NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F088668

Metagenome / Metatranscriptome Family F088668

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F088668
Family Type Metagenome / Metatranscriptome
Number of Sequences 109
Average Sequence Length 72 residues
Representative Sequence MEPKVIKWDGSHVPEELRSLPPGRYAIESVDQVGILTEEEEAGLLAGLTELDAGRGIPLADVVREIIRGGTSKR
Number of Associated Samples 99
Number of Associated Scaffolds 109

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 88.99 %
% of genes near scaffold ends (potentially truncated) 18.35 %
% of genes from short scaffolds (< 2000 bps) 66.97 %
Associated GOLD sequencing projects 92
AlphaFold2 3D model prediction Yes
3D model pTM-score0.34

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (87.156 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil
(12.844 % of family members)
Environment Ontology (ENVO) Unclassified
(29.358 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(31.193 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 31.37%    β-sheet: 0.00%    Coil/Unstructured: 68.63%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.34
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 109 Family Scaffolds
PF05016ParE_toxin 37.61
PF02604PhdYeFM_antitox 7.34
PF02698DUF218 4.59
PF01850PIN 3.67
PF02769AIRS_C 2.75
PF09509Hypoth_Ymh 1.83
PF02606LpxK 1.83
PF13507GATase_5 1.83
PF01075Glyco_transf_9 1.83
PF13191AAA_16 0.92
PF00861Ribosomal_L18p 0.92
PF04365BrnT_toxin 0.92
PF02621VitK2_biosynth 0.92
PF12910PHD_like 0.92
PF04193PQ-loop 0.92
PF12770CHAT 0.92
PF00266Aminotran_5 0.92
PF01909NTP_transf_2 0.92
PF13650Asp_protease_2 0.92
PF02700PurS 0.92
PF13751DDE_Tnp_1_6 0.92
PF13683rve_3 0.92
PF14890Intein_splicing 0.92
PF04326AlbA_2 0.92
PF01548DEDD_Tnp_IS110 0.92
PF04321RmlD_sub_bind 0.92
PF04014MazE_antitoxin 0.92
PF07927HicA_toxin 0.92
PF13537GATase_7 0.92

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 109 Family Scaffolds
COG2161Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM familyDefense mechanisms [V] 7.34
COG4118Antitoxin component of toxin-antitoxin stability system, DNA-binding transcriptional repressorDefense mechanisms [V] 7.34
COG1434Lipid carrier protein ElyC involved in cell wall biogenesis, DUF218 familyCell wall/membrane/envelope biogenesis [M] 4.59
COG2949Uncharacterized periplasmic protein SanA, affects membrane permeability for vancomycinCell wall/membrane/envelope biogenesis [M] 4.59
COG0451Nucleoside-diphosphate-sugar epimeraseCell wall/membrane/envelope biogenesis [M] 1.83
COG0702Uncharacterized conserved protein YbjT, contains NAD(P)-binding and DUF2867 domainsGeneral function prediction only [R] 1.83
COG0859ADP-heptose:LPS heptosyltransferaseCell wall/membrane/envelope biogenesis [M] 1.83
COG1086NDP-sugar epimerase, includes UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 and capsular polysaccharide biosynthesis protein EpsCCell wall/membrane/envelope biogenesis [M] 1.83
COG1663Tetraacyldisaccharide-1-P 4'-kinase (Lipid A 4'-kinase)Cell wall/membrane/envelope biogenesis [M] 1.83
COG0256Ribosomal protein L18Translation, ribosomal structure and biogenesis [J] 0.92
COG1087UDP-glucose 4-epimeraseCell wall/membrane/envelope biogenesis [M] 0.92
COG1088dTDP-D-glucose 4,6-dehydrataseCell wall/membrane/envelope biogenesis [M] 0.92
COG1089GDP-D-mannose dehydrataseCell wall/membrane/envelope biogenesis [M] 0.92
COG1090NAD dependent epimerase/dehydratase family enzymeGeneral function prediction only [R] 0.92
COG1091dTDP-4-dehydrorhamnose reductaseCell wall/membrane/envelope biogenesis [M] 0.92
COG1427Chorismate dehydratase (menaquinone biosynthesis, futalosine pathway)Coenzyme transport and metabolism [H] 0.92
COG1724Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase familyGeneral function prediction only [R] 0.92
COG1828Phosphoribosylformylglycinamidine (FGAM) synthase, PurS subunitNucleotide transport and metabolism [F] 0.92
COG2865Predicted transcriptional regulator, contains HTH domainTranscription [K] 0.92
COG2929Ribonuclease BrnT, toxin component of the BrnT-BrnA toxin-antitoxin systemDefense mechanisms [V] 0.92
COG3547TransposaseMobilome: prophages, transposons [X] 0.92

 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms87.16 %
UnclassifiedrootN/A12.84 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2088090007|LWFCAnN_GO09JKT01BBDW3All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Hyalangium → unclassified Hyalangium → Hyalangium sp. H56D21516Open in IMG/M
3300000231|TB_LI09_4DRAFT_10260930Not Available550Open in IMG/M
3300000571|JGI1358J11329_10131949Not Available755Open in IMG/M
3300002122|C687J26623_10047019All Organisms → cellular organisms → Bacteria → Proteobacteria1164Open in IMG/M
3300002558|JGI25385J37094_10034657All Organisms → cellular organisms → Bacteria1765Open in IMG/M
3300002561|JGI25384J37096_10015974All Organisms → cellular organisms → Bacteria2906Open in IMG/M
3300003859|Ga0031653_10103160All Organisms → cellular organisms → Bacteria747Open in IMG/M
3300005166|Ga0066674_10025038All Organisms → cellular organisms → Bacteria2607Open in IMG/M
3300005174|Ga0066680_10363769All Organisms → cellular organisms → Bacteria921Open in IMG/M
3300005186|Ga0066676_10330729All Organisms → cellular organisms → Bacteria1015Open in IMG/M
3300005434|Ga0070709_11214688Not Available606Open in IMG/M
3300005446|Ga0066686_11071480All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium519Open in IMG/M
3300005553|Ga0066695_10805908All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium541Open in IMG/M
3300005556|Ga0066707_10420352All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium868Open in IMG/M
3300005559|Ga0066700_10192597All Organisms → cellular organisms → Bacteria1404Open in IMG/M
3300005829|Ga0074479_10354255All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira defluvii6571Open in IMG/M
3300005833|Ga0074472_10021297All Organisms → cellular organisms → Bacteria1883Open in IMG/M
3300005943|Ga0073926_10093329All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Hyalangium → unclassified Hyalangium → Hyalangium sp. H56D21610Open in IMG/M
3300006791|Ga0066653_10031638All Organisms → cellular organisms → Bacteria2089Open in IMG/M
3300006794|Ga0066658_10099033Not Available1376Open in IMG/M
3300006872|Ga0101947_1003843All Organisms → cellular organisms → Bacteria14150Open in IMG/M
3300006872|Ga0101947_1019141All Organisms → cellular organisms → Bacteria1282Open in IMG/M
3300007004|Ga0079218_13707974Not Available519Open in IMG/M
3300007351|Ga0104751_1012709All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira moscoviensis7114Open in IMG/M
3300009012|Ga0066710_100039937All Organisms → cellular organisms → Bacteria5646Open in IMG/M
3300009012|Ga0066710_100401369All Organisms → cellular organisms → Bacteria2043Open in IMG/M
3300009012|Ga0066710_101749116All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium943Open in IMG/M
3300009038|Ga0099829_10287738All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Hyalangium → unclassified Hyalangium → Hyalangium sp. H56D211346Open in IMG/M
3300009039|Ga0105152_10014842All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria3019Open in IMG/M
3300009089|Ga0099828_11443150All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Hyalangium → unclassified Hyalangium → Hyalangium sp. H56D21607Open in IMG/M
3300009090|Ga0099827_11329004All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium625Open in IMG/M
3300009444|Ga0114945_10000306All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira31316Open in IMG/M
3300009691|Ga0114944_1092162Not Available1150Open in IMG/M
3300009777|Ga0105164_10049691All Organisms → cellular organisms → Bacteria2256Open in IMG/M
3300009777|Ga0105164_10270210All Organisms → cellular organisms → Bacteria852Open in IMG/M
3300010301|Ga0134070_10029576All Organisms → cellular organisms → Bacteria1809Open in IMG/M
3300010325|Ga0134064_10315486All Organisms → cellular organisms → Bacteria600Open in IMG/M
3300010362|Ga0126377_11898076All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Hyalangium → unclassified Hyalangium → Hyalangium sp. H56D21671Open in IMG/M
3300010391|Ga0136847_12588357All Organisms → cellular organisms → Bacteria671Open in IMG/M
3300011444|Ga0137463_1278109All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Hyalangium → unclassified Hyalangium → Hyalangium sp. H56D21618Open in IMG/M
3300012189|Ga0137388_10506407All Organisms → cellular organisms → Bacteria1122Open in IMG/M
3300012204|Ga0137374_10061527All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira3764Open in IMG/M
3300012209|Ga0137379_10027926All Organisms → cellular organisms → Bacteria5428Open in IMG/M
3300012349|Ga0137387_10047351All Organisms → cellular organisms → Bacteria2855Open in IMG/M
3300012349|Ga0137387_10202236All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1427Open in IMG/M
3300012359|Ga0137385_10685108All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium857Open in IMG/M
3300012396|Ga0134057_1031327All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales723Open in IMG/M
3300012397|Ga0134056_1187999All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales886Open in IMG/M
3300012406|Ga0134053_1130485All Organisms → cellular organisms → Bacteria583Open in IMG/M
3300012918|Ga0137396_10108542All Organisms → cellular organisms → Bacteria1989Open in IMG/M
3300012918|Ga0137396_10442277All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp. CG24E964Open in IMG/M
3300012976|Ga0134076_10069889All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1355Open in IMG/M
3300012977|Ga0134087_10237750All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria830Open in IMG/M
3300014154|Ga0134075_10011879All Organisms → cellular organisms → Bacteria3374Open in IMG/M
3300015254|Ga0180089_1052905All Organisms → cellular organisms → Bacteria803Open in IMG/M
3300015360|Ga0163144_10049094All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira7543Open in IMG/M
3300017659|Ga0134083_10354715Not Available632Open in IMG/M
3300018059|Ga0184615_10038621All Organisms → cellular organisms → Bacteria2652Open in IMG/M
3300018071|Ga0184618_10017708All Organisms → cellular organisms → Bacteria2284Open in IMG/M
3300018074|Ga0184640_10022001All Organisms → cellular organisms → Bacteria2445Open in IMG/M
3300018079|Ga0184627_10027799All Organisms → cellular organisms → Bacteria2832Open in IMG/M
3300018084|Ga0184629_10568817Not Available582Open in IMG/M
3300018431|Ga0066655_10142582All Organisms → cellular organisms → Bacteria1410Open in IMG/M
3300018476|Ga0190274_11757699All Organisms → cellular organisms → Bacteria715Open in IMG/M
3300020057|Ga0163151_10000185All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira110247Open in IMG/M
3300020167|Ga0194035_1000043All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira77867Open in IMG/M
3300020186|Ga0163153_10124048All Organisms → cellular organisms → Bacteria1471Open in IMG/M
3300021080|Ga0210382_10064608Not Available1469Open in IMG/M
3300021357|Ga0213870_1000082All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira46124Open in IMG/M
3300022563|Ga0212128_10000283All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira36568Open in IMG/M
3300022563|Ga0212128_10516475All Organisms → cellular organisms → Bacteria729Open in IMG/M
(restricted) 3300023208|Ga0233424_10009486All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira5322Open in IMG/M
3300025160|Ga0209109_10092712All Organisms → cellular organisms → Bacteria1564Open in IMG/M
3300025165|Ga0209108_10044990Not Available2461Open in IMG/M
3300025173|Ga0209824_10157671All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Hyalangium → unclassified Hyalangium → Hyalangium sp. H56D21815Open in IMG/M
3300025173|Ga0209824_10325512All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium526Open in IMG/M
3300025174|Ga0209324_10644666All Organisms → cellular organisms → Bacteria616Open in IMG/M
3300025289|Ga0209002_10697989All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium530Open in IMG/M
3300025312|Ga0209321_10097426All Organisms → cellular organisms → Bacteria1634Open in IMG/M
3300025318|Ga0209519_10618127Not Available594Open in IMG/M
3300025325|Ga0209341_10469497All Organisms → cellular organisms → Bacteria1008Open in IMG/M
3300025326|Ga0209342_10177689All Organisms → cellular organisms → Bacteria1912Open in IMG/M
3300025326|Ga0209342_11245211Not Available545Open in IMG/M
3300025326|Ga0209342_11294567Not Available529Open in IMG/M
3300025327|Ga0209751_11289198Not Available526Open in IMG/M
3300025843|Ga0209182_10020550All Organisms → cellular organisms → Bacteria1973Open in IMG/M
3300025910|Ga0207684_10065681All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp. CG24E3080Open in IMG/M
3300026296|Ga0209235_1266831All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Hyalangium → unclassified Hyalangium → Hyalangium sp. H56D21525Open in IMG/M
3300026297|Ga0209237_1039578All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium2480Open in IMG/M
3300026310|Ga0209239_1164010All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium861Open in IMG/M
3300026325|Ga0209152_10138561All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp.926Open in IMG/M
3300026326|Ga0209801_1027747All Organisms → cellular organisms → Bacteria2704Open in IMG/M
3300026334|Ga0209377_1154316All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium863Open in IMG/M
3300026548|Ga0209161_10033711All Organisms → cellular organisms → Bacteria3504Open in IMG/M
3300027748|Ga0209689_1019936All Organisms → cellular organisms → Bacteria4169Open in IMG/M
3300027835|Ga0209515_10043991All Organisms → cellular organisms → Bacteria3556Open in IMG/M
3300027882|Ga0209590_10020290All Organisms → cellular organisms → Bacteria3342Open in IMG/M
3300027900|Ga0209253_10211868All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira1541Open in IMG/M
3300028536|Ga0137415_10415003All Organisms → cellular organisms → Bacteria1151Open in IMG/M
3300031720|Ga0307469_10808402All Organisms → cellular organisms → Bacteria861Open in IMG/M
3300031772|Ga0315288_10328799All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1582Open in IMG/M
3300031949|Ga0214473_11811941All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium603Open in IMG/M
3300032180|Ga0307471_100329897All Organisms → cellular organisms → Bacteria1627Open in IMG/M
3300032342|Ga0315286_10086631All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira3347Open in IMG/M
3300033813|Ga0364928_0042185All Organisms → cellular organisms → Bacteria984Open in IMG/M
3300033814|Ga0364930_0000325All Organisms → cellular organisms → Bacteria19560Open in IMG/M
3300034164|Ga0364940_0216034All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp. CG24E563Open in IMG/M
3300034165|Ga0364942_0003876All Organisms → cellular organisms → Bacteria4420Open in IMG/M
3300034176|Ga0364931_0166491All Organisms → cellular organisms → Bacteria713Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil12.84%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil11.93%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil8.26%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil8.26%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil5.50%
SoilEnvironmental → Terrestrial → Soil → Loam → Unclassified → Soil5.50%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment4.59%
SedimentEnvironmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment4.59%
WastewaterEnvironmental → Aquatic → Freshwater → Drinking Water → Unchlorinated → Wastewater3.67%
Thermal SpringsEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Thermal Springs3.67%
Freshwater Microbial MatEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Microbial Mat2.75%
Freshwater Lake SedimentEnvironmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment1.83%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater1.83%
SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Sediment1.83%
Lake SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Lake Sediment1.83%
GroundwaterEnvironmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater1.83%
SoilEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Soil1.83%
Sediment (Intertidal)Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)1.83%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil1.83%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere1.83%
Drinking Water PipesEngineered → Built Environment → Unclassified → Unclassified → Unclassified → Drinking Water Pipes1.83%
Groundwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment0.92%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Sediment0.92%
Anoxic Zone FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater0.92%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Sediment0.92%
GroundwaterEnvironmental → Aquatic → Freshwater → Groundwater → Cave Water → Groundwater0.92%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.92%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil0.92%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.92%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil0.92%
SandEnvironmental → Terrestrial → Soil → Sand → Unclassified → Sand0.92%
Deep Subsurface AquiferEnvironmental → Terrestrial → Deep Subsurface → Aquifer → Unclassified → Deep Subsurface Aquifer0.92%

Visualization
Powered by ApexCharts



Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
2088090007Freshwater sediment microbial communities from Lake Washington, Seattle, for methane and nitrogen Cycles - from flow sorted anaerobic plus nitrateEnvironmentalOpen in IMG/M
3300000231Groundwater microbial communities from subsurface biofilms in sulfidic aquifier in Frasassi Gorge, Italy, sample from two redox zones- LI09_4EnvironmentalOpen in IMG/M
3300000571Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW60B uncontaminated upgradient, 5.4 mEnvironmentalOpen in IMG/M
3300002122Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_2EnvironmentalOpen in IMG/M
3300002558Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cmEnvironmentalOpen in IMG/M
3300002561Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cmEnvironmentalOpen in IMG/M
3300003859Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - BRP12 BREnvironmentalOpen in IMG/M
3300005166Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123EnvironmentalOpen in IMG/M
3300005174Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129EnvironmentalOpen in IMG/M
3300005186Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125EnvironmentalOpen in IMG/M
3300005434Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaGEnvironmentalOpen in IMG/M
3300005446Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135EnvironmentalOpen in IMG/M
3300005553Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144EnvironmentalOpen in IMG/M
3300005556Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156EnvironmentalOpen in IMG/M
3300005559Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149EnvironmentalOpen in IMG/M
3300005829Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.190_CBCEnvironmentalOpen in IMG/M
3300005833Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.174_CBKEnvironmentalOpen in IMG/M
3300005943Groundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T4_4-Nov-14EnvironmentalOpen in IMG/M
3300006791Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102EnvironmentalOpen in IMG/M
3300006794Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107EnvironmentalOpen in IMG/M
3300006872Biofilm microbial communities from drinking water pipes in SingaporeEngineeredOpen in IMG/M
3300007004Agricultural soil microbial communities from Utah to study Nitrogen management - NC CompostEnvironmentalOpen in IMG/M
3300007351Combined Assembly of Gp0115775, Gp0115815EnvironmentalOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009038Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaGEnvironmentalOpen in IMG/M
3300009039Lake sediment microbial communities from Lake Baikal, Russia to study Microbial Dark Matter (Phase II) - Lake Baikal sediment 0-5 cmEnvironmentalOpen in IMG/M
3300009089Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaGEnvironmentalOpen in IMG/M
3300009090Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaGEnvironmentalOpen in IMG/M
3300009444Hot spring microbial communities from Beatty, Nevada to study Microbial Dark Matter (Phase II) - OV2 TP3EnvironmentalOpen in IMG/M
3300009691Hot spring microbial communities from Beatty, Nevada to study Microbial Dark Matter (Phase II) - OV2 TP2EnvironmentalOpen in IMG/M
3300009777Wastewater microbial communities from Netherlands to study Microbial Dark Matter (Phase II) - VDW unchlorinated drinking waterEnvironmentalOpen in IMG/M
3300010301Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09082015EnvironmentalOpen in IMG/M
3300010325Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_0_1 metaGEnvironmentalOpen in IMG/M
3300010362Tropical forest soil microbial communities from Panama - MetaG Plot_22EnvironmentalOpen in IMG/M
3300010391Freshwater sediment microbial communities from Lake Superior, USA - Station SU-17. Combined Assembly of Gp0155404, Gp0155335, Gp0155336, Gp0155336, Gp0155403, Gp0155406EnvironmentalOpen in IMG/M
3300011444Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT800_2EnvironmentalOpen in IMG/M
3300012189Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaGEnvironmentalOpen in IMG/M
3300012204Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaGEnvironmentalOpen in IMG/M
3300012209Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaGEnvironmentalOpen in IMG/M
3300012349Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaGEnvironmentalOpen in IMG/M
3300012359Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaGEnvironmentalOpen in IMG/M
3300012396Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_0_2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012397Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_24_1 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012406Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_4_1 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012918Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaGEnvironmentalOpen in IMG/M
3300012976Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaGEnvironmentalOpen in IMG/M
3300012977Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300014154Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015EnvironmentalOpen in IMG/M
3300015254Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT860_16_10DEnvironmentalOpen in IMG/M
3300015360Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica - Oligotrophic Lake LV.19.BULKMAT1EnvironmentalOpen in IMG/M
3300017659Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300018059Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_coexEnvironmentalOpen in IMG/M
3300018071Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1EnvironmentalOpen in IMG/M
3300018074Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2EnvironmentalOpen in IMG/M
3300018079Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b1EnvironmentalOpen in IMG/M
3300018084Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1EnvironmentalOpen in IMG/M
3300018431Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104EnvironmentalOpen in IMG/M
3300018476Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 TEnvironmentalOpen in IMG/M
3300020057Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica - Oligotrophic Lake LV.19.MP5.IB-2EnvironmentalOpen in IMG/M
3300020167Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L239-20mEnvironmentalOpen in IMG/M
3300020186Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica - Oligotrophic Lake LV.19.MP6.IB-1EnvironmentalOpen in IMG/M
3300021080Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redoEnvironmentalOpen in IMG/M
3300021357Freshwater microbial communities from subterranean cave lake in Wind Cave National Park, South Dakota, United States - WICALVC2017EnvironmentalOpen in IMG/M
3300022563OV2_combined assemblyEnvironmentalOpen in IMG/M
3300023208 (restricted)Freshwater microbial communities from Lake Towuti, South Sulawesi, Indonesia - Watercolumn_Towuti2014_125_MGEnvironmentalOpen in IMG/M
3300025160Soil microbial communities from Rifle, Colorado, USA - sediment 10ft 2EnvironmentalOpen in IMG/M
3300025165Soil microbial communities from Rifle, Colorado, USA - sediment 10ft 1EnvironmentalOpen in IMG/M
3300025173Wastewater microbial communities from Netherlands to study Microbial Dark Matter (Phase II) - VDW unchlorinated drinking water (SPAdes)EnvironmentalOpen in IMG/M
3300025174Soil microbial communities from Rifle, Colorado, USA - sediment 19ft 3EnvironmentalOpen in IMG/M
3300025289Soil microbial communities from Rifle, Colorado, USA - sediment 16ft 2EnvironmentalOpen in IMG/M
3300025312Soil microbial communities from Rifle, Colorado, USA - sediment 16ft 4 - CSP-I_5_4EnvironmentalOpen in IMG/M
3300025318Soil microbial communities from Rifle, Colorado, USA - sediment 13ft 1EnvironmentalOpen in IMG/M
3300025325Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_2 (SPAdes)EnvironmentalOpen in IMG/M
3300025326Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 16_2 (SPAdes)EnvironmentalOpen in IMG/M
3300025327Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_1 (SPAdes)EnvironmentalOpen in IMG/M
3300025843Lake sediment microbial communities from Lake Baikal, Russia to study Microbial Dark Matter (Phase II) - Lake Baikal sediment 0-5 cm (SPAdes)EnvironmentalOpen in IMG/M
3300025910Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026296Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026297Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)EnvironmentalOpen in IMG/M
3300026310Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026325Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)EnvironmentalOpen in IMG/M
3300026326Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes)EnvironmentalOpen in IMG/M
3300026334Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141 (SPAdes)EnvironmentalOpen in IMG/M
3300026548Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)EnvironmentalOpen in IMG/M
3300027748Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 (SPAdes)EnvironmentalOpen in IMG/M
3300027835Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW60B uncontaminated upgradient, 5.4 m (SPAdes)EnvironmentalOpen in IMG/M
3300027882Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027900Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - BRP12 BR (SPAdes)EnvironmentalOpen in IMG/M
3300028536Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300031720Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515EnvironmentalOpen in IMG/M
3300031772Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_20EnvironmentalOpen in IMG/M
3300031949Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT98D197EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300032342Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G10_0EnvironmentalOpen in IMG/M
3300033813Sediment microbial communities from East River floodplain, Colorado, United States - 30_j17EnvironmentalOpen in IMG/M
3300033814Sediment microbial communities from East River floodplain, Colorado, United States - 55_j17EnvironmentalOpen in IMG/M
3300034164Sediment microbial communities from East River floodplain, Colorado, United States - 14_s17EnvironmentalOpen in IMG/M
3300034165Sediment microbial communities from East River floodplain, Colorado, United States - 19_s17EnvironmentalOpen in IMG/M
3300034176Sediment microbial communities from East River floodplain, Colorado, United States - 21_j17EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
LWFCAnN_096563802088090007Freshwater SedimentVIEWDGSHVPEELRSLPPGRYAIESVDRVGALTEEEEAGILAGLTELDAGRGIPLADVVREIIRGGTSKR
TB_LI09_4DRAFT_1026093023300000231GroundwaterMEAKLIKWDGRHIPEELWSLPPGRYAIEPVDYPTALTEQEEMGILAALEELDAGKGIPLADVVREIRSGSVS*
JGI1358J11329_1013194923300000571GroundwaterMKPKVIEWDGTHIPRALRELPPGRYAVEPIDNLPPLALEEDAGIVDGLDQLDAGRGIPLADVVREIRGGPSGR*
C687J26623_1004701923300002122SoilMKLNVIDWDGSHIPEALRELLPGRYAVEPIDDLPPLTPDEDAGLLAGLDQLDAGRGIPLADIVREIRRDMSGR*
JGI25385J37094_1003465743300002558Grasslands SoilMKPRVIDWDGSHLPEALRELPPGRYAVEPIDDLPPLTPEEDAGLLAALDQLDAGRGIPLADVVREIRRGSSKR*
JGI25384J37096_1001597453300002561Grasslands SoilMKPRVIDWDGSHLPEALRELPPGRYAVEPIDDLPPLTPEEDAGLRAALDQLDAGRGIPLADVVREIRRGSSKR*
Ga0031653_1010316023300003859Freshwater Lake SedimentMEPKVIQWDGSHVPEELRGLPPGRYAXESVDQVGILTEEEEAGLLAGLTELDAGRGIPLADVVREIIRGGTARR*
Ga0066674_1002503833300005166SoilMKPRVIDWDGSHLPEALRELPPGRYAVEPIDDLSPLTPEEDVGLRAALDQLDAGRGIPLADVVREIRRGSSKR*
Ga0066680_1036376933300005174SoilMKPKVIEWDGTHISQALRELPAGRYAVEPIDNLPPLTLEEDAGIVDGLDQLDAGRGIPLADVVREIRGGPSKR*
Ga0066676_1033072933300005186SoilMGPKVIKWDGSHVPEELRSLPPGQYAIESVDRVDTLTEEEEAGILAGLTDLDAGRGIPLADVVREIIRGGTSKR*
Ga0070709_1121468813300005434Corn, Switchgrass And Miscanthus RhizosphereMEPKVIQWDGSHVPEELRSLPPGRYAIESVDRVGILTEEEEVGLLAGLTELDAGRGIPLADVVREIIRGSTSKR*
Ga0066686_1107148013300005446SoilMKPRVIDWDGSRLPEALRELPPGRYAVEPIDDLPPLTPEEDVGLRAALDQLDAGRGIPLADVVREIRRGSSKR*
Ga0066695_1080590813300005553SoilMKPRVIDWDGSHLPEALRELPPGRYAVEPIDDLPPLTPEEDVGLRAALDQLDAGRGIPLADVVREIRR
Ga0066707_1042035223300005556SoilMKPKVIEWDGTHIPQALRELPPGRYAVEPIDNLPPLTREEDAGIAAGLDQLDAGRGIPLADVVREIRGGQFRR*
Ga0066700_1019259733300005559SoilMKPRVIDWDGSHLPEALRELPPGRYAVEPIDDLSPLTPEEDVGLGAALDQLDAGRGIPLADVVREIRRGSSKR*
Ga0074479_1035425553300005829Sediment (Intertidal)MEPKVIEWDGSHVPEELRSLPPGRYAIESVDQVGGLTEEEEAGLLAGLTELDAGRGIPLADVVREIIRGGTAKR*
Ga0074472_1002129753300005833Sediment (Intertidal)MEPKVIEWDGSHVPEELRSLPPGRYAIESVDQVGVLSEEEEAGLLAGLTELDAGRGIPLADVVREIIRGGTAKR*
Ga0073926_1009332913300005943SandMEPKVIEWDGSHVPEELRSLPPGRYAIESVDQVGVLTEEEEAGLLAGLTELDAGRGIPLADVVREIIRGGTAKR*
Ga0066653_1003163833300006791SoilMKPRVIDWDGSHLPEALLELPPGRYAVEPIDDLPPLTPEEDAGLLAALDQLDAGRGIPLADIVREIRRGSSKR*
Ga0066658_1009903323300006794SoilMEPKVIKWDGSHVPEELRSLPPGQYAIESIDRVGVLTEEEEAGLLAGLTELDAGRGIPLADVVREIIRGGTSKR*
Ga0101947_1003843193300006872Drinking Water PipesMGTKVIKWDGVHLPEELQALPPGRYAIESLDRVEPLTEEEERGIMTGLADLDAGRGTPLADVVREIRSGSSRR*
Ga0101947_101914143300006872Drinking Water PipesMRPTVIKWDGSHVPEELRELPPGRYAIESIDQIGTMTEEEEAGIHAGLSELDAGKGIPLSDVVREIIRGSTTSR*
Ga0079218_1370797413300007004Agricultural SoilMGPKVIKWDGSHVPEELRSLPPGQYAIESVDRVDTLTEEEEAGILAGLADLDAGRGIPLTDVVREI
Ga0104751_101270973300007351Deep Subsurface AquiferMTPKVIEWDGSHLPKELEKLPPGRYAIESVDEAPALTEEEEKGIVVALAALDAGEGIPLAKVVREIRGGPSRR*
Ga0066710_10003993733300009012Grasslands SoilMKPKVIEWDGTHISQALRELPAGRYAVEPIDNLPPLTLEEDAGIVDGLDQLDAGRGIPLADVVREIRGGPSKR
Ga0066710_10040136923300009012Grasslands SoilMGPKVIKWDGSHVPEELRSLPPGQYAIESVDRVDTLTEEEEAGILAGLTDLDAGRGIPLADVVREIIRGGTSKR
Ga0066710_10174911623300009012Grasslands SoilMKPKVIEWDGTHIPQALRELPPGRYAVEPIDNLPPLTREEDAGIAAGLDQLDAGRGIPLADVVREIRGGQFRR
Ga0099829_1028773823300009038Vadose Zone SoilMEPKVIDWDGSHVPEELRSLPPGRYAIEPVDQLGPLSDEEERGILAGLAELDSGRGIPLADVVREIRSGSLNR*
Ga0105152_1001484243300009039Lake SedimentMEPKLIKWDGCHIPEELRSLPPGRYAIEPVDHPTSLTEQEEQGILAALEELDAGNGIPLADVLREIRSGSVS*
Ga0099828_1144315023300009089Vadose Zone SoilMEPKVIDWDGSHVPEELRSLPPGRYAIEPVDQLGPLSEEEERGILAGLAELDSGRGIPLADVVREIRSGSSNR*
Ga0099827_1132900423300009090Vadose Zone SoilMKPRVIDWDGSHLPEALRELPPGRYAVEPIDDLPPLTPEEDAGLLAALDQLDAGRGIPLA
Ga0114945_10000306193300009444Thermal SpringsMEPKVIDWDGSHVPDELRGLPPGRYAIEPVDQLGPLSEEEERGILVGLAELDSGRGIPLADVVREIRSGSSKR*
Ga0114944_109216223300009691Thermal SpringsMAAGMIQWDGNRVPERLRKLPPGRYGIESIDEPPQLSEAGEAGILASLDDLDAGRGIPLGDVVREIRGSTP*
Ga0105164_1004969123300009777WastewaterMEPKVIKWDGSHVPEELRSLPPGRYAIESVDQVGVLTEEEEAGLLAGLTELDAGRGIPLADVVREIIRGGTSNSMDQQIRKSGE*
Ga0105164_1027021023300009777WastewaterMKPRVIDWDGTRLPEELKKLPPGRYAIESIDQSSPLSEVEEKGILAGLDELDAGRGIPLTDVVREIRGSSPR*
Ga0134070_1002957643300010301Grasslands SoilMKPRVIDWDGSHLPEALRELPPGRYAVEPIDDLPPLTPEEDVGLRAALDQLDAGRGIPLADVVREIRRGSSKR*
Ga0134064_1031548613300010325Grasslands SoilFALGGSTMKPRVIDWDGSHLPEALRELPPGRYAVEPIDDLSPLTPEEDVGLRAALDQLDAGRGIPLADVVREIRRGSSKR*
Ga0126377_1189807613300010362Tropical Forest SoilMGPKVIKWDGSHVPEELRSLPPGRYAIESVDEVATLTEEEEAGILAGLADLDVGKNIPLADVVREIIRGGASKR*
Ga0136847_1258835713300010391Freshwater SedimentMGPKVIKWDGSHIPEELRSLPPGQYAIESVDRVDTLTEEEEAGILAGLTDLDAGRGIPLADVVREIIQGGTSKR*
Ga0137463_127810923300011444SoilMEPKVIKWDGSHVPEELRSLPPGRYAIESVDRVGILTEEEEAGLLAGLTELDAGRGIPLADVVREIIRGGTSKR*
Ga0137388_1050640723300012189Vadose Zone SoilMEPKVIDWDGSHVPEELRSLPPGRYAIEPVDQLGPLSEEEERGILAGLAELDSGRGIPLADVVQEIRSGSLNR*
Ga0137374_1006152743300012204Vadose Zone SoilMEPKVIDWDGSHVPEELRSLPPGRYAIEPVDQLGPLSEEEERGILAGLAELDSGRGIPLADVVREIRSGSSKR*
Ga0137379_1002792673300012209Vadose Zone SoilMKPRVIDWDGSHLPEALRELPPGRYAVEPIDDLPPLTPEEDEGLRAALDQLDAGRGIPLADVVREIRRGSSKR*
Ga0137387_1004735163300012349Vadose Zone SoilMKPRVIDWDGIHLPEALRELPPGRYAVEPIDDLSPLTPEEDVGLRAALDQLDAGRGIPLADVVREIRRGSSKR*
Ga0137387_1020223633300012349Vadose Zone SoilMKPRVIDWDGSHLPEALRELPPGRYAVEPIDDLPPLTPEEDAGLLAALDQLDAGRGIPLADIVREIRRGSSKR*
Ga0137385_1068510823300012359Vadose Zone SoilMKPRVIDWDGTHLPEALRELPPGRYAVEPIDDLPPLTPEEDEGLRAALDQLDAGRGIPLADVVREIRRGSSKR*
Ga0134057_103132713300012396Grasslands SoilGSHLPEALLELPPGRYAVEPIDDLPPLTPEEDAGLLAALDQLDAGRGIPLADVVREIRRGSSKR*
Ga0134056_118799913300012397Grasslands SoilMKPRVIDWDGSHLPEALRELPPGRYAVEPIDDLPPLTPEEDAGLLAALDQLDAGRGIPLADVVLEIRRGSSKR*
Ga0134053_113048523300012406Grasslands SoilGSHLPEALRELPPGRYAVEPIDDLSPLTPEEDVGLRAALDQLDAGRGIPLADIVREIRRGSSKR*
Ga0137396_1010854223300012918Vadose Zone SoilMEPKVIKWDGSHVPEELRSLPPGRYAIESVDRVGILTEEEEAGVLAGLTELDAGRGIPLADVVREIIRGGTSTR*
Ga0137396_1044227733300012918Vadose Zone SoilMEPKVIKWDGSHVPEELRSLPPGRYAIESVDRAGILTEEEEAGLLAGLTELDAGRGIPLADVVREIIRGGTSKR*
Ga0134076_1006988933300012976Grasslands SoilEALRELPPGRYAVEPIDDLSPLTPEEDAGLLAALDQLDAGRGIPLADVVREIRRGSSKR*
Ga0134087_1023775033300012977Grasslands SoilMKPRVIDWDGSHLPEALRELPPGRYAVEPIDDLSPLTPEEDVGLRAALDQLDAGRGIPLADVVREIQRGSSKR*
Ga0134075_1001187913300014154Grasslands SoilMKPRVIDWDGSHLPEALRELPPGRYAVEPIDDLPPLTQEEDEGLRAALDQLDAGRGIPLADVVREIRRGSSKR*
Ga0180089_105290513300015254SoilMEPKVIQWDGSHVPEELRSLPPGRYAIESVDQVGILTEEEEAGLLAGLTELDAGRGIPLADVVREIIQGGTSKR*
Ga0163144_10049094123300015360Freshwater Microbial MatMEPKVIKWDGSHIPEELRSLPPGRYAIESVDQGEVLTEEEEAGLLAGLTELDAGRGIPLADVVREIIRSGTAKR*
Ga0134083_1035471513300017659Grasslands SoilMKPKVPKVIEWDGTHIPQALRELPPGRYAVEPIDNLPPLTLEEDAGIVEGLDQLDAGRGIPLADVVREIRGGQFRR
Ga0184615_1003862133300018059Groundwater SedimentMEQKVIDWDGNHIPEALQKLPPGRYAIEPVEEISPLTEEEEAGILASLDELDAGGGIPLADVIREILGVQSGR
Ga0184618_1001770823300018071Groundwater SedimentMGPKVIKWDGSHVPEELRSLPPGQYAIESIDRVGVLTEEEEAGLLAGLTELDAGRGIPLADVVREIIRGGTSKR
Ga0184640_1002200113300018074Groundwater SedimentMEPKVIKWDGSHVPEELRSLPPGQYAIESVDRVGILTEEEEAGVLAGLTELDAGRGIPLADV
Ga0184627_1002779933300018079Groundwater SedimentMEPKVIKWDGSHVPEELRSLPPGQYAIESVDRVGILTEEEEAGVLAGLTDLDAGRGIPLADVVREIIRGGTSKR
Ga0184629_1056881723300018084Groundwater SedimentMEPKVIKWDGSHVPEELRSLPPGQYAIESVDRVDTLTEEEEAGILAGLTDLDAGRGIPLADVVREIIQGGTSKR
Ga0066655_1014258223300018431Grasslands SoilMKPRVIDWDGSHLPEALRELPPGRYAVEPIDDLSPLTPEEDVGLRAALDQLDAGRGIPLADVVREIRRGSSKR
Ga0190274_1175769933300018476SoilPEELRGLPPGQYAIESVDRVDTLTEEEEAGILAGLTDLDAGRGIPLADVVREIIQGGTSK
Ga0163151_100001851023300020057Freshwater Microbial MatMEPKVIKWDGSHIPEELRSLPPGRYAIESVDQGEVLTEEEEAGLLAGLTELDAGRGIPLADVVREIIRSGTAKR
Ga0194035_100004353300020167Anoxic Zone FreshwaterMETKVIKWDGSHVPEELRGLPPGRYAIESVDQVGVLTEEEEAGLLAGLTELDAGGGIPLADVVREIIRGGTAKR
Ga0163153_1012404843300020186Freshwater Microbial MatMEPKVIKWDGSHVPEELRSLPPGRYAIESVDQVGVITEEEEAGILAGLTELDAGRGIPLADVVREIIRGGTAKR
Ga0210382_1006460813300021080Groundwater SedimentMGPKVIKWDGSHVPEELRSLPPGQYAIESIDRVGVLTEEEEAGLLAGLTELDAGRGIPLADVVREI
Ga0213870_1000082363300021357FreshwaterMEPKVIDWDGSHVPESLRSFPPGRYAIEPVDQLRPLSEEEESGVLAGLAELDSGRGIPLADVVREIRSGSSKR
Ga0212128_10000283193300022563Thermal SpringsMEPKVIDWDGSHVPDELRGLPPGRYAIEPVDQLGPLSEEEERGILVGLAELDSGRGIPLADVVREIRSGSSKR
Ga0212128_1051647513300022563Thermal SpringsWDGNRVPERLRKLPPGRYGIESIDEPPQLSEAGEAGILASLDDLDAGRGIPLGDVVREIRGSTP
(restricted) Ga0233424_1000948663300023208FreshwaterMGPKVIEWDGSHLPKELQKLPPGRYAIEPVDHLEPLTPEEETGILAGLAELDAGHGSSLADLVCEIRSGKLRRS
Ga0209109_1009271223300025160SoilMKLNVIDWDGSHIPEALRELLPGRYAVEPIDDLPPLTPDEDAGLLAGLDQLDAGRGIPLADVVREIRRDMSGR
Ga0209108_1004499043300025165SoilMKLNVIDWDGSHIPEALRELPPGRYAVEPIDDLPPLTPDEDAGLLAGLDQLDAGRGIPLADIVREIRRDMSGR
Ga0209824_1015767133300025173WastewaterMEPKVIKWDGSHVPEELRSLPPGRYAIESVDQVGVLTEEEEAGLLAGLTELDAGRGIPLADVVREIIRGGTSNSMDQQIRKSGE
Ga0209824_1032551223300025173WastewaterMKPNVIDWDGSHIPEALRELPPGRYAVEPIDNLPPLTPEEDAGILAGLDQLDAGRGIPLADVVREIRGGSSKR
Ga0209324_1064466613300025174SoilFGAFGGEAMGPKVIHWDGRRIPEELQKLPPGRYTIEPIDQLPTLTQAEEAGILAGLDALDAGKGVPLSDVIREIRRGSSR
Ga0209002_1069798923300025289SoilKLNVIDWDGSHIPEALRELPPGRYAVEPIDDLPPLTPDEDAGLLAGLDQLDAGRGIPLADVVREIRRDMSGR
Ga0209321_1009742623300025312SoilMKLNVIDWDGSHIPEALRELPPGRYAVEPIDDLPPLTPDEDAGLLAGLDQLDAGRGIPLADVIREIRRGMSGR
Ga0209519_1061812723300025318SoilMKPKEIEWDGTHVPQALRELPPGRYAVEPIDNVPPLTLEEDAGIVDGLDQLDAGRGIPLADVVREIRGGPFRR
Ga0209341_1046949723300025325SoilMKPRVIDWDGSRIPEELKKLPPGQYAIEPVDQPPLSEVEEKGILTALEELDAGRGIPLADVVREIRGGPSGR
Ga0209342_1017768923300025326SoilMGPKVIHWDGRRIPEELQKLPPGRYTIEPIDQLPTLTQAEEAGILAGLDALDAGKGVPLSDVIREIRRGSSR
Ga0209342_1124521113300025326SoilMKPKVIEWDGTHVPQALRELPPGRYAVEPIDNVPPLTLEEDAGIVDGLDQLDAGRGIPLADVVREIRGGPFRR
Ga0209342_1129456713300025326SoilAPMKPRVIDWDGMGIPEELKKLPPGRYAIEPIDQPFPLSEAEEKGILAGLDELDAGKGIPLADVVREIRGSSSRR
Ga0209751_1128919813300025327SoilSEAYSMKPRVIDWDGSRIPEELKKLPPGQYAIEPVDQPPLSEVEEKGILTALEELDAGRGIPLADVVREIRGGPSGR
Ga0209182_1002055033300025843Lake SedimentMEPKLIKWDGCHIPEELRSLPPGRYAIEPVDHPTSLTEQEEQGILAALEELDAGNGIPLADVLREIRSGSVS
Ga0207684_1006568133300025910Corn, Switchgrass And Miscanthus RhizosphereHVPEELRSLPPGRYAIESVDRVGILTEEEEVGLLAGLTELDAGRGIPLADVVREIIRGSTSKR
Ga0209235_126683123300026296Grasslands SoilMEPKVIDWDGSHVPEELRSLPPGRYAIEPVDQLGPLSEEEERGILAGLAELDSGRGIPLADVVREIRSGSLNR
Ga0209237_103957833300026297Grasslands SoilMKPRVIDWDGSHLPEALRELPPGRYAVEPIDDLPPLTPEEDAGLLAALDQLDAGRGIPLADVVREIRRGSSKR
Ga0209239_116401023300026310Grasslands SoilMKPRVIDWDGSHLPEALRELPPGRYAVEPIDDLPPLTPEEDVGLRAALDQLDAGRGIPLADVVREIRRGSSKR
Ga0209152_1013856133300026325SoilMEPKVIKWDGSHVPEELRSLPPGQYAIESIDRVGVLTEEEEAGLLAGLTELDAGRGIPLADVVREIIRGGTSKR
Ga0209801_102774743300026326SoilMKPRVIDWDGSHLPEALRELPPGRYAVEPIDDLSPLTPEEDVGLGAALDQLDAGRGIPLADVVREIRRGSSKR
Ga0209377_115431613300026334SoilMKPRVIDWDGSHLPEALRELPPGRYAVEPIDDLSPLTPEEDVGLRAALDQLDAGRGIPL
Ga0209161_1003371153300026548SoilMKPRVIDWDGSHLPEALRELPPGRYAVEPIDDLSPLTPEEDVGLRAALDQLDAGRGIPLADLVREIRRGSSKR
Ga0209689_101993633300027748SoilMKPRVIDWDGSHLPEALRELPPGRYAVEPIDELSPLTPEEDVGLGAALDQLDAGRGIPLADVVREIRRGSSKR
Ga0209515_1004399193300027835GroundwaterMKPKVIEWDGTHIPRALRELPPGRYAVEPIDNLPPLALEEDAGIVDGLDQLDAGRGIPLADVVREIRGGPSGR
Ga0209590_1002029053300027882Vadose Zone SoilMKPKVIEWDGTHVPQALRELPPGRYAVEPIDNLPPLTLEEDAGIADGLDQLDAGRGIPLADVVREIRGGPSRR
Ga0209253_1021186833300027900Freshwater Lake SedimentMEPKVIQWDGSHVPEELRGLPPGRYAIESVDQVGILTEEEEAGLLAGLTELDAGRGIPLADVVREIIRGGTARR
Ga0137415_1041500333300028536Vadose Zone SoilMEPKVIKWDGSHVPEELRSLPPGRYAIESVDRVGILTEEEEAGVLAGLTELDAGRGIPLADVVREIIRGGTSKR
Ga0307469_1080840213300031720Hardwood Forest SoilIKWDGSHVPEELRSLPPGQYAIESIDRVGILTEEEEAGILAGLTELDAGRGIPLADVVREIIRGGTSER
Ga0315288_1032879933300031772SedimentMEPKLIKWDGCHIPEELRSLPPGRYAIEPVDHPTSLTEQEEQGIFAALEELDAGNGIPLADVLREIRSGSVS
Ga0214473_1181194113300031949SoilMKPNVIDWDGSHIPEALRELPPGRYAVEPIDNLPPLTPEEDAGILAGLDQLDAGRGIPLADVVREIRG
Ga0307471_10032989733300032180Hardwood Forest SoilMEPKVIKWDGSHVPEELRSLPPGQYAIESIDRVGILTEEEEAGILAGLTELDAGRGIPLADVVREIIRGGTSER
Ga0315286_1008663143300032342SedimentMEPKVIKWDGSHVPEELRSLPPGRYAIESVDRAGILTEEEEAGLLAGLTELDAGRGIPLADVVREIIRGGTSKR
Ga0364928_0042185_319_5553300033813SedimentMEPKVIKWDGSHVPEELRSLPPGRYAIESVDQVGILMEEEEAGLLAGLTELDAGRGIPLADVVHEISRGGTSKLWINR
Ga0364930_0000325_7154_73753300033814SedimentMEPKVIDWDGSHIPEELQKLPPGKYAIESIERLSPLTVEEEAGILDALNELDAGGGVPLGDVVRAIQAASSGR
Ga0364940_0216034_262_4983300034164SedimentMEPKVIKWDGSHVPEELRSLPPGRYAIESVDQVGILMEEEEAGLLAGLTELDAGRGIPLADVVREIIRGGTSKLWINR
Ga0364942_0003876_148_3723300034165SedimentMEPKVIKWDGSHVPEELRSLPPGQYAIESVDRVGILTEEEEAGVLAGLTELDAGRGIPLADVVREIIRGGTSKR
Ga0364931_0166491_152_3763300034176SedimentMEPKVIKWDGSHVPEELRSLPPGRYAIESVDQVGILTEEEEAGLLAGLTELDAGRGIPLADVVREIIRGGTSKR

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.