Metagenome / Metatranscriptome Family F088426

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F088426
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	85 residues
Representative Sequence	MSVVERFSKVSSGDFEHELERIWDGITTVRESVVEAVRDEKLTPIEGVSILACTTGQLLGYQAFHGQPQPAELLPYFFAAKQ
Number of Associated Samples	50
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	35.19 %
% of genes near scaffold ends (potentially truncated)	36.70 %
% of genes from short scaffolds (< 2000 bps)	76.15 %
Associated GOLD sequencing projects	49
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (56.881 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (62.385 % of family members)
Environment Ontology (ENVO)	Unclassified (67.890 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (67.890 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 32.93% β-sheet: 14.63% Coil/Unstructured: 52.44%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF01139	RtcB	4.59
PF00578	AhpC-TSA	1.83
PF07681	DoxX	1.83
PF08940	DUF1918	1.83
PF07676	PD40	1.83
PF13683	rve_3	1.83
PF00072	Response_reg	0.92
PF03320	FBPase_glpX	0.92
PF00294	PfkB	0.92
PF02494	HYR	0.92
PF06736	TMEM175	0.92
PF06525	SoxE	0.92
PF05752	Calici_MSP	0.92
PF00903	Glyoxalase	0.92
PF00696	AA_kinase	0.92
PF01243	Putative_PNPOx	0.92
PF16952	Gln-synt_N_2	0.92
PF02371	Transposase_20	0.92
PF01850	PIN	0.92
PF03372	Exo_endo_phos	0.92
PF07995	GSDH	0.92
PF13413	HTH_25	0.92
PF02452	PemK_toxin	0.92
PF03706	LPG_synthase_TM	0.92
PF01022	HTH_5	0.92
PF00082	Peptidase_S8	0.92
PF01799	Fer2_2	0.92
PF01872	RibD_C	0.92
PF08241	Methyltransf_11	0.92
PF10442	FIST_C	0.92
PF01232	Mannitol_dh	0.92
PF07366	SnoaL	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG1690	RNA-splicing ligase RtcB, repairs tRNA damage	Translation, ribosomal structure and biogenesis [J]	4.59
COG2259	Uncharacterized membrane protein YphA, DoxX/SURF4 family	Function unknown [S]	1.83
COG4270	Uncharacterized membrane protein	Function unknown [S]	1.83
COG0246	Mannitol-1-phosphate/altronate dehydrogenases	Carbohydrate transport and metabolism [G]	0.92
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	0.92
COG0392	Predicted membrane flippase AglD2/YbhN, UPF0104 family	Cell wall/membrane/envelope biogenesis [M]	0.92
COG1494	Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase or related protein	Carbohydrate transport and metabolism [G]	0.92
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	0.92
COG2133	Glucose/arabinose dehydrogenase, beta-propeller fold	Carbohydrate transport and metabolism [G]	0.92
COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	Defense mechanisms [V]	0.92
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.92
COG3548	Uncharacterized membrane protein	Function unknown [S]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.88 %
All Organisms	root	All Organisms	43.12 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.88 %
cellular organisms	root	All Organisms → cellular organisms	43.12 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.88 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	43.12 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.88 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	28.44 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.88 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	27.52 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.88 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	18.35 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.88 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	11.01 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.92 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.92 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.92 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.88 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	11.01 %
Microbacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	0.92 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.92 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.92 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.88 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	11.01 %
Actinophytocola	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinophytocola	0.92 %
Microbacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Microbacterium	0.92 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.92 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.88 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	11.01 %
unclassified Microbacterium	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Microbacterium → unclassified Microbacterium	0.92 %
unclassified Actinophytocola	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinophytocola → unclassified Actinophytocola	0.92 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.92 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.88 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	11.01 %
Actinophytocola sp.	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinophytocola → unclassified Actinophytocola → Actinophytocola sp.	0.92 %
Microbacterium sp. KUDC0405	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Microbacterium → unclassified Microbacterium → Microbacterium sp. KUDC0405	0.92 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.92 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459015\|G14TP7Y01B5ITJ	Not Available	618	Open in IMG/M
3300000443\|F12B_10569825	Not Available	598	Open in IMG/M
3300000559\|F14TC_101579663	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Microbacterium → unclassified Microbacterium → Microbacterium sp. KUDC0405	1218	Open in IMG/M
3300000956\|JGI10216J12902_100956432	Not Available	508	Open in IMG/M
3300000956\|JGI10216J12902_105028568	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1568	Open in IMG/M
3300000956\|JGI10216J12902_109718718	Not Available	2134	Open in IMG/M
3300003373\|JGI25407J50210_10053320	All Organisms → cellular organisms → Bacteria	1023	Open in IMG/M
3300003373\|JGI25407J50210_10134939	Not Available	608	Open in IMG/M
3300005172\|Ga0066683_10476023	Not Available	764	Open in IMG/M
3300005558\|Ga0066698_10088289	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2030	Open in IMG/M
3300005713\|Ga0066905_101253945	Not Available	665	Open in IMG/M
3300005713\|Ga0066905_101291959	Not Available	656	Open in IMG/M
3300005981\|Ga0081538_10004599	All Organisms → cellular organisms → Bacteria	12683	Open in IMG/M
3300005981\|Ga0081538_10023232	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4464	Open in IMG/M
3300006854\|Ga0075425_100551457	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1327	Open in IMG/M
3300006918\|Ga0079216_11766007	Not Available	530	Open in IMG/M
3300009162\|Ga0075423_13075526	Not Available	511	Open in IMG/M
3300009840\|Ga0126313_10002060	All Organisms → cellular organisms → Bacteria	11033	Open in IMG/M
3300009840\|Ga0126313_10380332	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1117	Open in IMG/M
3300009840\|Ga0126313_11234028	Not Available	617	Open in IMG/M
3300009840\|Ga0126313_11784634	Not Available	514	Open in IMG/M
3300010043\|Ga0126380_10609068	Not Available	862	Open in IMG/M
3300010109\|Ga0127497_1115598	Not Available	503	Open in IMG/M
3300010145\|Ga0126321_1004856	Not Available	627	Open in IMG/M
3300010301\|Ga0134070_10168763	Not Available	791	Open in IMG/M
3300010362\|Ga0126377_10471504	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1282	Open in IMG/M
3300010905\|Ga0138112_1022136	Not Available	546	Open in IMG/M
3300011993\|Ga0120182_1024299	Not Available	566	Open in IMG/M
3300012022\|Ga0120191_10012775	All Organisms → cellular organisms → Bacteria → Proteobacteria	1078	Open in IMG/M
3300012199\|Ga0137383_11050432	Not Available	592	Open in IMG/M
3300012201\|Ga0137365_10030244	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4167	Open in IMG/M
3300012201\|Ga0137365_10251342	All Organisms → cellular organisms → Bacteria	1315	Open in IMG/M
3300012204\|Ga0137374_10002586	All Organisms → cellular organisms → Bacteria	21200	Open in IMG/M
3300012204\|Ga0137374_10012320	All Organisms → cellular organisms → Bacteria	9966	Open in IMG/M
3300012204\|Ga0137374_10021125	All Organisms → cellular organisms → Bacteria	7374	Open in IMG/M
3300012204\|Ga0137374_10044376	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4662	Open in IMG/M
3300012204\|Ga0137374_10049217	All Organisms → cellular organisms → Bacteria → Terrabacteria group	4362	Open in IMG/M
3300012204\|Ga0137374_10054017	All Organisms → cellular organisms → Bacteria	4104	Open in IMG/M
3300012204\|Ga0137374_10201409	All Organisms → cellular organisms → Bacteria	1714	Open in IMG/M
3300012204\|Ga0137374_10222595	Not Available	1606	Open in IMG/M
3300012204\|Ga0137374_10311508	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1286	Open in IMG/M
3300012204\|Ga0137374_10426949	Not Available	1046	Open in IMG/M
3300012204\|Ga0137374_10505729	Not Available	937	Open in IMG/M
3300012204\|Ga0137374_10581561	Not Available	856	Open in IMG/M
3300012204\|Ga0137374_10674025	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	780	Open in IMG/M
3300012204\|Ga0137374_10818126	Not Available	690	Open in IMG/M
3300012204\|Ga0137374_10864623	Not Available	666	Open in IMG/M
3300012204\|Ga0137374_10994332	All Organisms → cellular organisms → Bacteria	607	Open in IMG/M
3300012206\|Ga0137380_10737544	Not Available	853	Open in IMG/M
3300012207\|Ga0137381_10620662	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	941	Open in IMG/M
3300012207\|Ga0137381_10787890	Not Available	824	Open in IMG/M
3300012208\|Ga0137376_11775387	Not Available	507	Open in IMG/M
3300012209\|Ga0137379_10391878	Not Available	1298	Open in IMG/M
3300012209\|Ga0137379_11330184	Not Available	623	Open in IMG/M
3300012211\|Ga0137377_11508389	Not Available	598	Open in IMG/M
3300012349\|Ga0137387_10644040	Not Available	767	Open in IMG/M
3300012350\|Ga0137372_10000540	All Organisms → cellular organisms → Bacteria	35579	Open in IMG/M
3300012350\|Ga0137372_10006968	All Organisms → cellular organisms → Bacteria	10940	Open in IMG/M
3300012350\|Ga0137372_10039169	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4287	Open in IMG/M
3300012350\|Ga0137372_10054188	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3526	Open in IMG/M
3300012350\|Ga0137372_10084512	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2696	Open in IMG/M
3300012350\|Ga0137372_10381323	Not Available	1072	Open in IMG/M
3300012350\|Ga0137372_10476552	Not Available	932	Open in IMG/M
3300012353\|Ga0137367_10044411	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3369	Open in IMG/M
3300012353\|Ga0137367_10151494	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1692	Open in IMG/M
3300012353\|Ga0137367_10288866	Not Available	1175	Open in IMG/M
3300012353\|Ga0137367_10655187	Not Available	733	Open in IMG/M
3300012353\|Ga0137367_10727761	Not Available	690	Open in IMG/M
3300012354\|Ga0137366_10135467	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1857	Open in IMG/M
3300012354\|Ga0137366_10456297	Not Available	926	Open in IMG/M
3300012354\|Ga0137366_10711040	Not Available	716	Open in IMG/M
3300012354\|Ga0137366_10850027	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	646	Open in IMG/M
3300012355\|Ga0137369_10011825	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	8524	Open in IMG/M
3300012355\|Ga0137369_10059892	All Organisms → cellular organisms → Bacteria	3276	Open in IMG/M
3300012355\|Ga0137369_10105725	All Organisms → cellular organisms → Bacteria	2301	Open in IMG/M
3300012355\|Ga0137369_10110575	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2237	Open in IMG/M
3300012355\|Ga0137369_10120156	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2126	Open in IMG/M
3300012355\|Ga0137369_10177035	Not Available	1670	Open in IMG/M
3300012355\|Ga0137369_10720625	Not Available	685	Open in IMG/M
3300012355\|Ga0137369_10787721	Not Available	649	Open in IMG/M
3300012355\|Ga0137369_10809425	Not Available	638	Open in IMG/M
3300012355\|Ga0137369_11003797	Not Available	553	Open in IMG/M
3300012356\|Ga0137371_10206209	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1539	Open in IMG/M
3300012356\|Ga0137371_10434867	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1016	Open in IMG/M
3300012358\|Ga0137368_10086377	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2482	Open in IMG/M
3300012358\|Ga0137368_10184883	Not Available	1499	Open in IMG/M
3300012359\|Ga0137385_11262108	Not Available	601	Open in IMG/M
3300012360\|Ga0137375_10233616	Not Available	1711	Open in IMG/M
3300012360\|Ga0137375_10257729	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1606	Open in IMG/M
3300012360\|Ga0137375_10366792	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1271	Open in IMG/M
3300012360\|Ga0137375_10368921	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1266	Open in IMG/M
3300012360\|Ga0137375_10808204	Not Available	753	Open in IMG/M
3300012360\|Ga0137375_11266429	Not Available	559	Open in IMG/M
3300012373\|Ga0134042_1223771	Not Available	585	Open in IMG/M
3300012532\|Ga0137373_10189700	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinophytocola → unclassified Actinophytocola → Actinophytocola sp.	1701	Open in IMG/M
3300012532\|Ga0137373_10865826	All Organisms → cellular organisms → Bacteria	665	Open in IMG/M
3300012532\|Ga0137373_11127163	Not Available	559	Open in IMG/M
3300013500\|Ga0120195_1027100	Not Available	554	Open in IMG/M
3300014154\|Ga0134075_10399708	Not Available	607	Open in IMG/M
3300017659\|Ga0134083_10421857	Not Available	585	Open in IMG/M
3300019279\|Ga0184642_1505205	Not Available	627	Open in IMG/M
3300022195\|Ga0222625_1437320	Not Available	547	Open in IMG/M
3300028878\|Ga0307278_10024477	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2780	Open in IMG/M
3300030006\|Ga0299907_10581284	Not Available	874	Open in IMG/M
3300030006\|Ga0299907_10812555	Not Available	704	Open in IMG/M
3300030903\|Ga0308206_1080579	Not Available	701	Open in IMG/M
3300031229\|Ga0299913_11583611	Not Available	607	Open in IMG/M
3300032126\|Ga0307415_101218268	Not Available	710	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	92.66%
Host-Associated	Host-Associated	6.42%
Engineered	Engineered	0.92%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	89.91%
Plants	Host-Associated → Plants	6.42%
Aquatic	Environmental → Aquatic	2.75%
Solid Waste	Engineered → Solid Waste	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	89.91%
Roots	Host-Associated → Plants → Roots	3.67%
Freshwater	Environmental → Aquatic → Freshwater	2.75%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.75%
Grass	Engineered → Solid Waste → Grass	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	86.24%
Loam	Environmental → Terrestrial → Soil → Loam	3.67%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	3.67%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.75%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.83%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.92%
Composting	Engineered → Solid Waste → Grass → Composting	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	79.82%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.59%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	3.67%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.75%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.83%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.83%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.83%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.92%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.92%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.92%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	62.39%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	5.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.67%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	3.67%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	3.67%
Terrestrial	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial	2.75%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.83%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.83%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.83%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.83%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.83%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.92%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.92%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459015	Litter degradation PV4	Engineered	Open in IMG/M
3300000443	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.2B clc assemly	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300003373	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005981	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010109	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_0_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010145	Soil microbial communities from Hawaii, USA to study soil gas exchange rates - KP-HI-INT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09082015	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010905	Grasslands soil microbial communities from Angelo Coastal Reserve, California, USA - 15_R_Wat_40_2_8_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300011993	Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - C1.rep1	Environmental	Open in IMG/M
3300012022	Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - C6	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012373	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300013500	Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - T4.rep2	Environmental	Open in IMG/M
3300014154	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015	Environmental	Open in IMG/M
3300017659	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300019279	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022195	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300030006	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67	Environmental	Open in IMG/M
3300030903	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_369 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031229	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38	Environmental	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
4PV_03631270	2170459015	Switchgrass, Maize And Mischanthus Litter	MRLREEVTMPQTTLTQTMSVPERFSKLSSRDFEHELERIWGGIDAVRESVVEAVRDEKLTPIEGVSILACTTGQLLGYQAFHGQPQPAELLPYLFAAKRQ
F12B_105698252	3300000443	Soil	MPATTLTPSMSVVERFSNVSSGDFEHELERIWDGIATVRETVVEAVREEKLTPIEGVSILACTTGQLLGYQAFHGQPQPAELLPYFKQ*
F14TC_1015796631	3300000559	Soil	MPTTLTPSMSVVERFSKVSSGDFEHELERIWDGITAVRESVVEAVREEKLTPIEGVSILACTTGQLLGYQAFHGQPQPAELLPYFKQ*
JGI10216J12902_1009564322	3300000956	Soil	MPQTTLTPSMSVVERFSKVSPGDFEHELERIWDGIATVRASVVEAVRDEKLTPIEGVSILACTTGQLLGYQAFHGQ
JGI10216J12902_1050285682	3300000956	Soil	MPQTTLNPSMSVVERFSKVSSQDFEHELERIWDGVQTVRDSVIEAVRDEKLTPIEGISILACTTGQLFGYQAFHGQPQPAELLPYFLAGKRQ*
JGI10216J12902_1097187182	3300000956	Soil	MPQTILNPSMSVVERFSKVSTRDFEHELERIWDGIQTVRESVVEAVRDEKLTPIEGISILACTTGQLLGYQAFHGQPQPAELLPYVFAGKRQ*
JGI25407J50210_100533203	3300003373	Tabebuia Heterophylla Rhizosphere	MPQTTLTPSMSVVERFSKVSSGDFEHELERIWDGITAVRESVVEAVREEKLTPIEGVSILACTTGQLLGYQAFHGQPEPTALL
JGI25407J50210_101349391	3300003373	Tabebuia Heterophylla Rhizosphere	MPTTLTPSMSVVERFSKVSSGDFEHELDRIWDGIATVRESVVEAVREEKLTPIEGVSILACTTGQLLGYQAFHGQPQPAELFPYFTGKQ*
Ga0066683_104760231	3300005172	Soil	MPTTLTPSMSVVERFSKVSSGDFEHELERIWDGITTVRESVVEAVREEKLTPIEGVSILACTTGQLLGYQAFHGQPQPAELLPYFKQ*
Ga0066698_100882892	3300005558	Soil	MPQTTLSPSMSVVERFSKVSSGDFEHELERIWGGIATVRESVVEAVRDEKLTPIEGVSILACTTGQLLGYQAFHGQPQPAELLPYFFSGKQ*
Ga0066905_1012539451	3300005713	Tropical Forest Soil	MPQASLTPSMSVVERFSKVSSGDFEHELERIWDGVQTVRDSVIEAVRDEKLTPIEGISILACTTGQLFGYQAFHGQPQPAEVLPYLLAGKRQ*
Ga0066905_1012919591	3300005713	Tropical Forest Soil	MPHTTQTPSMSVVERFSKVSSRDFEHELDRIWDGIASVRESVVEAVRDDKLTPIEGISILACTTGQLLGYQAFHGQPQPAELLPYFVGGKQ*
Ga0081538_100045997	3300005981	Tabebuia Heterophylla Rhizosphere	MPQTTLTPSMSVVERFSKVSSGDFEHELERIWDGITAVRESVVEAVREEKLTPIEGVSILACTTGQLLGYQAFHGQPEPTALLPYFRSRQ*
Ga0081538_100232321	3300005981	Tabebuia Heterophylla Rhizosphere	MPQTTLTPSMSVVERFSKVSSGDFEHELERIWDGITAVRESVVEAVREEKLTPIEGVSILACTTGQLLGYQAFHGQPEP
Ga0075425_1005514572	3300006854	Populus Rhizosphere	MPVTLTTSMSVVERFSKLSPQDFEHELDRIWDGIQAVRDSVVEAVKDEKLTPIEGVSILSCTTGQLFGYQAFHGQPQPAELLPYYLAGKH*
Ga0079216_117660071	3300006918	Agricultural Soil	MAQTTLTPSMSVVERFSKVSSRDFEHELERIWGGIDAVRESVVEAVKEEKLTPIEGVSILACTTGQLLGYQAFHGQPQTAELLPYFFAAQRQ*
Ga0075423_130755261	3300009162	Populus Rhizosphere	MLVTLTTSMSVVGRFSKLSPQDFEHELDRIWDGIQAVRDSVVEAVKDEKLTPIEGVSILSCTTGQLFGYQAFHGQPQPAELLPYFFAGKQ*
Ga0126313_1000206013	3300009840	Serpentine Soil	MSVVERFSKVSSGDFEHELERIWDGITAVRESVVEAVREEKLTPIEGVSILACTTGQLLGYQAFHGQPEPTALLPYFGGRQ*
Ga0126313_103803321	3300009840	Serpentine Soil	MSVVERFSKVSSRDFEHELERIWDGIATVRESVVEAVRDEKLTPIEGVSILACTTGQLLGYQAFHGQPQPAELLPYLFAGQRQ*
Ga0126313_112340281	3300009840	Serpentine Soil	GDREEVTMPQTTLTPSMSVVERFSKVSSRDFEHELERIWDGIATVRESVVEAVRDEKLTPIEAVSILACTTGQLLGYQAFHGQPQPAELLPYFLSGKQ*
Ga0126313_117846341	3300009840	Serpentine Soil	MPQTTLTPSMSVVERFSEVSSGDFEHELERIWDGITAVRESVIEAVRAEKLTPIEGVSILACTTGQLLGYQAFHGQPEPAALLPYFRSRQ*
Ga0126380_106090682	3300010043	Tropical Forest Soil	MSVVERFSKVSSRDFEHELDRIWDGIASVRESVVEAVRDDKLTPIEGISILSCTTGQLLGYQAFHGQPQSAELLPYFLAGKQ*
Ga0127497_11155981	3300010109	Grasslands Soil	LTPSMSVVERFSKVSAGDFEHELERIWGGIEAVHQSVVEAVRDEKLTPIEGVSILACTTGQLLGYQAFHGQPQPAELLPYFFAAKQ*
Ga0126321_10048561	3300010145	Soil	MTVVERFSKVSSRDFEHELERIWDGIATVRESVVEAVRDEKLTPIEGISILACTTGQLFGYQAFHGQPQPAELLPYFLGGKQ*
Ga0134070_101687631	3300010301	Grasslands Soil	MSVVERFSKVSSGDFEHELERIWDGITTVRESVVEAVRDEKLTPIEGVSILACTTGQLLGYQAFHGQPQPAELLPYFFAAKQ*
Ga0126377_104715041	3300010362	Tropical Forest Soil	MSVVERFSKVSSRDFEHELERIWDGIATVRESVVEAVRGDKLTPIEGISILACTTGQLLGYQAFHGQPQPAELLPYFLSGKQ*
Ga0138112_10221362	3300010905	Grasslands Soil	MTMPATLTPSMSVVERFSKLSSRDFEHELDRIWDGIQVVRDSVIEAVKEDKLTPIEGVSILACTTGQLLGYQAFHGQPQPAELLPYLFAGQRQ*
Ga0120182_10242991	3300011993	Terrestrial	MSVVERFSKVSSGDFEHELERIWDGIATVRDSVVEAVRDEKLTPIEGISILACTTGQLFGYQAF
Ga0120191_100127753	3300012022	Terrestrial	MSVVERFSKVSSGDFEQELDRLWDGIATVRESVVEAVRDEKLTPIEGVSILACTTGQLLGYQAFHGQPQAAR
Ga0137383_110504321	3300012199	Vadose Zone Soil	MSVIERFSKVSSRDFEHELERIWDGIATVRESVVEAVRDEKLTPIEGVSILACTTGQLLGYQAFHGQPQPAELLPYFFSGKQ*
Ga0137365_100302445	3300012201	Vadose Zone Soil	MDHVNPGRPRTEATERRWTMPQTTLTPSMSVVERFSKVSSGDFEHELERIWDGIATVRESVVEAVRNEKLTPIEGISILACTTGQLLGYQAFHGQPQPAELLPYFLGAKQ*
Ga0137365_102513421	3300012201	Vadose Zone Soil	MSVVERFSKVSSGDFEHELERIWDGIQTVRASVVEAVRDEKMTPIEGVSILACTTGQLLGYQAFHGQPQPAELLPYFFAGQRQ*
Ga0137374_100025863	3300012204	Vadose Zone Soil	MFENGILRVNGDNLGTELREEVTMPQTTLAPSMSVVERFSKVSARDFEHELERIWAGIETVRESVVDGVRDEKLTPIEGISILSCTTGQLLGYQAFHGQPQPAELLPYFLGGKRQ*
Ga0137374_1001232010	3300012204	Vadose Zone Soil	MSVVERFSKVSSRDFEHELERIWDGIATVRESVVEAVRDEKLMPIEGISILACTTGQLLGYQAFHGQPQPAELLPYFLGGKQ*
Ga0137374_1002112510	3300012204	Vadose Zone Soil	MSVVERFSKVSSRDFEHELERIWDGIATVRESVVEAVRDDKLTPIEGISILACTTGQLLGYQAFHGQPQPAELLPYFLGGKQ*
Ga0137374_100443761	3300012204	Vadose Zone Soil	MSVVERFSKISSQDFEQELERIWGGIEAVHQSVVEAVRDEKLTPIEGVSILACTTGQLLGYQAFHGQ
Ga0137374_100492171	3300012204	Vadose Zone Soil	MSVVERFSKVSSGDFEHELERIWDGIATVRESVVEAVRDEKLTPIEAVSILACTTGQLLGYQAFHGQPQPAELLPYFFSGKQ*
Ga0137374_100540173	3300012204	Vadose Zone Soil	MPATLTTSMSVVERFSKLSSRDFEHELERIWDGIQVVRESVVEAVKEEKLTPIEGVSILACTTGQLLGYQAFHGQPQPAELLPYFFAGKQ*
Ga0137374_102014091	3300012204	Vadose Zone Soil	MSVVERFSKVSSGDFEHELERIWDGIQTVRASVVEAVRDEKLTPIEGVSILACTTGQLLGYQAFHGQPQPAELLPY
Ga0137374_102225952	3300012204	Vadose Zone Soil	MSVVERFSKISSGDFEHELERIWDGIQTVRASVVEAVRDEKLTPIEGVSILACTTGQLLGYQAFHGQPQPAELLPY
Ga0137374_103115082	3300012204	Vadose Zone Soil	MSVVERFSKVSSGDFEHELERIWDGIQTVRASVVEAVRDEKMTPIEGVSILACTTGQLLGYQAFHGQPQPAELLPYFFAGQR
Ga0137374_104269491	3300012204	Vadose Zone Soil	SSGDFEHELERIWDGIQTVRASVVEAVRDEKLTPIEGVSILACTTGQLLGYQAFHGQPQPAELLPYFFAGQRQ*
Ga0137374_105057291	3300012204	Vadose Zone Soil	MSVVERFSKVSSGDFEHELERIWDGIQTVRASVVEAVRDEKLTPIEGVSILACTTGQLLGYQAFHGQPQPAELLPYFFAGQR
Ga0137374_105815611	3300012204	Vadose Zone Soil	SMSVVERFSKVSSGDFEHELERIWDGIATVRESVVEAVRDDKLTPIEGISILACTTGQLLGYQAFHGQPQPAELLPYFLGGKQ*
Ga0137374_106740252	3300012204	Vadose Zone Soil	MSVVERFSKTSSQDFEHELERIWGGIEAVHQSVVEAVRDEKLTPIEGVSILACTTGQLLGYQAFHGQ
Ga0137374_108181261	3300012204	Vadose Zone Soil	QTTLTPSMSVVERFSKVSSGDFEHELERIWDGIATVRESVVEAVRDEKLMPIEAISILACTTGQLLGYQAFHGQPQPAELLPYFLGGKQ*
Ga0137374_108646231	3300012204	Vadose Zone Soil	MSVVERFSKTSSQDFEPELERIWGGIEAVHQSVVEAVRDEKLTPIEGVSILACTTGQLLGYQAFHGQPQPAE
Ga0137374_109943323	3300012204	Vadose Zone Soil	SMSVVERFSKVSSGDFEHELERIWDGIATVRESVVEAVRDEKLTPIEGISILACTTGQLLGYQAFHGQPQPAELLPYFLGGKQ*
Ga0137380_107375442	3300012206	Vadose Zone Soil	MSVVERFSKVSSGDFEHELERIWDGIQTVRASVVEAVRDEKLTPIEGVSILACTTGQLLGYQAFHGQPQPAELLPYLFAGQRQ*
Ga0137381_106206622	3300012207	Vadose Zone Soil	MSVIERFSKVSSRDFEHELERIWDGIATVRESVVEGVRDEKLTPIEGVSILACTTGQLLGYQAFHGQPQPAELLPYFFSGKQ*
Ga0137381_107878901	3300012207	Vadose Zone Soil	MSVVERFSKVSSGDFEHELERIWDGIQTVRASVVEAVRDEKLTPIEGVSILACTTGQLLGYQAFHGQAQPAELLPYLFAGQRQ*
Ga0137376_117753871	3300012208	Vadose Zone Soil	MSVVERFSKVSSGDFEHELERIWDGIQTVRASVVEAVRDEKLTPIEGVSILACTTGQLLGYQAFHGQPQPAELLPYYFAGKQ*
Ga0137379_103918781	3300012209	Vadose Zone Soil	MDHVNPGRPRTEATERRWTMPQTTLTPSMSVVERFSKVSSGDFEHELERIWDGIATVRESVVEPVRNEKLTPIECISILACTTGQLLGYQAFHGQPQPAELLPYFFSGKQ*
Ga0137379_113301841	3300012209	Vadose Zone Soil	MSVVERFSKVSSGDFEHELERIWDGIQTVRASVVEAVRDEKLTPIEGVSILACTTGQLLGYQAFHGQPQPAELLPYFFAGQRQ*
Ga0137377_115083891	3300012211	Vadose Zone Soil	MDHVNPGRPRTEATERRWTMPQTTLTPSMSVVERFSKVSSGDFEHELERIWDGIATVRESVVEAVRNEKLTPIEGISILACTTGQLLGYQAFHGQPQPAELLPYF
Ga0137387_106440401	3300012349	Vadose Zone Soil	MSVVERFSKVSSGDFEHELERIWDGIQTVRASVVEAVRDEKLTPIEGVSILACTTGQLLGYQAFHGQPQPAELLPYFFTGQRQ*
Ga0137372_1000054037	3300012350	Vadose Zone Soil	MSVVERFSKVSSGDFEHELERIWDGIATVRESVVEAVRDEKLTPIEGISILACTTGQLLGYQAFHGQPQPAELLPYFLGGKQ*
Ga0137372_1000696811	3300012350	Vadose Zone Soil	MSVVERFSKVSSGDFEHELERIWDGIATVRESVVEAVRDEKLMPIEAISILACTTGQLLGYQAFHGQPQPAELLPYFLGGKQ*
Ga0137372_100391691	3300012350	Vadose Zone Soil	MSVVERFSKVSSGDFEHELERIWDGIQTVRASVVEAVRDEKMTPIEGVSILACTTGQLLGYQAFHGQPQPAELLPYFF
Ga0137372_100541884	3300012350	Vadose Zone Soil	MSVVERFSKTSSQDFEPELERIWGGIEAVHQSVVEAVRDEKLTPIEGVSILACTTGQLLGYQAFHGQPQPAELLPYFAASRQ*
Ga0137372_100845123	3300012350	Vadose Zone Soil	MSVVERFSKVSSGDFEHELERIWDGIQTVRASVIEAVRDEKLTPIEGVSILACTTGQLLGYQAFHGQPQPAELLPYFFAGQRQ*
Ga0137372_103813232	3300012350	Vadose Zone Soil	MSVVERFSRVSSEDFEHELERIWDGIATVRESVVEAVRDEKLTPIEAISILACTTGQLLGYQAFHGQPQPAELLPYFLGGKQ*
Ga0137372_104765522	3300012350	Vadose Zone Soil	MSVVERFSKVSSGDFEHELERIWDGIQIVRESVVEAVKEEKLTPIEGVSILACTTGQLLGYQAFHGQTQPAELLPYFFAGKQ*
Ga0137367_100444113	3300012353	Vadose Zone Soil	MDHANPGRPRTEATERRWTMPQTTLSPSMSVVERFSKVSSGDFEHELERIWDGIATVRESVVEAVRDEKLTPIEGISILACTTGQLLGYQAFHGQPQPAELLPYFLGGKQ*
Ga0137367_101514942	3300012353	Vadose Zone Soil	MHQTTLTPSMSVVERFSKVSSRDFEHELERIWDGIATVRESVVEAVRDEKLTPIEAVSILACTTGQLLGYQAFHGQPQPAELLPYFFSGKQ*
Ga0137367_102888662	3300012353	Vadose Zone Soil	MSVVERFSKISSGDFEHELERIWDGIQTVRASVVEAVRDEKLTPIEGVSILACTTGQLLGYQAFHGQPQPAELLPYF
Ga0137367_106551871	3300012353	Vadose Zone Soil	RVTKRERQEEVTMPQTTLTPSMSVVERFSKVSSGDFEHELERIWDGIQTVRASVVEAVRDEKMTPIEGVSILACTTGQLLGYQAFHGQPQPAELLPYFFAGQRQ*
Ga0137367_107277611	3300012353	Vadose Zone Soil	MSVVERFSKVSSGDFEHELERIWDGIQTVRASVVEAVRDEKLTPIEGVSILACTTGQLLGYQAFHGQPQ
Ga0137366_101354672	3300012354	Vadose Zone Soil	MSVVERFSKVSSGDFEHELERIWDGIQTVRASVVEAVRDEKMTPIEGVSILACTTGQLLGYQAFHGQPQPAELLPYFFTGQRQ*
Ga0137366_104562972	3300012354	Vadose Zone Soil	MSPSMSVVERFSKVSSRDFEHELERIWDGIATVRESVVEAVREEKLTPIEGVAILACTTGQLFGYQAFHGQPQPAELLPYFFSGKQ*
Ga0137366_107110401	3300012354	Vadose Zone Soil	MSVVERFSKVSSGDFEHELERIWDGIQTVRASVVEAVRDEKLTPIEGVSILACTTGQLLGYQAFH
Ga0137366_108500271	3300012354	Vadose Zone Soil	PSMSVVERFSKVSSGDFEHELERIWDGIATVRESVVEAVRNEKLTPIEGISILACTTGQLLGYQAFHGQPQPAELLPYFFSGKQ*
Ga0137369_100118251	3300012355	Vadose Zone Soil	MSVVERFSKVSSRDFEHELERIWDGIATVRESVVEAVRDEKLMPIEGISILACTTGQLLGYQAFHGQPQPAELRPYFLGGKQ*
Ga0137369_100598925	3300012355	Vadose Zone Soil	MTLTPSMSVVERFSKVSSGDFEHELERIWDGIQTVRASVVEAVRDEKLTPIEGVSILACTTGQLLGYQAFHGQPQPAELLPYFFAGQRQ*
Ga0137369_101057252	3300012355	Vadose Zone Soil	MGVVERFSKVSSRDFEHELERIWDGIDAVRESVVEAVRAEKLTPIEGVSILACTTGQLLGYQAFHGQPQTAELLPYFFAGKRQ*
Ga0137369_101105754	3300012355	Vadose Zone Soil	MSVVERFSKISSGDFEHELERIWDGIQTVRASVVEAVRDEKLTPIEGVSILACTTGQLLGYQAFHGQPQPAELLPYFIGQRQ*
Ga0137369_101201562	3300012355	Vadose Zone Soil	MSVVERFSKTSSQDFEPELERIWGGIEAVHHSVVEAVRDEKLTPIEGVSILACTTGQLLGYQAFHGQPQPAELLPYFAASRQ*
Ga0137369_101770352	3300012355	Vadose Zone Soil	MMSVVERFSKVSSGDFEHELERIWGGIDAVRESVVEAVRAEKLTPIEGVSILACTTGQLLGYQAFHGQPQAAELLPYFFAGKRQ*
Ga0137369_107206251	3300012355	Vadose Zone Soil	MSVVERFSKVSSGDFEHELERIWDGIQTVRASVVEAVRDEKLTPIEGVSILACTTGQLLGYQAFHGQPQPAELL
Ga0137369_107877212	3300012355	Vadose Zone Soil	MGVVERFSKISSRDFEHELERMWGGIETVRESVVEAVRDEKLTPIEGVSILACTTGQLLGYQAFHGQPQPAELLPYFAASRQ*
Ga0137369_108094251	3300012355	Vadose Zone Soil	TTLTPSMSVVERFSKISSQDFEPELERIWGGIEAVHQSVVEAVRDEKLTPIEGVSILACTTGQLLGYQAFHGQPQPAEFLPWFAASRQ*
Ga0137369_110037971	3300012355	Vadose Zone Soil	MSVVERFSKVSSRDFEHELDRIWAGMDTIRESVVEAVRADKLTPIEGVSILACTTGQLLGYQAFHGQPQAAELLP
Ga0137371_102062091	3300012356	Vadose Zone Soil	MSVVERFSKVSSGDFEHELERIWDGIQTVRASVVEAVRDEKMTPIEGVSILACTTGQLLGYQAFHGHPQPAELLPYFFAGQRQ*
Ga0137371_104348672	3300012356	Vadose Zone Soil	PSMSVVERFSKVSSGDFEHELERIWDGIQTVRASVVEAVRDEKMTPIEGVSILACTTGQLLGYQAFHGQPQPAELLPYFFTGQRQ*
Ga0137368_100863774	3300012358	Vadose Zone Soil	MSVVERFSKISSQDFEPELERIWGGIEAVHQSVVEAVRDEKLTPIEGVSILACTTGQLLGYQAFHGQPQPAELL
Ga0137368_101848832	3300012358	Vadose Zone Soil	MSVVERFSKVSSRDFEHELERIWDGFATVRESVVEAVRDEKLTPIEGISILACTTGQLLGYQAFHGQPQPAELLPYFLGGKQ*
Ga0137368_101982741	3300012358	Vadose Zone Soil	EHELERIWDGIATVRESVVEAVRDEKLTPIEAVSILACTTGQLLGYQAFHGQPQPAELLPYFFSGKQ*
Ga0137385_112621081	3300012359	Vadose Zone Soil	MSVIERFSKVSSRDFEHELERIWDGIATVRESVVEAVRDEKLTPIEGVSILACTTGQLLSYQAFHGQPQPAELLPYFFSGKQELDPKRL*
Ga0137375_102336164	3300012360	Vadose Zone Soil	MFKSAWTALIRVDEEENRGDREEVTMPQTLSPSMSVVERFSKVSSRDFEHELERIWDGIATVRESVVEAVRDEKLTPIEGVSILACTTGQLLGYQAFHGQPQPAELLPYFFSGKQ*
Ga0137375_102577291	3300012360	Vadose Zone Soil	MSVVERFSKISSQDFEPELERIWGGIEAVHQSVVEAVRDEKLTPIEGVSILACTTGQLLGYQAFHGQPQPAEFLPWFAASRQ*
Ga0137375_103667921	3300012360	Vadose Zone Soil	MHQTTLTPSMSVVERFSKVSSRDFEHELERIWDGIATVRESVVEAVRDEKLTPIEAVSILACTTGQLLGYQAFHGQPQPAEPLPYFFSGKQ*
Ga0137375_103689211	3300012360	Vadose Zone Soil	FSKVSSRDFEHELERIWDGIATVRESVVEAVRDEKLTPIEGVSILACTTGQLLGYQAFHGQPQPAELLPYFFAAKRQ*
Ga0137375_108082041	3300012360	Vadose Zone Soil	MSVVERFSKISSQDFEQELERIWGGIEAVHQSVVEAVRDEKLTPIEGVSILACTTGQLLGYQAFHGQPQPAELLPYFFANRQ*
Ga0137375_112664291	3300012360	Vadose Zone Soil	MGVVERFSKISSRDFEHELERMWGGIETVRESVVEAVRDEKLTPIEGVSILACTTGQLLGYQAFHGQPQPAELLPYF
Ga0134042_12237711	3300012373	Grasslands Soil	MSVVERFSEVSSGDFEHELERIWDGITAVRESVVEAVRAEKLTPIEGVSILACTTGQLLGFQAFHGQPEPAALLPYFKSRQ*
Ga0137373_101897003	3300012532	Vadose Zone Soil	MPATLTTSMSVVERFSKLSSRDFEHELERIWDGIQIVRESVVEAVKEEKLTPIEGVSILACTTGQLLGYQAFHGQPQPAELLPYFFAGKQ*
Ga0137373_108658262	3300012532	Vadose Zone Soil	TLTPSMSVVERFSKVSSRDFEHELERIWDGIATVRESVVEAVRDEKLMPIEGISILACTTGQLLGYQAFHGQPQPAELLPYFLGGKQ*
Ga0137373_111271632	3300012532	Vadose Zone Soil	MSVVERFSKVSSGDFEHELERIWDGIQTDRASVVEAVRDEQMTPIEGVSILACTTGQLLGYQAFHGQPQPAELLP
Ga0120195_10271001	3300013500	Terrestrial	MPATLTPSMSVVERFSNVSSGDFEHELERIWDGIATVRESVVEAVREQKLTPIEAVSILACTTGQLLGYQAFHG
Ga0134075_103997081	3300014154	Grasslands Soil	MSVVERFSKVSAGDFEHELERIWGGIEAVHQSVVEAVRDEKLTPIEGVSILACTTGQLLGYQAFHGQPQPAELL
Ga0134083_104218572	3300017659	Grasslands Soil	MPQTTLTPSMSVVERFSKVSSGDFEHELERIWDGIQIVRASVVEAVRDEKLTPIEGVSILACTTGQLLGYQAFHGQPQPAELLPYLFAGQ
Ga0184642_15052052	3300019279	Groundwater Sediment	MPQTSLPPSMSVVERFSKVSSGDFEHELERIWDGIQTVRASVVEAVRDEKLTPIEGVSILACTTGQLLGYQAFHGQPQPAELLPYLFAGQRQ
Ga0222625_14373201	3300022195	Groundwater Sediment	VMMPQTTLTPSMSVVERFAKISSGDFEHEVERIWDGIETVRESVVEAVRAEKLTPIEGISILACTTGQLFGYQAFHGQPQPAELLPYLLAGKRQ
Ga0307278_100244775	3300028878	Soil	MPQTTLTPSMSIVERFSNVSSGDFEHELERIWDGITTVRESVVEGVREEKLTPIEGISILACTTGQLLGYQAFHGQPQAAELLPYFSSGKQ
Ga0299907_105812842	3300030006	Soil	MAQGTLTPSMSVAERFSKVSSRDFEHELERIWGGIDAVRESVVEAVKEEKLTPIEGVSILACTTGQLLGYQAFHGQPQTAELLPYFFAAQRQ
Ga0299907_108125552	3300030006	Soil	MAQGTLTPSMSVAERFSKVSSRDFEHELERIWGGIDAVRDSVVEAVKEEKLTPIEGVSILACTTGQLLGYQAFHGQPQPAELLPYFFAAQRQ
Ga0308206_10805792	3300030903	Soil	VTMPTTLTPSMSVVERFSNVSSGDFEHELERIWDGIATVRESVVEGVRDEKLTPIEGVSILACTTGQLLGYQAFHGQPQPAELLPYFSGKQ
Ga0299913_115836111	3300031229	Soil	VAQTTLAPPMSVVERFSKVSSRDFEHELERIWEGIDLVRESVVEAVRADKLTPIEGVSILACTTGQLLGYQAFHGQPQAAELLPYFFAGKRQ
Ga0307415_1012182681	3300032126	Rhizosphere	MPQATLTPSMSVVERFSKVSSRDFEHELERIWDGLDTVRESVVEAVRAEKLTPIEGISILACTTGQLLGYQSFHGQVQP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F088426

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences