Metagenome Family F088155

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F088155
Family Type	Metagenome
Number of Sequences	109
Average Sequence Length	48 residues
Representative Sequence	VTLMVPHMVHLQDVVKLHTFVLGHLGALLLACFGFDLRFALVAFDLVSDSI
Number of Associated Samples	17
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	60.00 %
% of genes near scaffold ends (potentially truncated)	9.17 %
% of genes from short scaffolds (< 2000 bps)	3.67 %
Associated GOLD sequencing projects	10
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (87.156 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine (76.147 % of family members)
Environment Ontology (ENVO)	Unclassified (87.156 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Surface (saline) (100.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 66.67% β-sheet: 0.00% Coil/Unstructured: 33.33%
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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF07727	RVT_2	6.42
PF00665	rve	4.59
PF00078	RVT_1	4.59
PF04827	Plant_tran	2.75
PF00098	zf-CCHC	2.75
PF14223	Retrotran_gag_2	1.83
PF00004	AAA	0.92
PF13359	DDE_Tnp_4	0.92
PF02373	JmjC	0.92
PF13976	gag_pre-integrs	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG2801	Transposase InsO and inactivated derivatives	Mobilome: prophages, transposons [X]	4.59
COG2826	Transposase and inactivated derivatives, IS30 family	Mobilome: prophages, transposons [X]	4.59
COG3316	Transposase (or an inactivated derivative), DDE domain	Mobilome: prophages, transposons [X]	4.59
COG4584	Transposase	Mobilome: prophages, transposons [X]	4.59

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	87.16 %
Rhodophyta	phylum	Rhodophyta	9.17 %
All Organisms	root	All Organisms	3.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	87.16 %
Bangiophyceae	class	Rhodophyta → Bangiophyceae	8.26 %
cellular organisms	root	All Organisms → cellular organisms	3.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	87.16 %
Bangiales	order	Rhodophyta → Bangiophyceae → Bangiales	8.26 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	3.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	87.16 %
Bangiaceae	family	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae	8.26 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	3.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	87.16 %
Porphyra	genus	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra	8.26 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	3.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	87.16 %
Porphyra umbilicalis	species	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	8.26 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	3.67 %

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004791\|Ga0068459_105272	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	4441	Open in IMG/M
3300005647\|Ga0079203_1123904	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	793	Open in IMG/M
3300009073\|Ga0114957_1020258	All Organisms → cellular organisms → Eukaryota	3933	Open in IMG/M
3300009073\|Ga0114957_1206899	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	594	Open in IMG/M
3300009415\|Ga0115029_1003994	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	7800	Open in IMG/M
3300009415\|Ga0115029_1012010	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	3821	Open in IMG/M
3300009417\|Ga0114953_1007249	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	7028	Open in IMG/M
3300009421\|Ga0114952_1275763	Not Available	504	Open in IMG/M
3300009439\|Ga0115031_1002486	All Organisms → cellular organisms → Eukaryota	13726	Open in IMG/M
3300009439\|Ga0115031_1047882	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	2129	Open in IMG/M
3300009446\|Ga0114956_1104670	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	1343	Open in IMG/M
3300027262\|Ga0209303_1003246	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	7746	Open in IMG/M
3300027509\|Ga0209187_1015285	All Organisms → cellular organisms → Eukaryota	3861	Open in IMG/M
3300027554\|Ga0209831_1001551	Rhodophyta	20922	Open in IMG/M
3300027554\|Ga0209831_1003348	All Organisms → cellular organisms → Eukaryota	13309	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	81.65%
Environmental	Environmental	18.35%

Habitat	Taxonomy	Distribution
Algae	Host-Associated → Algae	81.65%
Aquatic	Environmental → Aquatic	18.35%

Habitat	Taxonomy	Distribution
Red Algae	Host-Associated → Algae → Red Algae	81.65%
Marine	Environmental → Aquatic → Marine	18.35%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Algae → Red Algae → Unclassified	81.65%
Unclassified	Environmental → Aquatic → Marine → Unclassified	18.35%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Algae → Red Algae → Unclassified → Unclassified	81.65%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	18.35%

Habitat	Taxonomy	Distribution
Marine	Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine	76.15%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	18.35%
Porphyra Umbilicalis	Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Porphyra Umbilicalis	5.50%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004791	Porphyra umbilicalis microbial communities from the coast of Maine, USA, in Atlantic Ocean	Host-Associated	Open in IMG/M
3300005647	Marine algae microbial communities from Bantry Bay - Bantry Bay, Ireland	Environmental	Open in IMG/M
3300005651	Marine algae microbial communities from Blueberry Hill - Blueberry Hill, Maine	Environmental	Open in IMG/M
3300005654	Porphyra Blade Metagenome Co-Assembly	Environmental	Open in IMG/M
3300009073	Marine algal microbial communities from Bantry Bay, Ireland - BantryBay_4 metaG	Host-Associated	Open in IMG/M
3300009410	Marine algal microbial communities from Porto, Portugal - Porto_5 metaG	Host-Associated	Open in IMG/M
3300009415	Marine algal microbial communities from Sidmouth, United Kingdom - Sidmouth_Asex1 metaG	Host-Associated	Open in IMG/M
3300009417	Marine algal microbial communities from Sidmouth, United Kingdom - Sidmouth_Male2 metaG	Host-Associated	Open in IMG/M
3300009421	Marine algal microbial communities from Sidmouth, United Kingdom - Sidmouth_Asex2 metaG	Host-Associated	Open in IMG/M
3300009439	Marine algal microbial communities from Maine, USA - Maine_Asex4_metaG	Host-Associated	Open in IMG/M
3300009446	Marine algal microbial communities from Maine, USA - Maine_Asex2 metaG	Host-Associated	Open in IMG/M
3300027028	Marine algal microbial communities from Porto, Portugal - Porto_5 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027262	Marine algal microbial communities from Sidmouth, United Kingdom - Sidmouth_Asex1 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027498	Marine algal microbial communities from Sidmouth, United Kingdom - Sidmouth_Asex2 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027509	Marine algal microbial communities from Bantry Bay, Ireland - BantryBay_4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027554	Marine algal microbial communities from Maine, USA - Maine_Asex4_metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027623	Marine algal microbial communities from Maine, USA - Maine_Asex2 metaG (SPAdes)	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0068459_10463210	3300004791	Porphyra Umbilicalis	VTVMVPHMVHLQDVVKLHTFVLGDLGALLLACFGFALRFVLVAFDLVSDSI*
Ga0068459_1050559	3300004791	Porphyra Umbilicalis	MVPQMVHLQDVVKLHSFVLGHLGALLSACFGFDLRFALVAFDLVSDSF
Ga0068459_1052727	3300004791	Porphyra Umbilicalis	MVPHMVHLQDVVKLHTFLLGHLGALLLACFGFDLRFALVAFDLVSDSIWCEGVGV
Ga0068459_1058782	3300004791	Porphyra Umbilicalis	MVPQMVHLQDVVKLHTFVLGLLGALLLACFGFDVRFALLAFDFVSNSI*
Ga0068459_1080524	3300004791	Porphyra Umbilicalis	MVPQMFHLQDVVKLHTFLLGHLGALLLACFGFDLRFAQVAFDLVSDSV*
Ga0068459_1103971	3300004791	Porphyra Umbilicalis	MVPQMVHLQDVVKLHTFVLGHLGALLLACFGFDLRFALVDFDLVSDSIWCEGVGVGAGA
Ga0079203_10176684	3300005647	Marine	MVHLQDVVKLHTFVLGHLGALLLVCFGFDLRFAQVAFDLVSDST*
Ga0079203_10190604	3300005647	Marine	MVPHMVHLQDVVKLQTFVLGDLGALLLACFGFDLRFALVDFDLVSDSIWCEGVGVGVGAR
Ga0079203_10303891	3300005647	Marine	MVPQMVHLQDVVKLHTFVLGHLGALLLACFGFDLRFALVDFDLVSDSIWCEGVGVGVGAR
Ga0079203_10841401	3300005647	Marine	LMVLHMVHLQDVVKLHTFVLGDLGALLLANFGFDLRFALVAFHLVSDSI*
Ga0079203_11239043	3300005647	Marine	LQDVVKLHTFVLGHLGALLLACFGFDLRFALVAFDLVSDSIWCE
Ga0079203_11416321	3300005647	Marine	MVHSQDVVKLHTFVLGHLGALLLVCFGFDLRFALVAFDLVSDS
Ga0079203_11527371	3300005647	Marine	MVHLQDVVKLHTFVLGHLGALLLACFGFDLRFALVAFDLVS
Ga0079203_11535941	3300005647	Marine	MAHLQDVVKLHTFVLGDLGALLLACFGFDLRFALVAFDLVS
Ga0079203_11952431	3300005647	Marine	MVPHMVHLQDVVKLHTFVLGHLGALLLACFGFDLRFALVA
Ga0079202_100873721	3300005651	Marine	GRWSVTLMVPHMVHLQDVVKLHTFVLGHLGALLLACFGFDLRFVLVAFDLVSDSI*
Ga0079202_101136781	3300005651	Marine	MMVGNPYGPQMVHLQDVVKLHTFVLGHLETLLLAYFACDLRFALVAVDLVSDSI*
Ga0079202_101311192	3300005651	Marine	VTLMVPHMVHLQDVIKLHTFVLGDSGALPMAYFGFDLRFALVAFDLVSDSIWCEGVGV
Ga0079202_101550202	3300005651	Marine	VTLMVPHMVHLRDVVKLHTFVLGHLGALLLACFGFDLRFALVAFDLVSDSI
Ga0079202_102081301	3300005651	Marine	MVHLQDVVKLHTFVLGHLGALLLACFGFDLRFALVAFDLV
Ga0079204_100578071	3300005654	Marine	VTLKVPQMVHLQDVVKLHTFVLGHLGALLLVCFGFDLRFAQVAFDLVSDST*
Ga0079204_100593145	3300005654	Marine	MVPQMVHLQDVVKLHTFVLGHLGALLLACFGFDLCFALVAFDLVRDST*
Ga0079204_102091351	3300005654	Marine	VTPMVPQMVHLQDVVKLHTFVLGHLGALLLACFGFDLRFALVAFDLVSDSI
Ga0079204_102206301	3300005654	Marine	VTLMVPHMVHLQDVIKLHTFVLGDSGALPMAYFGFDLRFALVAFDLVSDSIWCEGVGVDV
Ga0079204_102768821	3300005654	Marine	MTLMVPHMVHLQDVVKLHTFVLGHLGALLLACFGFDLRFALVAFDLV
Ga0079204_102798803	3300005654	Marine	MVHLQDVVKLHTFVLGHLGALLLACFGFDLRFALVAFDLVSDSIW
Ga0114957_10018211	3300009073	Marine	SVTRMVPHIVHLQDVVKLHTFVLGHLGALILACFGFNLRFAPVAFDFFE*
Ga0114957_100877213	3300009073	Marine	MVPNMVHLQDVVKMHTFVLGHLGALLLACFGFDLRFAQVAFDLVSDSIWCEGVGVGVG
Ga0114957_100900711	3300009073	Marine	MVGALKVQQMGHLQDVVKLHTFVLGHLGALLLACFGFDLRFALVAFDLVSDST*
Ga0114957_10127079	3300009073	Marine	MPQMVHLQDVVKLHTFVLGHLGAFLLACFAFDLRFALVAFDLVSDSI*
Ga0114957_101282811	3300009073	Marine	VTLMVPHMVHFQDMVKLHTFVLGHLGAILLACFGFDLRIALVAFDLVSDSI*
Ga0114957_10132131	3300009073	Marine	VTPMVPQMVRLQDVVKLHTFVLGHLGALLLACFGFDLRFALVAFDLVSDS
Ga0114957_10171651	3300009073	Marine	MVGDLMVPHMVHLQDVVKLHTFVLGHLGALLLACFGFDLRFALVAFDLVSDSI
Ga0114957_10202586	3300009073	Marine	VTRKVPQMVHLQDVVKLHTFVLGHLRALLLVCFGFDLRFAQVAFDLVSNSI*
Ga0114957_10295311	3300009073	Marine	VTLMVPHMVHLQDVVKLHTFVLGHLGALLLACFGFDLRF
Ga0114957_10305771	3300009073	Marine	VTLTVPHMVHLQDVVKLHTFVLGHLGALLLACFGFDLRFA
Ga0114957_10590643	3300009073	Marine	MTLMVPNMVHLQDVVKLHTFVLGDLGALLLACFGFDLRFALV
Ga0114957_10905981	3300009073	Marine	MVLHMVHLQDVVKLHTFVLGDLGALLLANFGFDLRFALVAFDLVSDSI*
Ga0114957_11502391	3300009073	Marine	VTLMVPHMVYLQDVVKLHTFVLGDLGALLLACFGFDLRFALVAFDL
Ga0114957_11896972	3300009073	Marine	VTLMVPHMVHLEDVVKLHTFVLGHLGALLLACFGFDLRFALVAFDLVS
Ga0114957_12068992	3300009073	Marine	MTLMVPHMVHLQGVVKLHTFVLGDLGALLLACFGFDLRFALVAFDLVSD
Ga0114957_12090981	3300009073	Marine	MVHSQDVVKLHTFVLGHLGALLLACFGFDLRFALVAFD
Ga0114957_12559261	3300009073	Marine	MVLHMVHLQDVVKLHTFVLGDLGALLLACFGFDLRFALVAFDL
Ga0114955_10145881	3300009410	Marine	VTLMVPHMVHLQDVVKLHTFVLGHLGALLLSCFGFDRRFALVAFDLVSDSI
Ga0115029_10039941	3300009415	Marine	VTHMVPHMVHLQDVVKLHTFVLGHLGALLLACFGFDLRFALVA
Ga0115029_10120106	3300009415	Marine	VTLMVPHMVHLQDVVKSHTFVLGDLGALLLACFGFDLRFALVAFDLV
Ga0115029_10135984	3300009415	Marine	MVHLQDVVKLHTFVLGHLGTLLLVCFGFDLRFAQMAFDLVSDSI*
Ga0115029_10255732	3300009415	Marine	MVPQMVHLQDVVKLHTFVLGHLGAFLLAYFGFDLRFALVAFDLVSDSI*
Ga0115029_10302402	3300009415	Marine	MVPQLFHLQDVVKLHTFLLGHLGALLLACFGFDLRFAQVAFDLVSDSV*
Ga0115029_10332951	3300009415	Marine	MTLMVPHMVHLQDVVKLHTFVLGHLGALLLACFGFDLRFALVAFDLVSDSIWCEGV
Ga0115029_10336501	3300009415	Marine	VTPMVPQMVPLRDVVKLHTFVLGHLGALLLACFGFDLRFALVAFDLVSDSIW
Ga0115029_10531191	3300009415	Marine	VTLMVLHMVHLQDVVKLHTFVLGDLGALLLANFGFDLRFALVAFHLVSDSI*
Ga0115029_10787863	3300009415	Marine	MVPHMVHLQDVVKLHTFVLGHLGALLLACFGFDLRFALV
Ga0115029_11038011	3300009415	Marine	MVPQMVHLQDVVKLHTFVLGHLGALLLACFGFDLRFALVDFDLVSDSIW
Ga0115029_11597381	3300009415	Marine	VTLMVPHMIHLQDVVKLHTFVLGHLGALLLACFGFDLRFALVDFDLVSD
Ga0114953_10072499	3300009417	Marine	SVTLMVPHMVHLQDVVKLHTFVLGHLGALLLSCFGFDLRFALVAFDVVSDSI*
Ga0114952_10120401	3300009421	Marine	VTLMVPHMVHLQYVVKLHTFVLGHLGALLLACFGFDLRFALVAFDL
Ga0114952_10851641	3300009421	Marine	MVPLRDVVKLHTFVLGHLGALLLACFGFDLRFALVAFDL
Ga0114952_11074332	3300009421	Marine	VTLMVPHMVHLQDVVKLHTFVLGHLGALLLACFGFDLRFALVAFDLVSDSIWCE
Ga0114952_11253301	3300009421	Marine	MVHLQDVVKLQTFVLGDLGALLLACFGFDLRFALVDFDLVSDSIWCEGVG
Ga0114952_11442431	3300009421	Marine	VVKLHTFVLGHLGALLLACFGFDLRFALVAFDLVSDS
Ga0114952_11871441	3300009421	Marine	VTLMVPHMVHSQDVVKLHTFVLGDLGALLLACFGFDLRF
Ga0114952_11898181	3300009421	Marine	MTLMVPHMVHLQDVVKLHTFVLGHIGALLLACFGFDLRFAL
Ga0114952_12273072	3300009421	Marine	MVHLQDVVKLHTFLLGHLGALLLACFGFDLRFALVAFDLVS
Ga0114952_12430691	3300009421	Marine	VTPMVPQMVHLQDVVKLHTFVLGHLGALLLACFGFDLCFALVAFDLVRDST*
Ga0114952_12680402	3300009421	Marine	VTLMVPHMVHMQDVVKLHTFVLGHLGALLLACFGFDLRFALVAFDLV
Ga0114952_12757631	3300009421	Marine	MVHLQNVVKLHTFVLGDLGALLLACFGFDLRFALVAFDLGSDSI
Ga0115031_10018831	3300009439	Marine	VTLMVPHIVHLQDVVKLHTFVLGDLGALLLACFGFDLRFA
Ga0115031_100248613	3300009439	Marine	MVPQMVHLQDVVKLHTFVLGHLETLLLAYFACDLRFALVAVGLVSDSI*
Ga0115031_10082732	3300009439	Marine	VTLMVPHIVHLQDVVKVHTFVLGHLGALLLACFGFDLRFALVAFDLVSA*
Ga0115031_10478821	3300009439	Marine	VTLMVPHMVHLQNVVKLHTFVLGHLGALLLACFGFDLRFALVAFDL
Ga0115031_10870801	3300009439	Marine	VTLMVPHMVHLQDVVKLHTFVLGHLGALLLACFGFDLRFALVTFDLVS
Ga0115031_12116501	3300009439	Marine	MVPQMVHLQDVVKLHTFVLGHLGALLLACFGFDLRFALVAFDLVSDSIW
Ga0115031_12660021	3300009439	Marine	MEPHMVHLQDVVKLHTFVLGHLGALLLACFGFDLRFALVAFD
Ga0114956_11046701	3300009446	Marine	MVPHMVHLQNVVKLHTFVLGDLGALLLACFGFDLRFALVAFDL
Ga0114956_11483741	3300009446	Marine	PMVPQMVHLQDVVKLHTFVLGHLETLLLAYFACDLRFALVAVDLVSDSI*
Ga0114956_13495341	3300009446	Marine	LMVPHMVHLQDVVKLHTFVLGDLGALLLACFGFHRCFASVAFDLVSDSI*
Ga0114956_14073611	3300009446	Marine	MVPHMEHLQDVVKLHTFVLGHLGALLLACFGFDLRFALVAFDLVSDSIC
Ga0114956_14190741	3300009446	Marine	MVPHLVHLQDVVKLHTFVLGHLGALLLACFGFDLRFALVAFDLV
Ga0209295_10434761	3300027028	Marine	VTLMVPHMVHLQDVVKLHTFVLGHLGALLLSCFGFDRRFALVAFDLVS
Ga0209303_100324610	3300027262	Marine	VTHMVPHMVHLQDVVKLHTFVLGHLGALLLACFGFDLRFALVAFVLVSDSI
Ga0209303_10037496	3300027262	Marine	MVPQMVHLQDVVKLHTFVLGHLGAFLLAYFGFDLRFALVAFDLVSDSI
Ga0209303_10092614	3300027262	Marine	VTLMVPHMVHSQDVVKLHTFVLGDLGALLLACFGFDLRFALVA
Ga0209303_10093293	3300027262	Marine	MVHLQDVVKLHTFVLGHLGTLLLVCFGFDLRFAQMAFDLVSDSI
Ga0209303_10239231	3300027262	Marine	MTLMVPHMVHLQDVVKLHTFVLGHLGALLLACFGFDLRFALVAFDLVSDSIWCE
Ga0209303_10401571	3300027262	Marine	VTLMVPHMVHLQDVVKLHTFVLGHLGALLLACFGFDLRIALV
Ga0209303_10570682	3300027262	Marine	VTLMVPHMVHLQDVVKLHTFVLRHLGALLLACFGFDLRFALVAFDLVSDS
Ga0209185_10534901	3300027498	Marine	VTLMVPHMVHLQDVVKLHTFVLGHLGALLLACFGFDLRIALVAF
Ga0209185_10994311	3300027498	Marine	MVPQMVHLQDVVKLHTFVLGHLGALLLACFGFDLRFALVAFDLVSDSFQCEGV
Ga0209187_10038363	3300027509	Marine	MVGALKVQQMGHLQDVVKLHTFVLGHLGALLLACFGFDLRFALVAFDLVSDST
Ga0209187_100523011	3300027509	Marine	VTFMVPHMVHLQDVVKLHTFVLGHLGALLLACFGFDLRFALVAFD
Ga0209187_10057461	3300027509	Marine	VTLMVPHMVPLQDVVKLHTFVLGHLGALLLACFGFDLRFALV
Ga0209187_100879013	3300027509	Marine	VTLMVPHMVHFQDMVKLHTFVLGHLGAILLACFGFDLRIALVAFDLVSDSI
Ga0209187_10152853	3300027509	Marine	VTRKVPQMVHLQDVVKLHTFVLGHLRALLLVCFGFDLRFAQVAFDLVSNSI
Ga0209187_10154382	3300027509	Marine	VTLMVPHMVHLQDVVKLHTFVLGHLGALLLAYFGFDLRFARVAFDLVSDSI
Ga0209187_10359221	3300027509	Marine	MVPHMVHLQDVVKLHTFVLGHLGALLLACFGFDLRFALVAF
Ga0209187_10656571	3300027509	Marine	LHMVHLQDVVKLHTFVLGDLGALLLANFGFDLRFALVAFDLVSDSI
Ga0209831_100155130	3300027554	Marine	VTVMVPHMVHLQDVVKLHTFVLGDLGALLLACFGFALRFVLVAFDLVSDSI
Ga0209831_100334814	3300027554	Marine	MVPQMVHLQDVVKLHTFVLGHLETLLLAYFACDLRFALVAVGLVSDSI
Ga0209831_10052541	3300027554	Marine	VTLMVPHMVHLQDVVKLHTFVLGHLGALLLACFGFDLRFALVAFDLVSDSI
Ga0209831_10078692	3300027554	Marine	VTLMVPHIVHLQDVVKVHTFVLGHLGALLLACFGFDLRFALVAFDLVSA
Ga0209831_10080536	3300027554	Marine	VTLKVPQMVHLQDVVKLHTFVLGHLGALLLVCFGFDLRFAQVAFDLVSDSI
Ga0209831_10088662	3300027554	Marine	MVPQMVHLQDVVKLHTFVLGHLGALLLAYFGFDLRFALVAFDLVSDSI
Ga0209831_10142425	3300027554	Marine	VTLMVPHMVHLQNVVKLHTFVLGHLGALLLACFGFDLRFALVAFDLVSDSIWCE
Ga0209828_10559113	3300027623	Marine	VILMVPHMVHLQDVVKVHTFVLGHIGALLLACFGFDLRFAFVVF
Ga0209828_10679042	3300027623	Marine	MVPQMFHLQDVVKLHTFLLGHLGALLLACFGFDLRFAQVAFDLVSDSV
Ga0209828_10823012	3300027623	Marine	MVPQMVHLQDVVKLHSFVLGHLGALLLACFGFDLRFALVAFDLVSDSFQCEGVGVA
Ga0209828_11566132	3300027623	Marine	VTFMVPHMAHLEDVVKLHTFVLGHLGALLLACFGFDLRFALVAF
Ga0209828_11976312	3300027623	Marine	MVPQMVHLQDVVKLHTFVLGHLGALLLACFGFDLRFALVAFDLVSDST

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F088155

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences