Metagenome Family F088352

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F088352
Family Type	Metagenome
Number of Sequences	109
Average Sequence Length	57 residues
Representative Sequence	MNINSRIKITSEHTSNYVIREIQNQDQLEKYRELEGYGIEVLPVVHNNMAECESCSA
Number of Associated Samples	56
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	5.50 %
% of genes near scaffold ends (potentially truncated)	35.78 %
% of genes from short scaffolds (< 2000 bps)	81.65 %
Associated GOLD sequencing projects	43
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.57

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (55.963 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake (59.633 % of family members)
Environment Ontology (ENVO)	Unclassified (60.550 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Hypersaline (saline) (74.312 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 9.41% β-sheet: 28.24% Coil/Unstructured: 62.35%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.57
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.57
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF13392	HNH_3	5.50
PF00145	DNA_methylase	0.92
PF05766	NinG	0.92
PF09414	RNA_ligase	0.92
PF07087	DUF1353	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG0270	DNA-cytosine methylase	Replication, recombination and repair [L]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.96 %
All Organisms	root	All Organisms	44.04 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.96 %
Viruses	superkingdom	All Organisms → Viruses	42.20 %
cellular organisms	root	All Organisms → cellular organisms	1.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.96 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	37.61 %
environmental samples	no rank	All Organisms → Viruses → environmental samples	4.59 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.96 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	37.61 %
uncultured marine virus	species	All Organisms → Viruses → environmental samples → uncultured marine virus	4.59 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.92 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.96 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	37.61 %
uncultured marine virus	species	All Organisms → Viruses → environmental samples → uncultured marine virus	4.59 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.92 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.92 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001265\|BBAY84_15154824	Not Available	501	Open in IMG/M
3300005912\|Ga0075109_1007306	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	5194	Open in IMG/M
3300005913\|Ga0075108_10072819	All Organisms → Viruses → Predicted Viral	1281	Open in IMG/M
3300005913\|Ga0075108_10092531	All Organisms → Viruses → Predicted Viral	1114	Open in IMG/M
3300005913\|Ga0075108_10110048	All Organisms → Viruses → Predicted Viral	1004	Open in IMG/M
3300005914\|Ga0075117_1015688	All Organisms → Viruses → Predicted Viral	3029	Open in IMG/M
3300005914\|Ga0075117_1141960	Not Available	693	Open in IMG/M
3300005931\|Ga0075119_1022750	All Organisms → Viruses → Predicted Viral	1846	Open in IMG/M
3300005931\|Ga0075119_1050414	All Organisms → Viruses → Predicted Viral	1042	Open in IMG/M
3300005931\|Ga0075119_1054495	Not Available	984	Open in IMG/M
3300005931\|Ga0075119_1066169	Not Available	855	Open in IMG/M
3300005936\|Ga0075124_10035115	All Organisms → Viruses → Predicted Viral	2097	Open in IMG/M
3300007074\|Ga0075110_1057646	Not Available	896	Open in IMG/M
3300011185\|Ga0136597_1009281	All Organisms → Viruses → Predicted Viral	2482	Open in IMG/M
3300011187\|Ga0136596_1093480	Not Available	590	Open in IMG/M
3300011188\|Ga0136587_1002386	All Organisms → Viruses → Predicted Viral	4935	Open in IMG/M
3300012029\|Ga0136572_1008652	Not Available	1824	Open in IMG/M
3300012030\|Ga0136599_1046490	Not Available	621	Open in IMG/M
3300012030\|Ga0136599_1062266	Not Available	538	Open in IMG/M
3300012031\|Ga0136561_1042837	Not Available	702	Open in IMG/M
3300012031\|Ga0136561_1044241	All Organisms → Viruses → environmental samples → uncultured marine virus	687	Open in IMG/M
3300012031\|Ga0136561_1059171	All Organisms → Viruses → environmental samples → uncultured marine virus	561	Open in IMG/M
3300012031\|Ga0136561_1065187	Not Available	525	Open in IMG/M
3300012145\|Ga0136566_1030683	Not Available	958	Open in IMG/M
3300012145\|Ga0136566_1034985	Not Available	877	Open in IMG/M
3300012147\|Ga0136588_1019464	All Organisms → Viruses → Predicted Viral	1293	Open in IMG/M
3300012147\|Ga0136588_1037331	Not Available	831	Open in IMG/M
3300012147\|Ga0136588_1045161	Not Available	730	Open in IMG/M
3300012147\|Ga0136588_1050668	All Organisms → cellular organisms → Bacteria → Proteobacteria	673	Open in IMG/M
3300012147\|Ga0136588_1051559	Not Available	665	Open in IMG/M
3300012147\|Ga0136588_1075900	Not Available	512	Open in IMG/M
3300012178\|Ga0136557_1123036	Not Available	585	Open in IMG/M
3300012182\|Ga0136556_1042229	All Organisms → Viruses → Predicted Viral	1358	Open in IMG/M
3300012182\|Ga0136556_1066351	Not Available	993	Open in IMG/M
3300012182\|Ga0136556_1102799	Not Available	733	Open in IMG/M
3300012182\|Ga0136556_1134672	Not Available	609	Open in IMG/M
3300012182\|Ga0136556_1168777	Not Available	525	Open in IMG/M
3300012267\|Ga0136591_1037833	Not Available	819	Open in IMG/M
3300012268\|Ga0136590_1085683	Not Available	502	Open in IMG/M
3300012270\|Ga0136604_1019609	All Organisms → Viruses → Predicted Viral	1801	Open in IMG/M
3300012270\|Ga0136604_1101971	Not Available	612	Open in IMG/M
3300012270\|Ga0136604_1118204	Not Available	560	Open in IMG/M
3300012271\|Ga0136555_1027827	All Organisms → Viruses → Predicted Viral	1273	Open in IMG/M
3300022821\|Ga0222673_1014606	All Organisms → Viruses → Predicted Viral	1233	Open in IMG/M
3300022821\|Ga0222673_1042620	Not Available	567	Open in IMG/M
3300022851\|Ga0222691_1052019	Not Available	536	Open in IMG/M
3300022856\|Ga0222671_1003655	All Organisms → Viruses → Predicted Viral	3581	Open in IMG/M
3300022856\|Ga0222671_1031070	Not Available	1052	Open in IMG/M
3300022856\|Ga0222671_1083852	Not Available	556	Open in IMG/M
3300022864\|Ga0222665_1071594	Not Available	593	Open in IMG/M
3300022871\|Ga0222628_1005908	All Organisms → Viruses → Predicted Viral	3203	Open in IMG/M
3300022871\|Ga0222628_1007505	Not Available	2746	Open in IMG/M
3300023235\|Ga0222634_1000251	Not Available	30341	Open in IMG/M
3300023242\|Ga0222708_1001035	Not Available	7027	Open in IMG/M
3300023242\|Ga0222708_1031915	Not Available	792	Open in IMG/M
3300023245\|Ga0222655_1004047	All Organisms → Viruses → Predicted Viral	3747	Open in IMG/M
3300023245\|Ga0222655_1005094	Not Available	3174	Open in IMG/M
3300023245\|Ga0222655_1036546	Not Available	792	Open in IMG/M
3300025425\|Ga0208646_1022810	All Organisms → Viruses → Predicted Viral	1469	Open in IMG/M
3300025438\|Ga0208770_1031547	All Organisms → Viruses → Predicted Viral	1246	Open in IMG/M
3300025502\|Ga0208903_1049789	All Organisms → Viruses → Predicted Viral	1058	Open in IMG/M
3300025601\|Ga0208768_1008068	All Organisms → Viruses → Predicted Viral	3415	Open in IMG/M
3300028348\|Ga0306893_102490	All Organisms → Viruses → Predicted Viral	2494	Open in IMG/M
3300028361\|Ga0306872_103190	All Organisms → Viruses → Predicted Viral	3779	Open in IMG/M
3300028361\|Ga0306872_113476	All Organisms → Viruses → Predicted Viral	1201	Open in IMG/M
3300028361\|Ga0306872_115245	All Organisms → Viruses → Predicted Viral	1091	Open in IMG/M
3300028361\|Ga0306872_137420	All Organisms → Viruses → environmental samples → uncultured marine virus	532	Open in IMG/M
3300028364\|Ga0306898_1031707	Not Available	672	Open in IMG/M
3300028364\|Ga0306898_1034113	All Organisms → Viruses → environmental samples → uncultured marine virus	633	Open in IMG/M
3300028366\|Ga0306907_1008727	All Organisms → Viruses → Predicted Viral	1846	Open in IMG/M
3300028367\|Ga0306900_1007620	All Organisms → Viruses → Predicted Viral	1865	Open in IMG/M
3300028368\|Ga0306899_1028109	All Organisms → Viruses → Predicted Viral	1068	Open in IMG/M
3300028374\|Ga0306906_1030479	Not Available	929	Open in IMG/M
3300028374\|Ga0306906_1054988	Not Available	604	Open in IMG/M
3300028376\|Ga0306912_1014035	All Organisms → Viruses → Predicted Viral	1734	Open in IMG/M
3300028376\|Ga0306912_1047327	Not Available	673	Open in IMG/M
3300028376\|Ga0306912_1058418	Not Available	577	Open in IMG/M
3300028377\|Ga0306869_1084866	Not Available	585	Open in IMG/M
3300028378\|Ga0306868_1010481	All Organisms → Viruses → Predicted Viral	2742	Open in IMG/M
3300028405\|Ga0306909_101303	All Organisms → Viruses → Predicted Viral	4484	Open in IMG/M
3300028405\|Ga0306909_107895	All Organisms → Viruses → Predicted Viral	1216	Open in IMG/M
3300028415\|Ga0306867_1010540	All Organisms → Viruses → Predicted Viral	2342	Open in IMG/M
3300031212\|Ga0307959_1124149	Not Available	646	Open in IMG/M
3300031212\|Ga0307959_1179211	Not Available	501	Open in IMG/M
3300031215\|Ga0307935_1018248	All Organisms → Viruses → Predicted Viral	1398	Open in IMG/M
3300031215\|Ga0307935_1031903	Not Available	966	Open in IMG/M
3300031215\|Ga0307935_1041030	Not Available	813	Open in IMG/M
3300031215\|Ga0307935_1044550	Not Available	768	Open in IMG/M
3300031216\|Ga0307980_1056968	Not Available	839	Open in IMG/M
3300031216\|Ga0307980_1059741	Not Available	813	Open in IMG/M
3300031216\|Ga0307980_1060876	All Organisms → Viruses → environmental samples → uncultured marine virus	803	Open in IMG/M
3300031216\|Ga0307980_1122316	Not Available	510	Open in IMG/M
3300031217\|Ga0307940_1030329	All Organisms → Viruses → Predicted Viral	1222	Open in IMG/M
3300031217\|Ga0307940_1096870	Not Available	552	Open in IMG/M
3300031217\|Ga0307940_1105171	Not Available	525	Open in IMG/M
3300031218\|Ga0307976_1095193	Not Available	654	Open in IMG/M
3300031222\|Ga0307972_1090141	All Organisms → Viruses → Predicted Viral	1319	Open in IMG/M
3300031222\|Ga0307972_1217482	Not Available	521	Open in IMG/M
3300031269\|Ga0307983_1015488	All Organisms → Viruses → Predicted Viral	1785	Open in IMG/M
3300031269\|Ga0307983_1021749	All Organisms → Viruses → Predicted Viral	1402	Open in IMG/M
3300031269\|Ga0307983_1064853	Not Available	662	Open in IMG/M
3300031269\|Ga0307983_1081972	Not Available	562	Open in IMG/M
3300031329\|Ga0307934_1049934	Not Available	1200	Open in IMG/M
3300031403\|Ga0307933_1078132	All Organisms → Viruses → Predicted Viral	1005	Open in IMG/M
3300031403\|Ga0307933_1094370	Not Available	875	Open in IMG/M
3300031403\|Ga0307933_1180199	Not Available	538	Open in IMG/M
3300031600\|Ga0307930_1031160	All Organisms → Viruses → Predicted Viral	2053	Open in IMG/M
3300031600\|Ga0307930_1238425	Not Available	503	Open in IMG/M
3300031613\|Ga0307978_1020245	All Organisms → Viruses → Predicted Viral	3556	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.08%
Host-Associated	Host-Associated	0.92%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	99.08%
Algae	Host-Associated → Algae	0.92%

Habitat	Taxonomy	Distribution
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	99.08%
Green Algae	Host-Associated → Algae → Green Algae	0.92%

Habitat	Taxonomy	Distribution
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	99.08%
Ectosymbionts	Host-Associated → Algae → Green Algae → Ectosymbionts	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	99.08%
Unclassified	Host-Associated → Algae → Green Algae → Ectosymbionts → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Saline Lake	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake	59.63%
Saline Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water	38.53%
Lake Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Lake Water	0.92%
Macroalgal Surface	Host-Associated → Algae → Green Algae → Ectosymbionts → Unclassified → Macroalgal Surface	0.92%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001265	Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY84	Host-Associated	Open in IMG/M
3300005912	Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKD	Environmental	Open in IMG/M
3300005913	Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UK1	Environmental	Open in IMG/M
3300005914	Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKJ	Environmental	Open in IMG/M
3300005931	Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UK9	Environmental	Open in IMG/M
3300005936	Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKS	Environmental	Open in IMG/M
3300007074	Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UK8	Environmental	Open in IMG/M
3300011185	Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E11 #898	Environmental	Open in IMG/M
3300011187	Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E11 #897	Environmental	Open in IMG/M
3300011188	Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Filla 1 #563	Environmental	Open in IMG/M
3300012029	Saline lake microbial communities from Deep lake, Antarctica - Metagenome #83	Environmental	Open in IMG/M
3300012030	Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Filla 2 #697	Environmental	Open in IMG/M
3300012031	Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Hop E1 #498	Environmental	Open in IMG/M
3300012145	Saline lake microbial communities from Deep lake, Antarctica - Metagenome #2	Environmental	Open in IMG/M
3300012147	Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Filla 1 #564	Environmental	Open in IMG/M
3300012178	Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E6 #832	Environmental	Open in IMG/M
3300012182	Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E6 #831	Environmental	Open in IMG/M
3300012267	Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Filla 3 #767	Environmental	Open in IMG/M
3300012268	Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Filla 3 #765	Environmental	Open in IMG/M
3300012270	Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Filla E10 #628	Environmental	Open in IMG/M
3300012271	Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E5 #432	Environmental	Open in IMG/M
3300022821	Saline water microbial communities from Ace Lake, Antarctica - #801	Environmental	Open in IMG/M
3300022851	Saline water microbial communities from Ace Lake, Antarctica - #1237	Environmental	Open in IMG/M
3300022856	Saline water microbial communities from Ace Lake, Antarctica - #797	Environmental	Open in IMG/M
3300022864	Saline water microbial communities from Ace Lake, Antarctica - #653	Environmental	Open in IMG/M
3300022871	Saline water microbial communities from Ace Lake, Antarctica - #95	Environmental	Open in IMG/M
3300023235	Saline water microbial communities from Ace Lake, Antarctica - #50	Environmental	Open in IMG/M
3300023242	Saline water microbial communities from Ace Lake, Antarctica - #1576	Environmental	Open in IMG/M
3300023245	Saline water microbial communities from Ace Lake, Antarctica - #423	Environmental	Open in IMG/M
3300025425	Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UK8 (SPAdes)	Environmental	Open in IMG/M
3300025438	Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UK9 (SPAdes)	Environmental	Open in IMG/M
3300025502	Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKJ (SPAdes)	Environmental	Open in IMG/M
3300025601	Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UK1 (SPAdes)	Environmental	Open in IMG/M
3300028348	Saline lake microbial communities from Deep lake, Antarctica - Metagenome #293 (v2)	Environmental	Open in IMG/M
3300028361	Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Hop E1 #498 (v2)	Environmental	Open in IMG/M
3300028364	Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Filla 1 #564 (v2)	Environmental	Open in IMG/M
3300028366	Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E11 #898 (v2)	Environmental	Open in IMG/M
3300028367	Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Filla 3 #765 (v2)	Environmental	Open in IMG/M
3300028368	Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Filla 3 #764 (v2)	Environmental	Open in IMG/M
3300028374	Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E11 #897 (v2)	Environmental	Open in IMG/M
3300028376	Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Filla E10 #628 (v2)	Environmental	Open in IMG/M
3300028377	Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E6 #833 (v2)	Environmental	Open in IMG/M
3300028378	Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E6 #832 (v2)	Environmental	Open in IMG/M
3300028405	Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Filla 2 #697 (v2)	Environmental	Open in IMG/M
3300028415	Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E6 #831 (v2)	Environmental	Open in IMG/M
3300031212	Saline water microbial communities from Organic Lake, Antarctica - #494	Environmental	Open in IMG/M
3300031215	Saline water microbial communities from Organic Lake, Antarctica - #92	Environmental	Open in IMG/M
3300031216	Marine microbial communities from Ellis Fjord, Antarctic Ocean - #1060	Environmental	Open in IMG/M
3300031217	Saline water microbial communities from Organic Lake, Antarctica - #124	Environmental	Open in IMG/M
3300031218	Saline water microbial communities from Organic Lake, Antarctica - #919	Environmental	Open in IMG/M
3300031222	Saline water microbial communities from Organic Lake, Antarctica - #780	Environmental	Open in IMG/M
3300031269	Marine microbial communities from Ellis Fjord, Antarctic Ocean - #991	Environmental	Open in IMG/M
3300031329	Saline water microbial communities from Organic Lake, Antarctica - #90	Environmental	Open in IMG/M
3300031403	Saline water microbial communities from Organic Lake, Antarctica - #88	Environmental	Open in IMG/M
3300031600	Saline water microbial communities from Organic Lake, Antarctica - #46	Environmental	Open in IMG/M
3300031613	Marine microbial communities from Ellis Fjord, Antarctic Ocean - #1056	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
BBAY84_151548241	3300001265	Macroalgal Surface	TSLETGNTVFRTIETQDQLEKFRELEGYDITVMPVVHSSEEVCVACEG*
Ga0075109_10073066	3300005912	Saline Lake	MFIGNRIKITSEETTNYVIRDIQTQDQLDKYRGLEGYGIEVLPVIHNNMAECESCSA*
Ga0075108_100728192	3300005913	Saline Lake	MFIGNRIKITSQETTNYVIREIQNQDQLEKYRELEGYGIEVLPVVHNNMAECESCSA*
Ga0075108_100925311	3300005913	Saline Lake	VYNCKFTMNINSRIKITSEHTTNYVIREIQNQEHLEKYRELKGYGIEVLPVIHSNMA
Ga0075108_101100481	3300005913	Saline Lake	MNINSRIKITSEHSTNYVIREIQNQDQLEKYRELKGYGMEVLPVIHNNMVECESCSA*
Ga0075117_10156881	3300005914	Saline Lake	MNINSRIKITSEHTSNYVIRTIENQDQLEKYRELKGYGMEVLPVIHNNMVECESCSA*
Ga0075117_11419603	3300005914	Saline Lake	MNINSRIKITSEHTTNYVIREIQNQEQIEKYRELEGYGIEVLPVVHSSADVCIACES*
Ga0075119_10227503	3300005931	Saline Lake	MFIGNRIKITSQETTNYVIREIQNQDQLEKYRELEGYGIEVLPVVHSSEAVCVACEG*
Ga0075119_10504142	3300005931	Saline Lake	MNINSRIKITSEHTSNYVIREIQNQDQLEKYRELEGYGIEVLPVIHNNMA
Ga0075119_10544953	3300005931	Saline Lake	MFIGNRIKITSEETTNYVIRDIKTQDQLEKYRELKGYGIEVLPVVHSFADSSCVSCGR*
Ga0075119_10661692	3300005931	Saline Lake	MNINSRIKITSEHTSNYVIRTIENQDQLEKYRELKGYGMEVLPVIHSNMAECESCSA*
Ga0075124_100351154	3300005936	Lake Water	MFIGNRIKITSQETTNYVIREIQNQDQLEKYRELEGYGIEVLPVIHNNMAECE
Ga0075110_10576461	3300007074	Saline Lake	MFIGNRIKITSQETTNYVIREIQNQDQLEKYRELEGYGIEVLPVIHNNMAECESCSA*
Ga0136597_10092812	3300011185	Saline Lake	MNINSRIKITSEHTSNYVIRTIENQEQLEKYRELKGYGIEVLPVVHNNMAECESCSA*
Ga0136596_10934801	3300011187	Saline Lake	GDFSIVYNCKFTMNINARIKITSEHTSNYVIRTIENQEQLEKYRELEGYDIEVLPVIHNNMAECESCSA*
Ga0136587_10023862	3300011188	Saline Lake	MFIGNRIKITSEETTNYVIRDIQTQDQLEKYRELEGYGIEVLPVVHNNMAECESCSA*
Ga0136572_10086522	3300012029	Saline Lake	MFIGNRIKITSEETANYVIRDIQTQEQLDKYRGLEGYGIEVLPVVHNNMAECESCSA*
Ga0136599_10464901	3300012030	Saline Lake	MNINSRIKITSEHTSNYVTRTIENQDQLEKYRKLEGYGIEVLPVIHNNMAECESCSA*
Ga0136599_10622661	3300012030	Saline Lake	MFIGNRIKITSEETANYVIRDIQTQEQLDKYRGLEGYSIEVLPVVHNNMAECESCSA*
Ga0136561_10428371	3300012031	Saline Lake	MFIGNRIKITSEETANYVIRDIQTQEQLEKYRELEGYGIEVLPVVHSSEDVCVACEG*
Ga0136561_10442411	3300012031	Saline Lake	MNINSRIKITSEHSSNYVIREIQNQDQLEKYRELKGYGIEVLPVIHNNMAECESCSA*
Ga0136561_10591711	3300012031	Saline Lake	MNINARIKITSLHTTNYVIREIQTQEQLEKYRELEGYDILVLPVIHNSMVECESC
Ga0136561_10651871	3300012031	Saline Lake	MFIGNRIKITSEETANYVMRDIQTQEQLDKYRGLEGYGIEVLPVIHSFTDSSCVSCEGGIVLVTQ
Ga0136566_10306831	3300012145	Saline Lake	MNINARIKITSEHTSSYVIRTIENQDQLEKYRELKGYGIEVLPVVHNNMAECESCSA*
Ga0136566_10349852	3300012145	Saline Lake	MFIGNRIKITSEETTNYVIREIQNQEQLEKYRELKGYGIEVLPVIHNNMAECESCSA*
Ga0136588_10194642	3300012147	Saline Lake	MFIGNRIKITSQETTNYVIRDIQTQEQLDKYRELEGYGIEVLPVVHSNMAECESCSA*
Ga0136588_10373311	3300012147	Saline Lake	MNINSRIKITSEHTSNHVIRTIENQEQLEKYRELEGYGIEVLPDVHSSADVCVACEG
Ga0136588_10451612	3300012147	Saline Lake	IKITSEETTNYVIRDIQTQDQLEKYRELEGYGIEVLPVVHNNMAECESCSA*
Ga0136588_10506683	3300012147	Saline Lake	IGNRIKITSQETTNYVIRDIQTQEQLDKYRGLEGYGIEVLPVIHNNMAECESCSA*
Ga0136588_10515592	3300012147	Saline Lake	IKITSEETTNYVIRDIQTQDQLEKYRELEGYGIEVLPVVHSFADSSCVSCEG*
Ga0136588_10759001	3300012147	Saline Lake	KQTGLVYRKSFESPVVYNCQFTMNINSRIKITSEHSSNYVIREIQNQDQLEKYRELKGYGIEVLPVIHNNMAECESCSA*
Ga0136557_11230361	3300012178	Saline Lake	MNINARIKITSEHTRNYVIRTIENQDQLEKYRELEGYDIEVLPVIHNNM
Ga0136556_10422292	3300012182	Saline Lake	MNINSRIKITSLHTSNYVIREIQNQEQLEKYRELEGYDIEVLPVVHNNMAECESCSA*
Ga0136556_10663512	3300012182	Saline Lake	MNINSRIKITSLHTSNYVIREIQNQEQLEKYRELEGYGIEVLPVVHNNMAECESCSA*
Ga0136556_11027991	3300012182	Saline Lake	MNINSRIKITSEHTSNYVIREIQNQEQLEKYRELKGYGIEVLPVVHNNMAECESCSA*
Ga0136556_11346721	3300012182	Saline Lake	MFIGNRIKITSEETANYVIRDIQNQEQLEKYRKLEGYGIEVLPVVHSSEDVCVACEG*
Ga0136556_11687772	3300012182	Saline Lake	MNINSRIKITSEHTSSYVIRTIENQDQLEKYRELKGYGIEVLPVIHNNMAECESCSA*
Ga0136591_10378332	3300012267	Saline Lake	MLIGNRIKITSQETTNYVIRDIQTQEQLDKYRGLEGYGIEVLPVIHNNMAECESCSA*
Ga0136590_10856831	3300012268	Saline Lake	DFSIVYNCKFTMNINSRIKITSLHTSNYVIRDIQTQEQLEKYRELKGYGIEVLPVIHNNMAECESCSA*
Ga0136604_10196091	3300012270	Saline Lake	MNINYRIKITSLHTSNYVIREIQNQEQLEKYRELEGYGIDVLPVIHSN
Ga0136604_11019711	3300012270	Saline Lake	MFIGNRIKITSEETANYVIRDIQTQEQLEKYRELEGYGIEVLPVIHNNMAECESCSA*
Ga0136604_11182041	3300012270	Saline Lake	MFIGNRIKITSEHTSNYVIRTIDNQEQLEKYRELEGYDIEVLPVVHNNMAECEFCSA*
Ga0136555_10278274	3300012271	Saline Lake	MFIGNRIKITSEETANYVIRDIQNQEQLEKYRELEGYGIEVLPVIHNNMAECESCSA*
Ga0222673_10146062	3300022821	Saline Water	SQETTNYVIREIQNQDQLEKYRELEGYGIEVLPVIHSNMAECESCSA
Ga0222673_10426201	3300022821	Saline Water	MFIGNRIKITSQETTNYVIREIQNQDQLEKYRELEGYGIEVLPVIHNNMAECESCSA
Ga0222691_10520192	3300022851	Saline Water	MNINSRIKITSEHTSNYVIRTIENQDQLEKYRELKGYGMEVLPVIHNNMVECESCSA
Ga0222671_10036554	3300022856	Saline Water	MNINSRIKITSEHTSNYVIREIQNQDQLEKYRELEGYGIEVLPVVHNNMAECESCSA
Ga0222671_10310701	3300022856	Saline Water	MFIGNRIKITSQETTNYVIREIQNQDQLEKYRELEGYGIEVLPVVHNHMTECESCSA
Ga0222671_10838521	3300022856	Saline Water	MFIGNRIKITSQETTNYVIREIQTQEQLEKYRELEGYGIEVLPVIHSFADSSCISCEGXGIVLVTQ
Ga0222665_10715942	3300022864	Saline Water	MFIGNRIKITSQETTNYVIREIQTQEQLEKYRELEGYGIEVLPVIHSF
Ga0222628_10059083	3300022871	Saline Water	MNINSRIKITSEHSTNYVIREIQNQDQLEKYRELEGYGIEVLPVIHSFVDSSCISCEG
Ga0222628_10075052	3300022871	Saline Water	MFIGNRIKITSQETTNYVIREIQNQDQLEKYRELEGYGIEVLPVVHSSEAVCVACEG
Ga0222634_100025126	3300023235	Saline Water	MFIGNRIKITSEETTNYVIRDIQTQDQLDKYRGLEGYGIEVLPVIHNNMAECESCSA
Ga0222708_10010352	3300023242	Saline Water	MFIGNRIKITSEETTNYVIRDIQTQEQLDKYRGLEGYGIEVLPCCPQQHGRM
Ga0222708_10319151	3300023242	Saline Water	MFIGNRIKITSEETANYVIRDIQTQEQLDKYRGLEGYGIEVLPVVHSYADSGCVSCGR
Ga0222655_10040477	3300023245	Saline Water	MFIGNRIKITSQETTNYVIREIQNQDQLEKYRELEGYGIEVLPVIHSFVDSSCISCEG
Ga0222655_10050948	3300023245	Saline Water	MNINSRIKITSEHTSNYVIREIQTQEQLEKYRELESYGIEVLPVVHNNMAECESCSA
Ga0222655_10365461	3300023245	Saline Water	MFIGNRIKITSEETANYVIRDIQNQEQLEKYRELEGYGIEVLPVIHNNMAECESCSA
Ga0208646_10228102	3300025425	Saline Lake	MNINSRIKITSEHSTNYVIREIQNQDQLEKYRELEGYGIEVLPVIHSFAD
Ga0208770_10315472	3300025438	Saline Lake	MNINSRIKITSEHTSNYVIRTIENQDQLEKYRELKGYGMEVLPVIHSNMAECESCSA
Ga0208903_10497893	3300025502	Saline Lake	MNINSRIKITSLHTSNYVIREIQNQEQIEKYRELEGYGIEVLPVVHSNMAECESCS
Ga0208768_10080681	3300025601	Saline Lake	MNINSRIKITSLHTSNYVIREIQNQEQLEKYRELKGYGIEVLPVIHSFADSSCISCEG
Ga0306893_1024903	3300028348	Saline Lake	MFIGNRIKITSEETTNYVIRDIQTQDQLEKYRELEGYGIEVLPVVHNNMAECESCSA
Ga0306872_1031907	3300028361	Saline Lake	MNILSRIKITSLHTTNYVIRTIENQEQLEKYRELEGYGIEVLPDVHSSADVCVACEG
Ga0306872_1134762	3300028361	Saline Lake	MFIGNRIKITSEETANYVIRDIQTQEQLDKYRGLEGYGIEVLPVVHNNMAECESCSA
Ga0306872_1152454	3300028361	Saline Lake	MFIGNRIKITSEETTNYVIRDIQTQEQLDKYRGLEGYGIEVLPVVHSFTDSSYVSREG
Ga0306872_1374201	3300028361	Saline Lake	MNINSRIKITSEHSSNYVIREIQNQDQLEKYRELKGYGIEVLPVIHNNMAECESCSA
Ga0306898_10317071	3300028364	Saline Lake	RIKITSEETTNYVIRDIQTQDQLEKYRELEGYGIEVLPVVHSFADSSCVSCEG
Ga0306898_10341131	3300028364	Saline Lake	MNINARIKITSLHTTNYVIREIQTQEQLEKYRELEGYDILVLPVIHNS
Ga0306907_10087272	3300028366	Saline Lake	MNINSRIKITSEHTSNYVIRTIENQEQLEKYRELKGYGIEVLPVVHNNMAECESCSA
Ga0306900_10076202	3300028367	Saline Lake	MNINSRIKITSLHTSNYVIRDIQTQEQLEKYRELKGYGIEVLPVIHNNMAECESCSA
Ga0306899_10281091	3300028368	Saline Lake	IVYNCKFTMNINSRIKITSLHTSNYVIRDIQTQEQLEKYRELKGYGIEVLPVIHNNMAECESCSA
Ga0306906_10304792	3300028374	Saline Lake	MNINSRIKITSEHTSNYVIRTIENQDQLEKYRELKGYGIEVLPVIHNNMAECESCSA
Ga0306906_10549881	3300028374	Saline Lake	MNINARIKITSEHTSNYVIRTIENQEQLEKYRELEGYDIEVLPVIHNNMAECESCSA
Ga0306912_10140353	3300028376	Saline Lake	MNINSRIKITSEHTSNYVIRTIDNQEQLEKYRKLEGYGIEVLPVIHNNMAECESCSA
Ga0306912_10473271	3300028376	Saline Lake	MFIGNRIKITSEETANYVIRDIQTQEQLEKYRELEGYGIEVLPVIHNNMAECESCSA
Ga0306912_10584181	3300028376	Saline Lake	MNINSRIKITSLHTSNYVIREIQNQEQLEKYRKLEGYGIEVLPVIHSSEDVCVACEG
Ga0306869_10848661	3300028377	Saline Lake	MFIGNRIKITSEETANYVIRDIQNQEQLEKYRKLEGYGIEVLPVVHSSEDVCVACEG
Ga0306868_10104812	3300028378	Saline Lake	MNINARIKITSEHTSSYVIRTIENQDQLEKYRELKGYGIEVLPVIHNNMAECESCSA
Ga0306909_1013037	3300028405	Saline Lake	MNINSRIKITSEHTSNYVTRTIENQDQLEKYRKLEGYGIEVLPVIHNNMAECESCSA
Ga0306909_1078953	3300028405	Saline Lake	MNINARIKITSLHTSNYVIRDIQTQEQLEKYRKLEGYGIEVLPVVHNNMAECE
Ga0306867_10105403	3300028415	Saline Lake	MNINSRIKITSEHTSNYVIREIQNQEQLEKYRELKGYGIEVLPVVHNNMAECESCSA
Ga0307959_11241492	3300031212	Saline Water	FSIVYNCKFTMNINSRIKITSEHTSNYVIRTIENQEQLEKYRELEGYGIEVLPVIHSSEDVCIACEG
Ga0307959_11792111	3300031212	Saline Water	MNINARIKITSLHTSNYVIREIQNQEQLEKYRKLDGYGIEVLPVVHNNMAECESC
Ga0307935_10182482	3300031215	Saline Water	MNINSRIKITSLHTSNYVIREIQNQEQLEKYRELKGYGIEVLPVVHSNMAECESWSA
Ga0307935_10319031	3300031215	Saline Water	MNINARIKITSLHTSNYVIREIQNQEQLEKYRKLDGYGIEVLPVVHNNMAECESCSA
Ga0307935_10410302	3300031215	Saline Water	MFIGNRIKITSEETANYVIRDIQNQDQLEKYRELKGYGIEVLPVVHSSEDVCVACEG
Ga0307935_10445502	3300031215	Saline Water	MFIGNRIKITSQETTNYVIRDIQTQEQLDKYRELKGYGIEVLPVIHNNM
Ga0307980_10569681	3300031216	Saline Water	MFIGNRIKITSEETANYVIRDIQTQEQLEKYRELKGYGIEVLPVVHSFADSSCISCEG
Ga0307980_10597412	3300031216	Saline Water	MNINSRIKISSEHTSNYVIRDIQTQEQLEKYRKLEGYGIEVLPVIHSNMAECESCSA
Ga0307980_10608762	3300031216	Saline Water	MNINSRIKITSLHTSNYVIREIQNQDQLEKYRELEGYGIEVLPVVHNNMAECESCSA
Ga0307980_11223162	3300031216	Saline Water	MNINSRVKITSLHTSNYVIREIQNQEQLEKYRKLDGYGIEVLPVVHNNM
Ga0307940_10303291	3300031217	Saline Water	MNINARIKITSEHTSNYVIRTIENQDQLEKYRELKGYGIEVLPVVHNNMAECESCSA
Ga0307940_10968701	3300031217	Saline Water	SIVYNCKFTMNINARIKITSLHTSNYVIREIQNQDQLDKYRGLEGYGIEVLPVIHNNMAECESCSA
Ga0307940_11051711	3300031217	Saline Water	MNINARIKITSLHTSNYVIREIQNQEQLEKYRELEGYGIEVLPAVHNNMAECESCSA
Ga0307976_10951931	3300031218	Saline Water	MNINARIKITSLHTSNYVIREIQNQEQLEKYRKLDGYGIEVLPVVH
Ga0307972_10901413	3300031222	Saline Water	MNILDRIKITSEHSTNYVIREIQNQEQLEKYRKLDGYGIEVLPVVHNNMAECESCSA
Ga0307972_12174821	3300031222	Saline Water	MNINARIKITSLHTTNYVIREIQNQEQLEKYRKLDGYGIEVLPVVHNNMAECESC
Ga0307983_10154883	3300031269	Saline Water	MFIGNRIKITSEETANYVIRDIQNQDQLEKYRELKGYGIEVLPVVHSFADSSCISCEG
Ga0307983_10217492	3300031269	Saline Water	MNINARIKITSLHTTNYVIREIQNQEQLDKYRELKGYRIEVLPVIHNNMAECESCSA
Ga0307983_10648531	3300031269	Saline Water	NLIPQKWGVFLLVYNCKFTMNINSRIKITSLHTSNYVIREIQNQEQLEKYRELKGYGIEVLPVVHSNMAECESWSA
Ga0307983_10819721	3300031269	Saline Water	MNINSRIKITSEHTSNYVIRTIENQGQLEKYRKLEGYGIEVLPVVHSFADSSCVSCEG
Ga0307934_10499342	3300031329	Saline Water	MNINARIKITSLHTSNYVIREIQNQEQLEKYRGLEGYGIEVLPVVHNNMAECESCSA
Ga0307933_10781321	3300031403	Saline Water	VYNCKFTMNINSRIKITSLHTSNYVIRTIENQEQLDKYRELKGYGIEVLPVVHNNMAECESCSA
Ga0307933_10943701	3300031403	Saline Water	TFMFIGNRIKITSEETANYVIRDIQTQEQLEKYRELKGYGIEVLPVVHSFADSSCISCEG
Ga0307933_11801992	3300031403	Saline Water	MNINARIKITSLHTSNYVIREIQNQEQLEKYRGLEGYGIEVLPVIHNNMAECES
Ga0307930_10311603	3300031600	Saline Water	MNILDRIKITSEHTSNYVIITIEDQGQLEKYRELEGYGIEVLPVIHNNMAECES
Ga0307930_12384251	3300031600	Saline Water	MVYNCKFTMNINSRIKITSLHTSNYVIRTIENQDQLDKYRELKGYGIEVLPVVHSNMAECESCSA
Ga0307978_102024512	3300031613	Saline Water	IKITSEETANYVMRDIQTQEQLDKYRGLEGYGIEVLPVIHNNMAECESCSA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F088352

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences