Metagenome / Metatranscriptome Family F088290

Basic Information
Family ID	F088290
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	49 residues
Representative Sequence	LTHPDVLRHLLCLHLHLHPLDQNLLLARDAIINPPVVGVKRRRDGGG
Number of Associated Samples	13
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	11.93 %
% of genes near scaffold ends (potentially truncated)	16.51 %
% of genes from short scaffolds (< 2000 bps)	86.24 %
Associated GOLD sequencing projects	13
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.31

Most Common Taxonomy
Group	Unclassified (96.330 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater (84.404 % of family members)
Environment Ontology (ENVO)	Unclassified (84.404 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (84.404 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 38.67% β-sheet: 0.00% Coil/Unstructured: 61.33%
Feature Viewer

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Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF00504	Chloroa_b-bind	0.92
PF00078	RVT_1	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.33 %
All Organisms	root	All Organisms	3.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.33 %
cellular organisms	root	All Organisms → cellular organisms	3.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.33 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	3.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.33 %
Sar	clade	All Organisms → cellular organisms → Eukaryota → Sar	3.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.33 %
Stramenopiles	clade	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles	3.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.33 %
Ochrophyta	clade	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta	3.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.33 %
Bacillariophyta	phylum	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	3.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.33 %
Coscinodiscophyceae	class	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae	3.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.33 %
Thalassiosirophycidae	subclass	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae	3.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.33 %
Thalassiosirales	order	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales	3.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.33 %
Thalassiosiraceae	family	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae	3.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.33 %
Thalassiosira	genus	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira	3.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.33 %
Thalassiosira oceanica	species	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira oceanica	2.75 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300007559\|Ga0102828_1077296	Not Available	795	Open in IMG/M
3300007861\|Ga0105736_1104288	Not Available	618	Open in IMG/M
3300008263\|Ga0114349_1029473	Not Available	2744	Open in IMG/M
3300008263\|Ga0114349_1088252	Not Available	1390	Open in IMG/M
3300008263\|Ga0114349_1096474	Not Available	1301	Open in IMG/M
3300008263\|Ga0114349_1100532	Not Available	1263	Open in IMG/M
3300008263\|Ga0114349_1153342	Not Available	910	Open in IMG/M
3300008263\|Ga0114349_1274466	Not Available	521	Open in IMG/M
3300008265\|Ga0114361_1004916	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira oceanica	5131	Open in IMG/M
3300008265\|Ga0114361_1025970	Not Available	2041	Open in IMG/M
3300008265\|Ga0114361_1062302	Not Available	1167	Open in IMG/M
3300008265\|Ga0114361_1088382	Not Available	961	Open in IMG/M
3300008265\|Ga0114361_1121805	Not Available	811	Open in IMG/M
3300008265\|Ga0114361_1126948	Not Available	793	Open in IMG/M
3300008265\|Ga0114361_1131848	Not Available	778	Open in IMG/M
3300008265\|Ga0114361_1189076	Not Available	642	Open in IMG/M
3300021336\|Ga0210307_1385719	Not Available	554	Open in IMG/M
3300033984\|Ga0334989_0001091	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira	13014	Open in IMG/M
3300033984\|Ga0334989_0011679	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira oceanica	4540	Open in IMG/M
3300033984\|Ga0334989_0012511	Not Available	4398	Open in IMG/M
3300033984\|Ga0334989_0014215	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira oceanica	4154	Open in IMG/M
3300033984\|Ga0334989_0016611	Not Available	3861	Open in IMG/M
3300033984\|Ga0334989_0019406	Not Available	3594	Open in IMG/M
3300033984\|Ga0334989_0023416	Not Available	3291	Open in IMG/M
3300033984\|Ga0334989_0041984	Not Available	2496	Open in IMG/M
3300033984\|Ga0334989_0052128	Not Available	2246	Open in IMG/M
3300033984\|Ga0334989_0066610	Not Available	1988	Open in IMG/M
3300033984\|Ga0334989_0067391	Not Available	1976	Open in IMG/M
3300033984\|Ga0334989_0073900	Not Available	1883	Open in IMG/M
3300033984\|Ga0334989_0074380	Not Available	1877	Open in IMG/M
3300033984\|Ga0334989_0076733	Not Available	1846	Open in IMG/M
3300033984\|Ga0334989_0088896	Not Available	1710	Open in IMG/M
3300033984\|Ga0334989_0093794	Not Available	1663	Open in IMG/M
3300033984\|Ga0334989_0104134	Not Available	1575	Open in IMG/M
3300033984\|Ga0334989_0108808	Not Available	1539	Open in IMG/M
3300033984\|Ga0334989_0113896	Not Available	1502	Open in IMG/M
3300033984\|Ga0334989_0113913	Not Available	1502	Open in IMG/M
3300033984\|Ga0334989_0117868	Not Available	1475	Open in IMG/M
3300033984\|Ga0334989_0124193	Not Available	1434	Open in IMG/M
3300033984\|Ga0334989_0129863	Not Available	1400	Open in IMG/M
3300033984\|Ga0334989_0133194	Not Available	1381	Open in IMG/M
3300033984\|Ga0334989_0146222	Not Available	1312	Open in IMG/M
3300033984\|Ga0334989_0149897	Not Available	1294	Open in IMG/M
3300033984\|Ga0334989_0151562	Not Available	1286	Open in IMG/M
3300033984\|Ga0334989_0163391	Not Available	1233	Open in IMG/M
3300033984\|Ga0334989_0166282	Not Available	1221	Open in IMG/M
3300033984\|Ga0334989_0167244	Not Available	1217	Open in IMG/M
3300033984\|Ga0334989_0191212	Not Available	1127	Open in IMG/M
3300033984\|Ga0334989_0193648	Not Available	1119	Open in IMG/M
3300033984\|Ga0334989_0199352	Not Available	1100	Open in IMG/M
3300033984\|Ga0334989_0201263	Not Available	1094	Open in IMG/M
3300033984\|Ga0334989_0229809	Not Available	1010	Open in IMG/M
3300033984\|Ga0334989_0241426	Not Available	981	Open in IMG/M
3300033984\|Ga0334989_0245017	Not Available	972	Open in IMG/M
3300033984\|Ga0334989_0263197	Not Available	930	Open in IMG/M
3300033984\|Ga0334989_0291280	Not Available	871	Open in IMG/M
3300033984\|Ga0334989_0298736	Not Available	857	Open in IMG/M
3300033984\|Ga0334989_0302096	Not Available	851	Open in IMG/M
3300033984\|Ga0334989_0313506	Not Available	831	Open in IMG/M
3300033984\|Ga0334989_0331606	Not Available	801	Open in IMG/M
3300033984\|Ga0334989_0336107	Not Available	794	Open in IMG/M
3300033984\|Ga0334989_0338029	Not Available	791	Open in IMG/M
3300033984\|Ga0334989_0343900	Not Available	782	Open in IMG/M
3300033984\|Ga0334989_0349242	Not Available	774	Open in IMG/M
3300033984\|Ga0334989_0362766	Not Available	754	Open in IMG/M
3300033984\|Ga0334989_0370785	Not Available	743	Open in IMG/M
3300033984\|Ga0334989_0376792	Not Available	735	Open in IMG/M
3300033984\|Ga0334989_0428718	Not Available	673	Open in IMG/M
3300033984\|Ga0334989_0429636	Not Available	672	Open in IMG/M
3300033984\|Ga0334989_0438174	Not Available	663	Open in IMG/M
3300033984\|Ga0334989_0459197	Not Available	642	Open in IMG/M
3300033984\|Ga0334989_0468185	Not Available	634	Open in IMG/M
3300033984\|Ga0334989_0478896	Not Available	623	Open in IMG/M
3300033984\|Ga0334989_0507969	Not Available	597	Open in IMG/M
3300033984\|Ga0334989_0545930	Not Available	566	Open in IMG/M
3300033984\|Ga0334989_0583682	Not Available	539	Open in IMG/M
3300033984\|Ga0334989_0604993	Not Available	525	Open in IMG/M
3300033984\|Ga0334989_0608182	Not Available	523	Open in IMG/M
3300034022\|Ga0335005_0139137	Not Available	1551	Open in IMG/M
3300034022\|Ga0335005_0402924	Not Available	784	Open in IMG/M
3300034022\|Ga0335005_0620931	Not Available	582	Open in IMG/M
3300034022\|Ga0335005_0717263	Not Available	526	Open in IMG/M
3300034064\|Ga0335001_0234502	Not Available	1016	Open in IMG/M
3300034064\|Ga0335001_0707946	Not Available	524	Open in IMG/M
3300034068\|Ga0334990_0265979	Not Available	934	Open in IMG/M
3300034068\|Ga0334990_0457324	Not Available	683	Open in IMG/M
3300034068\|Ga0334990_0532298	Not Available	623	Open in IMG/M
3300034068\|Ga0334990_0628218	Not Available	562	Open in IMG/M
3300034068\|Ga0334990_0684952	Not Available	532	Open in IMG/M
3300034068\|Ga0334990_0738437	Not Available	507	Open in IMG/M
3300034107\|Ga0335037_0712418	Not Available	523	Open in IMG/M
3300034121\|Ga0335058_0209761	Not Available	1137	Open in IMG/M
3300034167\|Ga0335017_0037199	Not Available	2864	Open in IMG/M
3300034167\|Ga0335017_0098035	Not Available	1725	Open in IMG/M
3300034167\|Ga0335017_0117286	Not Available	1562	Open in IMG/M
3300034167\|Ga0335017_0136322	Not Available	1436	Open in IMG/M
3300034167\|Ga0335017_0165701	Not Available	1282	Open in IMG/M
3300034167\|Ga0335017_0232555	Not Available	1047	Open in IMG/M
3300034167\|Ga0335017_0247148	Not Available	1009	Open in IMG/M
3300034167\|Ga0335017_0302175	Not Available	891	Open in IMG/M
3300034167\|Ga0335017_0336183	Not Available	832	Open in IMG/M
3300034167\|Ga0335017_0336920	Not Available	831	Open in IMG/M
3300034167\|Ga0335017_0590407	Not Available	576	Open in IMG/M
3300034168\|Ga0335061_0048955	Not Available	2257	Open in IMG/M
3300034168\|Ga0335061_0059574	Not Available	2036	Open in IMG/M
3300034168\|Ga0335061_0115907	Not Available	1427	Open in IMG/M
3300034168\|Ga0335061_0163382	Not Available	1183	Open in IMG/M
3300034168\|Ga0335061_0173544	Not Available	1144	Open in IMG/M
3300034168\|Ga0335061_0359560	Not Available	755	Open in IMG/M

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	97.25%
Marine	Environmental → Aquatic → Marine	2.75%

Habitat	Taxonomy	Distribution
Lake	Environmental → Aquatic → Freshwater → Lake	97.25%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	1.83%
Coastal	Environmental → Aquatic → Marine → Coastal	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	97.25%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	1.83%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	84.40%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	12.84%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	1.83%
Estuary Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water	0.92%

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300007559	Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.541	Environmental	Open in IMG/M
3300007861	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1372B_3um	Environmental	Open in IMG/M
3300008263	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-53-LTR	Environmental	Open in IMG/M
3300008265	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0126-100-LTR	Environmental	Open in IMG/M
3300021336	Metatranscriptome of estuarine water microbial communities from the Columbia River estuary, Oregon, United States ? R1073 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300033984	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Mar2001-rr0030	Environmental	Open in IMG/M
3300034022	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Apr2018-rr0058	Environmental	Open in IMG/M
3300034064	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME14Nov2013-rr0054	Environmental	Open in IMG/M
3300034068	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Apr2016-rr0031	Environmental	Open in IMG/M
3300034107	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Apr2017-rr0133	Environmental	Open in IMG/M
3300034121	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19May2015-rr0174	Environmental	Open in IMG/M
3300034167	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Apr2015-rr0082	Environmental	Open in IMG/M
3300034168	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME06Apr2016-rr0183	Environmental	Open in IMG/M

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0102828_10772962	3300007559	Estuarine	LQTTPTDKSEPDVLLHLLCQHIHLNPLDHNLLVVRDAIINLPVVEVKRRRDGGG*
Ga0105736_11042881	3300007861	Estuary Water	LTDPDVLRHLLCLHLHLHPLNQNLLLACDAIINLPVVWVKRRRDGGG*
Ga0114349_10294731	3300008263	Freshwater, Plankton	LTHPGVLRHLLCLHLHLHPLDQNLLLARDTIINPPVVGVKRRRDGGG*
Ga0114349_10882521	3300008263	Freshwater, Plankton	LTHPDVLRYLLCIHLHLHPLNQNLFLACDAIINLPVVWVKRRRDGGG*
Ga0114349_10964741	3300008263	Freshwater, Plankton	THPNVLCHLLCLQHHLRPLDQNLLIARDAIIKPPVVGVKRRRDGGG*
Ga0114349_11005321	3300008263	Freshwater, Plankton	LFFTHTDVLHHLLCLHLHLHPLDQNLLLARDAIINLPVVEVERRRDGGG*
Ga0114349_11533421	3300008263	Freshwater, Plankton	VGPVPQIFLTHPDVLRHLLCLHLHLHPLDQNLFLARDAIINPPVVGVKRRRYGGG*
Ga0114349_12744662	3300008263	Freshwater, Plankton	LTHPDVLRHLLCLHLHLHPLDQNLLLACNAIINPPVVGVKRRKDRGG*
Ga0114361_10049164	3300008265	Freshwater, Plankton	MFFFTHTDVLCHLLCLHLLLHPLDQNLLLARNAIINVPVVGVERRRDGGG*
Ga0114361_10259704	3300008265	Freshwater, Plankton	LTHPDVLRYLLCIHLHLHPLNQNLLLARDAIINLSVVWVKRRRDGGG*
Ga0114361_10623023	3300008265	Freshwater, Plankton	VRFLIFFLTHTNVLGHLFCLHLYVHPLDQNLLLARDAIINLPVVGVERRRDGGG*
Ga0114361_10883821	3300008265	Freshwater, Plankton	ISSASAWARFLIIFLTHPDVLRHLLCLHLHLHPLDQNLLLARDAIINPPDVGVKRRRDGGG*
Ga0114361_11218051	3300008265	Freshwater, Plankton	MIFLTHPDVLRHLLCLHLHLHLHPLDQNPLLARDAIINSPVVGVKRRRDGGG*
Ga0114361_11269482	3300008265	Freshwater, Plankton	MGPVPHNFLTHPGVLRHLLCLHLHLHPLDQNLLLARDTIINPPVVGVKRRRDGGG*
Ga0114361_11318481	3300008265	Freshwater, Plankton	MNKMSVIGQFFLFFTHTDVLCHLLCLHLHLYPLNQNLLLARDAIINLPVVGVERRRDGGG
Ga0114361_11890761	3300008265	Freshwater, Plankton	MGPVPHNFLTHPNVLRHLLCLQHHLRPLDQNLLIARDAIIKPPVVGVKRRRDGGG*
Ga0210307_13857191	3300021336	Estuarine	NVLLHLLCQHIHLPPLNQNLLLTRDAIINLPVVGVKMRWDGGG
Ga0334989_0001091_126_275	3300033984	Freshwater	LFLTHPNVLHHLLCLHLHLHPLNQNLLLACDAIINPPVVGGKRRRDGGG
Ga0334989_0011679_490_639	3300033984	Freshwater	MFLTHPEVLCHLLCLHLQLHPLDQNLLLAHDAIINPPVVGIKRKRDGGG
Ga0334989_0012511_559_726	3300033984	Freshwater	VGSVPHNCFTHPDVLRHLFCLHLHLHPLNQNLLLARDAIINPPVVGVKRRRDGGG
Ga0334989_0014215_3_125	3300033984	Freshwater	HHFLCLHLHLHPLDQNLLLTRDAINNPPVMGVKRRRDGGG
Ga0334989_0016611_532_675	3300033984	Freshwater	LTHPNVLHPLICLHLYLNPLDQNLLLARDAIINLPVVEVKRRRDGGG
Ga0334989_0019406_353_496	3300033984	Freshwater	LTHPDVLRHLLCLRLHLHPLDQNILLARDAIINPPVVGVKRRRDGRG
Ga0334989_0023416_2000_2143	3300033984	Freshwater	LTHPDVLHHLLCLLLHLHPLDQNLLLAHNAIINPPVVGVKRRRYGGG
Ga0334989_0041984_221_364	3300033984	Freshwater	LTHPYVLRNLLCLHLHLHPLDQNLLLARDAIINPPVVGVKRRMDGGG
Ga0334989_0052128_1899_2042	3300033984	Freshwater	LTHPDILRHLLCLHLHLHPLDQNLLLARDEIINPPVVGVKRRRDGGG
Ga0334989_0066610_1768_1911	3300033984	Freshwater	LTHPDVLRHLLCLHLHLHPLDQNLLLARDAIINQPVVGVKRRRDGGG
Ga0334989_0067391_325_468	3300033984	Freshwater	LTHPGVLRHLLCLHLHLHPLDQNLLLARDAIINPPVVGVKRRRDGGG
Ga0334989_0073900_1031_1174	3300033984	Freshwater	LTQPDVLRHLLCLHLHLHPLDQNLLLARDAIINPPVVGIKRRRDGRG
Ga0334989_0074380_35_184	3300033984	Freshwater	MFLTHPDVLHHLLCLHLHLHPLDQNLLLARNAIINPPVVGVKRWRDGEG
Ga0334989_0076733_709_852	3300033984	Freshwater	LTHLNVLRHLLCLHLHLHPLDPNLLLARDAIINPPVVGVKRRRDGGG
Ga0334989_0088896_930_1091	3300033984	Freshwater	VDRFLIIVLTHPDVLRHLLCLHLHLHPLDLNLLLARDAIINPPVVGVKRRRDG
Ga0334989_0093794_1228_1395	3300033984	Freshwater	VGPVPHNFFTHPDVLRHLLCLHLHLHPLDQNLLLARDAIINPPVVGVRRRRYGGG
Ga0334989_0104134_693_842	3300033984	Freshwater	MFLTQPDVLRHLLCLHLHLHPLDHNLLLARDAIINPPVVGIKRRRDGGG
Ga0334989_0108808_2_178	3300033984	Freshwater	ASPWARFLIIFLTHPDVLRHLLCLHLHLHPLDQNLLLARDAIFNPPVVGVKRRRDGGG
Ga0334989_0113896_299_442	3300033984	Freshwater	LTHPKVLRHLLCLHLHLHPLDQNLLLACDAIINPPVVGVKRRRDGGG
Ga0334989_0113913_1309_1476	3300033984	Freshwater	LDYTGSIVFTHTDVLRHLLCLHLHLHPLDQNLLLARDAIINLPVVGVERRRDGGG
Ga0334989_0117868_826_969	3300033984	Freshwater	LTHPDILRHLLCLHLQLHPLNQNFLLARDAIINLPVVGVKRRRCGGG
Ga0334989_0124193_139_282	3300033984	Freshwater	LTHPDVLRHLLCLHLHLHPLDQNLLLTRDTIINPPVVGVKRRRDGGG
Ga0334989_0129863_966_1109	3300033984	Freshwater	LTHPDVLRHILCLHLHLHPLDQNLLLARDAIINPPFVGVKRRRYGGR
Ga0334989_0133194_396_539	3300033984	Freshwater	LTHPDVLRHLLCHHLHLHPLDQNLLLARDAIINPSVVGVKRRRDGGG
Ga0334989_0146222_1112_1255	3300033984	Freshwater	LTHPDILRHLLCLHLHLHPLDQNLLLARDAIINPPVVGFKRRRDGGG
Ga0334989_0149897_441_590	3300033984	Freshwater	LTHPKVLRHLLCLHLHLHLHPLDQNLLLARDTIINPPVVGVERRRDGGG
Ga0334989_0151562_838_981	3300033984	Freshwater	LTHPDVLRHLLCLYLHLHPLDQNLLFARNAIINPPVVGVKRRRDGGG
Ga0334989_0163391_775_945	3300033984	Freshwater	VWARFLIIVLTHPDVLRHLLCLHLHLHPLDQNLLLARNAIINPPVVGVKRRRDGGG
Ga0334989_0166282_178_342	3300033984	Freshwater	LQTTPTDKSKPDVLLHLLCQHIHLNPLDHNLLVVRDAIINLPVVEVKRRRDGGG
Ga0334989_0167244_874_1017	3300033984	Freshwater	LTHPDVLHHLLCLHLHLHPLDQNLLLARDAIINPPAVGVKRRRDGGG
Ga0334989_0191212_328_471	3300033984	Freshwater	LTHPDVLRHLLCLHLHLHPLDQNILLACDTIINPPVVGVKKRRDGGG
Ga0334989_0193648_155_298	3300033984	Freshwater	LTHPDILRHLLCLHLHLHPLDQNLLLARDAIINLPVVGVKRRRDGGG
Ga0334989_0199352_318_467	3300033984	Freshwater	MFLTHPNVLRHLLCLHLHLHPLDQNLLLARDAIINPPVVGVKRRRDGGG
Ga0334989_0201263_920_1063	3300033984	Freshwater	LTHPDILRPLLCLHLHLHPLDQNLLLARDATINLPVVEVKRRRDGGG
Ga0334989_0229809_94_237	3300033984	Freshwater	LTHPDVLRHLLCLHLHLHPLVQNLLLARDTIINPPVVGVKRRRDGGG
Ga0334989_0241426_683_826	3300033984	Freshwater	LTHPDVLRHLLCLHLHLHPLDQNLLLARDTIINPPVVGVKRRRDGGG
Ga0334989_0245017_540_683	3300033984	Freshwater	LTHPDVLHHLLCLHLHLHPLDQNLLLARDAIINPPVVGVKRRRDGGG
Ga0334989_0263197_27_170	3300033984	Freshwater	LTHPNVLRHLLCLHLHLHPLNQNLLLARDAIINPHVVGVKRRRDGGG
Ga0334989_0291280_268_438	3300033984	Freshwater	VWARFLIIFLTHPDILCHLLCLHLHLHPLDQNLLLARDAIINPSVVGVKRRRDGGG
Ga0334989_0298736_451_618	3300033984	Freshwater	LTHPDVLRPLLCLHLHLRPLDQNLLLAHDAIINLPVVEVKRRRDGGGKGVSIEYK
Ga0334989_0302096_68_211	3300033984	Freshwater	LTHPDVLRHLLCLHLHLHPLDQNLLLARGAIINPPVVGVKRRRDGGG
Ga0334989_0313506_135_278	3300033984	Freshwater	LTHPDVLRHLLCLHLHLHPLDQNLLLARDAIINPPVVGVKRRRYGGG
Ga0334989_0331606_509_658	3300033984	Freshwater	LTHPGVLRHLLCLHLHLHLHPLDQNLLLARDAIINPPVVGVKRRRDGGG
Ga0334989_0336107_632_793	3300033984	Freshwater	MFLTHPDVLRHLLCLHLHLHLHLHPLDQNLLLARDAIINPPVVGVKRRRDGGG
Ga0334989_0338029_203_352	3300033984	Freshwater	LTHPDVLRHLLCLHLHLHLHPLDQNLLLARDAIINPPVVKVKRSKDGGG
Ga0334989_0343900_359_502	3300033984	Freshwater	LTHPDVLRHLLCIHLHLHPLDQNLLLARDAIINPPVVGVKRRRDGGW
Ga0334989_0349242_550_693	3300033984	Freshwater	LTHPYVLRHRLCLHLHLHPLDQNLLLTCDAIINPPVVGVKRRRDGGG
Ga0334989_0362766_356_520	3300033984	Freshwater	LQTTPTYKSKPDVLLHLLCQHIHLNPLDHNLLVIRDAIINLPVVEVKRRRDGGG
Ga0334989_0370785_146_289	3300033984	Freshwater	LTHPDVLRHLLCLHLHLHPLDQNLLLARDAIINPPVVGVKRRRDGGG
Ga0334989_0376792_460_603	3300033984	Freshwater	LTHPDVLRHLLCLHLHLHPLDQNLLLTCDAIINPPVVGVKRRRDGGG
Ga0334989_0428718_137_280	3300033984	Freshwater	LTHPNVLRHLLCLHLHLHPLDQNLLLARDAIINPPVVGVKRRRDGEG
Ga0334989_0429636_387_533	3300033984	Freshwater	LTHPDVLRHLLCLHLHLHPLDQNLLLVARDAIINPPVVGVKRRRDGGG
Ga0334989_0438174_340_489	3300033984	Freshwater	LTHPDVLRHLLCLHLHLHLHPLNQNLLLARDAIINPPVVGVKRRRDGGG
Ga0334989_0459197_366_509	3300033984	Freshwater	LTHPDVLRHLLCLHLHLHPLNQNLLLTRDAIINPHVVGVKRRRDGGG
Ga0334989_0468185_94_237	3300033984	Freshwater	LTHLDILRHLLCLHLHLHPLDQNLLLTLDAIINPPVVEVKRRRDGGG
Ga0334989_0478896_193_336	3300033984	Freshwater	LTHPEVLRHLLCLHLHLHPLDQNLLLARDAIINPSVVGVKRRRDGGG
Ga0334989_0507969_287_436	3300033984	Freshwater	MFLTHPDVLRHLLCLHLHLHPLDQNLLLAHDAIINQPVVGVKRRRDGGG
Ga0334989_0545930_2_151	3300033984	Freshwater	IVFTHTNVLRHLLCHHLHLHPLNQNLLLACDAIINLPVVGVERRRDGGG
Ga0334989_0583682_353_496	3300033984	Freshwater	LTHPEVLRHLLCLHLHLHPIDQNLLLARDAIINPPVVGVKRRRDGGG
Ga0334989_0604993_315_458	3300033984	Freshwater	LTHPNVLRPLFCLHLHLHPLNQNLLLACDAIINLPVVEVKRRRDGGG
Ga0334989_0608182_261_404	3300033984	Freshwater	LTQTDVLRHLLCLHLHLHPLDQNLLLARDAIINPPVVGVKWRRDGGG
Ga0335005_0139137_1278_1427	3300034022	Freshwater	MFLTHPDVLRHLLCLHLHLHPLDQNLLLARDAIINPPVVGVKRRRDGGG
Ga0335005_0402924_71_214	3300034022	Freshwater	LTQTDVLRHLLCLHLHLHPLDQNLLLARDAIINPPVVGVKRRRDGGG
Ga0335005_0620931_343_486	3300034022	Freshwater	LTHPDVLRHLFCLHLHLHPLNQNLLLARDAIINPPVVGVKRRRDGGG
Ga0335005_0717263_32_175	3300034022	Freshwater	LTHPDVLRRLLCLHLHLHPLDQNLLLARDAIINPPVVGIKRRRDGGG
Ga0335001_0234502_85_228	3300034064	Freshwater	LTHPDVLRHLLCLHLHLHPLDQNLLLARNAIINPPVVGVKRRRNGGG
Ga0335001_0707946_386_523	3300034064	Freshwater	HPNVLCHLLCLHLHLHPLDQNLLLARKAIINPPVVGVKRRRDGVG
Ga0334990_0265979_1_117	3300034068	Freshwater	LFCLHLHLHPLNQNLLLARDAIINPPVVGVKRRRDGGG
Ga0334990_0457324_3_182	3300034068	Freshwater	SASAWARFLIIVFTHTDVLRHLLCLHLHLHSLDQNLLLARDAIINLPVVGVERRRDGEG
Ga0334990_0532298_1_171	3300034068	Freshwater	AWARFLIIFLTQTDVLRHLLCLHLHLHPLDQNLLLARDAIINPPVVGVKWRRDGGG
Ga0334990_0628218_16_159	3300034068	Freshwater	LTHPDILRPLLCLHLHLHPLDQNLLLARDAIINLPVVEVKRRRDGGG
Ga0334990_0684952_2_142	3300034068	Freshwater	THLDILRHLLCLHLHLHPLDQNLLLTLDAIINPPVVEVKRRRDGGG
Ga0334990_0738437_373_507	3300034068	Freshwater	PDVLRHLLCLHLHLHPSDQNLLLARDAIINPPVVGVKRRRDGGG
Ga0335037_0712418_399_521	3300034107	Freshwater	VLRHLLCLHLHPLDQNLLLARDAIINLPVVGVERRRDGGG
Ga0335058_0209761_954_1097	3300034121	Freshwater	LTHPDVLRHLLCLHLHLHPLDQNLLLARNAIINPPVVGVKRRRDGGG
Ga0335017_0037199_2519_2662	3300034167	Freshwater	LTHPDILRHLLCLHLHLHPLDQNLLLARDTIINPPVVGVKRRRDGGG
Ga0335017_0098035_203_346	3300034167	Freshwater	LTHPDVLRHLLCLHLHLHPLDQNLLLARDAIFNPPVVGVKRRRDGGG
Ga0335017_0117286_3_149	3300034167	Freshwater	PDVLRHLLCLHLHLHLHLHPLDQNLLLACDAIINPPVVGVKRRRDGGG
Ga0335017_0136322_34_177	3300034167	Freshwater	LTHPDVLCHLLCLHLHLHPLDQNLLLARDAIINPPVVGVKRRRDGGE
Ga0335017_0165701_784_927	3300034167	Freshwater	LTHPDVLRYLLCLHLHLHPLDQNLLLARDAIINPPVVGVKRRRDGGG
Ga0335017_0232555_720_863	3300034167	Freshwater	LTHPDVLRHLLCLHLHLHPSDQNLLLARDAIINPPVVGVKRRRDGGG
Ga0335017_0247148_1_177	3300034167	Freshwater	ASAWAQFLIIFLTHPEVLRHLLCLHLHLHPLDQNLLLARDTIINPPVVGVKRRRDGGG
Ga0335017_0302175_724_891	3300034167	Freshwater	WARFLIIFLTQTDVLRHLLCLHLHLHPLDQNLLLARDAIINPPVVGVKRRRDGGG
Ga0335017_0336183_103_246	3300034167	Freshwater	LTHPDVLRHLLCLHLHLHPLDHKLLLTRDAIINPPVVGVKRRRDGGG
Ga0335017_0336920_582_725	3300034167	Freshwater	LTHPNVLRHLLCLHLHLHPLDQNLLLAHDAIINPPVVGVKRRRDGGG
Ga0335017_0590407_62_217	3300034167	Freshwater	MFLTHPDVLRHLLCLHLHLHLHPLDQNLLLARNSIINPPVVGVKRRRDGGG
Ga0335061_0048955_1337_1483	3300034168	Freshwater	LTHPDVLHHLLCLLLHLHPLDQNLLLAHNAIINPPVVGVKRRRRYGGG
Ga0335061_0059574_781_951	3300034168	Freshwater	VWARFLIIFLTHPDVLRHLLCLHLHLHPSDQNLLLARDAIINPPVVGVKRRRDGGG
Ga0335061_0115907_490_633	3300034168	Freshwater	LTHPGVLRHLLCLHLHLHPLDQNLLLARDAIINPPGVGVKRRRDGGG
Ga0335061_0163382_942_1103	3300034168	Freshwater	MFLTHPDVLRHLLCLHLHLHLHLHPLDQNLLLACDAIINPPVVGVKRRRDGGG
Ga0335061_0173544_128_271	3300034168	Freshwater	LTHPNVLRHLLCLHLHLHPLDQNLLLARKAIINPPVVGVKRRRDGVG
Ga0335061_0359560_2_136	3300034168	Freshwater	PDVLRHLPCLHLHLHPLHQSLLLAHDAIINPPVVGVKRRRDGGG

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.31
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.31
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F088290

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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Geographical Distribution

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