Metagenome / Metatranscriptome Family F088466

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F088466
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	83 residues
Representative Sequence	VTAAAGVVGGVVLGTKLNHKPKKVLGMPIPGTGSGLTGVAKQVKKSGKQAKKVGKQIGELTEEVRAARKKAEDVGKAIS
Number of Associated Samples	73
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	28.85 %
% of genes near scaffold ends (potentially truncated)	46.79 %
% of genes from short scaffolds (< 2000 bps)	89.91 %
Associated GOLD sequencing projects	69
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.24

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (81.651 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (20.183 % of family members)
Environment Ontology (ENVO)	Unclassified (26.606 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (48.624 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 54.21% β-sheet: 3.74% Coil/Unstructured: 42.06%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.24
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.24
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF00353	HemolysinCabind	5.50
PF00149	Metallophos	2.75
PF12680	SnoaL_2	1.83
PF03824	NicO	0.92
PF00072	Response_reg	0.92
PF02817	E3_binding	0.92
PF05532	CsbD	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG0508	Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component	Energy production and conversion [C]	0.92
COG3237	Uncharacterized conserved protein YjbJ, UPF0337 family	Function unknown [S]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.65 %
All Organisms	root	All Organisms	18.35 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.65 %
cellular organisms	root	All Organisms → cellular organisms	17.43 %
Viruses	superkingdom	All Organisms → Viruses	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.65 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	17.43 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.65 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	12.84 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.92 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.65 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	12.84 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.92 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.65 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	8.26 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.92 %
unclassified Planctomycetota	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota	0.92 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.65 %
Thermoleophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales	3.67 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	3.67 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.92 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.92 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.65 %
Thermoleophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae	3.67 %
Conexibacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae	1.83 %
Solirubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae	0.92 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.92 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.92 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.65 %
unclassified Thermoleophilaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae	3.67 %
Conexibacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter	1.83 %
Solirubrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	0.92 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.92 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.92 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.65 %
Thermoleophilaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	3.67 %
Conexibacter arvalis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter arvalis	1.83 %
Solirubrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	0.92 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.92 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.92 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_105732312	Not Available	1614	Open in IMG/M
3300000955\|JGI1027J12803_100200309	Not Available	511	Open in IMG/M
3300001686\|C688J18823_10921480	All Organisms → cellular organisms → Bacteria	554	Open in IMG/M
3300004153\|Ga0063455_100106710	All Organisms → Viruses → Predicted Viral	1170	Open in IMG/M
3300004463\|Ga0063356_106186169	Not Available	513	Open in IMG/M
3300005345\|Ga0070692_10186388	All Organisms → cellular organisms → Bacteria	1206	Open in IMG/M
3300005578\|Ga0068854_100198389	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1576	Open in IMG/M
3300006844\|Ga0075428_100331028	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	1636	Open in IMG/M
3300006845\|Ga0075421_100240621	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2223	Open in IMG/M
3300006846\|Ga0075430_100050731	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3497	Open in IMG/M
3300006847\|Ga0075431_102238221	Not Available	501	Open in IMG/M
3300006853\|Ga0075420_100582446	Not Available	966	Open in IMG/M
3300009100\|Ga0075418_12550570	Not Available	558	Open in IMG/M
3300009147\|Ga0114129_10691174	Not Available	1312	Open in IMG/M
3300009147\|Ga0114129_11597478	Not Available	798	Open in IMG/M
3300009176\|Ga0105242_12368927	Not Available	578	Open in IMG/M
3300009789\|Ga0126307_10165715	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	1771	Open in IMG/M
3300009789\|Ga0126307_10301506	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	1289	Open in IMG/M
3300009789\|Ga0126307_11610416	Not Available	527	Open in IMG/M
3300009840\|Ga0126313_10322409	Not Available	1212	Open in IMG/M
3300009840\|Ga0126313_11625702	Not Available	538	Open in IMG/M
3300010036\|Ga0126305_10019007	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	3588	Open in IMG/M
3300010037\|Ga0126304_10016923	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	4092	Open in IMG/M
3300010037\|Ga0126304_11131876	Not Available	536	Open in IMG/M
3300010039\|Ga0126309_10077376	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	1662	Open in IMG/M
3300010039\|Ga0126309_10652406	Not Available	669	Open in IMG/M
3300010040\|Ga0126308_10111346	Not Available	1690	Open in IMG/M
3300010040\|Ga0126308_11228842	Not Available	531	Open in IMG/M
3300010042\|Ga0126314_10130375	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	1737	Open in IMG/M
3300010044\|Ga0126310_10099797	Not Available	1756	Open in IMG/M
3300010044\|Ga0126310_10720605	Not Available	758	Open in IMG/M
3300010044\|Ga0126310_11292619	Not Available	590	Open in IMG/M
3300010045\|Ga0126311_11307404	Not Available	603	Open in IMG/M
3300010137\|Ga0126323_1014836	Not Available	524	Open in IMG/M
3300010145\|Ga0126321_1065923	Not Available	948	Open in IMG/M
3300010145\|Ga0126321_1074081	Not Available	1226	Open in IMG/M
3300010145\|Ga0126321_1114558	Not Available	530	Open in IMG/M
3300010145\|Ga0126321_1185974	Not Available	620	Open in IMG/M
3300010145\|Ga0126321_1204947	Not Available	1376	Open in IMG/M
3300010145\|Ga0126321_1277501	Not Available	642	Open in IMG/M
3300010145\|Ga0126321_1380502	Not Available	533	Open in IMG/M
3300010145\|Ga0126321_1412742	Not Available	612	Open in IMG/M
3300010145\|Ga0126321_1417975	Not Available	628	Open in IMG/M
3300010166\|Ga0126306_10118390	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1935	Open in IMG/M
3300010166\|Ga0126306_11886016	Not Available	501	Open in IMG/M
3300010371\|Ga0134125_10755774	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1071	Open in IMG/M
3300010399\|Ga0134127_11726992	Not Available	701	Open in IMG/M
3300010870\|Ga0102750_10408070	Not Available	623	Open in IMG/M
3300011332\|Ga0126317_10033999	Not Available	915	Open in IMG/M
3300011332\|Ga0126317_10401972	Not Available	552	Open in IMG/M
3300011332\|Ga0126317_10744355	Not Available	986	Open in IMG/M
3300011332\|Ga0126317_10998941	Not Available	667	Open in IMG/M
3300011333\|Ga0127502_10235338	Not Available	1100	Open in IMG/M
3300012212\|Ga0150985_100985843	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter arvalis	788	Open in IMG/M
3300012212\|Ga0150985_103828090	Not Available	732	Open in IMG/M
3300012212\|Ga0150985_112329966	Not Available	1185	Open in IMG/M
3300012212\|Ga0150985_113702134	Not Available	666	Open in IMG/M
3300012212\|Ga0150985_123040524	Not Available	1321	Open in IMG/M
3300012469\|Ga0150984_109104694	Not Available	980	Open in IMG/M
3300012469\|Ga0150984_114461996	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter arvalis	774	Open in IMG/M
3300012469\|Ga0150984_114608763	Not Available	590	Open in IMG/M
3300012897\|Ga0157285_10361647	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	512	Open in IMG/M
3300012908\|Ga0157286_10138010	Not Available	763	Open in IMG/M
3300012914\|Ga0157297_10086631	Not Available	910	Open in IMG/M
3300012961\|Ga0164302_10612617	Not Available	791	Open in IMG/M
3300013307\|Ga0157372_11949992	Not Available	675	Open in IMG/M
3300015200\|Ga0173480_10334391	Not Available	858	Open in IMG/M
3300015373\|Ga0132257_100163725	All Organisms → cellular organisms → Bacteria	2614	Open in IMG/M
3300015374\|Ga0132255_100110864	All Organisms → cellular organisms → Bacteria	3748	Open in IMG/M
3300018422\|Ga0190265_12188551	Not Available	656	Open in IMG/M
3300018469\|Ga0190270_13101099	Not Available	526	Open in IMG/M
3300020080\|Ga0206350_11066864	Not Available	544	Open in IMG/M
3300021184\|Ga0196959_10055908	Not Available	830	Open in IMG/M
3300027880\|Ga0209481_10228686	Not Available	933	Open in IMG/M
3300027909\|Ga0209382_10375604	Not Available	1587	Open in IMG/M
3300027909\|Ga0209382_10652841	Not Available	1138	Open in IMG/M
3300028554\|Ga0302047_10837458	Not Available	623	Open in IMG/M
3300028707\|Ga0307291_1121652	Not Available	657	Open in IMG/M
3300028771\|Ga0307320_10397428	Not Available	553	Open in IMG/M
3300028881\|Ga0307277_10296267	Not Available	717	Open in IMG/M
3300028885\|Ga0307304_10427201	Not Available	601	Open in IMG/M
3300030785\|Ga0102757_10039847	Not Available	762	Open in IMG/M
3300030785\|Ga0102757_11447970	Not Available	644	Open in IMG/M
3300030829\|Ga0308203_1067589	Not Available	569	Open in IMG/M
3300030830\|Ga0308205_1040164	Not Available	598	Open in IMG/M
3300030902\|Ga0308202_1026725	Not Available	947	Open in IMG/M
3300030903\|Ga0308206_1029508	Not Available	988	Open in IMG/M
3300031039\|Ga0102760_10019571	Not Available	1064	Open in IMG/M
3300031039\|Ga0102760_10028394	Not Available	1161	Open in IMG/M
3300031054\|Ga0102746_10944988	Not Available	1246	Open in IMG/M
3300031054\|Ga0102746_11022311	Not Available	1040	Open in IMG/M
3300031058\|Ga0308189_10202828	Not Available	720	Open in IMG/M
3300031091\|Ga0308201_10021195	Not Available	1365	Open in IMG/M
3300031091\|Ga0308201_10030561	Not Available	1219	Open in IMG/M
3300031091\|Ga0308201_10097029	Not Available	844	Open in IMG/M
3300031091\|Ga0308201_10348750	Not Available	542	Open in IMG/M
3300031092\|Ga0308204_10008793	Not Available	1765	Open in IMG/M
3300031548\|Ga0307408_101309473	Not Available	679	Open in IMG/M
3300031731\|Ga0307405_11480476	Not Available	596	Open in IMG/M
3300031903\|Ga0307407_10324437	Not Available	1082	Open in IMG/M
3300031995\|Ga0307409_102908282	Not Available	506	Open in IMG/M
3300032002\|Ga0307416_100562297	Not Available	1215	Open in IMG/M
3300032005\|Ga0307411_11605001	Not Available	600	Open in IMG/M
3300032013\|Ga0310906_10528642	Not Available	802	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	70.64%
Host-Associated	Host-Associated	29.36%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	55.96%
Plants	Host-Associated → Plants	29.36%
Aquatic	Environmental → Aquatic	14.68%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	55.96%
Rhizosphere	Host-Associated → Plants → Rhizosphere	21.10%
Freshwater	Environmental → Aquatic → Freshwater	13.76%
Rhizoplane	Host-Associated → Plants → Rhizoplane	8.26%
Sediment	Environmental → Aquatic → Sediment	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	52.29%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	18.35%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	13.76%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	6.42%
Loam	Environmental → Terrestrial → Soil → Loam	2.75%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.75%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.92%
Sand	Environmental → Terrestrial → Soil → Sand	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	41.28%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	18.35%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	13.76%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	8.26%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	6.42%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.75%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.83%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.92%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.92%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	20.18%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	18.35%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	13.76%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	11.01%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	8.26%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	5.50%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	4.59%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	2.75%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.83%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.83%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.83%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.92%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	0.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.92%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001686	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010137	Soil microbial communities from California, USA to study soil gas exchange rates - SR-CA-SC1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010145	Soil microbial communities from Hawaii, USA to study soil gas exchange rates - KP-HI-INT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010870	Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines Pi 3A (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011332	Soil microbial communities from California, USA to study soil gas exchange rates - SR-CA-SC2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300011333	Cornfield soil microbial communities from Stanford, California, USA - CI-CA-CRN metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012897	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S074-202C-1	Environmental	Open in IMG/M
3300012908	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S089-202R-1	Environmental	Open in IMG/M
3300012914	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S028-104C-2	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018066	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300020080	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300021184	Soil microbial communities from Anza Borrego desert, Southern California, United States - S1+v_20	Environmental	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028554	Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines Pi 3A (Eukaryote Community Metatranscriptome) (v9)	Environmental	Open in IMG/M
3300028707	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_148	Environmental	Open in IMG/M
3300028771	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300030785	Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PI 5C (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030829	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_357 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030830	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_368 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030902	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_356 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030903	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_369 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030905	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_204 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031039	Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PI 6C (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031054	Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PI 1C (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031058	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031091	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_355 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031092	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_367 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031903	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1	Host-Associated	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032005	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1	Host-Associated	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1057323122	3300000364	Soil	VTAAAGVVGGVVLGTKLNHKPKKVLGMPIPGTGSGLTGVAKQVKKSGKQAKKVGKQIGELTEEVRAARKKAEDVGKAIS*
JGI1027J12803_1002003092	3300000955	Soil	GSNGSSKAAVVTGVVTAAAGVVGGVVLGTKLNHKPKKVLGMPIPGTGSGLTGVAKQVKKSGKQAKKVGKQIGELTEEVRAARKKAEDVGKAIS*
C688J18823_109214801	3300001686	Soil	AAVITGVATAAAGLVGGVVLGKRLNGKPTKVLGVSIPGTGTGLGGVAKQVKKAGKQLQKTSKQIADLTDEVRSARQKAEDVGKAIS*
Ga0063455_1001067102	3300004153	Soil	VVTAAAGVVGGVVLGKKLNGGPKKVLGMPIPGTGSGLSGVTKQVKKSGKQAKKVGKQIGELTEEVRAARKKAEDVAKVIS*
Ga0063356_1061861692	3300004463	Arabidopsis Thaliana Rhizosphere	VTGVATAAAGLVGGVVLGTRLGSKPKKVLGMKIPGTGSGLIGVAKQVKKSGKQAKKVGKQIGELTEEVRAARKKAEDVGKAIS*
Ga0070692_101863882	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	VTGVVTAAAGVIGGVVLGSKLNNKPKKVLGMPIPGTGTGLTGVAKQVKKSGKQAKKVGKQIGELTEEVRAARKKAEDVGKAIS*
Ga0068854_1001983892	3300005578	Corn Rhizosphere	VTGVVTAAAGVIGGVVLGSKLNNKPKKVLGMPIPGTGTGLTGVAKQVKKSGKQAKKVGKQIGELTEEVRAARKKAEEVGRAIS*
Ga0075428_1003310282	3300006844	Populus Rhizosphere	VVLGKKLNGGPKKVLGMPIPGTGSGLTGVAKQVKKSGKQAKKVGKQIGELTEEVRAARKKAEDVAKVIS*
Ga0075421_1002406212	3300006845	Populus Rhizosphere	VTGVATAAAGLVGGVVLGTRLGSKPKKVLGMKIPGTGAGLTGVAKQVKKAGKQIGKTSKQIGELTDEVRSARKKAEDVGKAIS*
Ga0075430_1000507314	3300006846	Populus Rhizosphere	VVLGKKLNGGPKKVLGMPIPGTGSGLTGVAKQVKKSGKQAKKVGKQIGELTEEVRAARKKAEDVGKAIS*
Ga0075431_1022382212	3300006847	Populus Rhizosphere	GSTSSRAGSNGSSKAAVVTGVVTAAAGVVGGVVLGKKLNGGPKKVLGMPIPGTGSGLTGVAKQVKKSGKQAKKVGKQIGELTEEVRAARKKAEDVAKVIS*
Ga0075420_1005824461	3300006853	Populus Rhizosphere	TGAAGLIGGVVLGTRLGSKPKKVLGMKIPGTGAGMTGVAKQVKKSGKQAKKVGKQIGELTEEVRAARKKAEDVGKAIS*
Ga0075418_125505701	3300009100	Populus Rhizosphere	VATTAAGIVGGVVLGKSLGNRPKKVLGMKVPGTGGGLDGVAKQVKKAGKQLQKTSKQVAELTDEVRSARQKAEDVGKA
Ga0114129_106911742	3300009147	Populus Rhizosphere	GTKLNHKPKKVLGMPIPGTGSGLTGVAKQVKKSGKQAKKVGKQIGELTEEVRAARKKAEDVGKAIS*
Ga0114129_115974783	3300009147	Populus Rhizosphere	SNGSSKAAVVTGVVTAAAGVVGGVVLGKKLNGGPKKVLGMPIPGTGSGLTGVAKQVKKSGKQAKKVGKQIGELTEEVRAARKKAEDVGKAIS*
Ga0111538_124940641	3300009156	Populus Rhizosphere	KKLNGGPKKVLGMPIPGTGSGLTGVAKQVKKSGKQAKKVGKQIGELTEEVRAARKKAEDVAKVIS*
Ga0105242_123689272	3300009176	Miscanthus Rhizosphere	VTAAAGVIGGVVLGSKLNNKPKKVLGMPIPGTGTGLTGVAKQVKKSGKQAKKVGKQIGELTEEVRAARKKAEDVGKAIS*
Ga0126307_101657153	3300009789	Serpentine Soil	VTGVATAAAGLVEGVVLGTRLGSKPKKVLGVKIPGTGAGLNGVAKQVKKTGKQFKKASKQVAELADEVRTARKKAEDVGNAIS*
Ga0126307_103015063	3300009789	Serpentine Soil	VIAGVATAAAGLVGGVVLGTRLGGKPKKILGMKVPGSGAGLGDVAKQVKKAGKQFKKTSKQISDLTDEVRTARKKAEDIGKAIS*
Ga0126307_116104161	3300009789	Serpentine Soil	VTGVATAAAGLVGGVALGTRLGNKPKKVLGVKIPGTGAGLNGVAKQVKKTGKQFKKTSKQVAELTDEVRAARKKAEDVGKAIS*
Ga0126313_103224091	3300009840	Serpentine Soil	VVTAAAGLVGGVVLGQRLGGRPKKVLGVRIPGTGHGLDDVVKQLKKAGKHAKNAGKQFGDLTDEVRTARKKAEDVGKAIS*
Ga0126313_116257022	3300009840	Serpentine Soil	VTGVATAAAGLVEGVVLGTRLGGKPKKVLGVKIPGTGAGLNGVAKQVKKTGKQFKKASKQVAELADEVRTARKKAEDAGKAIS*
Ga0126305_100190075	3300010036	Serpentine Soil	LNGSSKAAVVTGVATAAAGLVEGVVLGTRLGSKPKKVLGVKIPGTGAGLNGVAKQVKKTGKQFKKASKQVAELADEVRTARKKAEDVGNAIS*
Ga0126304_100169234	3300010037	Serpentine Soil	LNGSSKAAVVTGVATAAAGLVEGVVLGTRLGSKPKKVLGVKIPGTGAGLNGVAKQVKKTGKQFKKTSKQVAELTDEVRAARKKAEDVGKAIS*
Ga0126304_111318761	3300010037	Serpentine Soil	AAGLVEGVVLGTRLGSKPKKVLGVKIPVTGAGLNGVAKQVKKTGKQFKKASKQVAELADEVRTARKKAEDVGNAIS*
Ga0126309_100773763	3300010039	Serpentine Soil	VIAGVATAAAGLVGGVVLGTRLGGKPKKVLGMKIPGTGAGFDGVAKQVKKTGKQVKKASKQVADLTDEVRSARKKAEDIGKAIS*
Ga0126309_106524062	3300010039	Serpentine Soil	SSSSGNGSSKAPVIAGVATAAAGLVGGVVLGTRLGGKPKKVLGMKIPGTGAGFDGVAKQVKKTGKQVKKASKQVADLTDEVRSARKKAEDIGKAMS*
Ga0126308_101113463	3300010040	Serpentine Soil	MLGTRLNSKPKKVLGMPIPGTGRGLDGVAKQVKKSGKQAKKVGKQAKNVGKQIGELTEEVRTARQKAEDIGKAIS*
Ga0126308_112288421	3300010040	Serpentine Soil	SNGSGNGSKVAVVTGVATAAAGLVGGVVLGRSLGNKPKKVLGMKVPGTGAGLDGLAKQVKKAGKQFKKTSKQVADLTDEVRTARKKAEDVGKAIS*
Ga0126314_101303752	3300010042	Serpentine Soil	VTGVATAAAGLVGGVALGTRLGSKPKKVLGVKIPGTGAGLNGVAKQVKKTGKQFKKTSKQVAELTDEVRTARKKAEDVGKAIS*
Ga0126310_100997973	3300010044	Serpentine Soil	VTAAAGVVGGVVLGTKLNHKPKKLLGMPIPGTGKGLDGVAKQVKKSGKQAAKVGKQLGELTEEVRAARQKAEDVGKAFS*
Ga0126310_107206052	3300010044	Serpentine Soil	VATAAAGLVGGLVLGKRLNGKPKRVLGMPIPGTGTGLDGVAKQVKKAGKQLQKTSKQIGELTDEVRTARKKAEGVGKAIS*
Ga0126310_109647022	3300010044	Serpentine Soil	SSRRSGGSGGGKASTQNGGSSKAPVVTGLVTGAAGLVGGAVLATRLGKKPKKVLGIPVPGTGGGIDGLAKQVGKAGKQFKKASKQVSELTDEVRAAREKAEKVGKVIS*
Ga0126310_112926192	3300010044	Serpentine Soil	VTGVVTAAAGVVGGVLLGTKLNHKPKKVLGMPIPGTGRGLDGVAKQVKKSGKQAKKVGKQIGELTEEVRAARKKAEDVGKAIS*
Ga0126311_113074042	3300010045	Serpentine Soil	VATAAAGLVGGLVLGKRLNGKPKRVLGMPIPGTGTGLDGVAKQVKKAGKQLQKTSKQIGELTDEVRTARKKAEGVGKAIS
Ga0126323_10148361	3300010137	Soil	LVGGVVLGRRLNGKPKKVLGVRVPGTGTGLDGVAKQVKKAGKQLQKTSKQIGELTDEVRTARKKAEGVGKAIS*
Ga0126321_10659232	3300010145	Soil	VILGTKLNNKPKKVLGMPIPGTGRGLDGVAKQVKKSGKQAKKVGKQIGELTEEVRAARQKAEDVGKAIS*
Ga0126321_10740812	3300010145	Soil	MTAAAGLAGGVVLGTRLNRKPRKVLGMPVPGTGRGLDGVAKQVKKAGKQIGQTGKQIAELTDEVRAARQKAEDVGKAIS*
Ga0126321_11145582	3300010145	Soil	VRSSNANGSSKAAVAAGIATGAAGLIGGVVLGTRFGNKPKKVLGVKVPGTGSGLTGVAKQVKKSGKQAKKVGKQIGELTEE
Ga0126321_11859741	3300010145	Soil	VVTAAAGVVGGVLLSTKLNNKPKKVLGMPIPGTGRGLDGVAKQIKKSGKQAKKAGKNAKKIGEQIGELTDEVRAARQKAEDVGKVFS*
Ga0126321_12049472	3300010145	Soil	VTGVATAAAGLVGGVVLGRSLGNKPKKVLGMKIPGTGGGFDGVAKQVKKTWKQLKKTSKQVADLTDEVRTARKKAEDVGKAIS*
Ga0126321_12775011	3300010145	Soil	VVTAAAGVVGGVLLSTKLNNKPKKVLGMPIPGTGRGLDGIAKQVKKSGKQAKRAGKQAKKIGEQIGELTDEVRAARQKAEDVGKVFS*
Ga0126321_13805022	3300010145	Soil	AAGLVGGVVLGQRLGHKPKRVLGMKIPGTGNGLDGVAKQVKKAGKQLGRTSKQISELTEEVRAAKKKAEDVGKAIS*
Ga0126321_14127422	3300010145	Soil	VTAAAGVVGGVLLGTKLNNKPKKVLGVKIPGTGSGLTGVAKQVKKSGKQAKKVGKQIGELTEEVRAARQKAED
Ga0126321_14179751	3300010145	Soil	ARRAAANGSSMTAVVTGVATAAAGLVGGVVLGKRLKGKPKKVLGVPIPGTGNGLNGVAKQVKKAGKQFNKTAKQIGELTDEVRTARKKAEDVGKAIS*
Ga0126306_101183902	3300010166	Serpentine Soil	LNGSSKAAVVTGVATAAAGLVEGVVLGTRLGSKPKKVLGVKIPGTGAGLNGVAKQVKKTGKQFKKTSKQVAELTDEVRAARKKAEDAGKAIS*
Ga0126306_118860162	3300010166	Serpentine Soil	VTGVATAAAGLVGGVALGTRLGNKPKKVLGVKIPGTGAGLNGVAKQVKKTGKQFKKTSKQVAELTDEVRAAR
Ga0134125_107557742	3300010371	Terrestrial Soil	VALITGIATAAAGLVGGVVLGSRLNNKPKKVLGVSVPGTGAGLSGVAKQVKKAGKHAKKAGQQIGELTDEVRAARQKAEDVGRAIS*
Ga0134127_117269922	3300010399	Terrestrial Soil	VVLGKRLNGKPKKVLGMPIPGTGSGLTGVAKQVKKSGKQAKKVGKQIGELTEEVRAARKKAEDVGKAIS*
Ga0102750_104080702	3300010870	Soil	AKPKKVLGIPVPGTGNSLAKQIGKSGKQAAKAGKQIGELTAEIRTARRKAEEVSKAIS*
Ga0126317_100339992	3300011332	Soil	VTAAAGVVGGVVLGKKLNGGPKKVLGMPIPGTGKGLDGIAKQVKKSGKQAKKVGKQIGELTEEVRAAKKKAEDVGKAIS*
Ga0126317_104019721	3300011332	Soil	VVTAAAGVVGGVVLGTKLNHKPKKVLGMPIPGTGRGLDGVAKQVKKSGKQAKKVGKQIGELTEEVRAARQKAEDVG
Ga0126317_107443552	3300011332	Soil	VTGVVTAAAGVVGGVLLGTKLNHKPKKVLGMPIPGTGRGLDGVAKQVKKSGKQAKKVGKQIGELTEEVRAARQKAEDVGKAIS*
Ga0126317_109989412	3300011332	Soil	VVTGVATAAAGLVGGVVLGKKLNGGPKKVLGMPIPGTGRGLDGIAKQVKKSGKQAKKVGKQIGELTEEVRAARKKAEDVGKAIS*
Ga0127502_102353382	3300011333	Soil	VTAAAGVVGGVVLGTKLNSKPKKVLGVKIPGTGAGMTGVAKQVKKSGKQAKKVGKQIGELTEEVRAARKKAEDVGKAIS*
Ga0150985_1009858432	3300012212	Avena Fatua Rhizosphere	VLFRSLVTGVATAAAGLVGGVVLGKRLNGKPTKVLGVSIPGTGTGLGGVAKQVKKAGKQLQKTSKQIADLTDEVRSARQKAEDVGKAIS*
Ga0150985_1038280902	3300012212	Avena Fatua Rhizosphere	LSAARSSSSNGTSKAALVTGVATAAAGLVGGVVLGTRLNNKPKKVLGMPIPGTGAGLSGVAKQVKKASKNAKKAGKQIGELTEEVRAARKKAEDVGKAISYEIAGTGADGRIND*
Ga0150985_1123299662	3300012212	Avena Fatua Rhizosphere	VLGTRINNKPKKVLGVSIPGTGSGLTGVAKQVKKAGKHAKKAGKQIGELTDEVRDARQKAEDIGKAIS*
Ga0150985_1137021342	3300012212	Avena Fatua Rhizosphere	VTAAAGVVGGVVLGKKLNGGPKKVLGMPIPGTGSGLSGVTKQVKKSGKQAKKVGKQIGELTEEVRAARKKAEDVAKVIS*
Ga0150985_1230405243	3300012212	Avena Fatua Rhizosphere	VLGTKLNNKPKKLLGMPIPGTGKGLDGVAKQVKKSGKQAKKVGKQIGELTEEVRAARKKAEDVGKAIS*
Ga0150984_1091046942	3300012469	Avena Fatua Rhizosphere	GGSSSSNGSSKAAVVTGVVTAAAGVVGGVVLGKKLNGGPKKVLGMPIPGTGSGLSGVTKQVKKSGKQAKKVGKQIGELTEEVRAARKKAEDVAKVIS*
Ga0150984_1144619961	3300012469	Avena Fatua Rhizosphere	LGKRLNGKPTKVLDVSIPGTGTGLGGVAKQVKKAGKQLQKTSKQIADLTDEVRSARQKAEDVGKAIS*
Ga0150984_1146087631	3300012469	Avena Fatua Rhizosphere	RSLVTGVATAAAGLVGGVVLGTRLNNKPKKVLGMPIPGTGAGLSGVAKQVKKASKNAKKAGKQIGELTEEVRAARKKAEDVGKAIS*
Ga0157285_103616471	3300012897	Soil	MRRRRGAAAAAAGVIGGVVLGSKLNNKPKKVLGMPIPGTGTGLTGVAKQVKKSGKQAKKVGKQIGELTEEVRAARKKAEDVGKAIS*
Ga0157286_101380101	3300012908	Soil	SPNSSNGSSKAAVVTGVVTAAAGVIGGVVLGSKLNNKPKKVLGMPIPGTGTGLTGVAKQVKKSGKQAKKVGKQIGELTEEVRSARKKAEDVGKAIS*
Ga0157297_100866313	3300012914	Soil	VVLGKRLNGKPKKVLGVPIPGTGSGLTGVAKQVKKSGKQAKKVGKQIGELTEEVRAARKKAEDVGKAIS*
Ga0164302_106126172	3300012961	Soil	VVLGTRLGNKPKKVLGVSIPGTGSGLSGVAKQVKKSGKQAKKVGKQLGELTEEVRAARKKAEDVGKAIS*
Ga0157372_119499922	3300013307	Corn Rhizosphere	SNGSSKAAVVTGVVTAAAGVVGGVVLGTKLNHKPKKVLGVPIPGTGSGLTGVAKQVKKSGKQAMKVSKQIGELTEEVRAARKKAEEVGRAIS*
Ga0173480_103343912	3300015200	Soil	SGSSNSSNGSSKAAVVTGVVTAAAGVIGGVVLGSKLNNKPKKVLGMPIPGTGTGLTGVAKQVKKSGKQAKKVGKQIGELTEEVRAARKKAEDVGKAIS*
Ga0132257_1001637251	3300015373	Arabidopsis Rhizosphere	SSGSPKVALVTGAATAADGLVGGVVLGTRLNNKPKKVLGMPIPGTGSGLTGVAKQVKKSGKQAMKVSKQIGELTEEVRAARKKAEEVGRAIS*
Ga0132255_1001108641	3300015374	Arabidopsis Rhizosphere	VALITGIATAAAGRVGGVVLGSRLNNKPKKVLGVSVPGTGAGLSGVAKQVKKAGKHAKKAGQQIGELTDEVRAARQKAEDVGRAIS*
Ga0184617_11237953	3300018066	Groundwater Sediment	SGASGGNAQKQNGGGSKAAVVAGLATGAAGLIGGAVLGKSLAKKPKKVLGIPVPGTGGGMDGLAKQVGKAAKQFKKAGKQVGELTDEVRAAREKAEEIGRAFS
Ga0190265_121885512	3300018422	Soil	LIAGVATAAAGLVGGVVLGTRLGGKPKKVLGMKVPGTGAGFNGVAKQVKKTGKQVKKASKTVADLTDEVRAARKKAEEVGKVIS
Ga0190270_131010991	3300018469	Soil	SSSSNRSSANGNGTSKTPMIAGVATAAAGLVGGVVLGTRFGGKPKKVLGMKVPGTGKGLDGVAKQVKKTGKHVKKASKQVADLTDEVRSARKKAEDIGKAIS
Ga0206350_110668641	3300020080	Corn, Switchgrass And Miscanthus Rhizosphere	AVVTGVVTAAAGVVGGVVLGTKLNHKPKKVLGVPIPGTGSGLTGVAKQVKKSGKQAKKVGKQIGELTEEVRAARKKAEDVGKAIS
Ga0196959_100559082	3300021184	Soil	KSNSNSNSSKTSMVVGVVTGAAGLVGGAVLGSRMSKKPKKVLGVPIPGTGNGLHGVAKQVGKAGKQFKKASKQVSALTDEVRAAREKAEEVGKAIS
Ga0209481_102286862	3300027880	Populus Rhizosphere	SSRAASSGTSKAAVVTGVVTAAAGVVGGVVLGKKLNGGPKKVLGMPIPGTGSGLTGVAKQVKKSGKQAKKVGKQIGELTEEVRAARKKAEDVAKVIS
Ga0209382_103756042	3300027909	Populus Rhizosphere	VTGVATAAAGLVGGVVLGTRLGSKPKKVLGMKVPGTGAGLTGVAKQVKKAGKQIGKTSKQIGELTDEVRSARKKAEDVGKAIS
Ga0209382_106528412	3300027909	Populus Rhizosphere	VVLGKKLNGGPKKVLGMPIPGTGSGLTGVAKQVKKSGKQAKKVGKQIGELTEEVRAARKKAEDVGKAIS
Ga0302047_108374582	3300028554	Soil	AKPKKVLGIPVPGTGNSLAKQIGKSGKQAAKAGKQIGELTAEIRTARRKAEEVSKAIS
Ga0307291_11216521	3300028707	Soil	AASSNSGSSANGASKAQIITGVATAAAGLVGGVVLGTRLGKKPKRVFGVPVPGTGRGLDGVAKQVKKAGKQVGRTSKQIAELTDEVRAARKKAEDVGKAIS
Ga0307320_103974281	3300028771	Soil	SKAAVVTGVVTAAAGVVGGVVLGTRLNNKPKKVLGMKIPGTGAGLTGVAKQVKKAGKQIGKTSKQIGELTDEVRSARKKAEDVGKAIS
Ga0307277_102962672	3300028881	Soil	VAGVVTGAAGLVGGVVLGQRLGNRPKKVLGMRVPGTGRGLDGVAKEVKKAGKQFRKTSKQIGDLTDEVRSARKKAEEVGKAIS
Ga0307304_104272011	3300028885	Soil	SGSSANGASKAQIITGVATAAAGLVGGVVLGTRLGKKPKRVFGVPVPGTGRGLDGVAKQVKKAGKQVGRTSKQIAELTDEVRAARKKAEDVGKAIS
Ga0102757_100398472	3300030785	Soil	ASSGGSSKAAVVTGVLTAAAGVVGGVVLGSKLNNKPKKVLGMPIPGTGTGLTGVAKQVKKSGKQAKKVGKQIGELTEEVRAARQKAEDVGKAIS
Ga0102757_114276891	3300030785	Soil	ASSRSSSASPRSTAKQNGGGSKAAVVAGLATGAAGLIGGAVLGTRLGKKPKKVLGIPVPGTGGGIDGLAKQVGKAGKQFKKASKQVGELTDEVRAARKKAEEVGKAIS
Ga0102757_114479701	3300030785	Soil	VGGVVLGTKLNNKPKKVLGVPIPGTGAGLTGVAKQVKKSGKQAKKVGKQIGELTEEVRAARKKAEDVGKAIS
Ga0308203_10675891	3300030829	Soil	ASSNSGSSANGASKAQIITGVATAAAGLVGGVVLGTRLGKKPKRVFGVPVPGTGRGLDGVAKQVKKAGKQVGRTSKQIAELTDEVRAARKKAEDVGKAIS
Ga0308205_10401642	3300030830	Soil	ATAAAGLVGGVVLGTRLGGKPKRILGVKVPGTGSGLNGVAKQVKKTGKLFKKTTKQIGELTDEVRTARKKAEDVGKAIS
Ga0308202_10267252	3300030902	Soil	VVTAAAGVVGGVVLGTRLNNKPKKVLGMKIPGTGSGLTGVAKQVKKSGKQAKKVGKHIGDLTDEVRAARKKAEDVGKAIS
Ga0308206_10295082	3300030903	Soil	VGGVVLGTKLNHKPKKVLGVPIPGTGRGLDGVAKQVKKSGKQAKKVGKQIGELTEEVRTARKKAEDVGKAIS
Ga0308200_11630881	3300030905	Soil	SSAKSRSAPSASPRSKAKQNGGGSKAAVVAGLATGAAGLIGGAVLGTRLGKKPKKVLGIPVPGTGGGIDGLAKQVGKAGKQFKKASKQVGELTDEVRAARKKAEEVGKAIS
Ga0102760_100195712	3300031039	Soil	VVLGKKLNGGPKKVLGMPIPGTGSGLTGVAKQVKKSGKQAKKVGKQIGELTEEVRAARKKAEDVAKVIS
Ga0102760_100283942	3300031039	Soil	VTAAAGVVGGVVLGKKLNGGPKKVLGMPIPGTGSGLSGVAKQVKKSGKQAKKVGKQIGDLTEEVRAARKKAEDVAKVIS
Ga0102746_109449882	3300031054	Soil	VVLGKKLNGGPKKVLGMPIPGTGSGLSGVAKQVKKSGKQAKKVGKQIGDLTEEVRAARKKAEDVAKVIS
Ga0102746_110223111	3300031054	Soil	SRSQSSASRSSSNGTSKTAVITGVATAAAGLVGGVVLGTRLNNKPKKVLGMSIPGTGAGLTGVAKQVKKSGKTAKKVGKQIGELTEEVRAARKKAEDVGKAIS
Ga0308189_102028281	3300031058	Soil	GVVLGKKLNGGPKKVLGMPIPGTGSGLSGVAKQVKKSGKQAKKVGKQIGELTEEVRAARKKAEDVGKAIS
Ga0308201_100211952	3300031091	Soil	VTAAAGVVGGVVLGTKLNHKPKRVLGVPIPGTGHGLDGVAKQVKKSGKQAKKVGKQIGELTEEVRTARKKAEDVGKAIS
Ga0308201_100305612	3300031091	Soil	VVLGTRLGNKPKKVLGVSIPGTGAGLSGVAKQVKKSGKQAKKVGKQIGELTEEVRAAKKKAEDVGKAIS
Ga0308201_100970292	3300031091	Soil	SRSSGSSGRSANSGNGSSKAAVVTGVVTAAAGVVGGVVLGKKLNGGPKKVLGMPIPGTGSGLSGVAKQVKKSGKQAKKVGKQIGELTEEVRAARKKAEDVGKAIS
Ga0308201_103487501	3300031091	Soil	TAAAGVVGGVVLGKKLNGGPKKVLGMPIPGTGTGLSGVAKQVKKSGKQAKKVGKQIGELTEEVRAARKKAEDVGKAIS
Ga0308204_100087932	3300031092	Soil	VTAAAGVVGGVVLGTKLNHKPKRVLGVPIPGTGHGLDGVAKQVKKSGKQAKKVGKQIGELTEEVRAARKKAEDVGKAIS
Ga0307408_1013094732	3300031548	Rhizosphere	GVATAAAGLVGGVVLGTRLGSKPKKVLGMKIPGTGAGLTGVAKQVKKAGKQIGKTSKQIGELTDEVRSARKKAEDVGKAIS
Ga0307405_114804762	3300031731	Rhizosphere	VLGQRMGGKPKKVLGVRIPGTGHGLDDVVKQVKKAGKHAKNAGKQIGDLTDEVRTARKKAEDVGKAIS
Ga0307407_103244371	3300031903	Rhizosphere	SSNANGSSKAAVAAGIATGAAGLIGGVVLGTRMGGKPKRVLGMKVPGTGGGLDGVAKQVKKSGKQAKKVGKQIGELTEEVRAARKKAEDVGKAIS
Ga0307409_1029082821	3300031995	Rhizosphere	NSGPNGKVAVATGIATAAAGLVGGVVLGQRMGGKPKKVLGVRIPGTGHGLDDVVKQVKKAGKHAKNAGKQIGDLTDEVRTARKKAEDVGKAIS
Ga0307416_1005622972	3300032002	Rhizosphere	GSTRSRNTSSNGSSKTAVVTGVATAAAGLVGGVVLGKKLNGGPKKVLGMPIPGTGRGLDGIAKQVKKSGKQAKKVGKQIGELTEEVRAARKKAEDVGKAIS
Ga0307411_116050011	3300032005	Rhizosphere	VVGTRLGNKPKKVLGIKVPGTGAGLNGVAKQVKKAGKQIGKTSKQIGELTDEVRSARKKAEDVGKAIS
Ga0310906_105286422	3300032013	Soil	GGVILGTRLNNKPKKVLGVPVPGTGRGLDGVAKQVKKSGKQAMKVSKQIGELTEEVRAARKKAEEVGRAIS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F088466

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences