Metagenome / Metatranscriptome Family F088455

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F088455
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	42 residues
Representative Sequence	MLIRAMEAHKVLDIIALTLLLFAFAAIANALLLVVERRVHRR
Number of Associated Samples	91
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.92 %
% of genes near scaffold ends (potentially truncated)	98.17 %
% of genes from short scaffolds (< 2000 bps)	91.74 %
Associated GOLD sequencing projects	87
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.52

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (94.495 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (33.945 % of family members)
Environment Ontology (ENVO)	Unclassified (44.037 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (48.624 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 57.14% β-sheet: 0.00% Coil/Unstructured: 42.86%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.52
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.52
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF00881	Nitroreductase	48.62
PF09084	NMT1	14.68
PF13977	TetR_C_6	7.34
PF03729	DUF308	4.59
PF00440	TetR_N	4.59
PF13458	Peripla_BP_6	3.67
PF00005	ABC_tran	3.67
PF02311	AraC_binding	2.75
PF04879	Molybdop_Fe4S4	1.83
PF05015	HigB-like_toxin	0.92
PF00557	Peptidase_M24	0.92
PF00528	BPD_transp_1	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG0715	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	Inorganic ion transport and metabolism [P]	14.68
COG4521	ABC-type taurine transport system, periplasmic component	Inorganic ion transport and metabolism [P]	14.68
COG3247	Acid resistance membrane protein HdeD, DUF308 family	General function prediction only [R]	4.59
COG3549	Plasmid maintenance system killer protein	Defense mechanisms [V]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	94.50 %
Unclassified	root	N/A	5.50 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	94.50 %
Unclassified	root	N/A	5.50 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	94.50 %
Unclassified	root	N/A	5.50 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	44.04 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	6.42 %
Unclassified	root	N/A	5.50 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	32.11 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	6.42 %
Unclassified	root	N/A	5.50 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	3.67 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	11.01 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	7.34 %
Bacilli	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	6.42 %
Unclassified	root	N/A	5.50 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	3.67 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.83 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	7.34 %
Bacillales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	6.42 %
Unclassified	root	N/A	5.50 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	3.67 %
Beijerinckiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	0.92 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.92 %
Azospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae	0.92 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	7.34 %
Bacillales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	6.42 %
Unclassified	root	N/A	5.50 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	3.67 %
Methyloferula	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methyloferula	0.92 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.92 %
Azospirillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum	0.92 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	7.34 %
Bacillales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	6.42 %
Unclassified	root	N/A	5.50 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	3.67 %
Methyloferula stellata	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methyloferula → Methyloferula stellata	0.92 %
Azospirillum brasilense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → Azospirillum brasilense	0.92 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2140918008\|ConsensusfromContig368888	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	796	Open in IMG/M
2199352025\|deepsgr__Contig_52650	Not Available	2328	Open in IMG/M
3300000033\|ICChiseqgaiiDRAFT_c1347372	Not Available	502	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_100823929	All Organisms → cellular organisms → Bacteria	738	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_100826802	All Organisms → cellular organisms → Bacteria	622	Open in IMG/M
3300000955\|JGI1027J12803_108527035	All Organisms → cellular organisms → Bacteria	1090	Open in IMG/M
3300004114\|Ga0062593_102486433	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	586	Open in IMG/M
3300004114\|Ga0062593_102712511	All Organisms → cellular organisms → Bacteria → Proteobacteria	564	Open in IMG/M
3300004643\|Ga0062591_102586430	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	535	Open in IMG/M
3300005332\|Ga0066388_104049143	All Organisms → cellular organisms → Bacteria	747	Open in IMG/M
3300005363\|Ga0008090_10265965	All Organisms → cellular organisms → Bacteria	626	Open in IMG/M
3300005363\|Ga0008090_14167919	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	634	Open in IMG/M
3300005436\|Ga0070713_100591275	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1054	Open in IMG/M
3300005546\|Ga0070696_100720681	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	815	Open in IMG/M
3300005546\|Ga0070696_101344341	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	608	Open in IMG/M
3300005764\|Ga0066903_100490550	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2076	Open in IMG/M
3300005764\|Ga0066903_104121453	All Organisms → cellular organisms → Bacteria	778	Open in IMG/M
3300005764\|Ga0066903_105787006	All Organisms → cellular organisms → Bacteria	649	Open in IMG/M
3300005764\|Ga0066903_107695706	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	555	Open in IMG/M
3300006042\|Ga0075368_10512536	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → Azospirillum brasilense	536	Open in IMG/M
3300006051\|Ga0075364_11081250	All Organisms → cellular organisms → Bacteria	545	Open in IMG/M
3300006051\|Ga0075364_11114669	All Organisms → cellular organisms → Bacteria	536	Open in IMG/M
3300006844\|Ga0075428_101815320	All Organisms → cellular organisms → Bacteria	634	Open in IMG/M
3300009088\|Ga0099830_10100840	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	2155	Open in IMG/M
3300009148\|Ga0105243_10015651	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methyloferula → Methyloferula stellata	5734	Open in IMG/M
3300009181\|Ga0114969_10324869	All Organisms → cellular organisms → Bacteria → Proteobacteria	901	Open in IMG/M
3300009792\|Ga0126374_11153211	All Organisms → cellular organisms → Bacteria	618	Open in IMG/M
3300010358\|Ga0126370_11498418	All Organisms → cellular organisms → Bacteria	641	Open in IMG/M
3300010362\|Ga0126377_13579462	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	502	Open in IMG/M
3300010366\|Ga0126379_11829215	All Organisms → cellular organisms → Bacteria	711	Open in IMG/M
3300010366\|Ga0126379_13531336	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	524	Open in IMG/M
3300010398\|Ga0126383_12679739	All Organisms → cellular organisms → Bacteria	581	Open in IMG/M
3300010398\|Ga0126383_13042416	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	547	Open in IMG/M
3300012927\|Ga0137416_10274995	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1386	Open in IMG/M
3300012937\|Ga0162653_100018506	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	919	Open in IMG/M
3300012957\|Ga0164303_11248420	Not Available	547	Open in IMG/M
3300012987\|Ga0164307_10937284	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	700	Open in IMG/M
3300012988\|Ga0164306_11696332	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	548	Open in IMG/M
3300012989\|Ga0164305_10140533	All Organisms → cellular organisms → Bacteria → Proteobacteria	1623	Open in IMG/M
3300015245\|Ga0137409_10881223	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	731	Open in IMG/M
3300016341\|Ga0182035_10311919	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1294	Open in IMG/M
3300016341\|Ga0182035_12126620	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	509	Open in IMG/M
3300016357\|Ga0182032_11707552	All Organisms → cellular organisms → Bacteria	549	Open in IMG/M
3300016371\|Ga0182034_10062739	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2512	Open in IMG/M
3300016445\|Ga0182038_11727174	All Organisms → cellular organisms → Bacteria	564	Open in IMG/M
3300018074\|Ga0184640_10273065	All Organisms → cellular organisms → Bacteria	768	Open in IMG/M
3300019362\|Ga0173479_10244422	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	785	Open in IMG/M
3300020005\|Ga0193697_1091575	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	732	Open in IMG/M
3300021170\|Ga0210400_10749054	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	802	Open in IMG/M
3300021560\|Ga0126371_13734468	Not Available	513	Open in IMG/M
3300022534\|Ga0224452_1247280	All Organisms → cellular organisms → Bacteria → Proteobacteria	546	Open in IMG/M
3300025916\|Ga0207663_10896831	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	709	Open in IMG/M
3300026067\|Ga0207678_10225488	All Organisms → cellular organisms → Bacteria → Proteobacteria	1604	Open in IMG/M
3300026306\|Ga0209468_1095143	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	970	Open in IMG/M
3300026494\|Ga0257159_1069484	All Organisms → cellular organisms → Bacteria	606	Open in IMG/M
3300026844\|Ga0208760_102183	Not Available	564	Open in IMG/M
3300027903\|Ga0209488_10110921	All Organisms → cellular organisms → Bacteria → Proteobacteria	2060	Open in IMG/M
3300028714\|Ga0307309_10206734	Not Available	519	Open in IMG/M
3300028717\|Ga0307298_10060988	All Organisms → cellular organisms → Bacteria	1042	Open in IMG/M
3300028718\|Ga0307307_10158651	All Organisms → cellular organisms → Bacteria → Proteobacteria	708	Open in IMG/M
3300028755\|Ga0307316_10221398	All Organisms → cellular organisms → Bacteria	684	Open in IMG/M
3300028771\|Ga0307320_10225889	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	735	Open in IMG/M
3300028778\|Ga0307288_10080833	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1161	Open in IMG/M
3300028814\|Ga0307302_10432418	All Organisms → cellular organisms → Bacteria	652	Open in IMG/M
3300031544\|Ga0318534_10057041	All Organisms → cellular organisms → Bacteria	2194	Open in IMG/M
3300031545\|Ga0318541_10678808	All Organisms → cellular organisms → Bacteria	575	Open in IMG/M
3300031547\|Ga0310887_10666586	All Organisms → cellular organisms → Bacteria → Proteobacteria	643	Open in IMG/M
3300031549\|Ga0318571_10056246	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	1187	Open in IMG/M
3300031549\|Ga0318571_10273591	All Organisms → cellular organisms → Bacteria	627	Open in IMG/M
3300031572\|Ga0318515_10109492	All Organisms → cellular organisms → Bacteria	1454	Open in IMG/M
3300031680\|Ga0318574_10456735	All Organisms → cellular organisms → Bacteria	747	Open in IMG/M
3300031680\|Ga0318574_10769040	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	564	Open in IMG/M
3300031681\|Ga0318572_10089490	All Organisms → cellular organisms → Bacteria	1721	Open in IMG/M
3300031681\|Ga0318572_10688782	All Organisms → cellular organisms → Bacteria	608	Open in IMG/M
3300031719\|Ga0306917_10664061	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	819	Open in IMG/M
3300031724\|Ga0318500_10069921	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	1540	Open in IMG/M
3300031744\|Ga0306918_10157573	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1683	Open in IMG/M
3300031763\|Ga0318537_10036075	All Organisms → cellular organisms → Bacteria	1770	Open in IMG/M
3300031765\|Ga0318554_10051331	All Organisms → cellular organisms → Bacteria	2259	Open in IMG/M
3300031765\|Ga0318554_10084336	All Organisms → cellular organisms → Bacteria	1775	Open in IMG/M
3300031769\|Ga0318526_10263984	All Organisms → cellular organisms → Bacteria	705	Open in IMG/M
3300031780\|Ga0318508_1132546	All Organisms → cellular organisms → Bacteria	702	Open in IMG/M
3300031793\|Ga0318548_10014038	All Organisms → cellular organisms → Bacteria	3231	Open in IMG/M
3300031794\|Ga0318503_10199533	All Organisms → cellular organisms → Bacteria	648	Open in IMG/M
3300031796\|Ga0318576_10412194	All Organisms → cellular organisms → Bacteria	638	Open in IMG/M
3300031797\|Ga0318550_10448621	All Organisms → cellular organisms → Bacteria	623	Open in IMG/M
3300031821\|Ga0318567_10548457	All Organisms → cellular organisms → Bacteria	656	Open in IMG/M
3300031860\|Ga0318495_10175995	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	964	Open in IMG/M
3300031879\|Ga0306919_10236098	All Organisms → cellular organisms → Bacteria	1371	Open in IMG/M
3300031879\|Ga0306919_11537439	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	500	Open in IMG/M
3300031890\|Ga0306925_11607946	All Organisms → cellular organisms → Bacteria	631	Open in IMG/M
3300031890\|Ga0306925_11882488	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	569	Open in IMG/M
3300031894\|Ga0318522_10285059	All Organisms → cellular organisms → Bacteria	626	Open in IMG/M
3300031896\|Ga0318551_10164938	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	1214	Open in IMG/M
3300031897\|Ga0318520_10506078	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	746	Open in IMG/M
3300031910\|Ga0306923_12208394	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	552	Open in IMG/M
3300031912\|Ga0306921_11737654	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	673	Open in IMG/M
3300031941\|Ga0310912_10150709	All Organisms → cellular organisms → Bacteria	1754	Open in IMG/M
3300031981\|Ga0318531_10204157	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	891	Open in IMG/M
3300032010\|Ga0318569_10047944	All Organisms → cellular organisms → Bacteria	1839	Open in IMG/M
3300032010\|Ga0318569_10279978	All Organisms → cellular organisms → Bacteria	775	Open in IMG/M
3300032039\|Ga0318559_10313937	All Organisms → cellular organisms → Bacteria	728	Open in IMG/M
3300032051\|Ga0318532_10216577	All Organisms → cellular organisms → Bacteria	679	Open in IMG/M
3300032055\|Ga0318575_10187896	All Organisms → cellular organisms → Bacteria	1035	Open in IMG/M
3300032064\|Ga0318510_10284515	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	686	Open in IMG/M
3300032091\|Ga0318577_10564155	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	541	Open in IMG/M
3300033289\|Ga0310914_11318355	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	624	Open in IMG/M
3300033290\|Ga0318519_10776460	All Organisms → cellular organisms → Bacteria	589	Open in IMG/M
3300033433\|Ga0326726_10680681	All Organisms → cellular organisms → Bacteria → Proteobacteria	992	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	94.50%
Host-Associated	Host-Associated	5.50%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	91.74%
Plants	Host-Associated → Plants	5.50%
Aquatic	Environmental → Aquatic	2.75%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	89.91%
Roots	Host-Associated → Plants → Roots	2.75%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.75%
Sediment	Environmental → Aquatic → Sediment	1.83%
Freshwater	Environmental → Aquatic → Freshwater	0.92%
Peat	Environmental → Terrestrial → Peat	0.92%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	81.65%
Loam	Environmental → Terrestrial → Soil → Loam	8.26%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	2.75%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.83%
Lake	Environmental → Aquatic → Freshwater → Lake	0.92%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.92%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.92%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.92%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	45.87%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	24.77%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.59%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.59%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.67%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.75%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	2.75%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.83%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	1.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.83%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	0.92%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.92%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.92%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.92%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	33.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	11.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	11.93%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	7.34%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.59%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.59%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.67%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.75%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	2.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.83%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	1.83%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	0.92%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.92%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.92%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.92%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.92%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2140918008	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Bog_all	Environmental	Open in IMG/M
2199352025	Soil microbial communities from Rothamsted, UK, for project Deep Soil - DEEP SOIL	Environmental	Open in IMG/M
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006042	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3	Host-Associated	Open in IMG/M
3300006051	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009181	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012937	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t5i015	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300018074	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300020005	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m2	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022534	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026306	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102 (SPAdes)	Environmental	Open in IMG/M
3300026494	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-07-A	Environmental	Open in IMG/M
3300026844	Soil and rhizosphere microbial communities from Laval, Canada - mgLAA (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028714	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_196	Environmental	Open in IMG/M
3300028717	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_158	Environmental	Open in IMG/M
3300028718	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_194	Environmental	Open in IMG/M
3300028755	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356	Environmental	Open in IMG/M
3300028771	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369	Environmental	Open in IMG/M
3300028778	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_142	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031780	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031794	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Bog_all_C_06094760	2140918008	Soil	RGIGFILIRAMEANKVRDIMALTLLLFAFAVTVNTLLLAAEHRMQRK
deepsgr_00593510	2199352025	Soil	MLIRAMEAHKVLDIMALTLLLFGFATAANMLLLAVERRLHRR
ICChiseqgaiiDRAFT_13473722	3300000033	Soil	GYSLVRAMDTHQVLEIMALTFLLFAFAALANGLLLLLERQVR*
INPhiseqgaiiFebDRAFT_1008239291	3300000364	Soil	MLIRAMEAHTVLDIMALTLLLFAFAASANALLLVIERRVHRQ*
INPhiseqgaiiFebDRAFT_1008268022	3300000364	Soil	LIRAMEAHKVLDIVALTLLLFAFAAIANGLLLVVERRVHRQ*
JGI1027J12803_1085270352	3300000955	Soil	DQGLGFMLIRAMEAHTVLDIMALTLLLFAFAASANALLLVIERRVHRQ*
Ga0062593_1024864332	3300004114	Soil	MLIRAMEAHKVLDIMALTLLLFGFATAANMLLLAVERRLHRR*
Ga0062593_1027125111	3300004114	Soil	DRGIGFMLIRAMEANNVLDIMSLTLLLFIFAGVANTILLAVERRVHHGNQ*
Ga0062591_1025864301	3300004643	Soil	LIRAMEAHKVLDIMALTLLLFGFAAAANMLLLAVERRLHRR*
Ga0066388_1040491431	3300005332	Tropical Forest Soil	DQGLGFMLIRAMEAHKVLDIMALTLLLFAFAASANALLLVVERRVHGR*
Ga0008090_102659651	3300005363	Tropical Rainforest Soil	QGLGFMLIRAMEAHKVLDIIALTLLLFAFAAIANALLLVVERRVHRR*
Ga0008090_141679192	3300005363	Tropical Rainforest Soil	LVRAMEAHKVTDIMALTLLLFAFAAGANALLMAVEHRIHRR*
Ga0070713_1005912751	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	GLGFMLIRAMEAHKVLDIVALTLLLFAFAAIANGLLLVVERRVHRR*
Ga0070696_1007206812	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	GFMLIRAMEAHKVLDIMALTLLLFGFAAAANMALLALERRLQRR*
Ga0070696_1013443412	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	GLGFMLIRAMEAHKVLDIMALTLLLFGFAIAANMLLLAVERRLHRR*
Ga0066903_1004905503	3300005764	Tropical Forest Soil	MLIRAMEAHKVLDIIALTLLLFAFAAIANALLLVVERRVHGR*
Ga0066903_1041214531	3300005764	Tropical Forest Soil	RAMEAHKVLDIMALTLLLFAFAASANALLLVVERRVHRQ*
Ga0066903_1057870061	3300005764	Tropical Forest Soil	GFMLIRAMEAHKVLDIMALTLLLFGFAALANALLLAVERGVHPR*
Ga0066903_1076957061	3300005764	Tropical Forest Soil	SDQGLGFILIRAMEAHKVLDIMALTLLLFAFAALANTLLLAVERRMRPQ*
Ga0075368_105125361	3300006042	Populus Endosphere	MLIRAMEQHIVVDIMAVTLFLFAVAGIANALLLTIERRLQWK*
Ga0075364_110812502	3300006051	Populus Endosphere	IRAMEAHKVLDIMALTLLLFAFAALANALLLAVERRVHPR*
Ga0075364_111146691	3300006051	Populus Endosphere	AMEAHKVLDIMALTLLLFGFAALANALLLAVERRVHPG*
Ga0075428_1018153201	3300006844	Populus Rhizosphere	GLGFMLIRAMEAHKVLDIMALTLLLFGFAALANALLLAVERRVHPR*
Ga0099830_101008403	3300009088	Vadose Zone Soil	EAHKVLDIVALTLLLFAFAAIANGLLLVVERRMHQR*
Ga0105243_100156518	3300009148	Miscanthus Rhizosphere	RAMEEHKVLDIMALTLLLFGFATAANMLLLAVERRLHRR*
Ga0114969_103248692	3300009181	Freshwater Lake	GFMLIRAMEAHKVTDIMALAFLLFAAATAIGAGLLAVERRFHG*
Ga0126374_111532112	3300009792	Tropical Forest Soil	AMEAHKVLDIMALTLLLFAFAASANALLLLVERRVHRQ*
Ga0126370_114984181	3300010358	Tropical Forest Soil	QGLGFMLIRAMEAHKVLDIIALTLLLFAFAAIANVLLLVVERRVHRR*
Ga0126377_135794622	3300010362	Tropical Forest Soil	QGLGFMLIRAMEAHKVLDIMALTLLLFAFAALANALLLAIERRVHPR*
Ga0126379_118292152	3300010366	Tropical Forest Soil	EANKVLDIMALTLLLFAFAAVANALLLALERRAHRQ*
Ga0126379_135313362	3300010366	Tropical Forest Soil	LGFMLIRAMEAHKVLDIMALTLLLFAFAASANALLLVVERRVHRQ*
Ga0126383_126797391	3300010398	Tropical Forest Soil	LIRAMEAHKVLDIMALTLLLFAFAALANTLLLAVERHMRPQ*
Ga0126383_130424161	3300010398	Tropical Forest Soil	IRAMEAHKVLDIIALTLLLFAFAAIANALLLVVERRAHRR*
Ga0137416_102749951	3300012927	Vadose Zone Soil	RAMEAHKVLDIMALTLLLFAFAVAANMLLLAVERRVHRR*
Ga0162653_1000185061	3300012937	Soil	QVNKAIEAMEAHKVLDIMALTLLLFGFAIAANMLLLAVERRLHRR*
Ga0164303_112484202	3300012957	Soil	HKVIDIMALTLLLFAFAAAANMALLAVERRVHRQ*
Ga0164307_109372841	3300012987	Soil	GLGFMLIRAMEAHKVLDIMALTLLLFGFAATANMLLLAVERRMHRR*
Ga0164306_116963321	3300012988	Soil	RAMEAHKVLDIMALTLLLFGFATAANMMLLAVERRLHRR*
Ga0164305_101405333	3300012989	Soil	GFMLIRAMEAHKVLDIMALTLLLFGFAIAANMLLLAVERRLHRR*
Ga0137409_108812231	3300015245	Vadose Zone Soil	GFVLIRATESHNVLDIMALTLLLFAFATASNGLLLLLEHQVRRHA*
Ga0182035_103119191	3300016341	Soil	RGIGFILARAMEAHKVTDIMALTLLLFAFAAGANALLMAVDHRIHRH
Ga0182035_121266202	3300016341	Soil	EAHKVLDIMALTLLLFAFAASANALLLLVERRVHRQ
Ga0182032_117075522	3300016357	Soil	FMLIRAMEAHKVLDIMALTLLLFAFAASANALLLVVERRVHRQ
Ga0182034_100627391	3300016371	Soil	AHKVTDIMALTLLLFAFAAGANALLMAVDHRIHRH
Ga0182038_117271742	3300016445	Soil	GFMLIRAMEAHKVLDIMALTLLLFAFAASANALLLVVERRVHRQ
Ga0184640_102730651	3300018074	Groundwater Sediment	MLIRAMEAHKVLDIMALTLLLFAFAAAANMLLLAVERRMHRR
Ga0173479_102444222	3300019362	Soil	QGLGFMLIRAMEAHKVLDIMALTLLLFGFAAAANIALLALERRLHRR
Ga0193697_10915751	3300020005	Soil	RAMEAHKVLDIMALTLLLFGFAIAANMLLLAVERRLHRR
Ga0210400_107490543	3300021170	Soil	AMDANRVPDIMALTLILFTCAATANLLLLALEHRLQRR
Ga0126371_137344681	3300021560	Tropical Forest Soil	MLIRAMENHQVADIMAVTLFLFMIAGIANAGLLAIERRLQWK
Ga0224452_12472801	3300022534	Groundwater Sediment	LIRAMEAHKVLDIMALTLLLFAFAAAANMLLLAVERRMRRRSVFSS
Ga0207663_108968311	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	QGLGFMLIRAMEAHKVLDIMALTLLLFGFAATANMLLLAVERRMHRR
Ga0207678_102254881	3300026067	Corn Rhizosphere	EAHKVLDIMALTLLLFGFATAANMLLLAVERRLHRR
Ga0209468_10951431	3300026306	Soil	EAHKVLDIVALTLLLFAFAAIANGLLLVVERRVHRQ
Ga0257159_10694842	3300026494	Soil	EAHKVLDIVALTLLLFAFSAIANGLLLVVERRVHRQ
Ga0208760_1021832	3300026844	Soil	AMEAHKVLDIMALTLLLFAFAAAANMLLLAVERRLHRR
Ga0209488_101109214	3300027903	Vadose Zone Soil	MEAHKVIDIMALTLLLFAFAAAANMLLLAVERRMHTQ
Ga0307309_102067341	3300028714	Soil	FMLIRAMEAHKVLDIMALTLLLFAFAAAANMLLLAVERRMRRR
Ga0307298_100609882	3300028717	Soil	AHKVLDIMALTLLLFAFAAAANMLLLAVERRMRRR
Ga0307307_101586511	3300028718	Soil	LIRAMEAHKVLDIMALTLLLFAFAAAANMLLLAVERRMRRR
Ga0307316_102213981	3300028755	Soil	LGFILIRAMEAHKVLDIMALTLLLFAFAAFANALLLVVERRVHRR
Ga0307320_102258892	3300028771	Soil	IRAMEAHKVLDIMALTLLLFGFAIAANMLLLAVERRLHRR
Ga0307288_100808332	3300028778	Soil	QGLGFMLIRAMEAHKVLDIMALTLLLFGFAAAANMLLLAVERRLHRR
Ga0307302_104324182	3300028814	Soil	MEAHNVLDIMALTLLLFAFAAFANALLLAVERRMHRR
Ga0318534_100570411	3300031544	Soil	LGFMLIRAMEAHKVLDIIALTLLLFAFAAIANALLLVVERRVHRR
Ga0318541_106788081	3300031545	Soil	MLIRAMEAHKVLDIMALTLLLFAFAASANALLLVVERRVHRQ
Ga0310887_106665862	3300031547	Soil	IRAMEAHKVLDIMALTLLLFGFATAANMLLLAVERRRHRR
Ga0318571_100562462	3300031549	Soil	IRAMEAHKVLDIIALTLLLFAFAAIANVLLLVVERRVHRR
Ga0318571_102735912	3300031549	Soil	GLGFMLIRAMEAHKVLDIVALTLLLFAFAAIANGLLLVAERRVHRR
Ga0318515_101094923	3300031572	Soil	QGLGFMLIRAMEAHKVLDIVALTLLLFAFAAIANGLLLVVERRVHRR
Ga0318574_104567353	3300031680	Soil	LIRAMEAHKVLDIIALTLLLFAFAAIANALLLVVERRVHRR
Ga0318574_107690402	3300031680	Soil	DQGLGFMLIRAMEAHKVLDIVALTLLLFAFAAIANGLLLVVERRVHRQ
Ga0318572_100894901	3300031681	Soil	DQGLGFMLIRAMEAHKVLDIIALTLLLFAFAAIANVLLLVVERRVHRR
Ga0318572_106887822	3300031681	Soil	AMEAHKVLDIIALTLLLFAFAAIANALLLVVERRVHRR
Ga0306917_106640612	3300031719	Soil	SDQGLGFMLIRAMEAHKVLDIVALTLLLFAFAAIANGLLLVVERRVHRQ
Ga0318500_100699213	3300031724	Soil	MEAHKVLDIMALTLLLFAFAASANSLLLVVERRVHRQ
Ga0306918_101575734	3300031744	Soil	EAHKVTDIMALTLLLFAFAAGANALLMAVDHRIHRH
Ga0318537_100360751	3300031763	Soil	FMLIRAMEAHKVLDIIALTLLLFAFAAIANVLLLVVERRVHRR
Ga0318554_100513314	3300031765	Soil	AHKVLDIIALTLLLFAFAAIANALLLVVERRVHRR
Ga0318554_100843363	3300031765	Soil	ASDQGLGFMLIRAMEAHKVLDIIALTLLLFAFAAIANVLLLVVERRVHRR
Ga0318526_102639841	3300031769	Soil	AMEAHKVLDIVALTLLLFAFAAIANGLLLVVERRVHRR
Ga0318508_11325462	3300031780	Soil	SDQGLGFMLIRAMEAHKVLDIIALTLLLFAFAAIANVLLLVVERRVHRR
Ga0318548_100140381	3300031793	Soil	MLIRAWEAHKVLDIIALTLLLFAFAAIANVLLLVVERRVHRR
Ga0318503_101995333	3300031794	Soil	ASDQGLGFMLIRAMEAHKVLDIIALTLLLFAFAAIANALLLVVERRVHRR
Ga0318576_104121941	3300031796	Soil	RAMEAHKVLDIIALTLLLFAFAAIANALLLVVERRVHRR
Ga0318550_104486211	3300031797	Soil	FMLIRAMEAHKVLDIIALTLLLFAFAAIANALLLVVERRVHRR
Ga0318567_105484573	3300031821	Soil	QGLGFMLIRAMEAHKVLDIIALTLLLFAFAAIANALLLVVERRVHRR
Ga0318495_101759951	3300031860	Soil	MEAHKVLDIIALTLLLFAFAAIANALLLVVERRVHRR
Ga0306919_102360983	3300031879	Soil	AHKVLDIVALTLLLFAFAAIANGLLLVVERRVHRR
Ga0306919_115374392	3300031879	Soil	GLGFMLIRAMEAHKVLDIMALTLLLFAFAASANALLLVVERRVHRQ
Ga0306925_116079461	3300031890	Soil	GLGFMLIRAMEAHKVLDIVALTLLLFAFAAIANGLLLVVERRVHRR
Ga0306925_118824882	3300031890	Soil	GLGFMLIRAMEAHKVLDIVALTLLLFAFAAIANGLLLVVERRVHRQ
Ga0318522_102850592	3300031894	Soil	MLIRAMEAHKVLDIIALTLLLFAFAAIANALLLVVERRVHRR
Ga0318551_101649381	3300031896	Soil	DQGLGFMLIRAMEAHKVLDIMALTLLLFAFAASANSLLLVVERRVHRQ
Ga0318520_105060782	3300031897	Soil	LARAMEAHKVTDIMALTLLLFAFAAGANALLMAVDHRIHRH
Ga0306923_122083941	3300031910	Soil	SDQGIGFILIRAMEAHKVTDIMALTLLLFAFAAVANMLLLGLERHTHRR
Ga0306921_117376542	3300031912	Soil	MEEHKVTDIMALTLLLFAFAASANALLMAVEHRIHRH
Ga0310912_101507091	3300031941	Soil	AMEAHKVLDIIALTLLLFAFAAIANVLLLVVERRVHRR
Ga0318531_102041571	3300031981	Soil	EAHKVLDIIALTLLLFAFAAIANALLLVVERRVHRR
Ga0318569_100479443	3300032010	Soil	RAMEAHKVLDIVALTLLLFAFAAIANGLLLVVERRVHRR
Ga0318569_102799781	3300032010	Soil	LGFMLIRAMEAHKVLDIIALTLLLFAFAAIANVLLLVVERRVHRR
Ga0318559_103139371	3300032039	Soil	MLIRAMEAHKVLDIVALTLLLFAFAAIANGLLLVVERRVHRR
Ga0318532_102165771	3300032051	Soil	SDQGLGFMLIRAMEAHKVLDIIALTLLLFAFAAIANALLLVVERRVHRR
Ga0318575_101878963	3300032055	Soil	DQGLGFMLIRAMEAHKVLDIIALTLLLFAFAAIANALLLVVERRVHRR
Ga0318510_102845151	3300032064	Soil	DRGIGFILARAMEAHKVTDIMALTLLLFAFAAGANALLMAVDHRIHRH
Ga0318577_105641551	3300032091	Soil	GLGFMLIRAMEAHKVLDIMALTLLLFAFAASANALLLLVERRVHRQ
Ga0310914_113183551	3300033289	Soil	IGFILARAMEAHKVTDIMALTLLLFAFAAGANALLMAVDHRIHRH
Ga0318519_107764603	3300033290	Soil	RAMEAHKVLDIIALSLLLFAFAAIANALLLVVERRVHRR
Ga0326726_106806811	3300033433	Peat Soil	GFILIRAMEAHKVLDIMALTLLLFAFAAAANMLLLAVERRVHH

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F088455

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences