Metagenome Family F088403

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F088403
Family Type	Metagenome
Number of Sequences	109
Average Sequence Length	68 residues
Representative Sequence	VHIDPLPVALRLWQHTRLNGDELAPSEGITPSHAAQKLDISVQDRAGTNADARADVEGAVSKDADPLASG
Number of Associated Samples	70
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	3.67 %
% of genes near scaffold ends (potentially truncated)	96.33 %
% of genes from short scaffolds (< 2000 bps)	96.33 %
Associated GOLD sequencing projects	64
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.25

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (75.229 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (29.358 % of family members)
Environment Ontology (ENVO)	Unclassified (55.046 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (66.055 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 47.96% β-sheet: 0.00% Coil/Unstructured: 52.04%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.25
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.25
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF00486	Trans_reg_C	2.75
PF03721	UDPG_MGDP_dh_N	2.75
PF16976	RcpC	2.75
PF13586	DDE_Tnp_1_2	0.92
PF00535	Glycos_transf_2	0.92
PF06823	DUF1236	0.92
PF13807	GNVR	0.92
PF02371	Transposase_20	0.92
PF03237	Terminase_6N	0.92
PF14559	TPR_19	0.92
PF01527	HTH_Tnp_1	0.92
PF02538	Hydantoinase_B	0.92
PF13493	DUF4118	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG0240	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	2.75
COG0677	UDP-N-acetyl-D-mannosaminuronate dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	2.75
COG1004	UDP-glucose 6-dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	2.75
COG1250	3-hydroxyacyl-CoA dehydrogenase	Lipid transport and metabolism [I]	2.75
COG1893	Ketopantoate reductase	Coenzyme transport and metabolism [H]	2.75
COG0146	N-methylhydantoinase B/oxoprolinase/acetone carboxylase, alpha subunit	Amino acid transport and metabolism [E]	1.83
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	76.15 %
Unclassified	root	N/A	23.85 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	76.15 %
Unclassified	root	N/A	23.85 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	75.23 %
Unclassified	root	N/A	23.85 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.92 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	62.39 %
Unclassified	root	N/A	23.85 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.92 %
Opisthokonta	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta	0.92 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	57.80 %
Unclassified	root	N/A	23.85 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.92 %
Metazoa	kingdom	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	23.85 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	14.68 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	3.67 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.92 %
Eumetazoa	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	23.85 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	12.84 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.67 %
unclassified Bryobacterales	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales	0.92 %
Bilateria	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	23.85 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	11.01 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.67 %
Protostomia	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia	0.92 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	23.85 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	11.01 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.67 %
Ecdysozoa	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa	0.92 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	23.85 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	11.01 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.67 %
Nematoda	phylum	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda	0.92 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	23.85 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	11.01 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.67 %
Chromadorea	class	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea	0.92 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	23.85 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	11.01 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.67 %
Rhabditida	order	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida	0.92 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_102493814	Not Available	579	Open in IMG/M
3300000956\|JGI10216J12902_115683821	Not Available	528	Open in IMG/M
3300004633\|Ga0066395_10360427	Not Available	810	Open in IMG/M
3300004633\|Ga0066395_10790239	Not Available	569	Open in IMG/M
3300005180\|Ga0066685_10385917	Not Available	973	Open in IMG/M
3300005332\|Ga0066388_104624793	All Organisms → cellular organisms → Bacteria	700	Open in IMG/M
3300005332\|Ga0066388_107049274	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	565	Open in IMG/M
3300005713\|Ga0066905_100227853	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1415	Open in IMG/M
3300005713\|Ga0066905_101794741	Not Available	566	Open in IMG/M
3300005764\|Ga0066903_100654372	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1838	Open in IMG/M
3300005764\|Ga0066903_102947933	All Organisms → cellular organisms → Bacteria	922	Open in IMG/M
3300005764\|Ga0066903_103229333	All Organisms → cellular organisms → Bacteria	881	Open in IMG/M
3300005764\|Ga0066903_103693993	All Organisms → cellular organisms → Bacteria → Proteobacteria	823	Open in IMG/M
3300005764\|Ga0066903_105721521	All Organisms → cellular organisms → Bacteria → Proteobacteria	653	Open in IMG/M
3300005764\|Ga0066903_107164914	All Organisms → cellular organisms → Bacteria	577	Open in IMG/M
3300005764\|Ga0066903_107301332	All Organisms → cellular organisms → Bacteria	571	Open in IMG/M
3300006028\|Ga0070717_12113245	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	507	Open in IMG/M
3300006049\|Ga0075417_10282277	All Organisms → cellular organisms → Bacteria → Proteobacteria	802	Open in IMG/M
3300006880\|Ga0075429_101496748	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	587	Open in IMG/M
3300007258\|Ga0099793_10565313	Not Available	568	Open in IMG/M
3300009012\|Ga0066710_101585379	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1004	Open in IMG/M
3300010043\|Ga0126380_11482910	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	600	Open in IMG/M
3300010046\|Ga0126384_10541917	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1010	Open in IMG/M
3300010046\|Ga0126384_11260334	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	684	Open in IMG/M
3300010046\|Ga0126384_11585354	All Organisms → cellular organisms → Bacteria	616	Open in IMG/M
3300010046\|Ga0126384_11829827	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	577	Open in IMG/M
3300010046\|Ga0126384_11866251	Not Available	572	Open in IMG/M
3300010048\|Ga0126373_12804246	Not Available	544	Open in IMG/M
3300010359\|Ga0126376_10946199	All Organisms → cellular organisms → Bacteria	856	Open in IMG/M
3300010359\|Ga0126376_12928991	All Organisms → cellular organisms → Bacteria	527	Open in IMG/M
3300010361\|Ga0126378_11449719	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	778	Open in IMG/M
3300010361\|Ga0126378_12407641	Not Available	601	Open in IMG/M
3300010366\|Ga0126379_10048907	All Organisms → cellular organisms → Bacteria	3467	Open in IMG/M
3300010366\|Ga0126379_13605682	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	519	Open in IMG/M
3300010376\|Ga0126381_101831410	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	876	Open in IMG/M
3300010398\|Ga0126383_10572865	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1197	Open in IMG/M
3300010398\|Ga0126383_11325331	All Organisms → cellular organisms → Bacteria	810	Open in IMG/M
3300010398\|Ga0126383_13007164	Not Available	551	Open in IMG/M
3300012202\|Ga0137363_11120292	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	669	Open in IMG/M
3300012211\|Ga0137377_11081724	Not Available	732	Open in IMG/M
3300012582\|Ga0137358_10127275	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1732	Open in IMG/M
3300012948\|Ga0126375_11292203	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	612	Open in IMG/M
3300012971\|Ga0126369_10724818	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1073	Open in IMG/M
3300012975\|Ga0134110_10438757	Not Available	585	Open in IMG/M
3300016270\|Ga0182036_11695482	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	533	Open in IMG/M
3300016294\|Ga0182041_10633830	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	942	Open in IMG/M
3300016294\|Ga0182041_11240851	All Organisms → cellular organisms → Bacteria	681	Open in IMG/M
3300016319\|Ga0182033_10728254	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	870	Open in IMG/M
3300016341\|Ga0182035_11353415	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	638	Open in IMG/M
3300016341\|Ga0182035_11666284	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	576	Open in IMG/M
3300016341\|Ga0182035_11705534	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	569	Open in IMG/M
3300016371\|Ga0182034_10120877	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1918	Open in IMG/M
3300016371\|Ga0182034_10652546	Not Available	892	Open in IMG/M
3300016387\|Ga0182040_11022918	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	690	Open in IMG/M
3300016387\|Ga0182040_11509322	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	571	Open in IMG/M
3300016387\|Ga0182040_11903950	Not Available	510	Open in IMG/M
3300016422\|Ga0182039_10190536	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1627	Open in IMG/M
3300016445\|Ga0182038_10592272	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	956	Open in IMG/M
3300016445\|Ga0182038_11455497	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	614	Open in IMG/M
3300018431\|Ga0066655_10168285	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida	1321	Open in IMG/M
3300018468\|Ga0066662_11682702	All Organisms → cellular organisms → Bacteria → Proteobacteria	663	Open in IMG/M
3300021560\|Ga0126371_13493238	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	530	Open in IMG/M
3300025910\|Ga0207684_10032453	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4440	Open in IMG/M
3300025915\|Ga0207693_10713539	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	776	Open in IMG/M
3300031572\|Ga0318515_10735324	Not Available	521	Open in IMG/M
3300031573\|Ga0310915_10906583	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	617	Open in IMG/M
3300031680\|Ga0318574_10961455	Not Available	500	Open in IMG/M
3300031682\|Ga0318560_10284947	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	889	Open in IMG/M
3300031682\|Ga0318560_10408275	Not Available	735	Open in IMG/M
3300031719\|Ga0306917_11015537	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	647	Open in IMG/M
3300031748\|Ga0318492_10084405	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1541	Open in IMG/M
3300031768\|Ga0318509_10384325	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	785	Open in IMG/M
3300031770\|Ga0318521_10599829	Not Available	666	Open in IMG/M
3300031771\|Ga0318546_10528456	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	828	Open in IMG/M
3300031782\|Ga0318552_10621160	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	551	Open in IMG/M
3300031792\|Ga0318529_10538410	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	542	Open in IMG/M
3300031794\|Ga0318503_10159745	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	728	Open in IMG/M
3300031798\|Ga0318523_10259451	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	868	Open in IMG/M
3300031798\|Ga0318523_10380271	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	702	Open in IMG/M
3300031821\|Ga0318567_10887556	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	505	Open in IMG/M
3300031833\|Ga0310917_10687493	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	693	Open in IMG/M
3300031835\|Ga0318517_10446919	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	583	Open in IMG/M
3300031879\|Ga0306919_10008251	All Organisms → cellular organisms → Bacteria → Proteobacteria	5736	Open in IMG/M
3300031879\|Ga0306919_10420713	Not Available	1026	Open in IMG/M
3300031890\|Ga0306925_10433555	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1406	Open in IMG/M
3300031896\|Ga0318551_10271459	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	950	Open in IMG/M
3300031910\|Ga0306923_10671302	Not Available	1156	Open in IMG/M
3300031910\|Ga0306923_10916920	Not Available	958	Open in IMG/M
3300031910\|Ga0306923_11277773	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	780	Open in IMG/M
3300031910\|Ga0306923_11445085	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	722	Open in IMG/M
3300031912\|Ga0306921_10564964	All Organisms → cellular organisms → Bacteria	1318	Open in IMG/M
3300031912\|Ga0306921_10609322	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1262	Open in IMG/M
3300031912\|Ga0306921_10761549	Not Available	1108	Open in IMG/M
3300031912\|Ga0306921_11339126	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	790	Open in IMG/M
3300031942\|Ga0310916_10707114	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	852	Open in IMG/M
3300031942\|Ga0310916_11582604	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	532	Open in IMG/M
3300031946\|Ga0310910_10899161	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	695	Open in IMG/M
3300031947\|Ga0310909_10104447	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2282	Open in IMG/M
3300032001\|Ga0306922_10542786	Not Available	1236	Open in IMG/M
3300032001\|Ga0306922_10559910	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1214	Open in IMG/M
3300032001\|Ga0306922_11197473	Not Available	773	Open in IMG/M
3300032051\|Ga0318532_10128992	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	896	Open in IMG/M
3300032051\|Ga0318532_10312833	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	557	Open in IMG/M
3300032065\|Ga0318513_10425852	Not Available	648	Open in IMG/M
3300032066\|Ga0318514_10176352	All Organisms → cellular organisms → Bacteria	1115	Open in IMG/M
3300032076\|Ga0306924_12423988	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	528	Open in IMG/M
3300032090\|Ga0318518_10114434	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1355	Open in IMG/M
3300032261\|Ga0306920_101293690	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1049	Open in IMG/M
3300033289\|Ga0310914_11812534	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	514	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.17%
Host-Associated	Host-Associated	1.83%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	98.17%
Plants	Host-Associated → Plants	1.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	98.17%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	83.49%
Loam	Environmental → Terrestrial → Soil → Loam	14.68%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.83%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	55.05%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	22.94%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	11.93%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.50%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.75%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	29.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	25.69%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	18.35%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	11.93%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.75%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.75%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.75%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.83%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012975	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031794	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1024938142	3300000956	Soil	VALKLWQHTRPNGDELTPSEGIAPSQTAQKLDISIQDRAGTNNDTRAAAESAVSKDVDPLATDRTR*
JGI10216J12902_1156838211	3300000956	Soil	PLPVALRLWQHTRLNGDEFAASEGGMPSQAAQKLDMSVQDRTGTHNDTRAESAISKDADPAASG*
Ga0066395_103604272	3300004633	Tropical Forest Soil	ALRLWQHTRLNGDGLAPSENITSSQVAQKRDTSVRDPADTNDEARANVEGAVSNDGDPLSSR*
Ga0066395_107902392	3300004633	Tropical Forest Soil	ALRLWQHTRLNNGELAPTSEGITPSQAAQKLDMSVQGRAGTNDDARADVEGAVSKDADPLASG*
Ga0066685_103859172	3300005180	Soil	DPLPVALRLWQHTRLNGNELAPSEGITPSQAAQKPDMSVQGRAGTNDDVRADAESAVSNDAVPRKSG*
Ga0066388_1046247932	3300005332	Tropical Forest Soil	ALRLWQHTRLTGDGLAQNITPSQAAQELDISVQDRAGTNDDARADVKSTVSKGVD*
Ga0066388_1070492742	3300005332	Tropical Forest Soil	WWQKLNIDPLPVALRLWQHTRLNGDEFAASGGGTPSQAAQKLDMSVQDRTGTHNDTRAESAISKDADPAASG*
Ga0066905_1002278531	3300005713	Tropical Forest Soil	LHRQGDEAAWWGKIHIDPLPVALRLWQHTRLNNNELAPTSEGITPSQAAQKLDMSVQGQAGTNDDARADVEGAVSKDADPFASG*
Ga0066905_1017947411	3300005713	Tropical Forest Soil	KIHIDPLPVALRLWQHTRLNNGELAPTSEGITPSQAAQKLSMSVQGRAGTNDDARADVEGAVSKDADPFASG*
Ga0066903_1006543721	3300005764	Tropical Forest Soil	EAAWWQKLNIDPLPVALRLWQHTRLTGDGLAPSENITPSHAAQELDMSVQDRAGTNDEARADVESAVSKGVD*
Ga0066903_1029479331	3300005764	Tropical Forest Soil	VALRLWQHTRLNGDGLSSSENITPSPAAQELDMSVDRAGTNDEACAVESAVSKGGIRT*
Ga0066903_1032293331	3300005764	Tropical Forest Soil	LWQHTRLNNDELAPTSEGITPSQAAQKLSMSVQGQAGTNDDARADVEGAVSKDADPLASG
Ga0066903_1036939931	3300005764	Tropical Forest Soil	EAAWWDKVHIDPLPVALRLWQHTRLNGDGLAPSEGITSSETAQKLDMSVQDRAGTNDEARADVESAVLKDAIRT*
Ga0066903_1057215212	3300005764	Tropical Forest Soil	PVALRLWQHTRLTGDGLAPSENITPSQAAQELDISVQDRVGTNDEARADVESAVSKGVD*
Ga0066903_1071649141	3300005764	Tropical Forest Soil	WQHTRLTGDGLAPSENITPSQAAQELDISVQDRAGTNDEAGADVQSAVSKGRVN*
Ga0066903_1073013321	3300005764	Tropical Forest Soil	PVALKLWQHTRLNGDGLAPSENITSSQVAQKRDTSVQNPAGTNDGARADVEGAVSKDPDPLASRCRR*
Ga0070717_121132452	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	QKLNIDPLPVALMLWQHTRLIGGELAQNGDITSSQALQKLDMPIQDRAGTHNDARAESAISKDADSAASGWPRFDRSRLI*
Ga0075417_102822771	3300006049	Populus Rhizosphere	RLWQHTRLNGDELSPTSEGITPSQAAQKLDMSVQDRAGTNDDPRANVESAVSKEADPLASG*
Ga0075429_1014967481	3300006880	Populus Rhizosphere	VALRLWQHTRLNGDELSPTSEGITPSQAAQKLDMSVQDRAGTNDDPRANVESAVSKEADPLASG*
Ga0099793_105653132	3300007258	Vadose Zone Soil	WQHTRLNNDELAPTSEAIAPSQAAQKLDMSVQDRAGTNVDARADGESTVSKDADPLASG*
Ga0066710_1015853791	3300009012	Grasslands Soil	DPLPVALRLWQHTRLNGDGLAPSENITSSQAARKRDTSVQNLASTNDGARADVEGAVSKDADPLASE
Ga0126380_114829102	3300010043	Tropical Forest Soil	GDEATWWGKVHIDPLPVALRLWQHTRLNGDGLAPSEGTTPSQATQKLEMSVQGQTGTNDEARADLEGAVSKDADPLAGG*
Ga0126384_105419171	3300010046	Tropical Forest Soil	GDEAAWWDKVHIDPLPVALRLWQHTRLNGDELAPSGGSTPSHAAQKLDISVQGRAGTNADARADEGAVSKDADPLASG*
Ga0126384_112603341	3300010046	Tropical Forest Soil	WWQKLNIDPLPVALRLWQHTRLNGDELAPSEGIAPSQAAQKLDMSVQDRTGTNDEARAHVEGAVSKDADPAASG*
Ga0126384_115853542	3300010046	Tropical Forest Soil	PVALKLWQHTRLNGDGLAPSENITSSQVAQKRDTSVQNPAGTNDGARADVEGAVSKDPDPLASR*
Ga0126384_118298271	3300010046	Tropical Forest Soil	HRSGDEAAWWQKLNIDPLPVALKLWQHTRLNGDGLAPSENITSSQVAQKRDTSVQNPAGTNDGARADVEGAVSKDADPLASR*
Ga0126384_118662511	3300010046	Tropical Forest Soil	TRLNGDEFAASGGGTPSQAAQKLDMSVQDRAGTHNDTRAESAISKDADPAASG*
Ga0126373_128042462	3300010048	Tropical Forest Soil	RLWQHTRLNNDELAPTSEGITPSQAAQKLSMSVQGQAGTNDDARADVEGAVSKDADPPASGWPRVQTD*
Ga0126376_109461991	3300010359	Tropical Forest Soil	KLWQHTRLNGDGLAPSENITSSQVAQKRDTSVQNPAGTNHGAGADVEGAVSKDPDPLASR
Ga0126376_129289911	3300010359	Tropical Forest Soil	LKLWQHTRLNGDEIAASEGGTPSQAAQKLDMSAQDRASTNDDQRTVVDSAASKDADPIASG*
Ga0126378_114497191	3300010361	Tropical Forest Soil	RELHRSGDEAAWWQKLNIDPLPVALRLWQHTRLNGGELAQNGDITSSQAPQKLDMSVQDRTGTNDEARADVEGAVSKDADPAASG*
Ga0126378_124076411	3300010361	Tropical Forest Soil	DELARNGDITSSQAAQKLDMSVQDRTGTHNDTRAESAISKDAEPAASG*
Ga0126379_100489075	3300010366	Tropical Forest Soil	GKIHIDPLPVALRLWQHTRLNNDELAPTGEGITPSQAAQKLDMSVQGRVGTNDDARAGVEGAVSKDGIRK*
Ga0126379_136056821	3300010366	Tropical Forest Soil	KVHIDPLPVALRLWQHTRLNGDELAPSEGFTPSHAAQKLDISVQGRAGTYADARADEGAVSKDADPLASG*
Ga0126381_1018314103	3300010376	Tropical Forest Soil	FSIDPLPVALRLWQHTRLNGNELAPSENITPSQAAQNLDMSVQDRAGTNDQARADVEGAVFKDGRRA*
Ga0126383_105728651	3300010398	Tropical Forest Soil	LNIDPLPVALRLWQHTRLNGDELARNGDITSSQAPQKLDMSVQDRTGTNDEARADVEGAVSKGADPAASG*
Ga0126383_113253312	3300010398	Tropical Forest Soil	GDEAAWWGKIHIDPLPVALRLWQHTRLNNDELAPTSEGITPSQAAQKLSMSVQGRAGTNDDARADVEGAVSKDADPLASG*
Ga0126383_130071641	3300010398	Tropical Forest Soil	QHTRLNGDELAQSGDITSSQAPQKLDRSVQGRAGTNNDARAESAVSKDADPAASG*
Ga0137363_111202922	3300012202	Vadose Zone Soil	IDPVPVALKLWQHTRPNGDELATSEGIAPSQAAQKRDISIQDRAGTNNDTRADAESARIFRASKAN*
Ga0137377_110817241	3300012211	Vadose Zone Soil	ALRLWQHTRLNGDEFAASGGGTPSQAAQKLDMSVQDRTGTHNDTRAESAISKDADPAASR
Ga0137358_101272753	3300012582	Vadose Zone Soil	ALRLWQHTRLNNDELAPTSEGITPSQPTKTTDMSVQDRAGTNDDAPADVAGAGSKDADPLATHDLVSTDRG*
Ga0126375_112922031	3300012948	Tropical Forest Soil	LWQRLNIDPLPVALRLWQHTRLNNNELAPTSEGITPSQAAQKLDMSVQDRAGTNDEARADVESAVFKDGIRT*
Ga0126369_107248181	3300012971	Tropical Forest Soil	GDEAAWWDKVHIDPLPVALRLWQHTRLNGDELAPSGGSTPSHAAQKLDISVQDRAGTNEDARADVEGAVSKDADPLASG*
Ga0134110_104387571	3300012975	Grasslands Soil	LRLWQHTRLNGNELAPSEGITPSQAAQKPDMSVQGRAGTNDDVRADAESAVSNDAVPRKSG*
Ga0182036_116954821	3300016270	Soil	AWWQKLNIDPLPVALRLWQHTRLNGDELAQSGDITSSQAPQKLDMSVQDRAGTNNDARAESAVSKDADPAGSG
Ga0182041_106338302	3300016294	Soil	RLWQHTRLNGDEFAASGGGTPSQAAQKLDMSVQDRTGTHNETRAESAISKDADPAASG
Ga0182041_112408512	3300016294	Soil	WWQKLNIDPLPVALKLWQHTRLNGDELAPSENITSSQVAQKRDTSVQNPAGTNDGAHADVEGAVSKDPDPLASR
Ga0182033_107282543	3300016319	Soil	VHIDPLPVALRLWQHTRLNGDELAPSEGITPSHAAQKLDISVQDRAGTNADARADVEGAVSKDADPLASG
Ga0182035_113534152	3300016341	Soil	ELHREGDEVAWWGKFSIDLLPVALRLWQHTRLNGNELAPSENITLSQAAQNPSVQDRAGTNDERADASAVFKDGIRT
Ga0182035_116662841	3300016341	Soil	KVHIDPLPVALRLWQHTRLNGDELAPSENITPSQTAQNLDMSVQDRAGTNDEARADVESAVFKNGIRT
Ga0182035_117055341	3300016341	Soil	TWWGKVHIDPLPVALRLWQHTRLNGDGLAPSEGTTPSQAAQKLEMSVQGQTGTNDEARADVGSAVPKDVDPIASG
Ga0182034_101208771	3300016371	Soil	SIDPLPVALRLWQHTRLNGNELAPSENITPSQTAQDLDMSVQDRACTNDEARADVESAVFKDGIRT
Ga0182034_106525462	3300016371	Soil	LWQHTRLNGDEFAASGGGTPSQAAQKLDMSVQDRTGTHNDTRAESAISKDADPVAKG
Ga0182040_110229181	3300016387	Soil	WWQKLNIDPLPVALRLWQQTRLNGDAPAPSEDITPSRAAQKPGTSVQDRADTNDEARADVESAVFKNGIRT
Ga0182040_115093221	3300016387	Soil	KVHIDPLPVALRLWQHTRLNGDELAPSEGITPSHAAQKLDISVQGRAGTNADARADEGAVSKGADPLASG
Ga0182040_119039502	3300016387	Soil	RFNNDELAPTSEGITPSQDAQKLDMSVQGRAGTNDDARADVKSTVSKGVD
Ga0182039_101905364	3300016422	Soil	LRLWQHTRLNGDELAQSGDITSSQAPQKLDMSVQDRAGTNNDARAESAVSKDADPAGSG
Ga0182038_105922722	3300016445	Soil	WQHTRFNNDELAPTSKGITPSQDAQKLDMSVQGRAGTNDDARAYVEGAVSKDADPLASG
Ga0182038_114554971	3300016445	Soil	KFSIDPLPVALRLWQHTRLNGNELAPSENITPSQTAQDLDMSVQDRACTNDEARADVESAVFKDGIRT
Ga0066655_101682852	3300018431	Grasslands Soil	QHTRLNGNELAPSEGITPSQAAQKPDMSVQGRAGTNDDVRADAESAVSNDAVPRKSG
Ga0066662_116827021	3300018468	Grasslands Soil	IDPLPVALRLWQHTRLNGNELAPSEGITPSQAAQKPDMSVQGRAGTNDDVRADAESAVSNDAVPRKSG
Ga0126371_134932382	3300021560	Tropical Forest Soil	WWGKVHIDPLPVALRLWQHTRFNNNELAATGVTPSQAAQKSDMSVQDQARTNDDAHASSESPNDGESDAGK
Ga0207684_100324531	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	HIDPIPVALRLWQHTRLNNDELAPTSEGIAPSQAAQKLDMSVQGRAGTNDDARADVEGAVSKDADPLTSG
Ga0207693_107135392	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	KLSIDPLPVALRLWQHTRLYGDGLAPSGGSTPSQAPQKLDMSVQDRAGTNDEARADVESAVFKDGIRT
Ga0318515_107353241	3300031572	Soil	RLWQHTRLNGDEFAASGGGTPSQAAQKLDMSVQDRTGTHNDTRAESAISKDADPAASG
Ga0310915_109065831	3300031573	Soil	IDPLPVALRLWQHTRLNGNELAPSENITPSQTAQDLDMSVQDRACTNDEARADVESAVFKDGIRT
Ga0318574_109614551	3300031680	Soil	LWQHTRLNGDGLAPSENITSSQVAQKRDTSVQNPAGTNDGAHADVEGAVSKDPDPLASR
Ga0318560_102849471	3300031682	Soil	HRQGDEAAWWDKVHIDPLPVALRLWQHTRLNGDELAPSGGSTPSHAAQKLDISVQDRAGTNADARADVEGAVSKDADPLASG
Ga0318560_104082751	3300031682	Soil	LWQHTRLNGDGLAPSENITSSQVARKRDTSVQNPAGTNDGARADVEGAVSKDPDPLASR
Ga0306917_110155372	3300031719	Soil	QGDEAAWWDKVHIDPLPVALRLWQHTRLNGDELAPSEGITPSHAAQKLDISVQGRAGTNADARADEGAVSKGADPLASG
Ga0318492_100844053	3300031748	Soil	ALRLWQHTRLNGDELAPSGGSTPSHAAQKLDISVQDRAGTNEDARADVEGAVSKDADPLASG
Ga0318509_103843251	3300031768	Soil	LNIDPLPVALRLWQHTRRNGDELAASGSGTPSQAAQKLDMSVQDRTGTHNDTRAESAISKDADPVAKG
Ga0318521_105998292	3300031770	Soil	LRLWQHTRLNNDELAPTSEGITPSQAAQKLSMSVQGQAGTNDGARADVEGAVSKDADPLASG
Ga0318546_105284561	3300031771	Soil	QKLNIDPLPVALKLWQHTRLNGDGHAPSENITPSQVAQKRDTSVQNPAGTNDGARADVEGAVSNDGDPLTSR
Ga0318552_106211601	3300031782	Soil	LHRQGDEAAWWDKVHIDPLPVALRLWQHTRLNGDELAPSGGSTPSHAAQKLDISVQDRAGTNADARADVEGAVSKDADPLASG
Ga0318529_105384102	3300031792	Soil	LNIDPLPVALRLWQHTRLNGDEFAASGGGTPSQAAQKLDMSVQDRTGTHNDTRAESAISKDADPAASG
Ga0318503_101597451	3300031794	Soil	ALRLWQHTRLNGDELAPSGGSTPSHAAQKLDISVQDRAGTNADARADVEGAVSKDADPLASG
Ga0318523_102594511	3300031798	Soil	VHIDPLPVALRLWQHTRLNGDELAPSGGSTPSHAAQKLDISVQDRAGTNADARADVEGAVSKDADPLASG
Ga0318523_103802712	3300031798	Soil	ADEAAWWDKVHIDPLPVALRLWQHTRLNGDELAPSEGITPSHAAQKLDISVQGRAGTNADARADEGAVSKGADPLASG
Ga0318567_108875561	3300031821	Soil	VTWWGKVHIDPLPVALRLWQHTRLNGDGLAPSEGTTPSQAAQKLEMSVQGQTGTNDEARADVEGAVSRDADPLASG
Ga0310917_106874931	3300031833	Soil	HRSGDEATWWQKLNIDPLPVALRLWQQTRLNGDAPAPSEDITPSRAAQKPGTSVQDRADTNDEARADVESAVFKNGIRT
Ga0318517_104469191	3300031835	Soil	WQKLNIDPLPVALKLWQHTRLNGDGLAPSENITSSQVAQKRDTSVQNPAGTNDGAHADVEGAVSKDPDPLASR
Ga0306919_100082511	3300031879	Soil	SGDEAAWWQKLNIDPLPVALKLWQHTRLNGDGHAPSENITPSQVAQKRDTSVQNPAGTNDGARADVEGAVSNDGDPLTSR
Ga0306919_104207131	3300031879	Soil	VALRLWQHTRLNGNELAPSENITPSQTAQDLDMSVQDRACTNDEARADVESAVFKDGIRT
Ga0306925_104335551	3300031890	Soil	VALRLWQHTRLNGNEPASSENITPSQAAQELDMSVDRAGTNDEARADVESAVSKGID
Ga0318551_102714592	3300031896	Soil	RQGDEAAWWDKVHIDPLPVALRLWQHTRLNGDELAPSGGSTPSHAAQKLDISVQDRAGTNADARADVEGAVSKDADPLASG
Ga0306923_106713023	3300031910	Soil	ALRLWQHTRLNGNELAPSENITPSQTAQDLDMSVQDRACTNDEARADVESAVFKDGIRT
Ga0306923_109169201	3300031910	Soil	LPVALRLWQHTRHNGDEFAASGSGTPSQAAQKLDMSVQDRTGTHDDTRAESAISKDADPAASG
Ga0306923_112777732	3300031910	Soil	LWQRLNIDPLPVALRLWQHTRLNGDELAPSENITPSQAAQKLDMSVQDRAGTNDEARADVESAVFKNGIRT
Ga0306923_114450852	3300031910	Soil	VKGFHTHARKFNIDPLPVALRLWQHTRLNGNEPASSENITPSQAAQELDMSVDRAGTNDEARADVESAVSKGID
Ga0306921_105649644	3300031912	Soil	FSIDPLPVALRLWQHTRLNGNELAPSENITPSQAAQKLDMSVQDRAGTNDEAHADVESAVFKDGIRT
Ga0306921_106093221	3300031912	Soil	WQKLNIDPLPVALRLWQHTRLNGDELAQSGDITSSQAPQKLDMSVQDRAGTNNDARAESAVSKDADPAGSG
Ga0306921_107615491	3300031912	Soil	VALRLWQHTRLNGDELAPSGGSTPSHAAQKLDISVQDRAGTNEDARADVEGAVSKDADPLASG
Ga0306921_113391262	3300031912	Soil	LWQRLNIDPLPVALRLWQHTRLNGDELAPSENITPSQTAQNLDMSVQDRAGTNDEARADVESAVFKDGIRT
Ga0310916_107071141	3300031942	Soil	GDEVAWWGKFSIDPLPVALRLWQHTRLNGNELAPSENITPSQAAQKLDMSVQDRAGTNDEAHADVESAVFKDGIRT
Ga0310916_115826041	3300031942	Soil	DPLPVALKLWQHTRLNGDGLAPSENITSSQVARKRDTSVQNPAGTNDGARADVEGAVSKDPDPLASR
Ga0310910_108991612	3300031946	Soil	ELHRQADEAAWWDKVHIDPLPVALRLWQHTRLNGDELAPSEGITPSHAAQKLDISVQGRAGTNADARADEGAVSKGADPLASG
Ga0310909_101044471	3300031947	Soil	LPVALRLWQHTRLNGNELAPSENITPSQTAQDLDMSVQDRACTNDEARADVESAVFKDGIRT
Ga0306922_105427864	3300032001	Soil	VALRLWQHTRLNGDELAPSGGSTPSHAAQKLDISVQDRAGTNADARADVEGAVSKDADPLASG
Ga0306922_105599103	3300032001	Soil	VALRLWQHTRLNGDELAPSGGSTPSHAAQKLDISVQDRAGTNEDARADVEGAVSKDADPLASR
Ga0306922_111974731	3300032001	Soil	RLWQHTRLNGDEFAASGGGTPSQAAQKLDMSVQDRTGTHNDTRAESAISKDADPVAKG
Ga0318532_101289922	3300032051	Soil	SGDEAGWWQKLNIDPLPVALRLWQHTRLNGDEFAASGGGTPSQAAQKLDMSVQDRTGTHNDTRAESAISKDADPAASG
Ga0318532_103128332	3300032051	Soil	EAAWWQKLNIDPLPVALRLWQHTRLNGDELAQSGDITSSQAPQKLDMSVQDRAGTNNDARAESAVSKDADPAGSG
Ga0318513_104258521	3300032065	Soil	LWQHTRLNGDGHAPSENITPSQVAQKRDTSVQNPAGTNDGARADVEGAVSNDGDPLTSR
Ga0318514_101763522	3300032066	Soil	LWQHTRLNGDGLAPSENITSSQVAQKRDTSVQNPAGTNDGARADVEGAVSNDGDPLTSR
Ga0306924_124239881	3300032076	Soil	LWQRLNIDPLPVALRLWQHTRLNGDELAPSENITPSQAAQKQDRAGTNDEARADVE
Ga0318518_101144341	3300032090	Soil	GDEAAWWDKVHIDPLPVALRLWQHTRLNGDELAPSGGSTPSHAAQKLDISVQDRAGTNEDARADVEGAVSKDADPLASG
Ga0306920_1012936901	3300032261	Soil	VALRLWQHTRLNGDELAPSEGITPSHAAQKLDISVQGRAGTNADARADEGAVSKGADPLASG
Ga0310914_118125341	3300033289	Soil	HRELHRQGDEATWWGKVHIDPLPVALRLWQHTRLNGDGLAPSEGTTPSQAAQKLEMSVQGQTGTNDEARADVGSAVPKDVDPIASG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F088403

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences