Metagenome Family F088773

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F088773
Family Type	Metagenome
Number of Sequences	109
Average Sequence Length	46 residues
Representative Sequence	MKKVIAVVFVALLSTGVMAQVKCQPDGRGGMCCWDVGTQGPFKPIGC
Number of Associated Samples	73
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Viruses
% of genes with valid RBS motifs	81.48 %
% of genes near scaffold ends (potentially truncated)	28.44 %
% of genes from short scaffolds (< 2000 bps)	68.81 %
Associated GOLD sequencing projects	69
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.43

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Duplodnaviria (41.284 % of family members)
NCBI Taxonomy ID	2731341
Taxonomy	All Organisms → Viruses → Duplodnaviria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater (29.358 % of family members)
Environment Ontology (ENVO)	Unclassified (64.220 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (56.881 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 26.67% β-sheet: 13.33% Coil/Unstructured: 60.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.43
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.43
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF04404	ERF	20.18
PF05866	RusA	11.01
PF11753	DUF3310	11.01
PF12705	PDDEXK_1	7.34
PF01612	DNA_pol_A_exo1	4.59
PF03837	RecT	2.75
PF11351	GTA_holin_3TM	1.83
PF13872	AAA_34	1.83
PF09954	DUF2188	1.83
PF14090	HTH_39	0.92
PF13203	DUF2201_N	0.92
PF13578	Methyltransf_24	0.92
PF01870	Hjc	0.92
PF05050	Methyltransf_21	0.92
PF00271	Helicase_C	0.92
PF02195	ParBc	0.92
PF16509	KORA	0.92
PF06048	DUF927	0.92
PF00239	Resolvase	0.92
PF11775	CobT_C	0.92
PF04221	RelB	0.92
PF08291	Peptidase_M15_3	0.92
PF01507	PAPS_reduct	0.92
PF00176	SNF2-rel_dom	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	Replication, recombination and repair [L]	11.01
COG3723	Recombinational DNA repair protein RecT	Replication, recombination and repair [L]	2.75
COG1591	Holliday junction resolvase Hjc, archaeal type	Replication, recombination and repair [L]	0.92
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.92
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	0.92
COG3077	Antitoxin component of the RelBE or YafQ-DinJ toxin-antitoxin module	Defense mechanisms [V]	0.92
COG5519	Predicted ATPase domain of Cch-like helicases, DUF927 family	General function prediction only [R]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	72.48 %
Unclassified	root	N/A	27.52 %

Name	Rank	Taxonomy	Distribution
Viruses	superkingdom	All Organisms → Viruses	55.05 %
Unclassified	root	N/A	27.52 %
cellular organisms	root	All Organisms → cellular organisms	17.43 %

Name	Rank	Taxonomy	Distribution
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	41.28 %
Unclassified	root	N/A	27.52 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	17.43 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	10.09 %
unclassified viruses	clade	All Organisms → Viruses → unclassified viruses	3.67 %

Name	Rank	Taxonomy	Distribution
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	41.28 %
Unclassified	root	N/A	27.52 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	10.09 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	8.26 %
unclassified DNA viruses	no rank	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses	3.67 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.92 %

Name	Rank	Taxonomy	Distribution
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	41.28 %
Unclassified	root	N/A	27.52 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	10.09 %
unclassified dsDNA viruses	no rank	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses	3.67 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2.75 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.83 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.92 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.92 %

Name	Rank	Taxonomy	Distribution
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	41.28 %
Unclassified	root	N/A	27.52 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	10.09 %
Prokaryotic dsDNA virus sp.	species	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	3.67 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.83 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.92 %
Oceanospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales	0.92 %
candidate division WWE3	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WWE3	0.92 %
Moraxellales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales	0.92 %

Name	Rank	Taxonomy	Distribution
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	39.45 %
Unclassified	root	N/A	27.52 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	10.09 %
Prokaryotic dsDNA virus sp.	species	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	3.67 %
unclassified Caudoviricetes	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes	1.83 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	1.83 %
Moraxellaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae	0.92 %
Oceanospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Oceanospirillaceae	0.92 %
Desulfurellales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfurellales	0.92 %
candidate division WWE3 bacterium CG10_big_fil_rev_8_21_14_0_10_32_10	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WWE3 → candidate division WWE3 bacterium CG10_big_fil_rev_8_21_14_0_10_32_10	0.92 %

Name	Rank	Taxonomy	Distribution
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	39.45 %
Unclassified	root	N/A	27.52 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	10.09 %
Prokaryotic dsDNA virus sp.	species	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	3.67 %
Podoviridae sp. ct2cs2	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Podoviridae sp. ct2cs2	1.83 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	1.83 %
Psychrobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Psychrobacter	0.92 %
unclassified Desulfurellales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfurellales → unclassified Desulfurellales	0.92 %
Marinobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Oceanospirillaceae → Marinobacterium	0.92 %
candidate division WWE3 bacterium CG10_big_fil_rev_8_21_14_0_10_32_10	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WWE3 → candidate division WWE3 bacterium CG10_big_fil_rev_8_21_14_0_10_32_10	0.92 %

Name	Rank	Taxonomy	Distribution
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	39.45 %
Unclassified	root	N/A	27.52 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	10.09 %
Prokaryotic dsDNA virus sp.	species	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	3.67 %
Podoviridae sp. ct2cs2	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Podoviridae sp. ct2cs2	1.83 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	1.83 %
Desulfurellales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfurellales → unclassified Desulfurellales → Desulfurellales bacterium	0.92 %
unclassified Psychrobacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Psychrobacter → unclassified Psychrobacter	0.92 %
Marinobacterium litorale	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Oceanospirillaceae → Marinobacterium → Marinobacterium litorale	0.92 %
candidate division WWE3 bacterium CG10_big_fil_rev_8_21_14_0_10_32_10	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WWE3 → candidate division WWE3 bacterium CG10_big_fil_rev_8_21_14_0_10_32_10	0.92 %

Name	Rank	Taxonomy	Distribution
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	39.45 %
Unclassified	root	N/A	27.52 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	10.09 %
Prokaryotic dsDNA virus sp.	species	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	3.67 %
Podoviridae sp. ct2cs2	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Podoviridae sp. ct2cs2	1.83 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	1.83 %
Psychrobacter sp. C 20.9	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Psychrobacter → unclassified Psychrobacter → Psychrobacter sp. C 20.9	0.92 %
Desulfurellales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfurellales → unclassified Desulfurellales → Desulfurellales bacterium	0.92 %
Marinobacterium litorale	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Oceanospirillaceae → Marinobacterium → Marinobacterium litorale	0.92 %
candidate division WWE3 bacterium CG10_big_fil_rev_8_21_14_0_10_32_10	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WWE3 → candidate division WWE3 bacterium CG10_big_fil_rev_8_21_14_0_10_32_10	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001851\|RCM31_10127224	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WWE3 → candidate division WWE3 bacterium CG10_big_fil_rev_8_21_14_0_10_32_10	507	Open in IMG/M
3300002197\|metazooDRAFT_1227224	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	736	Open in IMG/M
3300002307\|JGI24890J29729_1001252	All Organisms → cellular organisms → Bacteria	11935	Open in IMG/M
3300002408\|B570J29032_109766079	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1251	Open in IMG/M
3300002408\|B570J29032_109846843	Not Available	1623	Open in IMG/M
3300002471\|metazooDRAFT_1461041	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	665	Open in IMG/M
3300002471\|metazooDRAFT_1488183	All Organisms → cellular organisms → Bacteria → Proteobacteria	966	Open in IMG/M
3300002835\|B570J40625_100860584	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Podoviridae sp. ct2cs2	789	Open in IMG/M
3300002835\|B570J40625_101295405	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	605	Open in IMG/M
3300004240\|Ga0007787_10570330	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	566	Open in IMG/M
3300005527\|Ga0068876_10003826	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	10679	Open in IMG/M
3300005527\|Ga0068876_10453599	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	709	Open in IMG/M
3300005662\|Ga0078894_10236817	All Organisms → cellular organisms → Bacteria	1654	Open in IMG/M
3300005662\|Ga0078894_10659556	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	927	Open in IMG/M
3300005805\|Ga0079957_1054312	All Organisms → cellular organisms → Bacteria	2428	Open in IMG/M
3300006641\|Ga0075471_10111230	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1466	Open in IMG/M
3300006805\|Ga0075464_10406852	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	827	Open in IMG/M
3300006805\|Ga0075464_10437791	Not Available	797	Open in IMG/M
3300006917\|Ga0075472_10178603	Not Available	1043	Open in IMG/M
3300008072\|Ga0110929_1039539	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1912	Open in IMG/M
3300008108\|Ga0114341_10111652	Not Available	1644	Open in IMG/M
3300008108\|Ga0114341_10508243	Not Available	543	Open in IMG/M
3300008448\|Ga0114876_1001088	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	20528	Open in IMG/M
3300008450\|Ga0114880_1005482	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	6678	Open in IMG/M
3300009037\|Ga0105093_10195134	All Organisms → Viruses → Predicted Viral	1038	Open in IMG/M
3300009037\|Ga0105093_10589710	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	628	Open in IMG/M
3300009081\|Ga0105098_10495290	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	622	Open in IMG/M
3300009081\|Ga0105098_10631277	Not Available	561	Open in IMG/M
3300009082\|Ga0105099_10293005	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	952	Open in IMG/M
3300009159\|Ga0114978_10223697	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1180	Open in IMG/M
3300009165\|Ga0105102_10667845	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	580	Open in IMG/M
3300009183\|Ga0114974_10000299	Not Available	42111	Open in IMG/M
3300010354\|Ga0129333_10079048	All Organisms → Viruses → Predicted Viral	3052	Open in IMG/M
3300010354\|Ga0129333_10307801	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1417	Open in IMG/M
3300010354\|Ga0129333_10593794	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	962	Open in IMG/M
3300010354\|Ga0129333_10698930	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	872	Open in IMG/M
3300010354\|Ga0129333_11431219	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	568	Open in IMG/M
3300010354\|Ga0129333_11711827	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	511	Open in IMG/M
3300010885\|Ga0133913_10200596	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	5318	Open in IMG/M
3300010885\|Ga0133913_12448368	All Organisms → cellular organisms → Bacteria	1274	Open in IMG/M
3300010885\|Ga0133913_12756112	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1186	Open in IMG/M
3300011113\|Ga0151517_1226	Not Available	22678	Open in IMG/M
3300011113\|Ga0151517_1730	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	10850	Open in IMG/M
3300011339\|Ga0153700_11173	Not Available	11575	Open in IMG/M
3300013004\|Ga0164293_10000520	Not Available	30759	Open in IMG/M
3300013004\|Ga0164293_10010247	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	7872	Open in IMG/M
3300013004\|Ga0164293_10024967	All Organisms → cellular organisms → Bacteria	4984	Open in IMG/M
3300013005\|Ga0164292_10047458	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	3395	Open in IMG/M
(restricted) 3300013126\|Ga0172367_10411302	All Organisms → cellular organisms → Bacteria	763	Open in IMG/M
(restricted) 3300013132\|Ga0172372_10065428	All Organisms → Viruses → Predicted Viral	3336	Open in IMG/M
3300014819\|Ga0119954_1018307	All Organisms → cellular organisms → Bacteria	1440	Open in IMG/M
3300015050\|Ga0181338_1034206	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	768	Open in IMG/M
3300017747\|Ga0181352_1135201	Not Available	659	Open in IMG/M
3300017754\|Ga0181344_1009952	All Organisms → Viruses → Predicted Viral	3067	Open in IMG/M
3300017754\|Ga0181344_1074173	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1001	Open in IMG/M
3300017754\|Ga0181344_1154293	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	655	Open in IMG/M
3300017761\|Ga0181356_1036968	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1729	Open in IMG/M
3300017785\|Ga0181355_1171110	All Organisms → cellular organisms → Bacteria	868	Open in IMG/M
3300019784\|Ga0181359_1040845	All Organisms → cellular organisms → Bacteria	1797	Open in IMG/M
3300020183\|Ga0194115_10002007	Not Available	24888	Open in IMG/M
3300020554\|Ga0208599_1052525	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	581	Open in IMG/M
3300022179\|Ga0181353_1094428	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Podoviridae sp. ct2cs2	742	Open in IMG/M
3300022179\|Ga0181353_1158617	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	516	Open in IMG/M
3300022752\|Ga0214917_10015342	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	6659	Open in IMG/M
3300022752\|Ga0214917_10042192	All Organisms → Viruses → Predicted Viral	3212	Open in IMG/M
3300023174\|Ga0214921_10188421	All Organisms → Viruses → Predicted Viral	1313	Open in IMG/M
3300023174\|Ga0214921_10218839	All Organisms → Viruses → Predicted Viral	1162	Open in IMG/M
3300023184\|Ga0214919_10376779	Not Available	933	Open in IMG/M
3300024289\|Ga0255147_1099234	Not Available	536	Open in IMG/M
3300024506\|Ga0255168_1062705	All Organisms → cellular organisms → Bacteria → Proteobacteria	590	Open in IMG/M
3300027693\|Ga0209704_1252861	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	515	Open in IMG/M
3300027734\|Ga0209087_1136004	All Organisms → Viruses → Predicted Viral	1001	Open in IMG/M
3300027763\|Ga0209088_10190614	Not Available	882	Open in IMG/M
3300027782\|Ga0209500_10183481	Not Available	957	Open in IMG/M
3300027792\|Ga0209287_10439315	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	502	Open in IMG/M
3300027793\|Ga0209972_10427722	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	557	Open in IMG/M
3300027808\|Ga0209354_10216387	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Psychrobacter → unclassified Psychrobacter → Psychrobacter sp. C 20.9	774	Open in IMG/M
3300027816\|Ga0209990_10005225	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	8913	Open in IMG/M
3300027900\|Ga0209253_10333698	Not Available	1168	Open in IMG/M
3300028025\|Ga0247723_1012466	Not Available	3198	Open in IMG/M
3300028025\|Ga0247723_1107426	Not Available	696	Open in IMG/M
(restricted) 3300028571\|Ga0247844_1210446	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	726	Open in IMG/M
3300031758\|Ga0315907_10007375	Not Available	11470	Open in IMG/M
3300031787\|Ga0315900_10015079	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	9313	Open in IMG/M
3300031857\|Ga0315909_10338424	Not Available	1105	Open in IMG/M
3300031857\|Ga0315909_10350619	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfurellales → unclassified Desulfurellales → Desulfurellales bacterium	1079	Open in IMG/M
3300031963\|Ga0315901_11213841	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	510	Open in IMG/M
3300032050\|Ga0315906_10262681	Not Available	1578	Open in IMG/M
3300033980\|Ga0334981_0013636	All Organisms → Viruses → Predicted Viral	4569	Open in IMG/M
3300033993\|Ga0334994_0275703	Not Available	867	Open in IMG/M
3300033993\|Ga0334994_0334967	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	755	Open in IMG/M
3300033996\|Ga0334979_0000196	Not Available	48301	Open in IMG/M
3300033996\|Ga0334979_0000943	Not Available	21674	Open in IMG/M
3300033996\|Ga0334979_0141282	All Organisms → Viruses → Predicted Viral	1464	Open in IMG/M
3300034061\|Ga0334987_0002560	All Organisms → cellular organisms → Bacteria → Proteobacteria	17658	Open in IMG/M
3300034062\|Ga0334995_0016315	Not Available	6754	Open in IMG/M
3300034062\|Ga0334995_0194260	All Organisms → Viruses → Predicted Viral	1417	Open in IMG/M
3300034062\|Ga0334995_0335868	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Oceanospirillaceae → Marinobacterium → Marinobacterium litorale	974	Open in IMG/M
3300034101\|Ga0335027_0308489	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1065	Open in IMG/M
3300034101\|Ga0335027_0350279	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	977	Open in IMG/M
3300034101\|Ga0335027_0646378	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	636	Open in IMG/M
3300034106\|Ga0335036_0044938	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3404	Open in IMG/M
3300034106\|Ga0335036_0050617	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	3179	Open in IMG/M
3300034111\|Ga0335063_0002345	Not Available	11903	Open in IMG/M
3300034111\|Ga0335063_0505522	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	587	Open in IMG/M
3300034112\|Ga0335066_0594865	Not Available	573	Open in IMG/M
3300034116\|Ga0335068_0008747	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	6492	Open in IMG/M
3300034116\|Ga0335068_0335025	Not Available	742	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	98.17%
Terrestrial	Environmental → Terrestrial	1.83%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	88.99%
Marine	Environmental → Aquatic → Marine	9.17%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	1.83%

Habitat	Taxonomy	Distribution
Lake	Environmental → Aquatic → Freshwater → Lake	44.95%
Lentic	Environmental → Aquatic → Freshwater → Lentic	26.61%
Coastal	Environmental → Aquatic → Marine → Coastal	9.17%
Sediment	Environmental → Aquatic → Freshwater → Sediment	7.34%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	6.42%
Lotic	Environmental → Aquatic → Freshwater → Lotic	1.83%
River	Environmental → Aquatic → Freshwater → River	1.83%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	1.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	44.95%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	20.18%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	9.17%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	7.34%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	6.42%
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	5.50%
Unclassified	Environmental → Aquatic → Freshwater → Lotic → Unclassified	1.83%
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	1.83%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	1.83%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.92%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	29.36%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	16.51%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	7.34%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	7.34%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	5.50%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	5.50%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	3.67%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	2.75%
Lake	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Lake	2.75%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	2.75%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	2.75%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	2.75%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	1.83%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	1.83%
Deep Subsurface Sediment	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment	1.83%
Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic	0.92%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	0.92%
Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake	0.92%
Marine Plankton	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton	0.92%
Freshwater	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater	0.92%
Water Bodies	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Water Bodies	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001851	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM31, ROCA_DNA206_0.2um_MCP-S_C_3b	Environmental	Open in IMG/M
3300002197	Freshwater microbial communities from San Paulo Zoo lake, Brazil - DEC 2012	Environmental	Open in IMG/M
3300002307	Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-C2 co-culture F-D7	Environmental	Open in IMG/M
3300002408	Freshwater microbial communities from Lake Mendota, WI, sample - 15JUL2010 deep hole epilimnion (Lake Mendota Combined assembly, ASSEMBLY_DATE=20140123)	Environmental	Open in IMG/M
3300002471	Freshwater microbial communities from San Paulo Zoo lake, Brazil - MAY 2013	Environmental	Open in IMG/M
3300002835	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)	Environmental	Open in IMG/M
3300003375	Freshwater actinobacteria microbial communities from Trout Bog Lake, Wisconsin, USA - enrichment TB-E6	Environmental	Open in IMG/M
3300004240	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN	Environmental	Open in IMG/M
3300005527	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG	Environmental	Open in IMG/M
3300005662	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)	Environmental	Open in IMG/M
3300005805	Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA	Environmental	Open in IMG/M
3300006641	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_>0.8_DNA	Environmental	Open in IMG/M
3300006805	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA	Environmental	Open in IMG/M
3300006917	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_<0.8_DNA	Environmental	Open in IMG/M
3300008072	Microbial Communities in Water bodies, Singapore - Site MA	Environmental	Open in IMG/M
3300008108	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-C-NA	Environmental	Open in IMG/M
3300008448	Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigs	Environmental	Open in IMG/M
3300008450	Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigs	Environmental	Open in IMG/M
3300009037	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 1-3cm March2015	Environmental	Open in IMG/M
3300009081	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015	Environmental	Open in IMG/M
3300009082	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 1-3cm May2015	Environmental	Open in IMG/M
3300009159	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG	Environmental	Open in IMG/M
3300009165	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 1-3cm September2015	Environmental	Open in IMG/M
3300009183	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG	Environmental	Open in IMG/M
3300010354	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA	Environmental	Open in IMG/M
3300010885	northern Canada Lakes Co-assembly	Environmental	Open in IMG/M
3300011113	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep	Environmental	Open in IMG/M
3300011339	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Hannam	Environmental	Open in IMG/M
3300013004	Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG	Environmental	Open in IMG/M
3300013005	Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES117 metaG	Environmental	Open in IMG/M
3300013126 (restricted)	Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_10m	Environmental	Open in IMG/M
3300013132 (restricted)	Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_9.5m	Environmental	Open in IMG/M
3300014819	Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1011A	Environmental	Open in IMG/M
3300015050	Freshwater viral communities from Lake Michigan, USA - Sp13.VD.MM110.S.D	Environmental	Open in IMG/M
3300017747	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.S.N	Environmental	Open in IMG/M
3300017754	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.D	Environmental	Open in IMG/M
3300017761	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.N	Environmental	Open in IMG/M
3300017785	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.D.N	Environmental	Open in IMG/M
3300019784	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D	Environmental	Open in IMG/M
3300020183	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surface	Environmental	Open in IMG/M
3300020554	Freshwater microbial communities from Lake Mendota, WI - 17AUG2012 deep hole epilimnion (SPAdes)	Environmental	Open in IMG/M
3300022179	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.D.N	Environmental	Open in IMG/M
3300022752	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB	Environmental	Open in IMG/M
3300023174	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505	Environmental	Open in IMG/M
3300023184	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503	Environmental	Open in IMG/M
3300024289	Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h	Environmental	Open in IMG/M
3300024506	Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepB_8d	Environmental	Open in IMG/M
3300027693	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 1-3cm September2015 (SPAdes)	Environmental	Open in IMG/M
3300027734	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027763	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027782	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027792	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 1-3cm May2015 (SPAdes)	Environmental	Open in IMG/M
3300027793	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)	Environmental	Open in IMG/M
3300027808	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DD (SPAdes)	Environmental	Open in IMG/M
3300027816	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG (SPAdes)	Environmental	Open in IMG/M
3300027900	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - BRP12 BR (SPAdes)	Environmental	Open in IMG/M
3300028025	Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC	Environmental	Open in IMG/M
3300028571 (restricted)	Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch201714.5m_1	Environmental	Open in IMG/M
3300031758	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123	Environmental	Open in IMG/M
3300031787	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114	Environmental	Open in IMG/M
3300031857	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125	Environmental	Open in IMG/M
3300031963	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA116	Environmental	Open in IMG/M
3300032050	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA122	Environmental	Open in IMG/M
3300033980	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME09Aug2015-rr0007	Environmental	Open in IMG/M
3300033993	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037	Environmental	Open in IMG/M
3300033996	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004	Environmental	Open in IMG/M
3300034061	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028	Environmental	Open in IMG/M
3300034062	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045	Environmental	Open in IMG/M
3300034101	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107	Environmental	Open in IMG/M
3300034106	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131	Environmental	Open in IMG/M
3300034111	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Oct2011-rr0186	Environmental	Open in IMG/M
3300034112	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Aug2014-rr0191	Environmental	Open in IMG/M
3300034116	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-CONTROL-GENDONOR	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
RCM31_101272242	3300001851	Marine Plankton	MKKLVAVVLLSLSLSAIAQVKCESDGRGGMCCWDISKDGPWKPIGC*
metazooDRAFT_12272242	3300002197	Lake	MKKVIAVALLAMMSLSVSAQVKCVPDGKGGMCCWDVGQQGPFRPIGC*
JGI24890J29729_10012525	3300002307	Lentic	MKKLIALAFIALLSTNVMSAVKCAPDGRGGVCCWDTATDGIFKPVVC*
B570J29032_1097660794	3300002408	Freshwater	MKAIIIAVLTIGFIGSVSAQVKCQPDGRGGMCCWDVGTQGPFKPLGC*
B570J29032_1098468432	3300002408	Freshwater	MKKAIALIFVALLSTGVMAQTKCVPDGKGGMCCWDVGTQGPFKPIGC*
metazooDRAFT_14610412	3300002471	Lake	MKKLIAVVFIALMSTGVMAQVKCQPDGRGGMCCWDISKDGPWKPIGC*
metazooDRAFT_14881832	3300002471	Lake	MKKAIAVIFVALLSTGVMAQTKCVPDGKGGMCCWDVGSQGPFKPIGC*
B570J40625_1008605842	3300002835	Freshwater	MKKLIAVIFIALMSTGVMAQVKCESDGRGGMCCWDFDKQGPWKPIGC*
B570J40625_1012954052	3300002835	Freshwater	MKKLIAVAFIAMMSTGVMAQVKCESDGRGGMCCWDTKVNGPWKPIGC*
JGI26470J50227_10160064	3300003375	Freshwater	MKKMIAVALLALTCTSIYAATKCVPDGRGGMCCWDTETDGIYKPISC*
Ga0007787_105703301	3300004240	Freshwater Lake	MKKAIAIVLLSMMSLSVSAQVKCQPDGRGGMCCWDVGTQGPFKPIGC*
Ga0068876_1000382619	3300005527	Freshwater Lake	MKKVIVALFITLLTTGAMAQVKCESDGRGGMCCWDTRVNGPFRPIGC*
Ga0068876_104535991	3300005527	Freshwater Lake	MKKLIAVAFIALLSTGAMAQVKCESDGRGGMCCWDTKVNGPWKPIGC*
Ga0078894_102368172	3300005662	Freshwater Lake	MKKAIAFVFVALLSTGAMAQVKCESDGRGGMCCWDTRVNGPFRPIGC*
Ga0078894_106595561	3300005662	Freshwater Lake	MKKAIVAVFITLLTTSVMAQVKCESDGRGGMCCWDTKVNGPWKP
Ga0079957_10543122	3300005805	Lake	MKKVIAVVFVALLSTGVMAQVKCQPDGRGGMCCWDVGTQGPFKPIGC*
Ga0075471_101112302	3300006641	Aqueous	MKKAIAIVLLSMMSLSVSAQVKCVPDGKGGMCCWDVGQQGPFRPIGC*
Ga0075464_104068522	3300006805	Aqueous	MKKLIAVAFIALMSTGVMAQVKCESDGRGGMCCWDTKVNGPWKPIGC*
Ga0075464_104377913	3300006805	Aqueous	MKKAIAIVLLSMMSLGVSAQVKCVPDGKGGMCCWDVGQQGPFRPIGC*
Ga0075472_101786033	3300006917	Aqueous	MKKAIAIILLSMMSLSVSAQVKCVPDGKGGICCWDVGQQGPFRPIGC*
Ga0110929_10395393	3300008072	Water Bodies	MKKLLAVVLLAMMSYSVSAQVKCQPDGRGGMCCWDVGTQGPFKPIGC*
Ga0114341_101116521	3300008108	Freshwater, Plankton	KKVIVALFITLLTTGAMAQVKCESDGRGGMCCWDTRVNGPFRPIGC*
Ga0114341_105082431	3300008108	Freshwater, Plankton	IQMYPFKEITMKKAIAIVLLSMMSLSVSAQVKCQPDGRGGMCCWDVGTQGPFKPIGC*
Ga0114876_100108812	3300008448	Freshwater Lake	MYPFKEITMKKAIAIVLLSMMSLSVSAQVKCQPDGRGGMCCWDVGTQGPFKPIGC*
Ga0114880_10054826	3300008450	Freshwater Lake	MKKLIAVAFIALLSTGAMAQVKCESDGRGGMCCWDTKVNGPWKP
Ga0105093_101951342	3300009037	Freshwater Sediment	MKKLIAIAFIALLSTSVYSATKCVSDGRGGVCCWDTEKD
Ga0105093_105897102	3300009037	Freshwater Sediment	MKMKKAIVVLFVAMLSTSAMAVTKCESDGRGGMCCWDVNKD
Ga0105098_104952902	3300009081	Freshwater Sediment	MKKLVAVAFIALLSTGVMAQVKCVPDGRGGMCCWDINKDGPWKPIGC*
Ga0105098_106312772	3300009081	Freshwater Sediment	MYPFKEITMKKAIAIVLLSMMSLSVSAQVKCQPDGRGGMCCWDAGTQGPFKPIIC*
Ga0105099_102930052	3300009082	Freshwater Sediment	MKKLIAIAFIALLSTSVYSATKCVPDGRGGMCCWDTDRDGPWKPIGC*
Ga0114978_102236972	3300009159	Freshwater Lake	MYPFKEITMKKAIAIVLLSMISLSVSAQVKCQPDGRGGMCCWDVGTQGPFKPIGC*
Ga0105102_106678452	3300009165	Freshwater Sediment	MKKVIAVLFVAMLSTGVMAQVKCVPDGRGGMCCWDVQTQGPFKPISC*
Ga0114974_1000029924	3300009183	Freshwater Lake	MKKVIAIICLTLATTSVFAQVKCESDGRGGMCCWDTKVNGPWKPIGC*
Ga0129333_100790482	3300010354	Freshwater To Marine Saline Gradient	MYPFKEITMKKAIVIVLLSMMSLSVSAQVKCQPDGRGGMCCWDVGTQGPFKPIGC*
Ga0129333_103078012	3300010354	Freshwater To Marine Saline Gradient	MKKAIVAVFITLLTTSVMAQVKCESDGRGGMCCWDTKVNGPWKPIGC*
Ga0129333_105937941	3300010354	Freshwater To Marine Saline Gradient	GAVMKKAIAVVFVALLSTGVMAQTKCVPDGKGGMCCWDVGSQGPFKPIGC*
Ga0129333_106989302	3300010354	Freshwater To Marine Saline Gradient	AMMSTGVMAQVKCESDGRGGMCCWDTKVNGPWKPIGC*
Ga0129333_114312193	3300010354	Freshwater To Marine Saline Gradient	MKKAIVAVCITLLTTGVMAQVKCQPDGRGGMCCWDVGTQGPFKPIGC*
Ga0129333_117118272	3300010354	Freshwater To Marine Saline Gradient	MKKLIAVAFIAMMSTGVMAQVKCQPDGRGGMCCWDISKDGPWKPIGC*
Ga0133913_1020059617	3300010885	Freshwater Lake	MKKAIVAVFITLLTTGVMAQVKCESDGRGGMCCWDTKVNGPWKPIGC*
Ga0133913_124483682	3300010885	Freshwater Lake	MKKLIAVAFIALMSTGVMAQTKCVPDGKGGMCCWDVGTQGPWKPLGC*
Ga0133913_127561121	3300010885	Freshwater Lake	MVKYPFKEMSMKKAIAIVLLSMMSLGVSAQVKCVPDGKGGMCCWDVGQQGPFRPIGC*
Ga0151517_122617	3300011113	Freshwater	MKKAIVAVFISLLTTGVMAQVKCESDGRGGMCCWDVGKQGPWKPIGC*
Ga0151517_173012	3300011113	Freshwater	MKKLIAFAFAAVLSSSVFAQVKCESDGRGGMCCWDTKVYGPWKPISC*
Ga0153700_1117316	3300011339	Freshwater	MKKAIVAVFITLLTTGVMAQVKCESDGRGGMCCWDVGKQGPWKPIGC*
Ga0164293_1000052015	3300013004	Freshwater	MKKAIVVICVTLLTTGVMAQTKCVPDGRGGMCCWDVGTQGPFKPIGC*
Ga0164293_100102472	3300013004	Freshwater	MKKLIAVAIVALISTGVYAQTKCVPDGRGGMCCWDTRTQGPFKPIGC*
Ga0164293_100249675	3300013004	Freshwater	MKKLIAVAFIALLSTGVMAQVKCVPDGRGGMCCWDINKDGPWKPIGC*
Ga0164292_100474584	3300013005	Freshwater	MKKIIAVLFIAMMSTSVMAQVKCESDGRGGMCCWDIGKQGPWRPIGC*
(restricted) Ga0172367_104113022	3300013126	Freshwater	MKKAIVAVFITFLTTGAMAQVKCQPDGRGGMCCWDIGTEGPFKPIGC*
(restricted) Ga0172372_100654288	3300013132	Freshwater	MKKLVAIALLAMLSFSASAQVKCQPDGSGGMCCWDVGTQGPFKPISC*
Ga0119954_10183072	3300014819	Freshwater	MKKLIAFVFAAVLSSSVFAQVKCESDGRGGMCCWDTKVYGPWKPITC*
Ga0181338_10342061	3300015050	Freshwater Lake	MYLFKEITMKKAIAIVLLSMMSLSVSAQVKCQPDGRGGMCCWDVGTQGPFKP
Ga0181352_11352011	3300017747	Freshwater Lake	KSMKKAIAIVFVALLSTGVMAQMKCVPDGRGGMCCWDVGTQGPFKPIGC
Ga0181344_10099522	3300017754	Freshwater Lake	MKKLIAVAIVALMSTGVYAQTKCVPDGRGGMCCWDTRTQGPFKPIGC
Ga0181344_10741732	3300017754	Freshwater Lake	MKKLIAVAFIALMSTGVMAQTKCVPDGKGGMCCWDVGTQGPWKPLGC
Ga0181344_11542931	3300017754	Freshwater Lake	MKKLIAVAFIALMSTGVMAQVKCESDGRGGMCCWDTKVNGP
Ga0181356_10369682	3300017761	Freshwater Lake	MKKLIAVAFIAMMSTGVMAQVKCESDGRGGMCCWDTKVNGPWKLIGC
Ga0181355_11711102	3300017785	Freshwater Lake	MKKAIAFVFVALLSTGVMAQVKCESDGRGGMCCWDTRVNGPFRPIGC
Ga0181359_10408452	3300019784	Freshwater Lake	MKKLIAVAFIAMMSTGVMAQVKCESDGRGGMCCWDTKVNGPWKPIGC
Ga0194115_1000200716	3300020183	Freshwater Lake	MKKAIAVVFVALLSTGVMAQTKCVPDGKGGMCCWDVGSQGPFKPIGC
Ga0208599_10525252	3300020554	Freshwater	MKKAIAVVFVALLSTGVMAQVKCQPDGRGGMCCWDVGTQGPFKPLGC
Ga0181353_10944283	3300022179	Freshwater Lake	MKKLIAVAFIALMSTGVMAQVKCESDGRGGMCCWDTKVNGPWKPIGC
Ga0181353_11586172	3300022179	Freshwater Lake	MKKAIAFVFVALLSTGAMAQVKCESDGRGGMCCWDTKVNGPFRPFGC
Ga0214917_1001534213	3300022752	Freshwater	MKKAIAIVLLSMMSLSVSAQVKCVPDGKGGMCCWDVGTQGPFRPIGC
Ga0214917_100421922	3300022752	Freshwater	MKKLIAFAFAAMLSSSVFAQVKCESDGRGGMCCWDTKQYGPFKPLVC
Ga0214921_101884212	3300023174	Freshwater	MKKLIAFVFAAVLSSSVFAQVKCESDGRGGMCCWDTKVYGPWKPITC
Ga0214921_102188394	3300023174	Freshwater	MKKLIAFAFAAMLSSSVFAQVKCESDGRGGMCCWDTKVYGPWKPISC
Ga0214919_103767791	3300023184	Freshwater	KEMSMKKAIAIVLLSMMSLSVSAQVKCVPDGKGGMCCWDVGQQGPFRPIGC
Ga0255147_10992341	3300024289	Freshwater	MKKAIAVVFVALLSTGVMAQTKCVPDGKGGMCCWDVGSQGP
Ga0255168_10627051	3300024506	Freshwater	FVALLSTGVMAQTKCVPDGKGGMCCWDVGSQGPFKPIGC
Ga0209704_12528611	3300027693	Freshwater Sediment	MKKVIAVLFVAMLSTGVMAQVKCVPDGRGGMCCWDVQTQ
Ga0209087_11360044	3300027734	Freshwater Lake	MKKVIAIICLTLATTSVFAQVKCESDGRGGMCCWDTKVNGPWKPIGC
Ga0209088_101906143	3300027763	Freshwater Lake	MKKAIAIVLLSMISLSVSAQVKCQPDGRGGMCCWDVGTQGPFKPIGC
Ga0209500_101834811	3300027782	Freshwater Lake	MLKIQMYPFKEITMKKAIAIVLLSMISLSVSAQVKCQPDGRGGMCCWDVGTQGPFKPIGC
Ga0209287_104393152	3300027792	Freshwater Sediment	MKKLIAVAIVALISTGVYAQTKCVPDGRGGMCCWDVGTQGPW
Ga0209972_104277221	3300027793	Freshwater Lake	MKKLIAVAFIALLSTGAMAQVKCESDGRGGMCCWDTKVNGPWKPIGC
Ga0209354_102163872	3300027808	Freshwater Lake	MKKLIAVIFIALMSIGVMAQVKCESDGRGGMCCWDFDKQGPWKPI
Ga0209990_1000522518	3300027816	Freshwater Lake	MKKVIVALFITLLTTGAMAQVKCESDGRGGMCCWDTRVNG
Ga0209253_103336983	3300027900	Freshwater Lake Sediment	MKKVIALVFVAFLSTGVMAQTKCVPDGKGGMCCWDV
Ga0247723_10124667	3300028025	Deep Subsurface Sediment	MKKAIALVFVALLSTGAMAQTKCVPDGRGGMCCWDVQTQGPFKPIMC
Ga0247723_11074262	3300028025	Deep Subsurface Sediment	MKKLVAVALLAMLSFSVSAQVKCESDGRGGMCCWDTRTQGPFKPFGC
(restricted) Ga0247844_12104461	3300028571	Freshwater	LSFSVSAQVKCQPDGRGGMCCWDAGTQGPFEPIIC
Ga0315907_100073751	3300031758	Freshwater	VALFITLLTTGAMAQVKCESDGRGGMCCWDTRVNGPFRPIGC
Ga0315900_100150791	3300031787	Freshwater	MKKVIVALFITLLTTGAMAQVKCESDGRGGMCCWDTRV
Ga0315909_103384241	3300031857	Freshwater	KVIVALFITLLTTGAMAQVKCESDGRGGMCCWDTRVNGPFRPIGC
Ga0315909_103506194	3300031857	Freshwater	MKKIIAIVCLTLATTSVFAQVKCESDGRGGMCCWDTKVNGPWKPIGC
Ga0315901_112138411	3300031963	Freshwater	MYPFKEITMKKAIAIVLLSMMSLSVSAQVKCQPDGRGGMCCWDVGTQGPFKPIGC
Ga0315906_102626811	3300032050	Freshwater	ALFITLLTTGAMAQVKCESDGRGGMCCWDTRVNGPFRPIGC
Ga0334981_0013636_454_597	3300033980	Freshwater	MKKIIAVLFIAMMSTSVMAQVKCESDGRGGMCCWDIGKQGPWRPIGC
Ga0334994_0275703_395_538	3300033993	Freshwater	MKKAIALIFVALLSTGVMAQTKCVPDGKGGMCCWDVGTQGPFKPIGC
Ga0334994_0334967_236_379	3300033993	Freshwater	MKKLIAVIFIALMSTGLMAQVKCESDGRGGMCCWDFDKQGPWKPIGC
Ga0334979_0000196_39342_39485	3300033996	Freshwater	MKKLIAVAIVALISTGVYAQTKCVPDGRGGMCCWDVQTQGPFKPIGC
Ga0334979_0000943_19758_19901	3300033996	Freshwater	MKKAIVVICVTLLTTGVMAQTKCVPDGRGGMCCWDVGTQGPFKPIGC
Ga0334979_0141282_182_325	3300033996	Freshwater	MKKLIAVAFIALLSTGVMAQVKCVPDGRGGMCCWDINKDGPWKPIGC
Ga0334987_0002560_16747_16890	3300034061	Freshwater	MKKLIAVAIVALISTGVYAQTKCVPDGRGGMCCWDIKTQGPFKPIGC
Ga0334995_0016315_3903_4046	3300034062	Freshwater	MKAIIIAVLTIGFIGSVSAQVKCQPDGRGGMCCWDVGTQGPFKPLGC
Ga0334995_0194260_2_139	3300034062	Freshwater	KLIAVIFIALMSTGVMAQVKCESDGRGGMCCWDFDKQGPWKPIGC
Ga0334995_0335868_718_861	3300034062	Freshwater	MKKLIAVAFIALMSTGVMAQVKCEPDGRGGMCCWDIRKDGPWKPIGC
Ga0335027_0308489_371_514	3300034101	Freshwater	MKKLIAFAFAAVLSSSVFAQVKCESDGRGGMCCWDTKVYGPFKPISC
Ga0335027_0350279_61_204	3300034101	Freshwater	MKKLIAVAFVAMMSTGVMAQVKCESDGRGGMCCWDTKVNGPWKPIGC
Ga0335027_0646378_3_125	3300034101	Freshwater	MKKAIVAVFITLLTTGVMAQVKCESDGRGGMCCWDVGKQGP
Ga0335036_0044938_85_228	3300034106	Freshwater	MKKAIAVLFVAMLSTGVMAQVKCVPDGRGGMCCWDISKDGPFKPIGC
Ga0335036_0050617_1_135	3300034106	Freshwater	MKKLIVMAFIALMSTGVMAQVKCVPDGRGGMCCWDIGKDGPWKPI
Ga0335063_0002345_7202_7345	3300034111	Freshwater	MKKAIAFVFVAMLSTGVMAQVKCESDGRGGMCCWDTRVNGPWKPIGC
Ga0335063_0505522_3_143	3300034111	Freshwater	KKLIAVAFIAMMSTGVMAQVKCESDGRGGMCCWDTKVNGPWKPIGC
Ga0335066_0594865_2_118	3300034112	Freshwater	MKKLIAVIFIALMSTGVMAQVKCESDGRGGMCCWDFDKQ
Ga0335068_0008747_5654_5797	3300034116	Freshwater	MKKLIAVIFIALMSTGVMAQVKCESDGRGGMCCWDIGKQGPWKPIGC
Ga0335068_0335025_2_112	3300034116	Freshwater	LMSTGVMAQVKCESDGRGGMCCWDIGKQGPWKPIGC

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters