Metagenome / Metatranscriptome Family F088784

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F088784
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	48 residues
Representative Sequence	MERIMKARYKGICCKTGAIINVGDIIVYDSFTRKAWLTVDEDRMVVHVCCR
Number of Associated Samples	82
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Viruses
% of genes with valid RBS motifs	77.98 %
% of genes near scaffold ends (potentially truncated)	38.53 %
% of genes from short scaffolds (< 2000 bps)	82.57 %
Associated GOLD sequencing projects	72
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.38

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Predicted Viral (36.697 % of family members)
NCBI Taxonomy ID	10239 (predicted)
Taxonomy	All Organisms → Viruses → Predicted Viral

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake (29.358 % of family members)
Environment Ontology (ENVO)	Unclassified (60.550 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (58.716 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 36.71% Coil/Unstructured: 63.29%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.38
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.38
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF04266	ASCH	5.50
PF03747	ADP_ribosyl_GH	2.75
PF00476	DNA_pol_A	1.83
PF00268	Ribonuc_red_sm	0.92
PF06067	DUF932	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG2411	Predicted RNA-binding protein, contains PUA-like ASCH domain	General function prediction only [R]	5.50
COG3097	Uncharacterized conserved protein YqfB, UPF0267 family	Function unknown [S]	5.50
COG4405	Predicted RNA-binding protein YhfF, contains PUA-like ASCH domain	General function prediction only [R]	5.50
COG1397	ADP-ribosylglycohydrolase	Posttranslational modification, protein turnover, chaperones [O]	2.75
COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	Replication, recombination and repair [L]	1.83
COG0208	Ribonucleotide reductase beta subunit, ferritin-like domain	Nucleotide transport and metabolism [F]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	72.48 %
Unclassified	root	N/A	27.52 %

Name	Rank	Taxonomy	Distribution
Viruses	superkingdom	All Organisms → Viruses	46.79 %
Unclassified	root	N/A	27.52 %
cellular organisms	root	All Organisms → cellular organisms	25.69 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	36.70 %
Unclassified	root	N/A	27.52 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	25.69 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	10.09 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	36.70 %
Unclassified	root	N/A	27.52 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	21.10 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	10.09 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	36.70 %
Unclassified	root	N/A	27.52 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	10.09 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.92 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	36.70 %
Unclassified	root	N/A	27.52 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	10.09 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	0.92 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	36.70 %
Unclassified	root	N/A	27.52 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	7.34 %
Herelleviridae	family	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Herelleviridae	0.92 %
Gammaproteobacteria bacterium TMED104	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium TMED104	0.92 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	36.70 %
Unclassified	root	N/A	27.52 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	7.34 %
Bastillevirinae	subfamily	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Herelleviridae → Bastillevirinae	0.92 %
Gammaproteobacteria bacterium TMED104	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium TMED104	0.92 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002470\|metazooDRAFT_1349034	Not Available	596	Open in IMG/M
3300003277\|JGI25908J49247_10034873	All Organisms → Viruses → Predicted Viral	1397	Open in IMG/M
3300003277\|JGI25908J49247_10122410	All Organisms → cellular organisms → Bacteria	616	Open in IMG/M
3300003393\|JGI25909J50240_1015528	All Organisms → Viruses → Predicted Viral	1806	Open in IMG/M
3300003393\|JGI25909J50240_1086792	All Organisms → cellular organisms → Bacteria → Proteobacteria	625	Open in IMG/M
3300003412\|JGI25912J50252_10085275	All Organisms → cellular organisms → Bacteria	785	Open in IMG/M
3300003499\|JGI25930J51415_1006764	All Organisms → Viruses → Predicted Viral	2396	Open in IMG/M
3300004282\|Ga0066599_100400828	All Organisms → cellular organisms → Bacteria	854	Open in IMG/M
3300004481\|Ga0069718_15409756	All Organisms → cellular organisms → Bacteria	856	Open in IMG/M
3300004763\|Ga0007746_1390528	Not Available	548	Open in IMG/M
3300005581\|Ga0049081_10044530	All Organisms → Viruses → Predicted Viral	1683	Open in IMG/M
3300005581\|Ga0049081_10054402	All Organisms → Viruses → Predicted Viral	1513	Open in IMG/M
3300005581\|Ga0049081_10089942	All Organisms → Viruses → Predicted Viral	1148	Open in IMG/M
3300005581\|Ga0049081_10107932	All Organisms → Viruses → Predicted Viral	1035	Open in IMG/M
3300005581\|Ga0049081_10158358	All Organisms → cellular organisms → Bacteria → Proteobacteria	826	Open in IMG/M
3300005581\|Ga0049081_10226268	All Organisms → cellular organisms → Bacteria → Proteobacteria	663	Open in IMG/M
3300005581\|Ga0049081_10280130	All Organisms → cellular organisms → Bacteria → Proteobacteria	578	Open in IMG/M
3300005582\|Ga0049080_10317766	All Organisms → cellular organisms → Bacteria → Proteobacteria	500	Open in IMG/M
3300006030\|Ga0075470_10032956	All Organisms → Viruses → Predicted Viral	1602	Open in IMG/M
3300006639\|Ga0079301_1187938	Not Available	597	Open in IMG/M
3300006641\|Ga0075471_10153699	All Organisms → Viruses → Predicted Viral	1215	Open in IMG/M
3300006641\|Ga0075471_10412559	Not Available	676	Open in IMG/M
3300006863\|Ga0075459_1051274	All Organisms → cellular organisms → Bacteria → Proteobacteria	695	Open in IMG/M
3300006863\|Ga0075459_1090487	All Organisms → cellular organisms → Bacteria	525	Open in IMG/M
3300008107\|Ga0114340_1024490	All Organisms → Viruses → Predicted Viral	3277	Open in IMG/M
3300008110\|Ga0114343_1021980	All Organisms → cellular organisms → Bacteria → Proteobacteria	5856	Open in IMG/M
3300008258\|Ga0114840_1010285	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1605	Open in IMG/M
3300008266\|Ga0114363_1084061	All Organisms → Viruses → Predicted Viral	1179	Open in IMG/M
3300008266\|Ga0114363_1173644	Not Available	691	Open in IMG/M
3300008448\|Ga0114876_1063242	All Organisms → Viruses → Predicted Viral	1608	Open in IMG/M
3300008450\|Ga0114880_1097500	All Organisms → Viruses → Predicted Viral	1143	Open in IMG/M
3300009068\|Ga0114973_10472877	Not Available	651	Open in IMG/M
3300009183\|Ga0114974_10163503	All Organisms → Viruses → Predicted Viral	1384	Open in IMG/M
3300009187\|Ga0114972_10000472	Not Available	30058	Open in IMG/M
3300009194\|Ga0114983_1038600	All Organisms → Viruses → Predicted Viral	1167	Open in IMG/M
3300009419\|Ga0114982_1160791	Not Available	694	Open in IMG/M
3300010966\|Ga0137675_1000004	Not Available	56483	Open in IMG/M
3300017701\|Ga0181364_1038500	Not Available	765	Open in IMG/M
3300017701\|Ga0181364_1063130	Not Available	571	Open in IMG/M
3300017722\|Ga0181347_1070865	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1028	Open in IMG/M
3300017761\|Ga0181356_1197578	Not Available	597	Open in IMG/M
3300017766\|Ga0181343_1203716	Not Available	541	Open in IMG/M
3300017778\|Ga0181349_1153874	Not Available	824	Open in IMG/M
3300017780\|Ga0181346_1340074	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	500	Open in IMG/M
3300017784\|Ga0181348_1177082	Not Available	780	Open in IMG/M
3300017785\|Ga0181355_1092928	All Organisms → Viruses → Predicted Viral	1253	Open in IMG/M
3300017785\|Ga0181355_1134538	All Organisms → Viruses → Predicted Viral	1005	Open in IMG/M
3300017785\|Ga0181355_1310888	All Organisms → cellular organisms → Bacteria → Proteobacteria	589	Open in IMG/M
3300018041\|Ga0181601_10277015	All Organisms → cellular organisms → Bacteria → Proteobacteria	941	Open in IMG/M
3300019784\|Ga0181359_1048921	All Organisms → Viruses → Predicted Viral	1632	Open in IMG/M
3300019784\|Ga0181359_1084999	All Organisms → Viruses → Predicted Viral	1180	Open in IMG/M
3300019784\|Ga0181359_1087674	All Organisms → Viruses → Predicted Viral	1158	Open in IMG/M
3300019784\|Ga0181359_1137460	All Organisms → cellular organisms → Bacteria → Proteobacteria	854	Open in IMG/M
3300019784\|Ga0181359_1144474	All Organisms → cellular organisms → Bacteria → Proteobacteria	823	Open in IMG/M
3300019784\|Ga0181359_1222537	All Organisms → cellular organisms → Bacteria → Proteobacteria	592	Open in IMG/M
3300020048\|Ga0207193_1314348	All Organisms → Viruses → Predicted Viral	1105	Open in IMG/M
3300020161\|Ga0211726_10476530	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	12830	Open in IMG/M
3300020205\|Ga0211731_10477229	All Organisms → cellular organisms → Bacteria → Proteobacteria	670	Open in IMG/M
3300021956\|Ga0213922_1081177	Not Available	674	Open in IMG/M
3300021961\|Ga0222714_10091389	All Organisms → Viruses → Predicted Viral	1952	Open in IMG/M
3300021962\|Ga0222713_10006647	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	10947	Open in IMG/M
3300022179\|Ga0181353_1030616	All Organisms → Viruses → Predicted Viral	1425	Open in IMG/M
3300022407\|Ga0181351_1095603	All Organisms → Viruses → Predicted Viral	1157	Open in IMG/M
3300022407\|Ga0181351_1112729	All Organisms → Viruses → Predicted Viral	1032	Open in IMG/M
3300024500\|Ga0255143_1038272	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Herelleviridae → Bastillevirinae	791	Open in IMG/M
3300025585\|Ga0208546_1096942	Not Available	663	Open in IMG/M
3300025635\|Ga0208147_1088734	All Organisms → cellular organisms → Bacteria → Proteobacteria	757	Open in IMG/M
3300025635\|Ga0208147_1124298	All Organisms → cellular organisms → Bacteria → Proteobacteria	614	Open in IMG/M
3300025732\|Ga0208784_1083540	All Organisms → cellular organisms → Bacteria → Proteobacteria	962	Open in IMG/M
3300025872\|Ga0208783_10187054	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	863	Open in IMG/M
3300026478\|Ga0255156_1056268	Not Available	716	Open in IMG/M
3300027114\|Ga0208009_1034724	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1030	Open in IMG/M
3300027499\|Ga0208788_1135283	Not Available	551	Open in IMG/M
3300027608\|Ga0208974_1021866	All Organisms → Viruses → Predicted Viral	1977	Open in IMG/M
3300027631\|Ga0208133_1131714	All Organisms → cellular organisms → Bacteria → Proteobacteria	579	Open in IMG/M
3300027644\|Ga0209356_1112296	All Organisms → cellular organisms → Bacteria → Proteobacteria	786	Open in IMG/M
3300027659\|Ga0208975_1023961	All Organisms → Viruses → Predicted Viral	1983	Open in IMG/M
3300027659\|Ga0208975_1058243	All Organisms → Viruses → Predicted Viral	1173	Open in IMG/M
3300027659\|Ga0208975_1088535	Not Available	909	Open in IMG/M
3300027710\|Ga0209599_10061646	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	986	Open in IMG/M
3300027710\|Ga0209599_10062023	Not Available	983	Open in IMG/M
3300027732\|Ga0209442_1029711	All Organisms → Viruses → Predicted Viral	2473	Open in IMG/M
3300027759\|Ga0209296_1103255	All Organisms → Viruses → Predicted Viral	1357	Open in IMG/M
3300027760\|Ga0209598_10000145	Not Available	54526	Open in IMG/M
3300027772\|Ga0209768_10415060	All Organisms → cellular organisms → Bacteria → Proteobacteria	531	Open in IMG/M
3300027785\|Ga0209246_10208088	Not Available	763	Open in IMG/M
3300027798\|Ga0209353_10008524	Not Available	5040	Open in IMG/M
3300027805\|Ga0209229_10104356	All Organisms → Viruses → Predicted Viral	1277	Open in IMG/M
3300027899\|Ga0209668_11062036	Not Available	545	Open in IMG/M
3300028025\|Ga0247723_1159909	All Organisms → cellular organisms → Bacteria → Proteobacteria	521	Open in IMG/M
3300031758\|Ga0315907_10006077	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	12911	Open in IMG/M
3300031758\|Ga0315907_10029890	Not Available	4931	Open in IMG/M
3300031784\|Ga0315899_10003309	Not Available	17578	Open in IMG/M
3300031857\|Ga0315909_10206323	All Organisms → Viruses → Predicted Viral	1551	Open in IMG/M
3300031963\|Ga0315901_10123430	All Organisms → Viruses → Predicted Viral	2354	Open in IMG/M
3300031963\|Ga0315901_10688228	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	760	Open in IMG/M
3300032092\|Ga0315905_10062530	All Organisms → Viruses → Predicted Viral	3774	Open in IMG/M
3300032093\|Ga0315902_10448091	All Organisms → Viruses → Predicted Viral	1145	Open in IMG/M
3300032116\|Ga0315903_10642864	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium TMED104	805	Open in IMG/M
3300033994\|Ga0334996_0443200	Not Available	597	Open in IMG/M
3300034012\|Ga0334986_0124463	All Organisms → Viruses → Predicted Viral	1515	Open in IMG/M
3300034050\|Ga0335023_0067012	All Organisms → Viruses → Predicted Viral	2089	Open in IMG/M
3300034062\|Ga0334995_0522401	All Organisms → cellular organisms → Bacteria → Proteobacteria	708	Open in IMG/M
3300034064\|Ga0335001_0410821	Not Available	726	Open in IMG/M
3300034093\|Ga0335012_0016500	Not Available	4417	Open in IMG/M
3300034104\|Ga0335031_0197072	All Organisms → Viruses → Predicted Viral	1366	Open in IMG/M
3300034106\|Ga0335036_0002063	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	17706	Open in IMG/M
3300034106\|Ga0335036_0316822	All Organisms → Viruses → Predicted Viral	1030	Open in IMG/M
3300034283\|Ga0335007_0065304	All Organisms → Viruses → Predicted Viral	2771	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	92.66%
Terrestrial	Environmental → Terrestrial	7.34%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	79.82%
Marine	Environmental → Aquatic → Marine	12.84%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	7.34%

Habitat	Taxonomy	Distribution
Lentic	Environmental → Aquatic → Freshwater → Lentic	43.12%
Lake	Environmental → Aquatic → Freshwater → Lake	22.94%
Coastal	Environmental → Aquatic → Marine → Coastal	9.17%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	8.26%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	7.34%
Unclassified	Environmental → Aquatic → Marine → Unclassified	2.75%
River	Environmental → Aquatic → Freshwater → River	1.83%
Pond	Environmental → Aquatic → Freshwater → Pond	1.83%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.92%
Creek	Environmental → Aquatic → Freshwater → Creek	0.92%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	41.28%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	22.02%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	9.17%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	8.26%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	7.34%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	2.75%
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	1.83%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.92%
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	0.92%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.92%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.92%
Unclassified	Environmental → Aquatic → Freshwater → Pond → Unclassified	0.92%
Sediment	Environmental → Aquatic → Freshwater → Pond → Sediment	0.92%
Unclassified	Environmental → Aquatic → Freshwater → Creek → Unclassified	0.92%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	0.92%

Habitat	Taxonomy	Distribution
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	29.36%
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	11.01%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	9.17%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	9.17%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	8.26%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface	6.42%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	4.59%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	4.59%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	1.83%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	1.83%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	1.83%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	1.83%
Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment	0.92%
Lake	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Lake	0.92%
Freshwater And Sediment	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment	0.92%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	0.92%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment	0.92%
Pond Fresh Water	Environmental → Aquatic → Freshwater → Pond → Unclassified → Pond Fresh Water	0.92%
Freshwater	Environmental → Aquatic → Freshwater → Pond → Sediment → Freshwater	0.92%
Freshwater	Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater	0.92%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	0.92%
Estuarine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine	0.92%
Deep Subsurface Sediment	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002470	Freshwater microbial communities from San Paulo Zoo lake, Brazil - FEB 2013	Environmental	Open in IMG/M
3300003277	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD	Environmental	Open in IMG/M
3300003393	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DD	Environmental	Open in IMG/M
3300003412	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.DD	Environmental	Open in IMG/M
3300003499	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.DN	Environmental	Open in IMG/M
3300004282	Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - Initial sediment	Environmental	Open in IMG/M
3300004481	Combined Assembly of Gp0112041, Gp0112042, Gp0112043	Environmental	Open in IMG/M
3300004763	Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.DD (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005581	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF	Environmental	Open in IMG/M
3300005582	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF	Environmental	Open in IMG/M
3300006030	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA	Environmental	Open in IMG/M
3300006639	Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11	Environmental	Open in IMG/M
3300006641	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_>0.8_DNA	Environmental	Open in IMG/M
3300006863	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_>0.8_DNA	Environmental	Open in IMG/M
3300008107	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA	Environmental	Open in IMG/M
3300008110	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-3-NA	Environmental	Open in IMG/M
3300008258	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample HABS-E2014-0110-3-NA	Environmental	Open in IMG/M
3300008266	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA	Environmental	Open in IMG/M
3300008448	Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigs	Environmental	Open in IMG/M
3300008450	Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigs	Environmental	Open in IMG/M
3300009068	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG	Environmental	Open in IMG/M
3300009183	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG	Environmental	Open in IMG/M
3300009187	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_EF_MetaG	Environmental	Open in IMG/M
3300009194	Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 RT	Environmental	Open in IMG/M
3300009419	Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT	Environmental	Open in IMG/M
3300010966	Freshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland - JEBV1bis, april 2016	Environmental	Open in IMG/M
3300017701	Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.S.N	Environmental	Open in IMG/M
3300017722	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.N	Environmental	Open in IMG/M
3300017761	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.N	Environmental	Open in IMG/M
3300017766	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.S.D	Environmental	Open in IMG/M
3300017778	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.D	Environmental	Open in IMG/M
3300017780	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.D.N	Environmental	Open in IMG/M
3300017784	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.D.N	Environmental	Open in IMG/M
3300017785	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.D.N	Environmental	Open in IMG/M
3300018041	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041407BS metaG (megahit assembly)	Environmental	Open in IMG/M
3300019784	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D	Environmental	Open in IMG/M
3300020048	Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915	Environmental	Open in IMG/M
3300020161	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1	Environmental	Open in IMG/M
3300020205	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_103 megahit1	Environmental	Open in IMG/M
3300021956	Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 29-17 MG	Environmental	Open in IMG/M
3300021961	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D	Environmental	Open in IMG/M
3300021962	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D	Environmental	Open in IMG/M
3300022179	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.D.N	Environmental	Open in IMG/M
3300022407	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.D	Environmental	Open in IMG/M
3300024500	Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Cont_RepC_0h	Environmental	Open in IMG/M
3300025585	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025635	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_<0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025732	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_>0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025872	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_>0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300026478	Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Atlam_RepA_8h	Environmental	Open in IMG/M
3300027114	Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_16 (SPAdes)	Environmental	Open in IMG/M
3300027499	Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11 (SPAdes)	Environmental	Open in IMG/M
3300027608	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)	Environmental	Open in IMG/M
3300027631	Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535 (SPAdes)	Environmental	Open in IMG/M
3300027644	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SN (SPAdes)	Environmental	Open in IMG/M
3300027659	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)	Environmental	Open in IMG/M
3300027710	Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)	Environmental	Open in IMG/M
3300027732	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.DD (SPAdes)	Environmental	Open in IMG/M
3300027759	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027760	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_EF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027772	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SD (SPAdes)	Environmental	Open in IMG/M
3300027785	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SN (SPAdes)	Environmental	Open in IMG/M
3300027798	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD (SPAdes)	Environmental	Open in IMG/M
3300027805	Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)	Environmental	Open in IMG/M
3300027899	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - PLP11 PL (SPAdes)	Environmental	Open in IMG/M
3300028025	Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC	Environmental	Open in IMG/M
3300031758	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123	Environmental	Open in IMG/M
3300031784	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112	Environmental	Open in IMG/M
3300031857	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125	Environmental	Open in IMG/M
3300031963	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA116	Environmental	Open in IMG/M
3300032092	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121	Environmental	Open in IMG/M
3300032093	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA117	Environmental	Open in IMG/M
3300032116	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA119	Environmental	Open in IMG/M
3300033994	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046	Environmental	Open in IMG/M
3300034012	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027	Environmental	Open in IMG/M
3300034050	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07May2013-rr0095	Environmental	Open in IMG/M
3300034062	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045	Environmental	Open in IMG/M
3300034064	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME14Nov2013-rr0054	Environmental	Open in IMG/M
3300034093	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jun2014-rr0072	Environmental	Open in IMG/M
3300034104	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120	Environmental	Open in IMG/M
3300034106	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131	Environmental	Open in IMG/M
3300034283	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
metazooDRAFT_13490342	3300002470	Lake	MLKTMKAKFKSICCKTGATINVGDIIVYDSVSRKAWLTVDDDRLFVTIS*
JGI25908J49247_100348734	3300003277	Freshwater Lake	MERIMKARYKGICCKTGAPINVGDIVVYDTVSRKVWLTVDDDRMVVHVCSR*
JGI25908J49247_101224103	3300003277	Freshwater Lake	MERIMKARYKGICCKTGAIINVGDIIVYDSSTRKAWLTVDEDRMVVHVCCR*
JGI25909J50240_10155287	3300003393	Freshwater Lake	MERIMKARYKGICCKTGAIINVGDIIVYDSXTXKAWLTVDEDRMVVHVCCR*
JGI25909J50240_10867921	3300003393	Freshwater Lake	CCKTGAIINVGDIIVYDSFTRKAWLTVDEDRMVVHVCSR*
JGI25912J50252_100852753	3300003412	Freshwater Lake	MERIMKARYKGICCKTGAIINVGDIIVYDSFTRKAWLTVDEDRMVVHVCCR*
JGI25930J51415_10067645	3300003499	Freshwater Lake	MEQVMKARYKGICCKTGAIINVGDIIVYDSVARKAWLTVDDDRLFVNFS*
Ga0066599_1004008282	3300004282	Freshwater	MERIMKAKYKGICCKTGAPINVGDIVVYDTVTRKVWLTVDEDRMFVNCVMCK*
Ga0069718_154097563	3300004481	Sediment	MERVMKAKYKGICCKTGAPINVGDIVVYDTVSRKVWLTVDEDRMFVNCVMCK*
Ga0007746_13905282	3300004763	Freshwater Lake	MERIMKARYKGICCKTGAIINVGDIIVYDSFTRKAWLTVDEDRMVVHVCSR*
Ga0049081_100445301	3300005581	Freshwater Lentic	KGICCKTGAIINVGDIIVYDSFTRKAWLTVDEDRMVVHVCCR*
Ga0049081_100544027	3300005581	Freshwater Lentic	MERVMKARYKGICCKTGAIINVGDIIVYDSFTRKAWLTVD
Ga0049081_100899422	3300005581	Freshwater Lentic	MERIMKARYKGICCRTGAIINVGDIIVYDSVSRKAWLTVDDDRMFVTIS*
Ga0049081_101079325	3300005581	Freshwater Lentic	MKARYKGICCKTGAIINVGDIIVYDSFTRKAWLTVDEDRM
Ga0049081_101583581	3300005581	Freshwater Lentic	ARYKGICCKTGAIINVGDIIVYDSFTRKAWLTVDEDRMVVHVCCK*
Ga0049081_102262683	3300005581	Freshwater Lentic	KGICCKTGAIINVGDIIVYDSFTRKAWLTVDEDRMVVHVCSR*
Ga0049081_102801303	3300005581	Freshwater Lentic	GICCKTGAPINVGDIVVYDTVSRKVWLTVDDDRMVVHVCSR*
Ga0049080_103177663	3300005582	Freshwater Lentic	KTGAIINVGDIIVYDSFTRKAWLTVDEDRMVVHVCCR*
Ga0075470_100329566	3300006030	Aqueous	MERIMKAKFKGICCKTGATINVGDIIVYDSVSRKAWLTVDIDRMVVHVCCR*
Ga0079301_11879383	3300006639	Deep Subsurface	MERVMKAKYKGICCRTGAPINVGDIVVYDTVTRKVWLTVDDDRMVMHVCSR*
Ga0075471_101536992	3300006641	Aqueous	MLKTMTAKFKGICCKTGAIINVGDIIVYDSVARKAWLTVDEDRMFVNFS*
Ga0075471_104125593	3300006641	Aqueous	MEQVMKARYKGICCKTGAIINVGDIIVYNRATRKAWLTVDEDRMVIHVCSR*
Ga0075459_10512741	3300006863	Aqueous	ICCKTGATINVGDIIVYDSVTRKAWLTVDDDRLFANFS*
Ga0075459_10904872	3300006863	Aqueous	MERIMKAKFKGICCKTGATINVGDIIVYDSVTRKAWLTVDEDRLFVNFS*
Ga0114340_102449012	3300008107	Freshwater, Plankton	MERVMKARYKGICCKTGAIINVGDIIVYDSFTRKAWLTVDEDRMVVPS*
Ga0114343_102198012	3300008110	Freshwater, Plankton	MERVMKARYKGICCKTGAIINVGDIIVYDSFTRKAWLTVDE
Ga0114840_10102852	3300008258	Freshwater, Plankton	MERIMKARYKGICCKTGAIINVGDIIVYNSATRKAWLTVDEDRMVVHVCCR*
Ga0114363_10840615	3300008266	Freshwater, Plankton	MKARYKGICCKTGAIINVGDIIVYDSFTRKAWLTVDEDRMVV
Ga0114363_11736444	3300008266	Freshwater, Plankton	MERIMKARYKGICCKTGAIINVGDIIVYDSFTRKAWLTVDED
Ga0114876_10632421	3300008448	Freshwater Lake	MERIMKARYKGICCRTGAIINVGDIIVYDSFTRKAWLTVDEDRMVVHVCCR*
Ga0114880_10975005	3300008450	Freshwater Lake	MERIMKARYKGICCKTGAIINVGDIIVYDSFTRKAWL
Ga0114973_104728773	3300009068	Freshwater Lake	MERIMKARYKGICCKTGAIINVGDIIVYDSFTRKAWLTVD
Ga0114974_101635032	3300009183	Freshwater Lake	MERIMKAKYKGICCKTGAIINVGDIVVYDTVSRKVWLTVDEDRMFVNLVMCK*
Ga0114972_1000047247	3300009187	Freshwater Lake	MERIMKARYKGICCKTGAIINVGDIIVYNSVTRKAWLTVDEDRMVVHVCCR*
Ga0114983_10386003	3300009194	Deep Subsurface	MERVMKAKFKGICCKTGATINVGDIIVYDSVSRKAWLTVDEDRMVVHVCCR*
Ga0114982_11607913	3300009419	Deep Subsurface	MKAKFKGICCKTGATINVGDIIVYDSVSRKAWLTVDEDRMVVHVCCR*
Ga0137675_100000484	3300010966	Pond Fresh Water	MERIMKAKYKGICCKTGAPINVGDIVVYDTVTKKVWLTVDEDRMVMHVCSR*
Ga0181364_10385003	3300017701	Freshwater Lake	MERIMKARYKGVCCRTGAIINVGDIIVYDSFTRKAWLTVDEDRMVVHVCCR
Ga0181364_10631302	3300017701	Freshwater Lake	MLKTMKAKFKGVCCKTGAIINVGDIVVYDTVSRKVWLTVDEDRMFVNVVMCK
Ga0181347_10708651	3300017722	Freshwater Lake	MERIMKARYKGICCKTGAIINVGDIIVYDSFTRKAWLTVDEDRMV
Ga0181356_11975783	3300017761	Freshwater Lake	MERIMKARYKGICCKTGAIINVGDIIVYDSFTRKAWLTVDEDRM
Ga0181343_12037162	3300017766	Freshwater Lake	MERIMKARYKGICCKTGAIINVGDIIVYDSFTRKAWLTVDEDRMFVNVVMCK
Ga0181349_11538741	3300017778	Freshwater Lake	MERIMKARYKGICCKTGAIINVGDIIVYDSSTRKAWL
Ga0181346_13400741	3300017780	Freshwater Lake	MLKTMTAKFKGICCKTGAIINVGDVIVYIIVARKAW
Ga0181348_11770821	3300017784	Freshwater Lake	MERIMKARYKGICCRTGAIINVGDIIVYDSSTRKAWLTVDEDRMVVHVCC
Ga0181355_10929282	3300017785	Freshwater Lake	MLKIMTAKFKGICCKTGAIINVGDIIVYDSVTRKAWLTVDDDRMFVNVVMCK
Ga0181355_11345385	3300017785	Freshwater Lake	GAIINVGDIIVYDSSTRKAWLTVDEDRMVVHVCCR
Ga0181355_13108881	3300017785	Freshwater Lake	RTTFGGNMERIMKARYKGICCKTGAIINVGDIIVYDSSTRKAWLTVDEDRMVVHVCCR
Ga0181601_102770152	3300018041	Salt Marsh	MERIMKAKFKGVCCKTGAIINVGDIIVYDSSTRKAWLTVDEDRMVVHVCCR
Ga0181359_10489211	3300019784	Freshwater Lake	MERIMKARYKGICCKTGAIINVGDIIVYDSSTRKAWLTVDEDRMVVHVCCR
Ga0181359_10849993	3300019784	Freshwater Lake	MERIMKARYKGICCKTGAPINVGDIVVYDTVSRKVWLTVDDDRMVVHVCSR
Ga0181359_10876744	3300019784	Freshwater Lake	MERVMKARYKGICCKTGAVINVGDIIVYDSVSRKAWLTVDEDRMFVNVVMCK
Ga0181359_11374603	3300019784	Freshwater Lake	MERIMKARYKGICCKTGAIINVGDIIVYDSFTRKAWLTVDEDRMVVHVCCR
Ga0181359_11444743	3300019784	Freshwater Lake	MERIMKARYKGICCKTGAIINVGDIIVYDSFTRKAWLTVDEDRMVVHVCSR
Ga0181359_12225372	3300019784	Freshwater Lake	MTKIMKAKYKGICCKTGAPINVGDIVVYDTVSRKVWLTVDEDRMFVNVVMCK
Ga0207193_13143484	3300020048	Freshwater Lake Sediment	QAWCYLHEEFRMTKIMKAKYKGICCKTGAPINVGDIVVYDTVSRKVWLTVDEDRMFVIFS
Ga0211726_104765309	3300020161	Freshwater	MERIMKAKYKGICCKTGAPINVGDIVVYDTVTRKVWLTVDIDRMVVHVCCK
Ga0211731_104772292	3300020205	Freshwater	MERIMKARYKGICCKTGAIINVGDIIVYDSFTRKVWLTVDIDRMVVHVCCK
Ga0213922_10811771	3300021956	Freshwater	MLKIIPAKFKGICCKTGATINVGDIIVYDSVTRKAWLTVDEDRMFVNVVMCK
Ga0222714_100913895	3300021961	Estuarine Water	MERIMKARYKGICCKTRAIINVGDIIVYDSFTRKAWLTVDEDRMVVHVCCK
Ga0222713_1000664726	3300021962	Estuarine Water	MERIMKARYKGICCKTGAIINVGDIIVYDSFTRKAWLTVDEDRMVVHVCCK
Ga0181353_10306165	3300022179	Freshwater Lake	MEQVMKARYKGICCKTGAIINVGDIIVYNRATRKAWLTVDEDRMVVHVCCR
Ga0181351_10956035	3300022407	Freshwater Lake	MERIMKARYKGICCKTGAIINVGDIIVYDSSTRKAWLTVD
Ga0181351_11127295	3300022407	Freshwater Lake	GYMERIMKARYKGICCKTGAIINVGDIIVYDSFTRKAWLTVDEDRMVVHVCCR
Ga0255143_10382723	3300024500	Freshwater	MGVSMERIMKAKFKTGAIINVGDIIVYDSVSRKAWLTVDDDRMVIHVCSR
Ga0208546_10969423	3300025585	Aqueous	MERIMKAKFKGICCKTGATINVGDIIVYDSVARKAWLTVDEDRMFVNFS
Ga0208147_10887341	3300025635	Aqueous	CCKTGAPINVGDIVVYDTVSRKAWLTVDEDRMFVNVVMCK
Ga0208147_11242982	3300025635	Aqueous	VVLFIKRIGMLKIIPAKFKGICYKTGAIINVGDIIVYDSVSRRAWLTVDEDRMFVNFS
Ga0208784_10835403	3300025732	Aqueous	MERIMKAKFKGICCKTGATINVGDIIVYDSVSRKAWLTVDIDRMVVHVCCR
Ga0208783_101870542	3300025872	Aqueous	MLKTMTAKFKGICCKTGAIINVGDIIVYDSVARKAWLTVDEDRMFVNFS
Ga0255156_10562683	3300026478	Freshwater	MGVSMERIMKAKFKGICCKTGAIINVGDIIVYDSVSRKAWLTVDDDRMVIHVCSR
Ga0208009_10347244	3300027114	Deep Subsurface	MERVMKAKYKGICCRTGAPINVGDIVVYDTVTRKVWLTVDDDRMVM
Ga0208788_11352833	3300027499	Deep Subsurface	MERVMKAKYKGICCRTGAPINVGDIVVYDTVTRKVWLTVDDDRMVMHVCSR
Ga0208974_10218667	3300027608	Freshwater Lentic	MERVMKARYKGICCKTGAIINVGDIIVYDSFTRKAWLTVDEDRMVVHVCCK
Ga0208133_11317142	3300027631	Estuarine	MRKTMQAKFKGVCCKTGAIINVGDIIVYDSVSRKAWLTVDEDRMFVNVVMCK
Ga0209356_11122963	3300027644	Freshwater Lake	MERIMKARYKGICCRTGAIINVGDIIVYDSFTRKAWLTVDEDRMVVHVCCR
Ga0208975_10239611	3300027659	Freshwater Lentic	MKARYKGICCKTGAIINVGDIIVYDSFTRKAWLTVDEDRMVVHVCCK
Ga0208975_10582431	3300027659	Freshwater Lentic	MKARYKGICCKTGAIINVGDIIVYDSFTRKAWLTVDEDRMVVHVCSR
Ga0208975_10885351	3300027659	Freshwater Lentic	MERVMKARYKGICCKTGAIINVGDIIVYDSFTRKAWLTVDEDRMV
Ga0209599_100616462	3300027710	Deep Subsurface	MERVMKAKFKGICCKTGATINVGDIIVYDSVSRKAWLTVDEDRMVVHVCCR
Ga0209599_100620232	3300027710	Deep Subsurface	MERIMKAKYKGICCKTGAIINVGDIIVYDSVSRKAWLTVDIDRMVVHVCCR
Ga0209442_10297119	3300027732	Freshwater Lake	GYMERIMKARYKGICCKTGAIINVGDIIVYDSSTRKAWLTVDEDRMVVHVCCR
Ga0209296_11032553	3300027759	Freshwater Lake	MERIMKAKYKGICCKTGAIINVGDIVVYDTVSRKVWLTVDEDRMFVNLVMCK
Ga0209598_1000014536	3300027760	Freshwater Lake	MERIMKARYKGICCKTGAIINVGDIIVYNSVTRKAWLTVDEDRMVVHVCCR
Ga0209768_104150603	3300027772	Freshwater Lake	RTGAIINVGDIIVYDSSTRKAWLTVDEDRMVVHVCCR
Ga0209246_102080884	3300027785	Freshwater Lake	MERIMKARYKGICCKTGAIINVGDIIVYDSFTRKAWLTV
Ga0209353_1000852412	3300027798	Freshwater Lake	MERIMKARYKGICCKTGAIINVGDIIVYDSFTRKAW
Ga0209229_101043562	3300027805	Freshwater And Sediment	MTKIMKAKYKGICCKTGAPINVGDIVVYDTVSRKVWLTVDEDRMFVIFS
Ga0209668_110620363	3300027899	Freshwater Lake Sediment	MFKTMKAKYKGVCCKTGATINVGDIIVYDSVSRKAWLTVDEDRMVVHVCCR
Ga0247723_11599091	3300028025	Deep Subsurface Sediment	YMERIMKARYKGICCKTGAIINVGDIIVYDSSTRKAWLTVDEDRMFVNVVMCK
Ga0315907_1000607728	3300031758	Freshwater	MERIVKARYKGICCKTGAIINVGDIIVYDSFTRKAWLTVDEDRMVVHVCSR
Ga0315907_1002989011	3300031758	Freshwater	MEQVMKAKYKGICCKTGAIINVGDIIVYNRATRKAWLTVDEDRMVVHVCCR
Ga0315899_1000330924	3300031784	Freshwater	MERIMKARYKGICCKTGAIINVGDIIVYNSATRKAWLTVDEDRMVVHVCCR
Ga0315909_102063236	3300031857	Freshwater	MERIMKARYKGICCKTGAIINVGDIIVYDSFTRKAWLTVDEDRMVV
Ga0315901_1012343011	3300031963	Freshwater	YKGICCKTGAIINVGDIIVYDSFTRKAWLTVDEDRMVVHVCCR
Ga0315901_106882283	3300031963	Freshwater	MERIVKARYKGICCKTGAIINVGDIIVYDSFTRKAWLTVDEDR
Ga0315905_100625307	3300032092	Freshwater	MERIMKARYKGICCKTGAIINVGDIIVYDSATRKAWLTVDEDRMVVHVCCR
Ga0315902_104480915	3300032093	Freshwater	MERVMKARYKGICCKTGAIINVGDIIVYDSFTRKAWLTVDEDRMVVHVCSR
Ga0315903_106428641	3300032116	Freshwater	MERVMKARYKGICCKTGAIINVGDIIVYDSFTRKAWL
Ga0334996_0443200_447_596	3300033994	Freshwater	RIMKAKFKGVCCKTGAIINVGDIIVYDSVSRKAWLTVDIDRMVVHVCYR
Ga0334986_0124463_790_945	3300034012	Freshwater	MERIMKAKFKGICCRTGAIINVGDIIVYDSVSRKAWLTVDIDRMVVHVCYR
Ga0335023_0067012_2_121	3300034050	Freshwater	CCKTGAIINVGDIIVYDSSTRKAWLTVDEDRMVVHVCCR
Ga0334995_0522401_576_707	3300034062	Freshwater	YKGICCRTGAIINVGDIIVYDSSTRKAWLTVDEDRMVVHVCCR
Ga0335001_0410821_417_572	3300034064	Freshwater	MERIMKARYKGICCKTGAIINVGDIVVYDTVSRKVWLTVDEDRMVVHVCCR
Ga0335012_0016500_3_125	3300034093	Freshwater	MERIMKARYKGICCKTGAIINVGDIIVYDSSTRKAWLTVDE
Ga0335031_0197072_220_375	3300034104	Freshwater	MEQVMKARYKGICCKTGAIINVGDIIVYDSVSRKAWLTVDIDRMVVHVCCR
Ga0335036_0002063_11771_11926	3300034106	Freshwater	MERIMKAKYKGICCKTGAIINVGDIIVYDSVSRKAWLTVDIDRMVVHVCYR
Ga0335036_0316822_1_129	3300034106	Freshwater	KGICCKTGAIINVGDIIVYDSFTRKAWLTVDEDRMVVHVCCR
Ga0335007_0065304_449_607	3300034283	Freshwater	MERIMKAKYKGICCKTGAIINVGDIIMYNSATRKAWLTVDEDRMFVNVVMCK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F088784

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences