Metagenome / Metatranscriptome Family F088423

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F088423
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	92 residues
Representative Sequence	MIESPLIREITAERSHKHILRLLATRFGPVPPELEAEVKSILDESVLDAVIELAAFSPDLDHFGAALRAVPRPPEPWDPADEPEPKA
Number of Associated Samples	80
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	39.45 %
% of genes near scaffold ends (potentially truncated)	57.80 %
% of genes from short scaffolds (< 2000 bps)	88.99 %
Associated GOLD sequencing projects	66
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.64

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (69.725 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil (58.716 % of family members)
Environment Ontology (ENVO)	Unclassified (71.560 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (78.899 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 49.57% β-sheet: 0.00% Coil/Unstructured: 50.43%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.64
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.64
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF05685	Uma2	5.50
PF00988	CPSase_sm_chain	2.75
PF01078	Mg_chelatase	2.75
PF11412	DsbC	1.83
PF01609	DDE_Tnp_1	1.83
PF05016	ParE_toxin	1.83
PF01613	Flavin_Reduct	1.83
PF01769	MgtE	0.92
PF13541	ChlI	0.92
PF01381	HTH_3	0.92
PF14690	zf-ISL3	0.92
PF13546	DDE_5	0.92
PF03787	RAMPs	0.92
PF01812	5-FTHF_cyc-lig	0.92
PF13560	HTH_31	0.92
PF13646	HEAT_2	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG0505	Carbamoylphosphate synthase small subunit	Amino acid transport and metabolism [E]	5.50
COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	General function prediction only [R]	5.50
COG1853	FMN reductase RutF, DIM6/NTAB family	Energy production and conversion [C]	1.83
COG3039	Transposase and inactivated derivatives, IS5 family	Mobilome: prophages, transposons [X]	1.83
COG3293	Transposase	Mobilome: prophages, transposons [X]	1.83
COG3385	IS4 transposase InsG	Mobilome: prophages, transposons [X]	1.83
COG5421	Transposase	Mobilome: prophages, transposons [X]	1.83
COG5433	Predicted transposase YbfD/YdcC associated with H repeats	Mobilome: prophages, transposons [X]	1.83
COG5659	SRSO17 transposase	Mobilome: prophages, transposons [X]	1.83
COG0212	5-formyltetrahydrofolate cyclo-ligase	Coenzyme transport and metabolism [H]	0.92
COG1332	CRISPR-Cas system type III CSM-effector complex subunit Csm5, RAMP superfamily Cas7 group	Defense mechanisms [V]	0.92
COG1336	CRISPR-Cas system type III CMR-effector complex subunit Cmr4, RAMP superfamily Cas7 group	Defense mechanisms [V]	0.92
COG1337	CRISPR-Cas system type III CSM-effector complex subunit Csm3, RAMP superfamily Cas7 group	Defense mechanisms [V]	0.92
COG1367	CRISPR-Cas system type III CMR-effector complex subunit Cmr1, RAMP superfamily Cas7 group	Defense mechanisms [V]	0.92
COG1567	CRISPR-Cas system type III CSM-effector complex subunit Csm4, RAMP superfamily Cas5 group	Defense mechanisms [V]	0.92
COG1604	CRISPR/Cas system CMR subunit Cmr6, Cas7 group, RAMP superfamily	Defense mechanisms [V]	0.92
COG1824	Permease, similar to cation transporters	Inorganic ion transport and metabolism [P]	0.92
COG2239	Mg/Co/Ni transporter MgtE (contains CBS domain)	Inorganic ion transport and metabolism [P]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.72 %
All Organisms	root	All Organisms	30.28 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.72 %
cellular organisms	root	All Organisms → cellular organisms	30.28 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.72 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	30.28 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.72 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	17.43 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.72 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	16.51 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	1.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.72 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	15.60 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.72 %
Isosphaerales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Isosphaerales	11.01 %
Gloeobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Gloeobacteria	1.83 %
Gemmatales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales	0.92 %
Planctomycetales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.72 %
Isosphaeraceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Isosphaerales → Isosphaeraceae	11.01 %
Gloeobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Gloeobacteria → Gloeobacterales	1.83 %
Gemmataceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae	0.92 %
Planctomycetaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.72 %
Singulisphaera	genus	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Isosphaerales → Isosphaeraceae → Singulisphaera	6.42 %
Tautonia	genus	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Isosphaerales → Isosphaeraceae → Tautonia	2.75 %
Gloeobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Gloeobacteria → Gloeobacterales → Gloeobacteraceae	1.83 %
Planctomyces	genus	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Planctomyces	0.92 %
Zavarzinella	genus	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Zavarzinella	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.72 %
unclassified Singulisphaera	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Isosphaerales → Isosphaeraceae → Singulisphaera → unclassified Singulisphaera	3.67 %
Tautonia plasticadhaerens	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Isosphaerales → Isosphaeraceae → Tautonia → Tautonia plasticadhaerens	2.75 %
Singulisphaera acidiphila	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Isosphaerales → Isosphaeraceae → Singulisphaera → Singulisphaera acidiphila	2.75 %
Gloeobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Gloeobacteria → Gloeobacterales → Gloeobacteraceae → Gloeobacter	1.83 %
unclassified Planctomyces	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Planctomyces → unclassified Planctomyces	0.92 %
Zavarzinella formosa	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Zavarzinella → Zavarzinella formosa	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.72 %
Singulisphaera sp. GP187	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Isosphaerales → Isosphaeraceae → Singulisphaera → unclassified Singulisphaera → Singulisphaera sp. GP187	3.67 %
Tautonia plasticadhaerens	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Isosphaerales → Isosphaeraceae → Tautonia → Tautonia plasticadhaerens	2.75 %
Gloeobacter kilaueensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Gloeobacteria → Gloeobacterales → Gloeobacteraceae → Gloeobacter → Gloeobacter kilaueensis	1.83 %
Singulisphaera acidiphila DSM 18658	strain	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Isosphaerales → Isosphaeraceae → Singulisphaera → Singulisphaera acidiphila → Singulisphaera acidiphila DSM 18658	1.83 %
Planctomyces sp. SH-PL62	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Planctomyces → unclassified Planctomyces → Planctomyces sp. SH-PL62	0.92 %
Zavarzinella formosa	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Zavarzinella → Zavarzinella formosa	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003218\|JGI26339J46600_10006233	All Organisms → cellular organisms → Bacteria	3499	Open in IMG/M
3300003218\|JGI26339J46600_10059226	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	1005	Open in IMG/M
3300003297\|Ga0006818J48916_112013	All Organisms → cellular organisms → Bacteria	573	Open in IMG/M
3300004474\|Ga0068968_1494585	All Organisms → cellular organisms → Bacteria	1102	Open in IMG/M
3300004475\|Ga0068969_1048779	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Isosphaerales → Isosphaeraceae → Singulisphaera → unclassified Singulisphaera → Singulisphaera sp. GP187	777	Open in IMG/M
3300004475\|Ga0068969_1075062	All Organisms → cellular organisms → Bacteria	675	Open in IMG/M
3300004596\|Ga0068949_1256186	Not Available	510	Open in IMG/M
3300004599\|Ga0068933_1270791	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Gloeobacteria → Gloeobacterales → Gloeobacteraceae → Gloeobacter → Gloeobacter kilaueensis	551	Open in IMG/M
3300004600\|Ga0068964_1249394	Not Available	587	Open in IMG/M
3300004601\|Ga0068934_1280904	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Isosphaerales → Isosphaeraceae → Tautonia → Tautonia plasticadhaerens	541	Open in IMG/M
3300004602\|Ga0068960_1240092	Not Available	549	Open in IMG/M
3300004604\|Ga0068943_1309369	Not Available	504	Open in IMG/M
3300004608\|Ga0068924_1303307	Not Available	511	Open in IMG/M
3300004613\|Ga0068937_1240205	Not Available	500	Open in IMG/M
3300004616\|Ga0068930_1379564	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Gloeobacteria → Gloeobacterales → Gloeobacteraceae → Gloeobacter → Gloeobacter kilaueensis	506	Open in IMG/M
3300004616\|Ga0068930_1402476	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Isosphaerales → Isosphaeraceae → Tautonia → Tautonia plasticadhaerens	1003	Open in IMG/M
3300004618\|Ga0068963_1016322	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Zavarzinella → Zavarzinella formosa	549	Open in IMG/M
3300004973\|Ga0072322_1320275	Not Available	932	Open in IMG/M
3300005332\|Ga0066388_107435320	Not Available	550	Open in IMG/M
3300005764\|Ga0066903_104218286	Not Available	769	Open in IMG/M
3300005764\|Ga0066903_109081362	Not Available	503	Open in IMG/M
3300006860\|Ga0063829_1027786	Not Available	603	Open in IMG/M
3300006860\|Ga0063829_1449805	Not Available	545	Open in IMG/M
3300009521\|Ga0116222_1113524	Not Available	1166	Open in IMG/M
3300009521\|Ga0116222_1238612	Not Available	784	Open in IMG/M
3300009524\|Ga0116225_1362686	Not Available	645	Open in IMG/M
3300009630\|Ga0116114_1037271	Not Available	1406	Open in IMG/M
3300009630\|Ga0116114_1125591	Not Available	667	Open in IMG/M
3300009630\|Ga0116114_1149961	Not Available	596	Open in IMG/M
3300009672\|Ga0116215_1051209	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	1874	Open in IMG/M
3300009672\|Ga0116215_1286781	Not Available	717	Open in IMG/M
3300009672\|Ga0116215_1408340	Not Available	588	Open in IMG/M
3300009683\|Ga0116224_10020983	All Organisms → cellular organisms → Bacteria	3218	Open in IMG/M
3300009698\|Ga0116216_10225116	Not Available	1148	Open in IMG/M
3300009824\|Ga0116219_10023119	All Organisms → cellular organisms → Bacteria	3806	Open in IMG/M
3300009824\|Ga0116219_10190823	Not Available	1175	Open in IMG/M
3300010339\|Ga0074046_10357885	Not Available	888	Open in IMG/M
3300010339\|Ga0074046_10477541	Not Available	746	Open in IMG/M
3300010339\|Ga0074046_10529208	Not Available	702	Open in IMG/M
3300010339\|Ga0074046_10859399	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Isosphaerales → Isosphaeraceae	529	Open in IMG/M
3300010341\|Ga0074045_10024860	All Organisms → cellular organisms → Bacteria	4614	Open in IMG/M
3300010341\|Ga0074045_10867154	Not Available	570	Open in IMG/M
3300010343\|Ga0074044_11123158	Not Available	514	Open in IMG/M
3300010379\|Ga0136449_100127773	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	5077	Open in IMG/M
3300010379\|Ga0136449_100255625	All Organisms → cellular organisms → Bacteria	3249	Open in IMG/M
3300010379\|Ga0136449_100356961	All Organisms → cellular organisms → Bacteria	2623	Open in IMG/M
3300010379\|Ga0136449_101768132	Not Available	927	Open in IMG/M
3300010379\|Ga0136449_101786490	Not Available	921	Open in IMG/M
3300010379\|Ga0136449_102195064	Not Available	806	Open in IMG/M
3300010379\|Ga0136449_102725221	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Isosphaerales → Isosphaeraceae → Singulisphaera → Singulisphaera acidiphila → Singulisphaera acidiphila DSM 18658	701	Open in IMG/M
3300010379\|Ga0136449_103672497	Not Available	580	Open in IMG/M
3300011034\|Ga0138549_103782	Not Available	552	Open in IMG/M
3300011040\|Ga0138587_133039	Not Available	548	Open in IMG/M
3300011041\|Ga0138591_140290	Not Available	525	Open in IMG/M
3300011050\|Ga0138571_166898	Not Available	604	Open in IMG/M
3300011053\|Ga0138531_175496	Not Available	505	Open in IMG/M
3300011057\|Ga0138544_1100910	Not Available	500	Open in IMG/M
3300011058\|Ga0138541_1095935	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Isosphaerales → Isosphaeraceae → Tautonia → Tautonia plasticadhaerens	977	Open in IMG/M
3300011060\|Ga0138583_1024283	Not Available	573	Open in IMG/M
3300011062\|Ga0138582_1034752	Not Available	579	Open in IMG/M
3300011065\|Ga0138533_1128641	Not Available	538	Open in IMG/M
3300011069\|Ga0138592_1125278	Not Available	524	Open in IMG/M
3300011075\|Ga0138555_1134559	Not Available	541	Open in IMG/M
3300011080\|Ga0138568_1050069	Not Available	507	Open in IMG/M
3300011088\|Ga0138576_1010577	Not Available	635	Open in IMG/M
3300011088\|Ga0138576_1065095	Not Available	524	Open in IMG/M
3300011089\|Ga0138573_1188930	Not Available	784	Open in IMG/M
3300011108\|Ga0138601_117566	Not Available	548	Open in IMG/M
3300012212\|Ga0150985_119798025	Not Available	510	Open in IMG/M
3300012469\|Ga0150984_122622525	Not Available	573	Open in IMG/M
3300014156\|Ga0181518_10549613	Not Available	542	Open in IMG/M
3300014162\|Ga0181538_10631466	Not Available	557	Open in IMG/M
3300014164\|Ga0181532_10685270	Not Available	553	Open in IMG/M
3300014165\|Ga0181523_10562540	Not Available	627	Open in IMG/M
3300016705\|Ga0181507_1042485	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Isosphaerales → Isosphaeraceae → Singulisphaera → Singulisphaera acidiphila	551	Open in IMG/M
3300016730\|Ga0181515_1271500	Not Available	602	Open in IMG/M
3300017946\|Ga0187879_10447068	Not Available	716	Open in IMG/M
3300017961\|Ga0187778_10397849	Not Available	903	Open in IMG/M
3300017973\|Ga0187780_10635807	Not Available	767	Open in IMG/M
3300017996\|Ga0187891_1048299	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Isosphaerales → Isosphaeraceae → Singulisphaera → unclassified Singulisphaera → Singulisphaera sp. GP187	1799	Open in IMG/M
3300018008\|Ga0187888_1022112	All Organisms → cellular organisms → Bacteria	3313	Open in IMG/M
3300018008\|Ga0187888_1106379	Not Available	1189	Open in IMG/M
3300018008\|Ga0187888_1216957	Not Available	754	Open in IMG/M
3300018017\|Ga0187872_10102906	Not Available	1426	Open in IMG/M
3300018022\|Ga0187864_10339387	Not Available	660	Open in IMG/M
3300018023\|Ga0187889_10413286	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	582	Open in IMG/M
3300018058\|Ga0187766_10098953	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Isosphaerales → Isosphaeraceae → Singulisphaera → unclassified Singulisphaera → Singulisphaera sp. GP187	1766	Open in IMG/M
3300018062\|Ga0187784_11591026	Not Available	517	Open in IMG/M
3300018088\|Ga0187771_10583406	Not Available	947	Open in IMG/M
3300018468\|Ga0066662_11342982	Not Available	736	Open in IMG/M
3300019278\|Ga0187800_1426934	Not Available	691	Open in IMG/M
3300025576\|Ga0208820_1019966	All Organisms → cellular organisms → Bacteria	2175	Open in IMG/M
3300027570\|Ga0208043_1104468	Not Available	765	Open in IMG/M
3300027625\|Ga0208044_1059232	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Planctomyces → unclassified Planctomyces → Planctomyces sp. SH-PL62	1199	Open in IMG/M
3300027662\|Ga0208565_1062472	Not Available	1170	Open in IMG/M
3300027696\|Ga0208696_1112585	Not Available	898	Open in IMG/M
3300027825\|Ga0209039_10029043	All Organisms → cellular organisms → Bacteria	2690	Open in IMG/M
3300027825\|Ga0209039_10393304	Not Available	531	Open in IMG/M
3300027854\|Ga0209517_10548341	Not Available	621	Open in IMG/M
3300030494\|Ga0310037_10260333	Not Available	749	Open in IMG/M
3300030659\|Ga0316363_10291995	Not Available	653	Open in IMG/M
3300032160\|Ga0311301_10332662	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Isosphaerales → Isosphaeraceae → Singulisphaera → unclassified Singulisphaera → Singulisphaera sp. GP187	2396	Open in IMG/M
3300032160\|Ga0311301_10389188	All Organisms → cellular organisms → Bacteria → PVC group	2145	Open in IMG/M
3300032160\|Ga0311301_10637670	Not Available	1521	Open in IMG/M
3300032160\|Ga0311301_10944032	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Isosphaerales → Isosphaeraceae → Singulisphaera → Singulisphaera acidiphila → Singulisphaera acidiphila DSM 18658	1153	Open in IMG/M
3300032515\|Ga0348332_13448302	Not Available	512	Open in IMG/M
3300032892\|Ga0335081_10515827	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Isosphaerales → Isosphaeraceae	1499	Open in IMG/M
3300033402\|Ga0326728_10574811	Not Available	887	Open in IMG/M
3300034091\|Ga0326724_0566115	Not Available	571	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.17%
Host-Associated	Host-Associated	1.83%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	77.98%
Aquatic	Environmental → Aquatic	20.18%
Plants	Host-Associated → Plants	1.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	75.23%
Freshwater	Environmental → Aquatic → Freshwater	20.18%
Peat	Environmental → Terrestrial → Peat	1.83%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.92%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.92%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	59.63%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	20.18%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	12.84%
Loam	Environmental → Terrestrial → Soil → Loam	2.75%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.83%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.92%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	58.72%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	16.51%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	12.84%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	3.67%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.75%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.83%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.92%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	58.72%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	9.17%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	6.42%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	4.59%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	3.67%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	3.67%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	3.67%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.75%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	1.83%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.92%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.92%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.92%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.92%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003218	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1	Environmental	Open in IMG/M
3300003297	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 19 (Metagenome Metatranscriptome, Counting Only)	Environmental	Open in IMG/M
3300004474	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 60 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004475	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 62 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004596	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 37 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004599	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 21 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004600	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 56 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004601	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 22 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004602	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 52 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004604	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 31 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004608	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 9 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004613	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 25 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004616	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 15 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004618	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 55 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004973	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 19 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006860	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 63 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009521	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG	Environmental	Open in IMG/M
3300009524	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG	Environmental	Open in IMG/M
3300009630	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_40	Environmental	Open in IMG/M
3300009672	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG	Environmental	Open in IMG/M
3300009683	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG	Environmental	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300009824	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011034	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 30 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011040	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 79 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011041	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 17 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011050	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 56 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011053	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 9 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011057	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 25 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011058	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 22 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011060	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 73 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011062	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 72 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011065	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 11 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011069	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 19 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011075	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 36 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011080	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 53 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011088	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 62 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011089	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 58 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011108	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 77 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300014156	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaG	Environmental	Open in IMG/M
3300014162	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaG	Environmental	Open in IMG/M
3300014164	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG	Environmental	Open in IMG/M
3300014165	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG	Environmental	Open in IMG/M
3300016705	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300016730	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300017996	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_40	Environmental	Open in IMG/M
3300018008	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_40	Environmental	Open in IMG/M
3300018017	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_40	Environmental	Open in IMG/M
3300018022	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_40	Environmental	Open in IMG/M
3300018023	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_100	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018088	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300019278	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300025576	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_40 (SPAdes)	Environmental	Open in IMG/M
3300027570	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG (SPAdes)	Environmental	Open in IMG/M
3300027625	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG (SPAdes)	Environmental	Open in IMG/M
3300027662	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG (SPAdes)	Environmental	Open in IMG/M
3300027696	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG (SPAdes)	Environmental	Open in IMG/M
3300027825	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300030494	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG (v2)	Environmental	Open in IMG/M
3300030659	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG (v2)	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300033402	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN	Environmental	Open in IMG/M
3300034091	Peat soil microbial communities from McLean, Ithaca, NY, United States - MB00N	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI26339J46600_100062333	3300003218	Bog Forest Soil	MIESPLIREIVGDRFHKVILKLLATRFGPVSPELEAEVRSILDESVLDAVIELAAFSLDLKHFQAEMRAIPRPPEPWDPADEPDPSVEK*
JGI26339J46600_100592263	3300003218	Bog Forest Soil	MIESPLIREITAERSHKHILRLLATRFGPVPPELEAEVKSILDESVLDAVIELAAFSPDLDHFGAALRAVPRPPEPWDPADEPEPKA*
Ga0006818J48916_1120131	3300003297	Peatlands Soil	YNDPNLLSILGGKIAMIESPLIRELTAERSHKHILKLLATRFGLVPPELEAEVRSILDESVLDAANQLAAFSPDLDHFAAELRAIPRPPEPWDPADEPEPNA*
Ga0068968_14945852	3300004474	Peatlands Soil	MIESPLIREIVGDRFHKVILKLLATRFGPVSPDLEAEVRSILDESVLDAVIELAAFSPDLKHFQAEMRAIPRPPEPWDPADEPDPSVEKRGDDGRDE*
Ga0068969_10487791	3300004475	Peatlands Soil	AERSHKHILKLLATRFGLVPPELEAEVRSILDESVLDAANQLAAFSPDLDHFAAELRAIPRPPEPWDPADEPEPNA*
Ga0068969_10750621	3300004475	Peatlands Soil	AERSHKHILKLLATRFGLVPPELEAEVRSILDESVLDAANLLAAFSPDLDHFAAELRAIPRPPEPWDPADEPEPNA*
Ga0068949_12561862	3300004596	Peatlands Soil	LLSILGGKIAMIESPLIRELTAERSHKHILKLLATRFGLVPPELEAEVRSILDESVLDAAIQLAAFSPDLDHFAAELRAIPRPPEPWDPADEPEPNA*
Ga0068933_12707911	3300004599	Peatlands Soil	MIESLLIREIVAERRHKDILKVLAIRFGPVPAELEAEVKAILDESVLDAVVALAAASPDLEHFGAELRAIPRPPEPWDPADEPEPKA*
Ga0068964_12493942	3300004600	Peatlands Soil	MIESLLIREITAERSHKHILRLLATRFGPVPPELEAEVKSILDESVLDAVIELAAFSPDLDHFGAALRAVPRPPEPWDPADEPEPKA*
Ga0068934_12809042	3300004601	Peatlands Soil	LIREIVGDRFHKVILKLLATRFGPVSPDLEAEVRSILDESVLDAVIELAAFSPDLEHFQAELRAIPQPPEPWDPADEPDPSVEKRGDDGRDE*
Ga0068960_12400921	3300004602	Peatlands Soil	KDPNLLSILGGKTAMIESPLIRELTAERSHKHILKLLATRFGLVPPELEAEVRSILDESVLDAANQLAAFSPDLDHFAAELRAIPRPPEPWDPADEPEPNA*
Ga0068943_13093691	3300004604	Peatlands Soil	SILGGKIAMIESPLIRELTAERSHKHILKLLATRFGLVPPELEAEVRSILDESVLDAANLLAAFSPDLDHFAAELRAIPRPPEPWDPADEPEPNA*
Ga0068924_13033072	3300004608	Peatlands Soil	MIESPLIREIVGDRFHKVILKLLATRFGPVSPDLEAEVRSILDESVLDAVIELAAFSPDLKHFQAEMRAIPRPPEPWDPADEPDPSVEKRGDDGRDESRR*
Ga0068937_12402051	3300004613	Peatlands Soil	GGKTVMIESPLIREIVGDRFHKVILKLLATRFGPVSPDLEAEVRSILDESVLDAVIELAAFSPDLKHFQAEMRAIPRPPEPWDPADEPDPSVEKRGDDGRDE*
Ga0068930_13795641	3300004616	Peatlands Soil	VTIESLLIREIVAERRHKDILKVLAIRFGPVPAELEAEVKAILDESVLDAVVALAAASPDLEHFGAELRAIPRPPEPWDPADEPEPKA*
Ga0068930_14024761	3300004616	Peatlands Soil	EIVGDRFHKVILKLLATRFGPVSPDLEAEVRSILDESVLDAVIELAAFSPDLKHFQAEMRAIPRPPEPWDPADEPDPSVEKRGDDGRDE*
Ga0068963_10163221	3300004618	Peatlands Soil	MIESPLIREIVAEVRQKDILKFLTRFGPVPPELEAEVKSILDESVMDAVVELSTSCPDLEHFQAEMRAIPRPPEPWDPADEPEPKA*
Ga0072322_13202752	3300004973	Peatlands Soil	MIDSLVRSLLIRELAAERSHKHILKFLATRFGSVPPELAAEVRSILDETVLDAVVELAASSPDLEHFGAGVRAIPRPPEPWDPADEPEPNA*
Ga0066388_1074353201	3300005332	Tropical Forest Soil	KKAMIESPLIREITAERSHKHILRALRARFGPVPPEVETEVKSILDETVLDAAIELAVASPNLERFRAELQVIPRPPEPWDPADEPWPIRENQGEDGQDA*
Ga0066903_1042182862	3300005764	Tropical Forest Soil	MIESPLIREIVAEEVHENILNFFQTRFGPVPPELEAEVRSILDKTVLRAALELAAFSPDLEHFTEELRAIPRPPEPWDPTDEPEPTVEKRGENGQEG*
Ga0066903_1090813621	3300005764	Tropical Forest Soil	LSILGGKKAMIESPLIREIVAEGRHKDILRFLRNRFGPVPPELEAEVRSVLDETVLDAAIDLATFCPDLEQFRAELRAIPRPPEPWDPADEPWPTGENRGENGQDA*
Ga0063829_10277861	3300006860	Peatlands Soil	NLLSILGGKTVMIESPLIREIVAEGRQKDILRALRTRFGPVTPELEAVVKSILDETVLDAAIDLAVSSPHLEHFATELRAIPRPPEPWDPADEPDPSVEKRGDDGRDE*
Ga0063829_14498052	3300006860	Peatlands Soil	MIESPLIREIVAESSHKHILKFLVTRFGPVPPELAAEVRSILDETVLDAVVELAASSPDLEHFGAGVRAIPRPPEPWDPADEPEPNA*
Ga0116222_11135242	3300009521	Peatlands Soil	GTRTPNLLSILGGKTVMIESPLIREIVAESSHKHILKFLVTRFGPVPPELAAEVRSILDETVLDAVVELAASSPDLEHFGAGVRAIPRPPEPWDPADEPEPNA*
Ga0116222_12386121	3300009521	Peatlands Soil	TNLLSILRGKTIMIEPLELVRSLLIREIVAERSHKHILKFLATRFGSVPPELEAEVRSILDETVLDAAVELAASSPDLEHFATALRAIPRPPEPWDPADEPEPTV*
Ga0116225_13626862	3300009524	Peatlands Soil	MIESPLIREIVGDRFHKVILKLLATRFGPVSPDLEAEVRSILDESVLDAVIELAAFSPDLEHFQAELRAIPQPPEPWDPADEPDPSVEKRGDDGRDE*
Ga0116114_10372711	3300009630	Peatland	MIESPLIREITAERSHKHILRLLATRFGPVPPDLEAEVKSILDESVLDAVIELAAFSPDLDHFGAALRVVPRPPEPWDPADEPEPKA*
Ga0116114_11255911	3300009630	Peatland	MIDSLVRSLLIREIVAERRHKDILKVLAIRFGPVPPELEAEVKAILDETVLDAVVELAAASPDLEHFGAELRAIPRPPEPWDPADEPEPKA*
Ga0116114_11499612	3300009630	Peatland	MIESPLIREIVAEVRHKDILKFLTRFGPVPPELEAQVKSIFDESVLDAVVELSTSCPDLEHFQAEMRAIPRPPEPW
Ga0116215_10512091	3300009672	Peatlands Soil	LVRSLLIREIVAERSHKHILKFLATRFGSVPPELEAEVRSILDETVLDAAVELAASSPDLEHFATALRAIPRPPEPWDPADEPEPTV*
Ga0116215_12867811	3300009672	Peatlands Soil	KIAMIESPLIRELTAERSHKHILKLLATRFGLVPPELEAEVRSILDESVLDAANLLAAFSPDLDHFAAELRAIPRPPEPWDPADEPEPNA*
Ga0116215_14083401	3300009672	Peatlands Soil	MIESPLIREIVGDRFHKVILKLLATRFGPVSPELEAEVRSILDESVLDAVIELAAFSLDLKHFQAEMRAIPRPPEPWDPADEPDPSVEKRGD
Ga0116224_100209837	3300009683	Peatlands Soil	LLIREIVAERRHKDILKVLAIRFGPVPPELAAEVRSILDETVLDAVVELAASSPDFEQFGAGVRAIPRPPEPWDPADEPEPKA*
Ga0116216_102251162	3300009698	Peatlands Soil	LLSILGGKTVMIESPLIREIVAESSHKHILKFLVTRFGPVPPELAAEVRSILDETVLDAVVELAASSPDLEHFGAGVRAIPRPPEPWDPADEPEPNA*
Ga0116219_100231197	3300009824	Peatlands Soil	MIESLLIREIVAERRHKDILKVLAIRFGPVPPELAAEVRSILDETVLDAVVELAASSPDLEQFGAGVRAIPRPPEPWDPADEPEPKA*
Ga0116219_101908231	3300009824	Peatlands Soil	TFKRLGTRTPNLLSILGGKTVMIESPLIREIVAESSHKHILKFLVTRFGPVPPELAAEVRSILDETVLDAVVELAASSPDLEHFGAGVRAIPRPPEPWDPADEPEPNA*
Ga0074046_103578852	3300010339	Bog Forest Soil	VVPFGSILGGKTVMIESPLIREIVGDRFHKVILKLLATRFGPVSPELEAEVRSILDESVLDAVIELAAFSLDLKHFQAEMRAIPRPPEPWDPADEPDPSVEK*
Ga0074046_104775411	3300010339	Bog Forest Soil	MIESPLIREIVAEVRHKDILKFLTRFGPVPPELEAQVKSIFDESVLDAVVELSTSCPDLEHFQAEMRAIPRPPEPWDPADEPEPKA*
Ga0074046_105292082	3300010339	Bog Forest Soil	MIESPLIREITAERSHKHILRLLATRFGPVPPELEAEVKSILDESVLDAVIELAAFIPDLDHFGTALRAVPRPPEPWDPADEPEPKA*
Ga0074046_108593991	3300010339	Bog Forest Soil	SNPGFYRGKGAKDILKVLTIRFGPVPPELEAEVRSIRDETVLDAALELAASCTDLEHFRTELRAIPRPPEPWDPADEPEPKA*
Ga0074045_100248602	3300010341	Bog Forest Soil	MIESPLIREIVAEGRQKDILRALRTRFGPVTPELEAEVKSILDETVLDAAIDLAVSSPHLEHFATELRAIPRPPEPWDPADEPDPSVEKRGDDGRDE*
Ga0074045_108671541	3300010341	Bog Forest Soil	LIRELTAERSHKHILKLLATRFGLVPPELEAEVRSILDESVLDAAIQLAAFSPDLDHFAAELRAIPRPPEPWDPADEPEPNA*
Ga0074044_111231581	3300010343	Bog Forest Soil	LLIREIVAERRHKDILKVLAIRFGPVPPELAAEVRSILDETVLDAVVELAASSPDLEQFGAGVRAIPRPPEPWDPADEPEPKA*
Ga0136449_1001277734	3300010379	Peatlands Soil	MIEPLELVRSLLIREMVAQGRQKDILKVLAIRFGHVPPELEAEVKAILDETVLDAAVELAASWPDLEHFQAELRAIPRPPEPWDPADEPEPKD*
Ga0136449_1002556254	3300010379	Peatlands Soil	MMRLSIPGGKTVMIDSLVKSLLIREIVAEARHRDILKVLAVPFGPVPPELEAELKSIFDESVLDAAVELSTSCRDLRQFQAGLRAIPRPPEPWDPADEPEPKA*
Ga0136449_1003569612	3300010379	Peatlands Soil	MIEPLELVRSLLIREIVAEARHKDILKFLTRFGPVPPELEAEVKSILDESVLDAVVDLSTSCSDLEHFQAAMRAIPRPPEPWDPTDEPEPKA*
Ga0136449_1017681322	3300010379	Peatlands Soil	MIESPLIREITAERSHKHILRLLATRFGPVPPELEAEVKSILDESVLDAVIELVAFSPGLDHFGAALRAVPRRPEPWDPADEPEPKA*
Ga0136449_1017864902	3300010379	Peatlands Soil	PLIREIVGDRFHKVILKLLATRFGPVSPDLEAEVRSILDESVLDAVIELAAFSLDLKHFQAEMRAIPRPPEPWDPADEPDPSVEKRGDDG*
Ga0136449_1021950643	3300010379	Peatlands Soil	IREIVAERRHKDILKVLAIRFGPVPPELAAEVRSILDETVLDAVVELAASSPDLEQFGAGVRAIPRPPEPWDPADEPEPKA*
Ga0136449_1027252212	3300010379	Peatlands Soil	MIESPLIREITAERSHKQILGLLATRFGPVPPELEAKVRSILDETVLDAVNQLAALSPDLEHFGAEMRAVPRPPEPWDPADEPEPKA*
Ga0136449_1036724972	3300010379	Peatlands Soil	TAERSHKHILKLLATRFGLVPPELEAEVRSILDESVLDAANQLAAFSPDLDHFAAELRAIPRPPEPWDPADEPEPNA*
Ga0138549_1037821	3300011034	Peatlands Soil	SPLIRELTAERSHKHILKLLATRFGLVPPELEAEVRSILDESVLDAANQLAAFSPDLDHFAAELRAIPRPPEPWDPADEPEPNA*
Ga0138587_1330391	3300011040	Peatlands Soil	LLSILGGKIAMIESPLIRELTAERSHKHILKLLATRFGLVPPELEAEVRSILDESVLDAANQLAAFSPDLDHFAAELRAIPRPPEPWDPADEPEPNA*
Ga0138591_1402901	3300011041	Peatlands Soil	LRYKDPNLLSILGGKSVMIESLLIREIVAERRHKDILKVLAIRFGPVPAELEAEVKAILDESVLDAVVALAAASPDLEHFGAELRAIPRPPEPWDPADEPELKA*
Ga0138571_1668981	3300011050	Peatlands Soil	NLLSILGGKSVMIESLLIREITAERSHKHILRLLATRFGPVPPELEAEVKSILDESVLDAVIELAAFSPDLDHFGAALRAVPRPPEPWDPADEPEPKA*
Ga0138531_1754961	3300011053	Peatlands Soil	SPLIREIVAESSHKHILKFLVTRFGPVPPELAAEVRSILDETVLDAVVELAASSPDLEHFGAGVRAIPRPPEPWDPADEPEPNA*
Ga0138544_11009102	3300011057	Peatlands Soil	GGKTVMIESPLIREIVGDRFHKVILKLLATRFGPVSPDLEAEVRSTLDESVLDAVIELAAFSPDLKHFQAEMRAIPRPPEPWDPADEPDPSVEKRGDDGRDE*
Ga0138541_10959352	3300011058	Peatlands Soil	ESPLIREIVGDRFHKVILKLLATRFGPVSPDLEAEVRSILDESVLDAVIELAAFSPDLEHFQAEMRAIPRPPEPWDPADEPDPSVEKRGDDGRDE*
Ga0138583_10242831	3300011060	Peatlands Soil	SVMIESLLIREIVAERRHKDILKVLAIRFGPVPAELEAEVKAILDESVLDAVVALAAASPDLEHFGAGVRAIPRPPEPWDPADEPEPNA*
Ga0138582_10347522	3300011062	Peatlands Soil	MIESPLIREIVGDRFHKVILKLLATRFGPVSPDLEAEVRSILDESVLDAVIELAAFSPDLKHFQAEMRAIPRPPEPWDPADEPDPSVEKRGDDGRDE
Ga0138533_11286411	3300011065	Peatlands Soil	QVFTRLRYKDPNLLSILGGKTVMIDSLVRSLLIRELTAERSHKHILKFLATRFGSVPPELAAEVRSILDETVLDAVVELAASSPDLEHFGAGVRAIPRPPEPWDPADEPEPKA*
Ga0138592_11252781	3300011069	Peatlands Soil	NLLSILGGKSVMIESLLIREIVAERRHKDILKVLAIRFGPVPPELAAEVRSILDETVLDAVVELAASSPDLEQFGAGVRAIPRPPEPWDPADEPEPNA*
Ga0138555_11345591	3300011075	Peatlands Soil	LRYKDPNLLSILGGKTVMIESPLIREIVAEGRQKDILRALRTRFGPVTPELEAVVKSILDETVLDAAIDLAVSSPHLEHFATELRAIPRPPEPWDPADEPDPSVEKRGDDGRDE*
Ga0138568_10500691	3300011080	Peatlands Soil	GKSVMIESLLIREIVAERRHKDILKVLAIRFGPVPAELEAEVKAILDESVLDAVVALAAASPDLEHFGAELRAIPRPPEPWDPADEPEPKA*
Ga0138576_10105771	3300011088	Peatlands Soil	RYKDPNLLSILGGKSVMIESLLIREIVAERRHKDILKVLAIRFGPVPAELEAEVKAILDESVLDAVVALAAASPDLEHFGAELRAIPRPPEPWDPADEPEPKA*
Ga0138576_10650951	3300011088	Peatlands Soil	TVMIESPLIREITAERSHKHILRLLATRFGPVPPELEAEVKSILDESVLDAVIELAAFSPDLDHFGAALRAVPRPPEPWDPADEPEPKA*
Ga0138573_11889302	3300011089	Peatlands Soil	SILGGKTVMIDSLVRSLLIREIVAERRHKDILKVLAIRFGPVPPELAAEVRSILDETVLDAVVELAASSPDLEQFGAGVRAIPRPPEPWDPADEPEPNA*
Ga0138601_1175661	3300011108	Peatlands Soil	MIESPLIREIVGDRFHKVILKLLATRFGPVSPELEAEVRSILDESVLDSVMELAAFSPDLKHFQAEMRAIPRPPEPWDPADEPDPSVEKRGDDGRDE*
Ga0150985_1197980251	3300012212	Avena Fatua Rhizosphere	REITAERSHKHILKLLTARFGLVPPELETEVRSILDESVLDVAIELAAFSPDLEHVRAGLEAIPRPPEPWDPADEPEPQV*
Ga0150984_1226225252	3300012469	Avena Fatua Rhizosphere	LIREIVAERRHKDILRFLRNRFGPVPPELEAEVRSILNESVLDAAVDLATFSPDLEHFGAELRAVPRPPEPWDPTEEAKPTAEQRDQDSP*
Ga0181518_105496131	3300014156	Bog	MIESPLIREIVAESSHKHILKFLVTRFGPVPPELAAEVRSILDETVLDAVVELAASSPDLEQFGAGVRAIPRPPEPWDPADEPEPNA*
Ga0181538_106314662	3300014162	Bog	SLVRSLLIREIVAERRHKDILKVLAIRFGPVPPELAAEVRSILDETVLDAVVELAASSPDLEQFGAGVRAIPRPPEPWDPADEPEPKA*
Ga0181532_106852701	3300014164	Bog	SLLIRELTAERSHKHILKFLATRFGSVPPELAAEVRSILDETVLDAVVELAASSPDLEHFGAGVRAIPRPPEPWDPANEPEPNA*
Ga0181523_105625401	3300014165	Bog	MRLSIPGGKTVMIDSLVRSLLIREIVAERRHKDILKVLAIRFGPVPPELAAEVRSILDETVLDAVVELAASSPDLEQFGAGVRAIPRPPEPWDPADEPEPKA*
Ga0181507_10424852	3300016705	Peatland	AEKGQKYILKFLVTRFGPVPPELEAEVKSILDESVLDAVVELSTSCPDLEHFQAEMRAIPRPPEPWDPADEPEPKA
Ga0181515_12715001	3300016730	Peatland	MIESPLIREIVAESSHKHILKFLVTRFGPVPPELAAEVRSILDETVLDAVVELAASSPDLEHFGARVRAIPRPPEPWDPADEPEPNA
Ga0187879_104470681	3300017946	Peatland	MIDSLVRSLLIRELTAERSHKHILKFLATRFGSVPPELAAEVRSILDETVLDAVVELAASSPDLEHFGARVRAIPRPPEPWDPANEPEPNA
Ga0187778_103978491	3300017961	Tropical Peatland	MIESLLIREIVAERRHKDILKVLAIRFGPVPPELAAEVRSILDETVLDAVVELAASSPDLEHFGAGVRAIPRPPEPWDPADEPEPNA
Ga0187780_106358072	3300017973	Tropical Peatland	LSILGGKTVMIESPLIREITAERSHKHILRALRTRFGPLPSELEAEVKSIFDEMVLDAAIELAVSSPDLERFGAELRAIPRPPEPWDPADEREPTA
Ga0187891_10482991	3300017996	Peatland	MIDSLVRSLLIREIVAERRHKDILKVLAIRFGPVPPELEAEVKAILDESVLDAVVALAAASPDLEHFGAELRAIPRPPE
Ga0187888_10221123	3300018008	Peatland	MIESPLIREIVAEVRHKDILKFLTRFGPVPPELEAQVKSIFDESVLDAVVELSTSCPDLEHFQAEMRAIPRPPEPWDPADEPEPKA
Ga0187888_11063792	3300018008	Peatland	MIESPLIREITAERSHKHILRLLATRFGPVPPDLEAEVKSILDESVLDAVIELAAFSPDLDHFGAALRAVPRPPEPWDPADEPEPKA
Ga0187888_12169571	3300018008	Peatland	MIESPLIREIVGDRFHKVILKLVATRFGPVSPDLEAEVRSILDESVLDAVIELAAFSPDLKHFQAEMRAIPRPPEPWDPADEPDPSVEKRGDDG
Ga0187872_101029063	3300018017	Peatland	MIESPLIREITAERSHKHILRLLATRFGPVPPDLEAEVKSILDESVLDAVIELAAFSPDLDHFGAALRVVPRPPEPWDPADEPEPKA
Ga0187864_103393871	3300018022	Peatland	MIDSLVRSLLIREIVAERRHKDILKVLAIRFGPVPPELEAEVKAILDETVLDAVVELAAASPDLEHFGAELRAIPRPPEPWDPADEPEPKA
Ga0187889_104132862	3300018023	Peatland	WWSSARSLGKSVMIESPLIREIVAEVRHKDILKFLTRFGPVPPELEAQVKSIFDESVLDAVVELSTSCPDLEHFQAEMRAIPRPPEPWDPADEPEPKA
Ga0187766_100989531	3300018058	Tropical Peatland	GKAAMIESLLIREITAERSHKHILRVLAARFGPVPPELEAEVRAIFDESVLDAAVELAALSPDIEHFRTGLRAIPRPPEPWDPADEPEPTA
Ga0187784_115910261	3300018062	Tropical Peatland	MIESPLIREIVGDRFHKVILKLLATRFGPVSPDLEAEVRSILDESVLDAVIELAAFSPDLKHFQAEMRAIPRPPEPWDPADEPDPSIEKRGDDGRDE
Ga0187771_105834061	3300018088	Tropical Peatland	KTTPHTARKTVMIESPLIREIVAESSHKHILKFLVTRFGPVPPELAAEVRSILDETVLDAVVELAASSPDLEHFGAGVRAIPRPPEPWDPADEPQPNA
Ga0066662_113429821	3300018468	Grasslands Soil	AMIESPLIREIVAERRHKDILRFLRNRFGPVPAELEAEVRSILDESVLDAAVDLATFSPDLEHFGAELRAIPRPPEPWDPTEEAEPTAEQRCQGCRGQT
Ga0187800_14269342	3300019278	Peatland	VMIDSLVRSLLIRELTAERSHKHILKLLATRFGLVPPELEAEVRSILDESVLDAANQLAAFSPDLDHFAAELRAIPRPPEPWDPADEPEPNA
Ga0208820_10199661	3300025576	Peatland	MIESPLIREIVGDRFHKVILKLVATRFGPVSPDLEAEVRSILDESVLDAVIELAAFSPDLDHFGAALRVVPRPPEPWDPADEPEPKA
Ga0208043_11044682	3300027570	Peatlands Soil	TTFKRLGTRTPNLLSILGGKTVMIESPLIREIVAESSHKHILKFLVTRFGPVPPELAAEVRSILDETVLDAVVELAASSPDLEHFGAGVRAIPRPPEPWDPADEPEPNA
Ga0208044_10592321	3300027625	Peatlands Soil	MIESPLIREITAERSHKHILRLLATRFGPVPPELEAEVKSILDESVLDAVIELAAFSPDLDHFGAALRAVPRPPEPWDPADEPEPKA
Ga0208565_10624721	3300027662	Peatlands Soil	MIESPLIREIVGDRFHKVILKLLATRFGFVSPELEAEVRSILDESVLDSVMELAAFSPDNLKHFQAEMRAIPRPP
Ga0208696_11125852	3300027696	Peatlands Soil	MIESLLIREIVAERRHKDILKVLAIRFGPVPPELAAEVRSILDETVLDAVVELAASSPDLEQFGAGVRAIPRPPEPWDPADEPEPKA
Ga0209039_100290434	3300027825	Bog Forest Soil	MIESPLIREIVGDRFHKVILKLLATRFGPVSPELEAEVRSILDESVLDAVIELAAFSLDLKHFQAEMRAIPRPPEPWDPADEPDPSVEK
Ga0209039_103933041	3300027825	Bog Forest Soil	TVMIESPLIREITAERSHKHILRLLATRFGPVPPELEAEVKSILDESVLDAVIELAAFSPDLDHFGAALRAVPRPPEPWDPADEPEPKA
Ga0209517_105483411	3300027854	Peatlands Soil	KDPNLLSILGGKTVMIDSLVRSLLIREIVAERRHKDILKVLAIRFGPVPPELEAEVKAILDETVLDAVVELAAASPDLEHFGAELRAIPRPPEPWDPADEPEPKA
Ga0310037_102603332	3300030494	Peatlands Soil	LTAERSHKHILKLLATRFGLVPPELEAEVRSILDESVLDAANLLAAFSPDLDHFAAELRAIPRPPEPWDPADEPEPNA
Ga0316363_102919952	3300030659	Peatlands Soil	MIESPLIREIVGDRFHKVILKLLATRFGPVSPDLEAEVRSILDESVLDAVIELAAFSPDLEHFQAELRAIPQPPEPWDPADEPDPSVEKRGDDGRDE
Ga0311301_103326621	3300032160	Peatlands Soil	MIDSLVRSLLIRELTAERSHKHILKLLATRFGLVPPELEAEVRSILDESVLDAANQLAAFSPDLDHFAAELRAIPRPPEPWDPADEPEPNA
Ga0311301_103891883	3300032160	Peatlands Soil	MIDSLVKSLLIREIVAEARHRDILKVLAVPFGPVPPELEAELKSIFDESVLDAAVELSTSCRDLRQFQAGLRAIPRPPEPWDPADEPEPKA
Ga0311301_106376701	3300032160	Peatlands Soil	MIEPLELVRSLLIREMVAQGRQKDILKVLAIRFGHVPPELEAEVKAILDETVLDAAVELAASWPDLEHFQAELRAIPRPPEPWDPADEPEPKD
Ga0311301_109440323	3300032160	Peatlands Soil	MIESPLIREITAERSHKQILGLLATRFGPVPPELEAKVRSILDETVLDAVNQLAALSPDLEHFGAEMRAVPRPPEPWDPADEPEPKA
Ga0348332_134483022	3300032515	Plant Litter	LLSILGGKSVMIKSPLFREIVAEVRQKDILKFLTRFGPVPPELEAEVKSIVDESVLDAVVELSTSCPDLEHFQAEMRAIPRPPEPWDPADEPEPKA
Ga0335081_105158271	3300032892	Soil	AERRHKDILKVLAIRFGPVPPELAAEVRSILDETVLDAVVELAASSPDLGQFGAGVRAIPRPPEPWDPADEPEPKA
Ga0326728_105748112	3300033402	Peat Soil	MIDSLVRSLLIRELTAERSHKHILKLLATHFGLVPPELEAEVRSILDESVLDAAIQLAAFSPDLDHFAAELRAIPRPPEPWDPADEPEPNA
Ga0326724_0566115_227_490	3300034091	Peat Soil	MIESPLIRELTAERSHKHILKLLATRFGLVPPELEAEVRSILDESVLDAAIQLAAFSPDLDHFAAELRAIPRPPEPWDPADEPEPNA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F088423

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences