Metagenome / Metatranscriptome Family F088481

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F088481
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	56 residues
Representative Sequence	MKVAAKQEDPKALDYFTSTIIPARTLRAVAVLTLKHAVLLVGFTAGVMALVRLVLAD
Number of Associated Samples	70
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	55.05 %
% of genes near scaffold ends (potentially truncated)	32.11 %
% of genes from short scaffolds (< 2000 bps)	84.40 %
Associated GOLD sequencing projects	57
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.45

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (67.890 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere (11.927 % of family members)
Environment Ontology (ENVO)	Unclassified (32.110 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (54.128 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 52.94% β-sheet: 0.00% Coil/Unstructured: 47.06%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.45
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.45
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF00072	Response_reg	6.42
PF11172	DUF2959	4.59
PF01872	RibD_C	2.75
PF00762	Ferrochelatase	0.92
PF05199	GMC_oxred_C	0.92
PF13385	Laminin_G_3	0.92
PF04952	AstE_AspA	0.92
PF07040	DUF1326	0.92
PF01799	Fer2_2	0.92
PF02082	Rrf2	0.92
PF02738	MoCoBD_1	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	2.75
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	2.75
COG0276	Protoheme ferro-lyase (ferrochelatase)	Coenzyme transport and metabolism [H]	0.92
COG0640	DNA-binding transcriptional regulator, ArsR family	Transcription [K]	0.92
COG1414	DNA-binding transcriptional regulator, IclR family	Transcription [K]	0.92
COG1725	DNA-binding transcriptional regulator YhcF, GntR family	Transcription [K]	0.92
COG1959	DNA-binding transcriptional regulator, IscR family	Transcription [K]	0.92
COG2186	DNA-binding transcriptional regulator, FadR family	Transcription [K]	0.92
COG2188	DNA-binding transcriptional regulator, GntR family	Transcription [K]	0.92
COG2303	Choline dehydrogenase or related flavoprotein	Lipid transport and metabolism [I]	0.92
COG2378	Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains	Transcription [K]	0.92
COG2524	Predicted transcriptional regulator, contains C-terminal CBS domains	Transcription [K]	0.92
COG5588	Uncharacterized conserved protein, DUF1326 domain	Function unknown [S]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.89 %
All Organisms	root	All Organisms	32.11 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.89 %
cellular organisms	root	All Organisms → cellular organisms	32.11 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.89 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	32.11 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.89 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	25.69 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.89 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	25.69 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.89 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	20.18 %
Verrucomicrobiae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae	0.92 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.89 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	20.18 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	0.92 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.89 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	20.18 %
Verrucomicrobia subdivision 3	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3	0.92 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.89 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	20.18 %
Pedosphaera	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera	0.92 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.89 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	20.18 %
Pedosphaera parvula	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	0.92 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.89 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	20.18 %
Pedosphaera parvula Ellin514	strain	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula → Pedosphaera parvula Ellin514	0.92 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003321\|soilH1_10085226	All Organisms → cellular organisms → Bacteria	3561	Open in IMG/M
3300004799\|Ga0058863_11691993	Not Available	548	Open in IMG/M
3300004799\|Ga0058863_11932426	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1395	Open in IMG/M
3300005260\|Ga0074072_1019328	Not Available	2601	Open in IMG/M
3300005327\|Ga0070658_10058719	Not Available	3132	Open in IMG/M
3300005337\|Ga0070682_100658678	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	834	Open in IMG/M
3300005340\|Ga0070689_101165838	Not Available	691	Open in IMG/M
3300005341\|Ga0070691_10049977	All Organisms → cellular organisms → Bacteria	1993	Open in IMG/M
3300005436\|Ga0070713_101596411	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	633	Open in IMG/M
3300005458\|Ga0070681_10450630	Not Available	1199	Open in IMG/M
3300005458\|Ga0070681_11025553	Not Available	745	Open in IMG/M
3300005459\|Ga0068867_100939563	Not Available	780	Open in IMG/M
3300005530\|Ga0070679_100166058	Not Available	2181	Open in IMG/M
3300005535\|Ga0070684_100424457	Not Available	1228	Open in IMG/M
3300005535\|Ga0070684_102241833	Not Available	515	Open in IMG/M
3300005538\|Ga0070731_10002531	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	17293	Open in IMG/M
3300005538\|Ga0070731_10609619	Not Available	726	Open in IMG/M
3300005539\|Ga0068853_100846691	Not Available	877	Open in IMG/M
3300005563\|Ga0068855_100426006	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1451	Open in IMG/M
3300005563\|Ga0068855_100498529	Not Available	1323	Open in IMG/M
3300005563\|Ga0068855_100876790	Not Available	949	Open in IMG/M
3300005563\|Ga0068855_101066683	Not Available	846	Open in IMG/M
3300005577\|Ga0068857_101789987	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	601	Open in IMG/M
3300005578\|Ga0068854_100722049	Not Available	862	Open in IMG/M
3300005614\|Ga0068856_100594964	Not Available	1127	Open in IMG/M
3300006806\|Ga0079220_11373431	Not Available	597	Open in IMG/M
3300009093\|Ga0105240_10607801	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1203	Open in IMG/M
3300010048\|Ga0126373_10092811	Not Available	2776	Open in IMG/M
3300010048\|Ga0126373_10279884	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1655	Open in IMG/M
3300010048\|Ga0126373_10400277	Not Available	1397	Open in IMG/M
3300010371\|Ga0134125_10425379	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1473	Open in IMG/M
3300010371\|Ga0134125_10567163	Not Available	1256	Open in IMG/M
3300010373\|Ga0134128_10019593	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	8028	Open in IMG/M
3300010373\|Ga0134128_10028290	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	6608	Open in IMG/M
3300010376\|Ga0126381_100057619	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula → Pedosphaera parvula Ellin514	4786	Open in IMG/M
3300010376\|Ga0126381_104612602	Not Available	531	Open in IMG/M
3300010396\|Ga0134126_11595053	Not Available	718	Open in IMG/M
3300012212\|Ga0150985_104323502	Not Available	568	Open in IMG/M
3300012212\|Ga0150985_108393865	Not Available	617	Open in IMG/M
3300012212\|Ga0150985_109066982	Not Available	528	Open in IMG/M
3300012469\|Ga0150984_102779784	Not Available	552	Open in IMG/M
3300012469\|Ga0150984_108481990	Not Available	611	Open in IMG/M
3300012469\|Ga0150984_109235981	Not Available	588	Open in IMG/M
3300012469\|Ga0150984_123136681	Not Available	582	Open in IMG/M
3300012469\|Ga0150984_123331206	Not Available	549	Open in IMG/M
3300012469\|Ga0150984_123687338	Not Available	578	Open in IMG/M
3300012929\|Ga0137404_10075272	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2663	Open in IMG/M
3300013104\|Ga0157370_11817061	Not Available	547	Open in IMG/M
3300013296\|Ga0157374_10251703	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1739	Open in IMG/M
3300013296\|Ga0157374_10604064	Not Available	1107	Open in IMG/M
3300013296\|Ga0157374_12590753	Not Available	535	Open in IMG/M
3300013296\|Ga0157374_12948911	Not Available	503	Open in IMG/M
3300013297\|Ga0157378_10110055	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2524	Open in IMG/M
3300014968\|Ga0157379_10425310	Not Available	1223	Open in IMG/M
3300016445\|Ga0182038_11892045	Not Available	539	Open in IMG/M
3300017970\|Ga0187783_10192113	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1501	Open in IMG/M
3300019999\|Ga0193718_1002278	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	4072	Open in IMG/M
3300020021\|Ga0193726_1207743	Not Available	820	Open in IMG/M
3300020021\|Ga0193726_1372715	Not Available	514	Open in IMG/M
3300020199\|Ga0179592_10358209	Not Available	641	Open in IMG/M
3300021403\|Ga0210397_10027908	All Organisms → cellular organisms → Bacteria	3505	Open in IMG/M
3300021403\|Ga0210397_10220445	All Organisms → cellular organisms → Bacteria	1364	Open in IMG/M
3300021404\|Ga0210389_10771101	Not Available	752	Open in IMG/M
3300021560\|Ga0126371_12990232	Not Available	572	Open in IMG/M
3300021560\|Ga0126371_13570138	Not Available	525	Open in IMG/M
3300022708\|Ga0242670_1023892	Not Available	750	Open in IMG/M
3300024222\|Ga0247691_1046753	Not Available	655	Open in IMG/M
3300024245\|Ga0247677_1027417	Not Available	817	Open in IMG/M
3300024283\|Ga0247670_1068526	Not Available	645	Open in IMG/M
3300025909\|Ga0207705_11106503	Not Available	610	Open in IMG/M
3300025912\|Ga0207707_10146637	Not Available	2063	Open in IMG/M
3300025912\|Ga0207707_11629937	Not Available	507	Open in IMG/M
3300025913\|Ga0207695_10251894	Not Available	1665	Open in IMG/M
3300025913\|Ga0207695_10311872	All Organisms → cellular organisms → Bacteria	1463	Open in IMG/M
3300025917\|Ga0207660_10467860	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1021	Open in IMG/M
3300025921\|Ga0207652_10886443	Not Available	789	Open in IMG/M
3300025928\|Ga0207700_11026988	Not Available	738	Open in IMG/M
3300025928\|Ga0207700_11105207	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	709	Open in IMG/M
3300025949\|Ga0207667_10182272	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2156	Open in IMG/M
3300025949\|Ga0207667_10954538	Not Available	847	Open in IMG/M
3300026023\|Ga0207677_11849761	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	561	Open in IMG/M
3300026041\|Ga0207639_12295338	Not Available	501	Open in IMG/M
3300026078\|Ga0207702_10805044	Not Available	929	Open in IMG/M
3300026116\|Ga0207674_10892530	Not Available	857	Open in IMG/M
3300027869\|Ga0209579_10003503	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	11363	Open in IMG/M
3300027869\|Ga0209579_10395958	Not Available	748	Open in IMG/M
3300028573\|Ga0265334_10086567	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1148	Open in IMG/M
3300028800\|Ga0265338_10055537	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3521	Open in IMG/M
3300028800\|Ga0265338_10249468	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1310	Open in IMG/M
3300028800\|Ga0265338_11235533	Not Available	500	Open in IMG/M
3300030521\|Ga0307511_10240298	Not Available	884	Open in IMG/M
3300030923\|Ga0138296_1727511	Not Available	563	Open in IMG/M
3300031057\|Ga0170834_103300835	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1826	Open in IMG/M
3300031057\|Ga0170834_109514127	Not Available	556	Open in IMG/M
3300031057\|Ga0170834_110358464	Not Available	561	Open in IMG/M
3300031128\|Ga0170823_10273430	Not Available	646	Open in IMG/M
3300031231\|Ga0170824_100395334	All Organisms → cellular organisms → Bacteria	1422	Open in IMG/M
3300031231\|Ga0170824_101150120	Not Available	527	Open in IMG/M
3300031231\|Ga0170824_107145750	Not Available	733	Open in IMG/M
3300031231\|Ga0170824_111151215	Not Available	695	Open in IMG/M
3300031232\|Ga0302323_100448851	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1373	Open in IMG/M
3300031446\|Ga0170820_12546682	Not Available	564	Open in IMG/M
3300031446\|Ga0170820_16491093	Not Available	602	Open in IMG/M
3300031469\|Ga0170819_14516339	Not Available	586	Open in IMG/M
3300031474\|Ga0170818_105994957	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	931	Open in IMG/M
3300031474\|Ga0170818_108134317	Not Available	533	Open in IMG/M
3300031712\|Ga0265342_10158920	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1250	Open in IMG/M
3300031823\|Ga0307478_11756733	Not Available	510	Open in IMG/M
3300032954\|Ga0335083_11300351	Not Available	559	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	59.63%
Host-Associated	Host-Associated	40.37%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	59.63%
Plants	Host-Associated → Plants	38.53%
Human	Host-Associated → Human	1.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	58.72%
Rhizosphere	Host-Associated → Plants → Rhizosphere	21.10%
Rhizoplane	Host-Associated → Plants → Rhizoplane	16.51%
Digestive System	Host-Associated → Human → Digestive System	1.83%
Peat	Environmental → Terrestrial → Peat	0.92%
Roots	Host-Associated → Plants → Roots	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	43.12%
Loam	Environmental → Terrestrial → Soil → Loam	13.76%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	13.76%
Soil	Host-Associated → Plants → Rhizosphere → Soil	11.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.17%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.75%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.83%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	1.83%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	21.10%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.27%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	13.76%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	13.76%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	11.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.17%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.75%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.83%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.83%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	1.83%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.92%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	11.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	11.93%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	9.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	7.34%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.42%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	5.50%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	4.59%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	4.59%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	4.59%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	3.67%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.75%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	2.75%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.75%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.83%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	1.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.92%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.92%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.92%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.92%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.92%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.92%
Ectomycorrhiza	Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza	0.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003321	Sugarcane bulk soil Sample H1	Environmental	Open in IMG/M
3300004799	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-3 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005260	Microbial communities on the surface of kaolinite enhanced biochar from soil with fertiliser in Sydney, Australia	Environmental	Open in IMG/M
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300013104	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG	Host-Associated	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300019999	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a1	Environmental	Open in IMG/M
3300020021	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022708	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024222	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK32	Environmental	Open in IMG/M
3300024245	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK18	Environmental	Open in IMG/M
3300024283	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK11	Environmental	Open in IMG/M
3300025909	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028573	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG	Host-Associated	Open in IMG/M
3300028800	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG	Host-Associated	Open in IMG/M
3300030521	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM	Host-Associated	Open in IMG/M
3300030923	Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A3_MS_autumn Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031232	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_3	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031712	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG	Host-Associated	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
soilH1_100852266	3300003321	Sugarcane Root And Bulk Soil	MKVEAKQEDRKALDYFTSQLLPVHTLRAVAAVQLRHAFMLVGFVAGIMALVRLLLAD*
Ga0058863_116919931	3300004799	Host-Associated	EDRKSLDYFTSQITPVQTLRACAVLRLRHAFLLVGFAAVAMALVRYLLAD*
Ga0058863_119324262	3300004799	Host-Associated	MKVAAKEEDRKALDYFTTTITPVHALRAAAVLTVRHAFLLVGFTAVVMALVRLLLAD*
Ga0074072_10193283	3300005260	Soil	MKVAAKEEDRKALDYFTSQITPVQTLRACAVLQLRHAFMLVGFAAVAMALVRFLLAD*
Ga0070658_100587194	3300005327	Corn Rhizosphere	MKVAAKDEDRKSLDYFTSQITPVQTLRACAVLRLRHAFLLVGFAAVAMALVRYLLAD*
Ga0070682_1006586782	3300005337	Corn Rhizosphere	MKVAAKQEDRKAIDYFTSQITPVHTLRAVAVLQLRHAFMLVGFVAGI
Ga0070689_1011658381	3300005340	Switchgrass Rhizosphere	MKVAAKQEDRKAPDYFTSQLIPVHTLRAVAAVQLRHAFMLVGFVAGIMALVRLVLAD*
Ga0070691_100499772	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	MKVAAKEEDRKALDYFTSTIIPVHTLRAVAVLTLKHAVLLVGFTAGVVALMRLVLAD*
Ga0070713_1015964111	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MKVAAKQEEPKSLDYFSSTIIPVHTLRAVAVCTLKHAVLLVGFTAVV
Ga0070681_104506303	3300005458	Corn Rhizosphere	MKVAAKEEDRKALDYFTAQITPVHALRAAAVLKLRHAFLLVAFTAVAMALVRLVLAD*
Ga0070681_110255532	3300005458	Corn Rhizosphere	MKVAVKQEEPKALDYFTTTITPVHTLRAAAVLTLRHAVLLVGFTAAVMALVRLVLAD*
Ga0068867_1009395631	3300005459	Miscanthus Rhizosphere	MKVAAKQEDRKALDYFTSQIMPVQTLRAVAVLQLRHAFMLVGFVAAAMALVRLVLAN*
Ga0070679_1001660582	3300005530	Corn Rhizosphere	MKVAVKQEDPKALDYFSSTIIPAQTLRAVAVLTLKHAVLLVGFTAGVMALVRLVLAD*
Ga0070684_1004244572	3300005535	Corn Rhizosphere	MKVAAKDEDRKSLDYFTSQITPVQTLRACAVLRLRHAFLLVGFAAVAMAL
Ga0070684_1022418331	3300005535	Corn Rhizosphere	MKVAAKQEEPKSLDYFTSTIIPVQTLRAVAVLTLKHAVLLVGFTAVVMALVRLLLAD*
Ga0070731_100025316	3300005538	Surface Soil	MKVAAKENRKALDYFSSTIVPSQALQAVAVLTIKHAVLLIGFGVGVMALVRLILAD*
Ga0070731_106096192	3300005538	Surface Soil	MKVAANQDRKSLDYFTSTIIPCHLRAVAVLTLKHAILLVGFTAGMMALVRLLLAD*
Ga0068853_1008466911	3300005539	Corn Rhizosphere	AKEEDRKSLDYFTSQIAPVHAFRAVAVLQLRHAVLLVGFAAVAMALVRLVLAD*
Ga0068855_1004260062	3300005563	Corn Rhizosphere	MKVAAKEEDRKALDYFTSQITPVHLRAVAVLQLRHAFLLVGFTAVVMALVRLVLAD*
Ga0068855_1004985292	3300005563	Corn Rhizosphere	MKVEAKQEDRKALDYFTSQIIPVHTLRAVAVLQLRHAFMLVGFVAVAMALVRLVLAD*
Ga0068855_1008767901	3300005563	Corn Rhizosphere	MKVEAKQEDRKALDYFTSQLIPVQTLRAVAAVQLRHAFMLVGFVAVAMALVRLVLAD
Ga0068855_1010666831	3300005563	Corn Rhizosphere	MKVAAKEEDRKAVDYFTSTIIPCQKFRAVAVVTLKHAVLLIALTAGMMALVRLVLAD*
Ga0068857_1017899871	3300005577	Corn Rhizosphere	MTAMKVAAKEEDRKALDYFTSQIAPVHAFRAVAVLQLRHAALLVGFVAV
Ga0068854_1007220493	3300005578	Corn Rhizosphere	MKVEAKQEDRKALDYFTSQLIPVQTLRAVAAVQLRHAFMLVGFVAVAMALVRLVLAD*
Ga0068856_1005949644	3300005614	Corn Rhizosphere	MKVAAKQEEPKSLDYFSSTIIPVHTLRAVAVLTLKHAVLLVSFTAVVMALVRLLLAD*
Ga0079220_113734311	3300006806	Agricultural Soil	MTAMKVAAKEEDRKALDYFTSQIAPVHAFRAVAVLQLRHAVLLVGFAAVAMALVRLILAD
Ga0105240_106078011	3300009093	Corn Rhizosphere	KGCMKVEAKQEDRKALDYFTSQIIPVHTLRAVAVLQLRHAFMLVGFVAVAMALVRLVLAD
Ga0126373_100928114	3300010048	Tropical Forest Soil	MKVAAKENRKALDYFTSTIIPSQALQAVAVLTIKHAVLLIGFGVGVMALVRLVLAD*
Ga0126373_102798842	3300010048	Tropical Forest Soil	LAWIGPPDALRDAMKVAAKQNGKALDDFSCTILPCRMFRAVAALTLKHIVLLVGFAVGLMALVRLVLAD*
Ga0126373_104002772	3300010048	Tropical Forest Soil	MKVAAKQNGKSIDDFTCTILPCRMFRAVAALTIKHIVLLVGFGVGLMALVRLVLAD*
Ga0134125_104253793	3300010371	Terrestrial Soil	MKVAAKEEDRKSLDYFTSQITPVQTLRAVAVLQLRHAFLLVGFAAVAMALVRFLLAD*
Ga0134125_105671632	3300010371	Terrestrial Soil	MKVAAKEEDRKALDYFTSQIAPVHAFRAVAVLQLRHAALLVGFVAVAMALVRLVLAD*
Ga0134128_100195936	3300010373	Terrestrial Soil	MKVAAKQEDPKALDYFTSTIMPCRLRAVAVLTMKHAVLLVGVTAVVIALMRFVLAD*
Ga0134128_100282905	3300010373	Terrestrial Soil	MKVAAKEEDRKALDYFTSQIMPVQTWRACAVLQLRHAFMLVGFAAVVMAVVRFLLAD*
Ga0126381_1000576192	3300010376	Tropical Forest Soil	MKVAAKQNGKALDDFSCTILPCRMFRAVAALTLKHIVLLVGFAVGLMALVRLVLAD*
Ga0126381_1046126022	3300010376	Tropical Forest Soil	MKVAAKENRKALDYFTSTIIPSQALQAVAVLTIKHAVLLIGFGVGVMALVRLILAD*
Ga0134126_115950532	3300010396	Terrestrial Soil	MKVAAKHEDPKALDYFSSTIVPAQTLRAVAVFTIKHAVLLVGFTAGIMALVRLILAD*
Ga0150985_1043235023	3300012212	Avena Fatua Rhizosphere	EDPKALDYFTSTIIPVQTLRAVAVLTLKHAVLLVGFTAGVMALVRLLLAD*
Ga0150985_1083938651	3300012212	Avena Fatua Rhizosphere	VEAKQEDRKALDYFTSQIMPVHTLRAVSVLQLRHAFMLVGFVAAAMALVRLVLAN*
Ga0150985_1090669821	3300012212	Avena Fatua Rhizosphere	KQEDQKALDYFTSQITPVQALRAVAVLQLRHAFLLVGFTGVVLALVRLLLAD*
Ga0150984_1027797841	3300012469	Avena Fatua Rhizosphere	QEDPKALDYFSSTIVPVQTLRAVAGLTLRHAVLLVGFTGGVMALVRLVLAD*
Ga0150984_1084819901	3300012469	Avena Fatua Rhizosphere	QEDRKALDYFTSQLIPVHTLRAVAAVQLRHAFMLVGFVAGIMALVRLLLAD*
Ga0150984_1092359813	3300012469	Avena Fatua Rhizosphere	AKQEDPKALDYFTSTIIPAPALRAVAVVTLKHAVLLVSFTAGVVALMRMVLAD*
Ga0150984_1231366811	3300012469	Avena Fatua Rhizosphere	AAKQEDPKALDYFTSTIIPVQTLRAVAVLTLKHAVLLVGFTAGVMALVRLLLAD*
Ga0150984_1233312061	3300012469	Avena Fatua Rhizosphere	AKQEDPKSLDYFTSTIIPVQTLRAVAVLTLKHAVLLVGFTAGVMALVRLLLAD*
Ga0150984_1236873383	3300012469	Avena Fatua Rhizosphere	KALDYFTSQLIPVHTLRAVAAVQLRHAFMLVGFVAGMMALVRLVLAD*
Ga0137404_100752724	3300012929	Vadose Zone Soil	MKVAANKEDPKALDYFTSTIIPVRTLRAVAVLTLKHAVLLVGFTAGVVALVRLVLAD*
Ga0157370_118170611	3300013104	Corn Rhizosphere	MKVAAKEEDRKALDYFTTTITPVHALRAAAVLTVRHAFLLVGFTAVVMALVRLVLAD*
Ga0157374_102517033	3300013296	Miscanthus Rhizosphere	MKVAAKQEDPKTLDYFTSQITPVHALRGIAVLQLRHAFLLVAFTGTVMALVRLLLAD*
Ga0157374_106040641	3300013296	Miscanthus Rhizosphere	MKVEAKQEDRKAVDYFTSQLIPAHTLRAVAAVQLRHAFMLVGFVAGIMALVRLVLAN*
Ga0157374_125907531	3300013296	Miscanthus Rhizosphere	MKVAAKQEDRKALDYFTAQLRPVHTLRAVATVQLRHAFMLVGFVGGMMALVRLLLAD*
Ga0157374_129489112	3300013296	Miscanthus Rhizosphere	MKVAAKQEDPKTLDYFTTTIIPVQTLRAVAVLTLKHAVLLVGFTAGVMALVRL
Ga0157378_101100551	3300013297	Miscanthus Rhizosphere	MKVEAKQEDRKALDYFTSQLIPVHTLRAVAAVQLRHAFMLVSFVAGIMALVRLVLAD*
Ga0157379_104253103	3300014968	Switchgrass Rhizosphere	MKVAAKQEDRKALDYFTAQLLPVHTLRAVATVQLRHAFMLVGFVGGMMALVRLLLAD*
Ga0182038_118920452	3300016445	Soil	MKAMKVAAKQEDPKALDYFTSQITPVHALRAAAVLQLRHAFMLVAFTGTVMAIVRLLLAD
Ga0187783_101921132	3300017970	Tropical Peatland	MKVAAKQNHRALDYFTSTIIPSHSLQAVAVLTIKHAVLLISFGVAMMALVRLILAD
Ga0193718_10022785	3300019999	Soil	MGCMKVAANKEDPKSLDYFTSTIIPCRTLRAVAVLTLKHAVLLIGFTAGVMALMRLVLAD
Ga0193726_12077432	3300020021	Soil	MKVAAKQEEDPKALDYFTSTITPCRLRAMAVLTLKHAVLLIGFTAGIMALVRLVLAD
Ga0193726_13727151	3300020021	Soil	MKEAVKQEDPKALDYFSSTIIPVQTFRAVAVLTLKHAVLLVGFTAGVMALVRLVLAD
Ga0179592_103582092	3300020199	Vadose Zone Soil	MKVAANKEDPKALDYFTSTIIPVRTLRAVAVLTLKHAVLLVGFTAGVVALVRLVLAD
Ga0210397_100279083	3300021403	Soil	MKVAAKEEDRKALDYFTSQITPVQLRAVAVLQLRHAFLLVSITAVVMALVRLLLAD
Ga0210397_102204451	3300021403	Soil	MMGMKVVAKEEDRKAVDYFTSTIIPCQTFRAVAVVTIKHAVLLIGLTAGVMALVRLVLAD
Ga0210389_107711013	3300021404	Soil	MKVAAKQEDTKSLDYFTSTIMPCRTLRAVAVLTLKHAVLLVGFTAGMMALVRLVLAD
Ga0126371_129902321	3300021560	Tropical Forest Soil	MKVAAKQNGKDLDDFTCTILPCRMFRAVAAMTLKHIVLLVGFAVGLMALVRLVLAD
Ga0126371_135701381	3300021560	Tropical Forest Soil	RDAMKVVAKQNGKALDDFSCTILPCRMFRAVAALTLKHIVLLVGFAVGLMALVRLVLAD
Ga0242670_10238922	3300022708	Soil	MMGMKVVAKEEDRKAVDYFTSTIIPSQTFRAVAVVTIKHAVLLIGLTAGVMALVRLVLAD
Ga0247691_10467532	3300024222	Soil	MKVAAKQEDPKALDYFTSTITPCQTLRAVAALTLKHAVLLIGFTAGVMALVRLVLAD
Ga0247677_10274173	3300024245	Soil	MKVAANQDRKALDYFTSTIIPCQALRAVAVVTLKHGLLLVGLTVGMMALVRQILAN
Ga0247670_10685261	3300024283	Soil	MKVAAKQEDPKALDYFTSTITPCQTLRAVAALTLKHAVLLIGFTAGVM
Ga0207705_111065031	3300025909	Corn Rhizosphere	MKVAAKDEDRKSLDYFTSQITPVQTLRACAVLRLRHAFLLVGFAAVAMALVRYLLAD
Ga0207707_101466374	3300025912	Corn Rhizosphere	MKVAAKEEDRKALDYFTSQITPVQTLRACAVLQLRHAFMLVGFAAVAMALVRFLLAD
Ga0207707_116299372	3300025912	Corn Rhizosphere	MKVAAKEEDRKALDYFTTTITPVHALRAAAVLTVRHAFLLVGFTAVVMALVRLLLAD
Ga0207695_102518944	3300025913	Corn Rhizosphere	MKVEAKQEDRKALDYFTSQIIPVHTLRAVAVLQLRHAFMLVGFVAVAMALVRLVLAD
Ga0207695_103118721	3300025913	Corn Rhizosphere	MKVAAKEEDRKALDYFTSTIIPVHTLRAVAVLTLKHAVLLVGFTAGVVALMRLVLAD
Ga0207660_104678603	3300025917	Corn Rhizosphere	MKVAVKQEDPKALDYFSSTIIPAQTLRAVAVLTLKHAVLLVGFTAGVMALVRLVLAD
Ga0207652_108864432	3300025921	Corn Rhizosphere	MKVAAKDEDRKSLDYFTSQITPVQTLRACAVLRLRHAFLLVGFAAVAMALVRYLL
Ga0207700_110269881	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MKVAAKQEDRKALDYFTAQLLPVHTLRAVATVQLRHAFMLVGFVGGMMALVRLLLAD
Ga0207700_111052072	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MKVAAKQEEPKSLDYFSSTIIPVHTLRAVAVCTLKHAVLLVGFTAVVIALVRMLLAD
Ga0207667_101822723	3300025949	Corn Rhizosphere	MTAMKVAAKEEDRKALDYFTSQIAPVHAFRAVAVLQLRHAALLVGFVAVAMALVRLLLAD
Ga0207667_109545381	3300025949	Corn Rhizosphere	FTIFFLCLKKGMKVAAKEEDRKALDYFTSQITPVHLRAVAVLQLRHAFLLVGFTAVVMALVRLVLAD
Ga0207677_118497612	3300026023	Miscanthus Rhizosphere	MKVEAKQEDRKAVDYFTSQLIPAHTLRAVAAVQLRHAFMLVGFVAGIMALVRLVLAN
Ga0207639_122953381	3300026041	Corn Rhizosphere	MTAMKVAAKEEDRKSLDYFTSQIAPVHAFRAVAVLQLRHAVLLVGFAAVAMALVRLVLAD
Ga0207702_108050443	3300026078	Corn Rhizosphere	MKVAAKQEEPKSLDYFSSTIIPVHTLRAVAVLTLKHAVLLVSFTAVVMALVRLLLAD
Ga0207674_108925301	3300026116	Corn Rhizosphere	MKVEAKQEDRKALDYFTSQIAPVHAFRAVAVLQLRHAALLVGFVAVAMALVRLLLAD
Ga0209579_1000350312	3300027869	Surface Soil	MKVAAKENRKALDYFSSTIVPSQALQAVAVLTIKHAVLLIGFGVGVMALVRLILAD
Ga0209579_103959583	3300027869	Surface Soil	MKVAANQDRKSLDYFTSTIIPCHLRAVAVLTLKHAILLVGFTAGMMALVRLLLAD
Ga0265334_100865672	3300028573	Rhizosphere	MKVAAKQEDPKALDYFTTTIIPVQTLRAVAVLTLKHAVLLVGFTAGIMTLVRLVLAD
Ga0265338_100555373	3300028800	Rhizosphere	MKVAAKQEDPKALDYFTTTIIPAQTLRAVAVLTLKHAVLLVGFTAGVMTLVRLVLAD
Ga0265338_102494682	3300028800	Rhizosphere	MKVAAKQEDPKALDYFTSTIIPAQALRAVAVLTLRHAFLLVGFVAGMMALVRLLLAD
Ga0265338_112355331	3300028800	Rhizosphere	MKVAAKQEDPKALDYFTTTIIPVQTLRAVAVLTLKHAVLLVGFTAGVMTLVRLVLAD
Ga0307511_102402981	3300030521	Ectomycorrhiza	MKVAAKTEDPKALDYFTSTITPCRTLRAVAVLTLKHAVLLVGFTAGMMALVRLVL
Ga0138296_17275111	3300030923	Soil	AAKQEEDPKALDYFTTTIMPAHTCRAVAVLTLKHAVLLVGFTAGVMALVRLVLAD
Ga0170834_1033008353	3300031057	Forest Soil	MKVAARHNPKAIDYFTSTIIPCRTLRAVAVLTIKHAVLLVGITAVMMSLVRLLLAD
Ga0170834_1095141272	3300031057	Forest Soil	MKVVAKEEDRKAVDYFTSTITPCHQTFRAVAVVTLKHAVLLIGLTAGVMALVRLVLAD
Ga0170834_1103584642	3300031057	Forest Soil	FNKVPFWVGPAHAKRGGMKVAANQDDRKGLDYFTTTILPCKTLRAVAVLTLKHAVLFVGFTAGMMALVRLLLAD
Ga0170823_102734302	3300031128	Forest Soil	MKVAANQDDRKGLDYFTTTILPCKTLRAVAVLTLKHAVLLVGFAAGMMALVRLLLAD
Ga0170824_1003953341	3300031231	Forest Soil	MKVAAKQEDPKALDYFTSTIIPARTLRAVAVLTLKHAVLLVGFTAGVMALVRLVLAD
Ga0170824_1011501202	3300031231	Forest Soil	LKTVMKVEAKQEDRKALDYFTSQIMPVQTLRAVAVLQLRHAFLLVGFTALVMALVRFVLA
Ga0170824_1071457502	3300031231	Forest Soil	MKVAANQDDRKGLDYFTTTILPCKTLRAVAVLTLKHAVLFVGFTAGMMALVRLLLAD
Ga0170824_1111512152	3300031231	Forest Soil	MPTMKVAAKEEDRKAVDYFTSTIIPCKTLRAVAALTLKHAVLLIGFVAGVMALVRFVLAD
Ga0302323_1004488511	3300031232	Fen	MKVAAKQEDPKALDYFSSTIIPAHALRAVAVMTLRHAILLVGCTAGVVALMRLVLAD
Ga0170820_125466821	3300031446	Forest Soil	PKAIDYFTSTITPCQTLRAVAGLTLKHAVLLVGFTAGVMALVRLVLAD
Ga0170820_164910932	3300031446	Forest Soil	MKVAAKEEDRKALDYFTSTIIPCKTLRAAVALTLKHAVLLIGFAAGVMALVRFVLAD
Ga0170819_145163392	3300031469	Forest Soil	MKVAAKQEDPKAIDYFTSTITPCQTLRAVAGLTLKHAVLLVGFTAGVMALVRLVLAD
Ga0170818_1059949572	3300031474	Forest Soil	SMKVAARHNPKAIDYFTSTIIPCRTLRAVAVLTIKHAVLLVGITAVMMSLVRLLLAD
Ga0170818_1081343171	3300031474	Forest Soil	AAKEEDRKALDYFTSTIIPCKTLRAAVALTLKHALLLIGFAAGVMALVRFVLAD
Ga0265342_101589203	3300031712	Rhizosphere	VLCLRDAMKVAAKQEDPKALDYFTTTIIPAQTLRAVAVLTLKHAVLLVGFTAGVMTLVRLVLAD
Ga0307478_117567331	3300031823	Hardwood Forest Soil	MKVAAKEEDRKALDYFTSTIIPVQTLRAVAVLTLKHAVLLVGFTAGVVALVRLVLAD
Ga0335083_113003511	3300032954	Soil	MKVVAKEEDRKAVDYFTSTIIPCQTFRAAAVVTLKHAVLLIGFTAGVMALVRLFLAD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F088481

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences