in IMG/M
3300031544\|Ga0318534_10219931	All Organisms → cellular organisms → Bacteria → Proteobacteria	1096	Open in IMG/M
3300031545\|Ga0318541_10202598	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1098	Open in IMG/M
3300031545\|Ga0318541_10433051	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	735	Open in IMG/M
3300031545\|Ga0318541_10546295	Not Available	648	Open in IMG/M
3300031545\|Ga0318541_10743459	Not Available	547	Open in IMG/M
3300031545\|Ga0318541_10776556	Not Available	534	Open in IMG/M
3300031564\|Ga0318573_10254947	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	935	Open in IMG/M
3300031572\|Ga0318515_10761105	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	511	Open in IMG/M
3300031573\|Ga0310915_10124157	All Organisms → cellular organisms → Bacteria → Proteobacteria	1764	Open in IMG/M
3300031640\|Ga0318555_10398837	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	745	Open in IMG/M
3300031668\|Ga0318542_10406335	Not Available	703	Open in IMG/M
3300031679\|Ga0318561_10469930	Not Available	692	Open in IMG/M
3300031681\|Ga0318572_10586165	Not Available	664	Open in IMG/M
3300031682\|Ga0318560_10367536	Not Available	777	Open in IMG/M
3300031713\|Ga0318496_10581286	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	619	Open in IMG/M
3300031713\|Ga0318496_10596417	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	610	Open in IMG/M
3300031719\|Ga0306917_10009798	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5454	Open in IMG/M
3300031719\|Ga0306917_11549983	Not Available	509	Open in IMG/M
3300031724\|Ga0318500_10578819	Not Available	568	Open in IMG/M
3300031744\|Ga0306918_10955437	Not Available	666	Open in IMG/M
3300031744\|Ga0306918_10960567	Not Available	664	Open in IMG/M
3300031747\|Ga0318502_10822178	All Organisms → cellular organisms → Bacteria	563	Open in IMG/M
3300031768\|Ga0318509_10830417	Not Available	511	Open in IMG/M
3300031770\|Ga0318521_10845466	Not Available	558	Open in IMG/M
3300031770\|Ga0318521_10969004	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	521	Open in IMG/M
3300031793\|Ga0318548_10019221	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2855	Open in IMG/M
3300031793\|Ga0318548_10168771	Not Available	1070	Open in IMG/M
3300031794\|Ga0318503_10134083	All Organisms → cellular organisms → Bacteria	795	Open in IMG/M
3300031795\|Ga0318557_10360100	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	669	Open in IMG/M
3300031795\|Ga0318557_10573997	All Organisms → cellular organisms → Bacteria	517	Open in IMG/M
3300031795\|Ga0318557_10589573	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium plurifarium	510	Open in IMG/M
3300031846\|Ga0318512_10285183	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	819	Open in IMG/M
3300031859\|Ga0318527_10503223	Not Available	517	Open in IMG/M
3300031879\|Ga0306919_10068926	Not Available	2403	Open in IMG/M
3300031879\|Ga0306919_10697004	Not Available	782	Open in IMG/M
3300031879\|Ga0306919_11005625	Not Available	637	Open in IMG/M
3300031890\|Ga0306925_11273239	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	732	Open in IMG/M
3300031894\|Ga0318522_10115918	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	999	Open in IMG/M
3300031897\|Ga0318520_10536821	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	724	Open in IMG/M
3300031910\|Ga0306923_10735556	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. SRL28	1095	Open in IMG/M
3300031910\|Ga0306923_11183592	Not Available	818	Open in IMG/M
3300031910\|Ga0306923_11327458	Not Available	761	Open in IMG/M
3300031912\|Ga0306921_11968259	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	623	Open in IMG/M
3300031941\|Ga0310912_10239285	Not Available	1395	Open in IMG/M
3300031941\|Ga0310912_10765829	Not Available	747	Open in IMG/M
3300031941\|Ga0310912_11440341	Not Available	520	Open in IMG/M
3300031945\|Ga0310913_10132791	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1709	Open in IMG/M
3300031945\|Ga0310913_10751791	Not Available	688	Open in IMG/M
3300031947\|Ga0310909_10509829	Not Available	1008	Open in IMG/M
3300031959\|Ga0318530_10316333	Not Available	646	Open in IMG/M
3300032001\|Ga0306922_11499956	All Organisms → cellular organisms → Bacteria → Proteobacteria	674	Open in IMG/M
3300032035\|Ga0310911_10570355	Not Available	656	Open in IMG/M
3300032041\|Ga0318549_10035606	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1987	Open in IMG/M
3300032052\|Ga0318506_10242794	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	797	Open in IMG/M
3300032059\|Ga0318533_10009921	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	5709	Open in IMG/M
3300032059\|Ga0318533_11395856	Not Available	511	Open in IMG/M
3300032064\|Ga0318510_10072057	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1268	Open in IMG/M
3300032064\|Ga0318510_10367875	Not Available	608	Open in IMG/M
3300032064\|Ga0318510_10425041	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	568	Open in IMG/M
3300032076\|Ga0306924_10899313	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	979	Open in IMG/M
3300032076\|Ga0306924_12403043	Not Available	531	Open in IMG/M
3300032076\|Ga0306924_12474079	Not Available	521	Open in IMG/M
3300032089\|Ga0318525_10237835	Not Available	936	Open in IMG/M
3300032091\|Ga0318577_10064390	All Organisms → cellular organisms → Bacteria → Proteobacteria	1668	Open in IMG/M
3300032091\|Ga0318577_10212213	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	926	Open in IMG/M
3300032091\|Ga0318577_10640740	Not Available	504	Open in IMG/M
3300032094\|Ga0318540_10041023	All Organisms → cellular organisms → Bacteria → Proteobacteria	2045	Open in IMG/M
3300032094\|Ga0318540_10356812	All Organisms → cellular organisms → Bacteria → Proteobacteria	706	Open in IMG/M
3300032094\|Ga0318540_10597901	Not Available	531	Open in IMG/M
3300032261\|Ga0306920_101748307	Not Available	879	Open in IMG/M
3300032261\|Ga0306920_103877970	Not Available	545	Open in IMG/M
3300033289\|Ga0310914_11466566	Not Available	585	Open in IMG/M
3300033290\|Ga0318519_10218274	All Organisms → cellular organisms → Bacteria → Proteobacteria	1093	Open in IMG/M
3300033290\|Ga0318519_10892244	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCBAU 21365	549	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.41%
Host-Associated	Host-Associated	4.59%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	93.58%
Plants	Host-Associated → Plants	4.59%
Aquatic	Environmental → Aquatic	1.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	93.58%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.75%
Sediment	Environmental → Aquatic → Sediment	1.83%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	85.32%
Loam	Environmental → Terrestrial → Soil → Loam	8.26%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.83%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.92%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.92%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	75.23%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	9.17%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.26%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.83%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	51.38%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	23.85%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	8.26%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	7.34%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.83%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	1.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.92%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.92%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031794	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1054483293	3300000956	Soil	MTADFPIQGDTVRVLQGPFAGRLALYGGMRPRDRVLVLLQLLGAQQRVELGRDDIEAV*
Ga0066395_108626003	3300004633	Tropical Forest Soil	PFNGSLALYAGQRPHERVLVLLALFGSQQKVELPKDAVEVVS*
Ga0066388_1020156841	3300005332	Tropical Forest Soil	VPGPFQGQLALYAGMKPRERVEVLLALLGGQQRVTLPKGDIEAV*
Ga0066388_1036325532	3300005332	Tropical Forest Soil	LIELPQRSGLKPGAQVRILQGKFAGHLGLYAGQRAHERVLVLLALLGGQQRVALAKDAVELAR*
Ga0066903_1009142782	3300005764	Tropical Forest Soil	GPFSGQLGLYQGQRPRERVLVLLALLGGHQRVELAQGDIEAAD*
Ga0066903_1017631613	3300005764	Tropical Forest Soil	LYAGQRPHERVLVLLALLGGEQRVTLAKKDIEVVR*
Ga0066903_1023717583	3300005764	Tropical Forest Soil	VLGGPFIGHLGLYAGMKPRERVEVLLAVLGGACRVTLAKS
Ga0066903_1073216302	3300005764	Tropical Forest Soil	LQGPFAGHLGLYAGQRAHERVLVLLALLGGQQRVELAKDAVELAR*
Ga0066903_1075242653	3300005764	Tropical Forest Soil	EEFRMGDHVRVTAGALSGQLGLYAGQRPHERVLVLLALLGGQQRVELPRDAVEVI*
Ga0066903_1078759421	3300005764	Tropical Forest Soil	QGHLGLYAGQRPHERVLVLLALLGGEQRVTLAKKDIEVVP*
Ga0081455_104543752	3300005937	Tabebuia Heterophylla Rhizosphere	PGARVRILHCPLEGRFGLYAGMRAQERVLVLLALLGREQRVELARQDVEVDP*
Ga0081455_105915021	3300005937	Tabebuia Heterophylla Rhizosphere	GRFGLYAGMRAQERVLVLLALLGREQRVELGRQDVEVL*
Ga0126374_118669342	3300009792	Tropical Forest Soil	YAGQRPHERVLVLLALLGGQQRVELARDGMEAVGRP*
Ga0126373_115401181	3300010048	Tropical Forest Soil	AGETVRITQGVFAGHLGLYAGQRPHERVLVLLALLGGQQRVELPQEVIEAVSNTVR*
Ga0126376_113048191	3300010359	Tropical Forest Soil	VRILQGPFAGHLGLYAGQRAHERVLVLLALLGGQQRVELARDGIEAVGRP*
Ga0126383_118103631	3300010398	Tropical Forest Soil	REEFRMGEAVRVTHGPLVGCVGLYAGMRPHERCLVLLALLGGHQRVELARGDVEAAS*
Ga0126383_131850673	3300010398	Tropical Forest Soil	SGQLGLYAGQRPHERVLVLLALLGGQRVELARDAIEAV*
Ga0126369_127488562	3300012971	Tropical Forest Soil	MGEAVRVSVGPLSGCLGLYAGQRPHERVLVLLALLGGQRVELA
Ga0157378_127151501	3300013297	Miscanthus Rhizosphere	VKVTIGPFAGQLGLYAGMKPHQRVEVLLTLLGGQQRVSLSREAIEPG*
Ga0132258_102368255	3300015371	Arabidopsis Rhizosphere	LRRGDRVRILRWPFNGQLAIYAGMRPREGVEVLLALLGGQQRVELARDAIAATGP*
Ga0132256_1032594621	3300015372	Arabidopsis Rhizosphere	WPFNGQLAIYAGMRPREGVEVLLALLGGQQRVELARDAIAATGP*
Ga0182036_104499902	3300016270	Soil	VFLTGEAVRVIQGPFAGHLALFAGQRPHDRVSVLLALLGGQQRVERPRDGIEAVG
Ga0182036_111877151	3300016270	Soil	FAGHLGLYADMRPHERVLVLLALLGGEQRVELSKDAIEAVRS
Ga0182036_116977182	3300016270	Soil	SYPSALGSILQGPFAGQLGLYAGMRAYERVLVLLALGGQQRVEFAKDDVESAR
Ga0182041_114331721	3300016294	Soil	AGPLQGQLGLFAGQRPHERVLVLLTLLGGQQRVELPKDAVEALH
Ga0182033_115102521	3300016319	Soil	FREQIALYAGMKARERVDVLLSLLGGQHRVTWPRGDVEAV
Ga0182037_104656123	3300016404	Soil	GPFQGQLALYAGVKPRERVEVLLALLGAQQRVTLPRGAIGTV
Ga0182039_104938892	3300016422	Soil	VYCGQLGLYAGQRPHERVLVLLALLGGQQRVELAKDAIELVRRD
Ga0182038_118754593	3300016445	Soil	FVGHLGLYAGMKPRERVEILLQLLGAEQRVELPKDAVEVVD
Ga0184605_104799851	3300018027	Groundwater Sediment	TVGPFAGQLGIYAGMKPHQRVEVLLTLLGGQQRVSLSREAIEPG
Ga0184624_100666631	3300018073	Groundwater Sediment	LGLYAGMRPRDRVTALLTLLGAAQRVELPKAAIEPA
Ga0190270_103940602	3300018469	Soil	AQPHGLRTGSRVKITTGPFAGHLGLVAGMRPRDRVTVLLSLLGSAQRVELPKAATEPT
Ga0190271_119207821	3300018481	Soil	TGPFAGHLGLVAGMRPRDRVTVLLSLLGSAQRVELPKAATEPT
Ga0126371_118438022	3300021560	Tropical Forest Soil	QGPFAGQLGLYAGMRAHERVLVLLALLGGQQRVELPKADVEAVSNTGRAE
Ga0126371_138626402	3300021560	Tropical Forest Soil	SWLKPGDQVRILQGTFAGHLGLYAGMRPHERVLVLLALLGGQQRVELPKADVEAVSNTGRAE
Ga0318534_102199314	3300031544	Soil	RVLAGPLQGQLGLYAGQRPHERVLVLLALLGGQQRVELPKDAVEVVS
Ga0318541_102025981	3300031545	Soil	EPELPKRSGLQPGDHVRVLHGPLAGQLGLYAGQRPHERVLVVLALLGGQQRVELATSDIEAL
Ga0318541_104330512	3300031545	Soil	VRILQGPFAGRLGLCAGMRAHERVLVLLALLGGQQRVELPKGDVEAAGAV
Ga0318541_105462952	3300031545	Soil	VRILQGPFAGQLGLYAGMRPHERVLVLLQLLGGQQRVELSKADVEAVSNTGRAE
Ga0318541_107434593	3300031545	Soil	RVTHGPFSGQLGLYQGQRPHERVLVLLALFGSAQKVTLARSDIEVVD
Ga0318541_107765563	3300031545	Soil	FQGLRGLYQGQRPHERVAILLALLGRVDLPKANIEAVRS
Ga0318573_102549472	3300031564	Soil	VRILAGPFEGHLGLYAGMRPHERVLVLLALLGGQQRVELPKDSIEAVRP
Ga0318515_107611051	3300031572	Soil	GPFEGHFGLYAGMRPHERVLVLLALLGGQQRVELPKDSIEAVRP
Ga0310915_101241573	3300031573	Soil	FEGHFGLYAGMRPHERVLVLLALLGGQQRVELPKDSIEAVRP
Ga0318555_103988371	3300031640	Soil	FRVGDRVRVLAGPLQGHLGLYAGQRPHERVLVLLALLGGEQRVTLAKKDIEVVR
Ga0318542_104063351	3300031668	Soil	PRREAFCAGETVRILQGPFEGHLGLYAGMRPHVLVLLALLGGQQRVELPKDSIEAVRS
Ga0318561_104699301	3300031679	Soil	LKAGDQVRILAGPFEGHLGLYAGMRPHERVLVLLALLGGQQRVELPKDSIEAVRP
Ga0318572_105861651	3300031681	Soil	VVQGPFGGQLGLYQGQRPHERVLVLLALFGGQQKVTLAKKDIEVVR
Ga0318560_103675362	3300031682	Soil	GETVRILQGPFEGHLGLYAGMRPHVLVLLALLGGQQRVELPKDSIEAVRS
Ga0318496_105812861	3300031713	Soil	FAGHLGLYAGMRAHERVLVLLALLGGQQRVELPKGDVEAAGAV
Ga0318496_105964172	3300031713	Soil	VRILAGPFEGHFGLYAGMRPHERVLVLLALLGGQQRVELPKDSIEAVRP
Ga0306917_100097981	3300031719	Soil	QVRILAGPFEGHLGLYAGMRPHERVLVLLALLGGQQRVELPKDSIEAVRP
Ga0306917_115499833	3300031719	Soil	QVRITAGAFSGRFGLYQGQRARERVLVLLGLLGRVELAKDAIEAVS
Ga0318500_105788191	3300031724	Soil	RPLIGHLALYAGQRPHERVLVLLALLGGQQQVELAKDSVEVVR
Ga0306918_109554371	3300031744	Soil	AFGGHLALYAEQRPHERVLVLLELFGGQQRVELVDKV
Ga0306918_109605671	3300031744	Soil	VRILQGPFEGHLGLYAGMRPHVLVLLALLGGQQRVELPKDSIEAVRS
Ga0318502_108221783	3300031747	Soil	PRREKFKAGDRVRILQGPFEGHLGLYAGMRPHERVLVLLALLGGEQRVELPKADIEAVRS
Ga0318509_108304171	3300031768	Soil	SGLQPGDHVRVLHGPLAGQLGLYAGQRPHERVLVVLALLGGQQRVELATSDIEAL
Ga0318521_108454661	3300031770	Soil	VKILQGSFAGHLGLYQGMRSHERVLVLLSLLGGPQRVILPKSDIEPVRP
Ga0318521_109690042	3300031770	Soil	LGLCAGMRAHERVLVLLALLGGQQRVELPKGDVEAAGAV
Ga0318548_100192211	3300031793	Soil	MPIHSMRPHERVLVLLALLGGQQRVELPKDSIEAMRP
Ga0318548_101687714	3300031793	Soil	LQGQLGLYADQRPHERVLVLLALLGGQQRVELPKDAVEVVS
Ga0318503_101340832	3300031794	Soil	LYAGMRPHERVLVLLALLGGQQRVELPKDSIEAVRP
Ga0318557_103601001	3300031795	Soil	AVRILRGPFREQIALYAGMKARERVDVLLSLLGGQHRVTLPRGDVEAV
Ga0318557_105739971	3300031795	Soil	GQLGLYAGQRPHERVLVVLALLGGQQRVELAKDAIELVRRD
Ga0318557_105895731	3300031795	Soil	VGQLGPYAGMRPHERVLVLLALLGGQQRVELAKDAVELAR
Ga0318512_102851831	3300031846	Soil	AGDQVRILAGPFEGHFGLYAGMRPHERVLVLLALLGGQQRVELPKDSIEAVRP
Ga0318527_105032232	3300031859	Soil	LHGPFVGQLGPYAGMRPHERVLVLLALLGGQQRVELAKDAVELAR
Ga0306919_100689265	3300031879	Soil	VYCGQLGLYAGQRPHERVLVVLALLGGQQRVELAKDAIELVRRD
Ga0306919_106970041	3300031879	Soil	QGPLAGHLGLYAGMCAHERVLVLLALLGSQQRVDLPKGDIEIARL
Ga0306919_110056251	3300031879	Soil	ERNGLIEPPQRSGLKPGDQVRILQGSFAGQLGLYAGVRAHERMLVLLALLGGQQRVELPKADVEAVSNTGRAE
Ga0306925_112732391	3300031890	Soil	GPFAGRLGLCAGMRAHERVLVLLALLGGQQRVELPKGDVEAAGAV
Ga0318522_101159181	3300031894	Soil	QVRILAGPFEGYLGLYAGMRPHERVLVLLALLGGEQRVELARENIEAVRS
Ga0318520_105368211	3300031897	Soil	RVGDRVKVTAGPFTGQLGLYAGMRGSERVLVLLALLGGQVRTELARDAIEEIRS
Ga0306923_107355561	3300031910	Soil	KVTAGPFTGHLGLYAGMRGRERVLVLLAVLGGQQRVELAKDAVEAVRS
Ga0306923_111835923	3300031910	Soil	GLYVGMRAHERVLVLLALLGGQQRVELPRGDIEAARL
Ga0306923_113274581	3300031910	Soil	PFEGHLGLYAGMRPHERVLVLLALLGGQQRVELPNDSIEAVRP
Ga0306921_119682592	3300031912	Soil	GLQPGDHVRVLHGPLAGQLGLYAGQRPHERVLVLLALLGGQQRVELAKDAIELVRRD
Ga0310912_102392853	3300031941	Soil	VYCGQLGLYAGQRPHERVLVVLALLGGQQRVELATSDIEAL
Ga0310912_107658291	3300031941	Soil	DHFGLYVGQRPHERVLVLLALLGGQQRVELAKADIEAVQI
Ga0310912_114403412	3300031941	Soil	PVKILQGPLQGLCGLYQRQRPHERVLVLLTLLGGAQRVELARAAVEALH
Ga0310913_101327914	3300031945	Soil	LQPGDHVRVLHGPLAGQLGLYAGQRPHERVLVVLALLGGQQRVELATSDIEAL
Ga0310913_107517911	3300031945	Soil	QGPFEGHLGLYAGMRPHERVLVLLALLGGQQRVELPKDSIEAVRS
Ga0310909_105098291	3300031947	Soil	IELPKRPGPKPGDQVRILQDPFAGQLGLYVGMRAHERVLVLLALLGGQQRVELPRGDIEAARL
Ga0318530_103163331	3300031959	Soil	QLGLYQGQRPHERVLVLLALFGGQQKVTLAKKDIEVVR
Ga0306922_114999562	3300032001	Soil	DHFGLYAGQRPHERVLVLLALLGGQQRVELPKDAVEAVAF
Ga0310911_105703551	3300032035	Soil	RREKFKAGDRVRILQGPFEGHLGLYAGMRPHERVLVLLALLGGEQRVELPKADIEAVRS
Ga0318549_100356062	3300032041	Soil	LVELPRREGFKAGEQVRILAGPFEGHLGLYAGMRAHERVLVLLALLGGQQRVELPKADIEAVRS
Ga0318506_102427942	3300032052	Soil	KAGDQVRILAGPFEGHFGLYAGMRPHERVLVLLALLGGQQRVELPKDSIEAVRP
Ga0318533_100099211	3300032059	Soil	FKAGDQVRILAGPFEGHFGLYAGMRPHERVLVLLALLGGQQRVELPKDSIEAVRP
Ga0318533_113958562	3300032059	Soil	GPFSGQLGLYQGQRPRERVLVLLAVLGGQQRVELAKDDIEAV
Ga0318510_100720571	3300032064	Soil	KRPGLKPGDQVRILQGPFAGRLGLCAGMRAHERVLVLLALLGGQQRVELAKDDVEGVSW
Ga0318510_103678752	3300032064	Soil	GHLGLYAGMRPHERVLVLLALLGGQQRVELPKDSIEAVRS
Ga0318510_104250413	3300032064	Soil	AGSFAGHLGLYAGMRAHERVLVLLALLGGQQRVELPKGDVEAAGAV
Ga0306924_108993132	3300032076	Soil	NELPKRSGLQPGDHVRVLHGPLAGQLGLYAGQRPHERVLVVLALLGGQQRVELATSDIEA
Ga0306924_124030432	3300032076	Soil	LPKRSGLQPGDHVRVLHGPLAGQLGLYAGQRPHERVLVLLALLGGQQRVGLAKDAIELVRRD
Ga0306924_124740791	3300032076	Soil	VELPKRETFHVGNQLRILHGPFVGQLGPYAGMRPHERVLVLLALLGGQQRVELAKDAVELAR
Ga0318525_102378351	3300032089	Soil	AGPLQGQLGLYAGQRPHERVLVLLALLGGQQRVELPKDAVEVVS
Ga0318577_100643901	3300032091	Soil	LKAGDQVRILAGPFEGHFGLYAGMRPHERVLVLLALLGGQQRVELPKDSIEAVRP
Ga0318577_102122131	3300032091	Soil	LQGPFAGQLGLYAGMRAYERVLVLLALGGQQRVELAKDDVESAR
Ga0318577_106407401	3300032091	Soil	PFAGQLGLYVGMRAHERVLVLLALLGGQQRVELPRGDIEAARL
Ga0318540_100410233	3300032094	Soil	ELPGRDGFKAGDQVRILAGPFEGHFGLYAGMRPHERVLVLLALLGGQQRVELPKDSIEAVRP
Ga0318540_103568123	3300032094	Soil	VRITAGAFAGHLGLYQGMRARDRILVLLALLGGQSRVELDKDAVEAVP
Ga0318540_105979011	3300032094	Soil	YQGMRSHERVLVLLSLLGGPQRVILPKSDIEPVRP
Ga0306920_1017483072	3300032261	Soil	LKPGDQVRVLAGPLQGQLGLYAGQRPHERVLVLLALLGGQRVELAREAIEAVE
Ga0306920_1038779701	3300032261	Soil	VELPRRDGFKIGDQVRVLAGPLQGHLGLYHGQRPHERVLVLLALLGGQQRVELARGAIEALH
Ga0310914_114665661	3300033289	Soil	LVILPERSTLKPGDQVRVLAGPLQGQLGLYAGQRPHERVLVLLALLGGQRVELAREAIEAVE
Ga0318519_102182742	3300033290	Soil	RVLAGPFEGHLGLYAGMRPHERVLVLLALLGGQQRVELPKDSIEAVRS
Ga0318519_108922441	3300033290	Soil	LYAGQRPHERVLVLLALLGGQQRVELARSAIEAAE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F088064

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences