Metagenome Family F089078

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F089078
Family Type	Metagenome
Number of Sequences	109
Average Sequence Length	91 residues
Representative Sequence	GHVNCDGSDITVTVPGVNGASGSVDASATMTLRTGDVNADGVVGTADLKEIRMNVGRGLVTEDNFRDDITVDGKVNHGDTTLEKSKL
Number of Associated Samples	73
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	85.32 %
% of genes from short scaffolds (< 2000 bps)	79.82 %
Associated GOLD sequencing projects	62
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (58.716 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere (15.596 % of family members)
Environment Ontology (ENVO)	Unclassified (55.963 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (83.486 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 36.78% Coil/Unstructured: 63.22%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF13884	Peptidase_S74	5.50
PF13418	Kelch_4	2.75
PF13517	FG-GAP_3	2.75
PF12704	MacB_PCD	2.75
PF01839	FG-GAP	1.83
PF00282	Pyridoxal_deC	1.83
PF00801	PKD	1.83
PF00248	Aldo_ket_red	0.92
PF04966	OprB	0.92
PF00027	cNMP_binding	0.92
PF00106	adh_short	0.92
PF14023	DUF4239	0.92
PF07228	SpoIIE	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG0076	Glutamate or tyrosine decarboxylase or a related PLP-dependent protein	Amino acid transport and metabolism [E]	1.83
COG3659	Carbohydrate-selective porin OprB	Cell wall/membrane/envelope biogenesis [M]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	58.72 %
Unclassified	root	N/A	41.28 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	58.72 %
Unclassified	root	N/A	41.28 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	58.72 %
Unclassified	root	N/A	41.28 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.28 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	11.01 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	3.67 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.28 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	11.01 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	3.67 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.28 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	3.67 %
Clostridia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	2.75 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	1.83 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.28 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3.67 %
Eubacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2.75 %
Chthoniobacterales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	1.83 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.28 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3.67 %
Oscillospiraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	2.75 %
unclassified Chthoniobacterales	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales	1.83 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.28 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3.67 %
Ruminiclostridium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminiclostridium	2.75 %
Chthoniobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales → Chthoniobacterales bacterium	1.83 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.28 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3.67 %
Ruminiclostridium cellobioparum	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminiclostridium → Ruminiclostridium cellobioparum	2.75 %
Chthoniobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales → Chthoniobacterales bacterium	1.83 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004156\|Ga0062589_102056200	Not Available	581	Open in IMG/M
3300004463\|Ga0063356_105668732	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminiclostridium → Ruminiclostridium cellobioparum	536	Open in IMG/M
3300004463\|Ga0063356_106214959	Not Available	512	Open in IMG/M
3300004480\|Ga0062592_101429815	All Organisms → cellular organisms → Bacteria	660	Open in IMG/M
3300004480\|Ga0062592_101534459	All Organisms → cellular organisms → Bacteria	641	Open in IMG/M
3300005093\|Ga0062594_101587378	All Organisms → cellular organisms → Bacteria	677	Open in IMG/M
3300005290\|Ga0065712_10292581	All Organisms → cellular organisms → Bacteria	874	Open in IMG/M
3300005294\|Ga0065705_10904539	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	575	Open in IMG/M
3300005328\|Ga0070676_10015748	All Organisms → cellular organisms → Bacteria	4172	Open in IMG/M
3300005328\|Ga0070676_10192716	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales → Chthoniobacterales bacterium	1332	Open in IMG/M
3300005330\|Ga0070690_100257257	All Organisms → cellular organisms → Bacteria	1237	Open in IMG/M
3300005333\|Ga0070677_10636898	All Organisms → cellular organisms → Bacteria	594	Open in IMG/M
3300005347\|Ga0070668_100044821	All Organisms → cellular organisms → Bacteria	3394	Open in IMG/M
3300005347\|Ga0070668_100855443	Not Available	811	Open in IMG/M
3300005354\|Ga0070675_100176345	All Organisms → cellular organisms → Bacteria	1846	Open in IMG/M
3300005354\|Ga0070675_100409655	All Organisms → cellular organisms → Bacteria	1211	Open in IMG/M
3300005354\|Ga0070675_100697155	All Organisms → cellular organisms → Bacteria	925	Open in IMG/M
3300005356\|Ga0070674_102039118	Not Available	523	Open in IMG/M
3300005364\|Ga0070673_101809108	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminiclostridium → Ruminiclostridium cellobioparum	579	Open in IMG/M
3300005364\|Ga0070673_101815659	Not Available	578	Open in IMG/M
3300005456\|Ga0070678_100360835	All Organisms → cellular organisms → Bacteria	1252	Open in IMG/M
3300005457\|Ga0070662_100221504	All Organisms → cellular organisms → Bacteria	1510	Open in IMG/M
3300005471\|Ga0070698_100861873	Not Available	851	Open in IMG/M
3300005543\|Ga0070672_100286045	All Organisms → cellular organisms → Bacteria	1395	Open in IMG/M
3300005545\|Ga0070695_100409663	All Organisms → cellular organisms → Bacteria	1030	Open in IMG/M
3300005545\|Ga0070695_100822162	All Organisms → cellular organisms → Bacteria	746	Open in IMG/M
3300005547\|Ga0070693_101439475	Not Available	537	Open in IMG/M
3300005548\|Ga0070665_100578314	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1136	Open in IMG/M
3300005548\|Ga0070665_100607686	All Organisms → cellular organisms → Bacteria	1106	Open in IMG/M
3300005563\|Ga0068855_101043873	All Organisms → cellular organisms → Bacteria	857	Open in IMG/M
3300005564\|Ga0070664_101199485	All Organisms → cellular organisms → Bacteria	716	Open in IMG/M
3300005618\|Ga0068864_102000036	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminiclostridium → Ruminiclostridium cellobioparum	586	Open in IMG/M
3300005718\|Ga0068866_10704485	All Organisms → cellular organisms → Bacteria	693	Open in IMG/M
3300005841\|Ga0068863_101165461	Not Available	776	Open in IMG/M
3300005841\|Ga0068863_101241154	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	752	Open in IMG/M
3300005841\|Ga0068863_101522356	All Organisms → cellular organisms → Bacteria	678	Open in IMG/M
3300006237\|Ga0097621_100750070	All Organisms → cellular organisms → Bacteria	902	Open in IMG/M
3300006881\|Ga0068865_101246077	Not Available	660	Open in IMG/M
3300009094\|Ga0111539_11044968	Not Available	949	Open in IMG/M
3300009094\|Ga0111539_11883202	Not Available	693	Open in IMG/M
3300009101\|Ga0105247_11665449	Not Available	526	Open in IMG/M
3300009156\|Ga0111538_13094672	Not Available	580	Open in IMG/M
3300009156\|Ga0111538_13465430	Not Available	548	Open in IMG/M
3300010373\|Ga0134128_11966713	All Organisms → cellular organisms → Bacteria	644	Open in IMG/M
3300010401\|Ga0134121_12532530	Not Available	556	Open in IMG/M
3300012502\|Ga0157347_1076169	Not Available	503	Open in IMG/M
3300012900\|Ga0157292_10213302	Not Available	652	Open in IMG/M
3300012905\|Ga0157296_10129072	Not Available	730	Open in IMG/M
3300012924\|Ga0137413_11606675	All Organisms → cellular organisms → Bacteria	531	Open in IMG/M
3300012957\|Ga0164303_10992925	Not Available	597	Open in IMG/M
3300012957\|Ga0164303_11080411	Not Available	578	Open in IMG/M
3300012960\|Ga0164301_10438218	All Organisms → cellular organisms → Bacteria	925	Open in IMG/M
3300012961\|Ga0164302_10053204	All Organisms → cellular organisms → Bacteria	2023	Open in IMG/M
3300012984\|Ga0164309_11172000	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	643	Open in IMG/M
3300013296\|Ga0157374_11441384	Not Available	712	Open in IMG/M
3300013297\|Ga0157378_10383850	All Organisms → cellular organisms → Bacteria	1380	Open in IMG/M
3300013306\|Ga0163162_10123602	All Organisms → cellular organisms → Bacteria	2693	Open in IMG/M
3300013306\|Ga0163162_11558447	All Organisms → cellular organisms → Bacteria	753	Open in IMG/M
3300013307\|Ga0157372_13292264	Not Available	515	Open in IMG/M
3300013308\|Ga0157375_10170950	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2321	Open in IMG/M
3300013308\|Ga0157375_11293357	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	857	Open in IMG/M
3300013308\|Ga0157375_13253955	All Organisms → cellular organisms → Bacteria	542	Open in IMG/M
3300014969\|Ga0157376_12425252	Not Available	564	Open in IMG/M
3300015201\|Ga0173478_10854956	Not Available	505	Open in IMG/M
3300015371\|Ga0132258_10234353	All Organisms → cellular organisms → Bacteria	4475	Open in IMG/M
3300015371\|Ga0132258_10283768	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales → Chthoniobacterales bacterium	4064	Open in IMG/M
3300015371\|Ga0132258_11154142	Not Available	1958	Open in IMG/M
3300015372\|Ga0132256_102654267	Not Available	601	Open in IMG/M
3300015373\|Ga0132257_101026058	Not Available	1039	Open in IMG/M
3300015374\|Ga0132255_103019984	All Organisms → cellular organisms → Bacteria	718	Open in IMG/M
3300017792\|Ga0163161_10032679	All Organisms → cellular organisms → Bacteria	3717	Open in IMG/M
3300017792\|Ga0163161_11967893	Not Available	520	Open in IMG/M
3300019362\|Ga0173479_10353067	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	692	Open in IMG/M
3300025315\|Ga0207697_10020369	All Organisms → cellular organisms → Bacteria	2716	Open in IMG/M
3300025315\|Ga0207697_10340783	All Organisms → cellular organisms → Bacteria	666	Open in IMG/M
3300025315\|Ga0207697_10471558	Not Available	556	Open in IMG/M
3300025901\|Ga0207688_10077968	All Organisms → cellular organisms → Bacteria	1888	Open in IMG/M
3300025901\|Ga0207688_10855498	Not Available	576	Open in IMG/M
3300025907\|Ga0207645_10119591	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1709	Open in IMG/M
3300025919\|Ga0207657_11313986	Not Available	546	Open in IMG/M
3300025923\|Ga0207681_10184122	All Organisms → cellular organisms → Bacteria	1593	Open in IMG/M
3300025923\|Ga0207681_10553289	All Organisms → cellular organisms → Bacteria	947	Open in IMG/M
3300025926\|Ga0207659_10050069	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2966	Open in IMG/M
3300025926\|Ga0207659_10099763	All Organisms → cellular organisms → Bacteria	2187	Open in IMG/M
3300025930\|Ga0207701_10122225	All Organisms → cellular organisms → Bacteria	2319	Open in IMG/M
3300025930\|Ga0207701_10938470	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	723	Open in IMG/M
3300025933\|Ga0207706_10055581	All Organisms → cellular organisms → Bacteria	3490	Open in IMG/M
3300025937\|Ga0207669_11442349	Not Available	586	Open in IMG/M
3300025945\|Ga0207679_11696610	Not Available	578	Open in IMG/M
3300025960\|Ga0207651_11275817	Not Available	660	Open in IMG/M
3300025960\|Ga0207651_11867267	Not Available	540	Open in IMG/M
3300025972\|Ga0207668_10202307	All Organisms → cellular organisms → Bacteria	1582	Open in IMG/M
3300025972\|Ga0207668_10584404	All Organisms → cellular organisms → Bacteria	971	Open in IMG/M
3300026023\|Ga0207677_10871963	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	810	Open in IMG/M
3300026121\|Ga0207683_10928490	All Organisms → cellular organisms → Bacteria	808	Open in IMG/M
3300027614\|Ga0209970_1059807	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	698	Open in IMG/M
3300027876\|Ga0209974_10117806	All Organisms → cellular organisms → Bacteria	939	Open in IMG/M
3300028379\|Ga0268266_10327539	All Organisms → cellular organisms → Bacteria	1435	Open in IMG/M
3300028379\|Ga0268266_10812701	All Organisms → cellular organisms → Bacteria	903	Open in IMG/M
3300031847\|Ga0310907_10257354	Not Available	861	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	74.31%
Environmental	Environmental	25.69%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	74.31%
Terrestrial	Environmental → Terrestrial	25.69%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere	45.87%
Rhizoplane	Host-Associated → Plants → Rhizoplane	26.61%
Soil	Environmental → Terrestrial → Soil	25.69%
Roots	Host-Associated → Plants → Roots	1.83%

Habitat	Taxonomy	Distribution
Soil	Host-Associated → Plants → Rhizosphere → Soil	34.86%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	20.18%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	19.27%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	11.01%
Loam	Environmental → Terrestrial → Soil → Loam	5.50%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	5.50%
Soil	Host-Associated → Plants → Rhizoplane → Soil	1.83%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.83%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	34.86%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	19.27%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	12.84%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	11.01%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.50%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	5.50%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.59%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	1.83%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.92%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	0.92%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.92%

Habitat	Taxonomy	Distribution
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	15.60%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	12.84%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	9.17%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	5.50%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	5.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	4.59%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	4.59%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	4.59%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.67%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.67%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	3.67%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.67%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.67%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.75%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.83%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	1.83%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	1.83%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.92%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.92%
Arabidopsis Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Arabidopsis Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.92%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300012502	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.2.yng.040610	Host-Associated	Open in IMG/M
3300012900	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S179-409R-1	Environmental	Open in IMG/M
3300012905	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S013-104B-2	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015201	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027614	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co S AM (SPAdes)	Host-Associated	Open in IMG/M
3300027876	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes)	Host-Associated	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0062589_1020562001	3300004156	Soil	HVTCDGSDITVTVPGVNGASGSVDASATMTLRTGDVNADGVVGTADLKEIRMEVGRGLVNDDNFRDDITVDGKVNHGDTTLEKSKL*
Ga0063356_1056687321	3300004463	Arabidopsis Thaliana Rhizosphere	GVNGASGSVDASATMTLRTGDVNADGVVGTADLKEIRMEVGRGLVTEDNFRDDITVDGKVNHGDTTLEKSKL*
Ga0063356_1062149591	3300004463	Arabidopsis Thaliana Rhizosphere	TVELGHVNCDGSDIAVTVPGVNGASGSVDASAIMTLRTGDVNADGVVGTADLKEIRMEVGRGLVNGDNFRDDITVDGKVNHGDTTLEKSKL*
Ga0062592_1014298151	3300004480	Soil	GHVTCDGSDITVTVPGVNGASGSVDASATITLRTGDVNADGVVGTADLKEIRMNVGRGLVNDDNFRDDITVDGKVNHGDTTLEKSKL*
Ga0062592_1015344591	3300004480	Soil	HVTCDGSDITVTVPGVNGASGSVDASATMTLRTGDVNADGVVGTADLKEIRMEVGRGLVTEDNFRDDITVDGKVNHGDTTLEKSKL*
Ga0062594_1015873781	3300005093	Soil	VPGVNGASGSVDASATMTLRTGDVNADGIVGTADLKDIKMHLGRGLVDGDNFRDDITVDGKVNHGDTTLEKSKL*
Ga0062594_1032816541	3300005093	Soil	FSEEVTSISGITITTCGSVNSTTISGSTVTVELGHVNCDGSDITVAVPGVNGASGSVDASATMTLRTGDVNADGIVNNTDLKEIRMNVGRGLVNGDNFRDDITVDGKVNHGDTTLEKSKL
Ga0065712_102925811	3300005290	Miscanthus Rhizosphere	VNSTTISGSTVTVELGHIICDGSDITVTVPGVNGASGSVDASATMTLRTGDVNADGVVGTRDLKEIKMHLGRGLVGGDDFRDDITVDGKVNHGDTTLEKSKL*
Ga0065705_109045392	3300005294	Switchgrass Rhizosphere	GSDIIVTVPGVNGASGSVDASATMTLRTGDVNADGVVGTADLKEIRMNVGRGLVTDDNFRDDITVDGKVNHGDTTLEKTKL*
Ga0070676_100157484	3300005328	Miscanthus Rhizosphere	VELGHVNCDGSDLTVTVPGVNGASGSVDASATMTLPTGDVNADGVVNNMDLKEIKMNVGRDLVNDNFRDDITVDGKVNHGDTTVEKLKL*
Ga0070676_101927162	3300005328	Miscanthus Rhizosphere	ELGHVTCDGSDITVTVPSVNGASGSVDASATMTLRTGDVNADGVVGTADLKEIRMNVGRGLVNGDNFRDDITVDGKVNHGDTTLEKSKL*
Ga0070690_1002572571	3300005330	Switchgrass Rhizosphere	TFSGNTVTVQLGNVNCDGSDITVSVAGVNGASGSVDASATMTLQVADVNGDGVVDTADINEIRMNIGRGLVNDGNFRTDITVDGKCNHGDKTLAKTKL*
Ga0070690_1017167161	3300005330	Switchgrass Rhizosphere	RSTRTLSCIWAVSSSVDASPTMTLRTGDVNADGVVNDTDLKEIKINAGRGLVNDDNFRDDITVDGKVKHSDTTLERSKL*
Ga0070677_106368982	3300005333	Miscanthus Rhizosphere	TVTVPGVNGASGSVDASATMTLPTGDVNADGVVNNMDLKEIKMNVGRDLVNDNFRDDITVDGKVNHGDTTVEKLKL*
Ga0070668_1000448211	3300005347	Switchgrass Rhizosphere	VPGVNGASGSVDASATMTLRTGDVNADGVVNRTDPKEIKMSVGRGLVNDDNFRDDITVDGKINHGDTTLEKSKL*
Ga0070668_1008554432	3300005347	Switchgrass Rhizosphere	RVELGHVTCDGSDIIVTVPGVNGASGSVDASATMTLRTGDVNADGVVGTADLKEIRREVGRGLVTDDNFRDDITVDGKVNHGDTTLEKTKL*
Ga0070675_1001763452	3300005354	Miscanthus Rhizosphere	DITVTVPGVNGASGSVDASATMTLRTGDVNADGVANNTDLKEIKMNVGRGLVNDDNFRDDITVDGKVNHGDTTLEKSKL*
Ga0070675_1004096552	3300005354	Miscanthus Rhizosphere	RVNSTTISGSTVTVELGHVTCDGSDITVTVPGVNGVSGSVDASATMTLRTGDVNADGVVNNTDLKEIRMNVGRGLVTKDNFRDDITIDGKVNHGDTTLEKSKL*
Ga0070675_1006971552	3300005354	Miscanthus Rhizosphere	VTCDGSDITVTVPGVNGASGSVDASATMTLRTGDVNADGRVGTADLKEIKMNVGRGLVTEDNFRDDITVDGKVNHGDTTLEKSKL*
Ga0070674_1020391182	3300005356	Miscanthus Rhizosphere	GSDITVTVPGVNGASGSVDASATMTLRTGDVNADGIVGTADLKEIRMNVGRGLVNDDNFRDDITVDGKVNHGDTTLEKSKL*
Ga0070673_1018091081	3300005364	Switchgrass Rhizosphere	TCGSVNSTTISGSTVTVELGHVNCDGSDIIVAVPGVNGASGSVDASATMTLRTGDVNADGVVNRTDPKEIKMSVGRGLVNDDNFRDDITVDGKINHGDTTLEKSKL*
Ga0070673_1018156591	3300005364	Switchgrass Rhizosphere	GHVTCDGSDITVTVPGVNGASGSVDASATMTLQTGDVNADGFVGTADLKEIRMEVGRGLVTEDNFRDDITVDGKVNHGDTTLEKSKL*
Ga0070678_1003608351	3300005456	Miscanthus Rhizosphere	RVNSTTISGSTVTVELGHVNCDGSDITVTVPGVNGASGSVDASATMTLRTGDVNADGVVNRTDPKEIKMSVGRGLVNDDNFRDDITVDGKINHGDTTLEKSKL*
Ga0070662_1002215041	3300005457	Corn Rhizosphere	FSGNTVTVQLGNVNCDGSDITVSVAGVNGASGSVDASATMTLQVADVNGDGVVDTADINEIRMNIGRGLVNDGNFRTDITVDGKCNHGDKTLAKTKL*
Ga0070698_1008618731	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	SGSTVPVELGHVSCDGSDITVTVPGVNGASGSVDASVTMTLRTGDVNADGRVGTADLKEIRLNVGRGLVNDDNFRDDITVDGKVNHGDTTLEKSKL*
Ga0070672_1002860452	3300005543	Miscanthus Rhizosphere	ASTTTCGKVMSATFSGNTVTVQLGNVNCDGSDITVSVAGVNGASGSVDASATMTLQVADVNGDGVVDTADINEIRMNIGRGLVNDGNFRTDITVDGKCNHGDKTLAKTKL*
Ga0070695_1004096631	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	ELGHVTCDGSDITVTVPSVNGASGSVDASATMTLRTGDVNADGVVGTADLKEIRMEVGRGLVTEDNFRDDITVDGKVNHGDTTLEKSKL*
Ga0070695_1008221622	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	GHVNCDGSDITVTVPGVNGASGSVDASATMTLRTGDVNADGVVGTADLKEIRMNVGRGLVTEDNFRDDITVDGKVNHGDTTLEKSKL*
Ga0070693_1014394751	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	ELGHVTCDGSDLTVTVSGVNGASGSVDASATMTLRTGDVNADGVVNNTDLKEIKLEVGRGLVNGDNFRDDITVDGKVNHGDTTLEKSKL*
Ga0070665_1005783142	3300005548	Switchgrass Rhizosphere	ISGSTVTVELGHVNCDGSDITVTIPGVTGASGSVDASATMTLRTADVNADGVVNNTDLNEIKMNVGRGLVNEDNFRDDITVDGKVNHGDTTLEKSKL*
Ga0070665_1006076862	3300005548	Switchgrass Rhizosphere	VNSTTISGSTVTVELGHVNCDGSDITVTVPGVNGASGSVDASTTMTLRTGDVNADGVVNHKDLKEIRMEVGRGLVTEDNFRDDITVDGKVNHGDTSLEKSKL*
Ga0068855_1010438733	3300005563	Corn Rhizosphere	TISDSTVTVELGHVTCDGSDITVTVPGVSGASGSVDASATMTLLTGDVNADGVVNNTDLKEIRMNVGRGLVNDDNFRDDITVDGKVNHGDTTLEKSKL*
Ga0070664_1011994851	3300005564	Corn Rhizosphere	TISGSTVTVELGHVNCDGSDITVTVPGVNGASGAVDASASMTLRTGDVNADGVVGTADLKEIRMEVGRGLVTEDNFRDDITVDGKVNHGDTTLEKSKL*
Ga0068864_1020000361	3300005618	Switchgrass Rhizosphere	SCDDSDITMTVPGVTGASGSVDASATITLRTGDVNADGVVNDTDLKEIKMNVGRGLVNDDNFRDDITVDGKVNHGDTTLEKSKL*
Ga0068866_107044852	3300005718	Miscanthus Rhizosphere	GVTGASGSVDASATMTLQTGDVNADGVVDTADLNEIKMNVGRGLVTEDNYRDDITVDGKVNHGDTTLEKSKL*
Ga0068863_1011654612	3300005841	Switchgrass Rhizosphere	VQLGNVNCDGSDITVSVAGVNGASGSVDASATMTLQVADVNGDGVVDTADINEIRMNIGRGLVNDGNFRTDITVDGKCNHGDKTLAKTKL*
Ga0068863_1012411542	3300005841	Switchgrass Rhizosphere	GHVTCDGSDITVTVPGVNGASGSVDASATMTLRTGDVNADGRVGTADLKEIRMNVGRGLVNGDNFRDDITVDGKVNHGDTTLEKSKL*
Ga0068863_1015223562	3300005841	Switchgrass Rhizosphere	GHVTCDGSDITVTVPGVNGASGSVDASATMTLRTGDVNADGRVGTADLKEIRMNVGRGLVNDDNFRDDITVDGKVNHGDTTLEKSTL*
Ga0097621_1007500702	3300006237	Miscanthus Rhizosphere	GSDITVTVPGVNGASGSVDASATMTLRTGDVNADGVVNRTDPKEIKMSVGRGLVNDDNFRDDITVDGKINHGDTTLEKSKL*
Ga0068865_1012460772	3300006881	Miscanthus Rhizosphere	CDGSDITVTVPGVNGASGSVDASATMTLLTGDVNADGVVNNTDLKEIRMNVGRGLVNDDNFRDDITVDGKVNHGDTTLEKSKL*
Ga0111539_110449681	3300009094	Populus Rhizosphere	TTCGRVNSTTISDSTVTVELGHVTCDGSDITVTVPGVNGASGSVDASATMTLRTGDVNADGVVGTADLKEIRMEVGRGLVTDDNFRDDITVDGKVNHGDTTLEKAKL*
Ga0111539_118832022	3300009094	Populus Rhizosphere	TTCGRVNSTTISDSTVTVELGHVTCDGSDITVTVPGVNGASGSVDASATMTLRTGDVNADGVVGTADLKEIRMNVGRGLVNDDNFRDDITVDGKVNHGDTTLEKSKL*
Ga0105247_116654491	3300009101	Switchgrass Rhizosphere	NSTTISGSTVTVELGHVTCDGSDITVTVPGVNGASGSVDASATMTLRTGDVNADGVVNRTDPKEIKMSVGRGLVNDDNFRDDITVDGKINHGDTTLEKSKL*
Ga0111538_130946721	3300009156	Populus Rhizosphere	VTVELGHVNCDGSDITVTVPGVNGASGSVDATVTMTLRTGDVNADGRVGTADLKEIRMNVSRGLVTEDNFRDDITVDGKVNHGDTTLEKSKL*
Ga0111538_134654301	3300009156	Populus Rhizosphere	ISGSTVTVELGHVTCDGSDITVTVPGVTGASGSVDASATMTLRTGDVNADGVVGTADLKEIKLNVGRGLVNDDNFRDDITVDGKVNHGDTTLEKSKL*
Ga0134128_119667132	3300010373	Terrestrial Soil	VTGASGSVDASATMTLRTGDVNADGRVGTADLKEIRMEVGRGLVTEDNFRDDITVDGKVNHGDTTLEKSKL*
Ga0134121_125325302	3300010401	Terrestrial Soil	VELGHVNCDGSDITVTVSGVNGASGSVDASATMTLRTGDVNADGVVNNTDLKEIRMNVGRGLVNGDNFRDDITVDGKVNHGDTTLERSKL*
Ga0157347_10761692	3300012502	Arabidopsis Rhizosphere	ISGSTVTVELGHVTCDGSDITVTVAGVNGASGSVDASATMTLRTGDVNADGRVGTADLKEIRMNVGRGLVNDDNFRDDITVDGKVNHGDTTLEKSKL*
Ga0157292_102133022	3300012900	Soil	TVTVPGVNGASGAVDASATMTLRTGDVNADGVVGTADLKEIRMEVGRGLVTEDNFRDDITVDGKVNHGDATLEKSKL*
Ga0157296_101290722	3300012905	Soil	VELGHVTCDGSDIIVTVPGVNGASGSVDASATMTLRTGDVNADGVVGTADLKEIRMNVGRGLVTDDNFRDDITVDGKVNHGDTTLEKTKL*
Ga0137413_116066752	3300012924	Vadose Zone Soil	VNGASGSVDASATMTLRTGDVNADGLVGTADLKQIRMNVGRGLVNDDNFRDDITVDGKVNHGDTTLEKSKL*
Ga0164303_109929251	3300012957	Soil	TISDSTVTVELGHVTCDGSDITVTVPGVNGASGSVDASATMTLRTGDVNADGVVNNPDLKEIRMEVGRGLVNGDNFRGNITVDGKVNHGDTTLEKSKL*
Ga0164303_110804111	3300012957	Soil	LGNVNCDGSDITVTVAGVNGASGSVDASATMTLRVADVNADGVVDTADINEIRMHIGRGLVDESDFRDDITVDGKINHGDKTLAKTKL*
Ga0164301_104382182	3300012960	Soil	GSVNSTTINGSTVTVELGHVNCDGSDITVTVPGVNGASGSVDASDTMTLRTGDVNADDVVNNKDLKEIRMNVGRGLVNDDNFRDDITVDGKVNHGDTTLEKSKL*
Ga0164302_100532041	3300012961	Soil	VIVPGVNGASGSVDASATMTLRTGDVNADGVVNRTDLKEIKLNVGRGLVNGDNFRDDITVDGKVNQGDTTLEKSKL*
Ga0164309_111720001	3300012984	Soil	TVTVELGHIICDGSDITVTVPGVNGASGSVDASATMTLRTGDVNADGVLDTADLNEIKMNLGRGLVNEDNFRDDITVDGKVNHGDTTLEKSKL*
Ga0164305_122591581	3300012989	Soil	TTCGSVNSTTISGSTVTVELGHINCDGSDITVTVPGVNGASGSVDASATMTLRTGDVNADGVVNNTDLKEIRMNVGRGLVTEDNFRDDITVDGKVNHGDTTLEKSKLYTEVHKRIPTIKP
Ga0157374_114413841	3300013296	Miscanthus Rhizosphere	ITCDGSDITVTVPGVNGASGSVDASATMTLRTGDVNADGIVGTADLKEIRMNVGRGLVNDDNFRDDITVDGKVNHGDTTLEKSKL*
Ga0157378_103838501	3300013297	Miscanthus Rhizosphere	VNSTTISGSTVTVKLGHVTCDGSDIIVIVPGVTGASGSVDASATMTLRTGDVNADGVVNNTDLQEIRMNVGRGLVNGDNFRDDITVDGKVNHGDTTLERSKL*
Ga0163162_101236021	3300013306	Switchgrass Rhizosphere	LGHVNCDGSDLTVTVPGVNGASGSVDASATMTLPTGDVNADGVVNNMDLKEIKMNVGRDLVNDNFRDDITVDGKVNHGDTTVEKLKL*
Ga0163162_115584472	3300013306	Switchgrass Rhizosphere	GVNGASGSVDASATMTLRTGDVNADGIVGTADLKDIKMHLGRGLVDGDNFRDDITVDGKVNHGDTTLEKSKL*
Ga0157372_132922641	3300013307	Corn Rhizosphere	ISGSTVSVELGHVNCDGSDITVTVPGVNGASGSVDASATMTLRTGDVNADGVVNNTDLKEIRMNVGRGLVNDDNFRDDITVDGKVNHGDTTLEKSKL*
Ga0157375_101709502	3300013308	Miscanthus Rhizosphere	CGKVMSATFSGNTVTVQLGNVNCDGSDITVSVAGVNGASGSVDASATMTLQVADVNGDGVVDTADINEIRMNIGRGLVNDGNFRTDITVDGKCNHGDKTLAKTKL*
Ga0157375_112933571	3300013308	Miscanthus Rhizosphere	TVPGVNGASGSVDASATMTLRTGDVNADGVVNNTDLKEIRMNVGRGLVNGDNFRDDITVDGKVNHGDTTLEKSKL*
Ga0157375_132539551	3300013308	Miscanthus Rhizosphere	VPGVNGASGSVDASATMTLRTGDVNADGVVGTADLKEIRMEVGRGLVTEDNFRDDITVDGKVNHGDTTLEKSKL*
Ga0157376_124252521	3300014969	Miscanthus Rhizosphere	SVNGTTISDSTVTVELGQVGCDGSDIAVTVPGVNGASGSVDASATMTLRTGDVNADGIVNNTDLKEIRMNVGRGLVNGDNFRDDITVDGKVNHGDTTLEKSKL*
Ga0173478_108549561	3300015201	Soil	STVTVELGHVTCDGADITVTVPGVNGASGSVDASATMTLRTGDINADGVVNNTDLKEIRMNVGRGLVTDDNFRDDITVDGKVNHGDTTLEKSKL*
Ga0132258_102343531	3300015371	Arabidopsis Rhizosphere	STTISGSTVTVELGHVNCDGSDITVTVPGVNGASGSVDASTTMTLRTGDVNADGVVNHKDLKEIRMEVGRGLVTEDNFRDDITVDGKVNHGDTSLEKSKL*
Ga0132258_102837681	3300015371	Arabidopsis Rhizosphere	DGSDISVTVPGVTGASGSVEASATMTLRTGDVNADGRVGTADLMEIRMNAGRGLVTDDNFRDDITVDGKVNHGDTTLEKSKL*
Ga0132258_111541421	3300015371	Arabidopsis Rhizosphere	MCVNGVSGSVDASATMTLRTGDVNADGVVNNTDLKEIRMNVGRGLVNDDSFRDDITVDGKVNHGDTTLEKSKL*
Ga0132256_1026542671	3300015372	Arabidopsis Rhizosphere	STVTVELGHVTCDGSDITVTVPGVNGASGSVDASATMTLRTGDVNADGRVGTGDLKEIRMEVGRGLVSEDNFRDDITVDGKVNHGDTTLEKSKL*
Ga0132257_1010260581	3300015373	Arabidopsis Rhizosphere	TVELGHVTCDGSDISVTVPGVTGASGSVDASATMTLRTGDVNADGRVGTADLMEIRMNAGRGLVTDDNFRDDITVDGKVNHGDTTLEKSKL*
Ga0132255_1030199842	3300015374	Arabidopsis Rhizosphere	VELGHVTCDGSDITVTVPGVNGASGSVDASATMTLRTGDVNADGVVGTADLKEIRMNVGRGSVNEDNFRDDITVDGKVNHGDTTLEKSKL*
Ga0163161_100326795	3300017792	Switchgrass Rhizosphere	GHVSCDGSDITVTVPGVNGASGSVDASATMTLRTGDVNADGRVGTADLKEIKMNVGRGLVNEDNFRDDITVDGKVNHGDTTLEKSKL
Ga0163161_119678931	3300017792	Switchgrass Rhizosphere	SGSTVTVELGHVNCDGSDIIVAVPGVNGASGSVDASATMTLRTGDVNADGVVNRTDPKEIKMSVGRGLVNDDNFRDDITVDGKINHGDTTLEKSKL
Ga0173479_103530671	3300019362	Soil	CDGSDITVTVSGVNGASGSVDASAIMTLRTGDVNADGGVNRTDLDEIRMEVGRGLVTEDNFRDDITVDGQVNHGDTTLEKSKL
Ga0207697_100203691	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	LGHVNCDGSDLTVTVPGVNGASGSVDASATMTLPTGDVNADGVVNNMDLKEIKMNVGRDLVNDNFRDDITVDGKVNHGDTTVEKLKL
Ga0207697_103407831	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	TVELGHVNCDGSDITVTIPGVTGASGSVDASATMTLRTADVNADGVVNNTDLNEIKMNVGRGLVNEDNFRDDITVDGKVNHGDTTLEKSKL
Ga0207697_104715581	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	GSVNSTTISVSTVTVEHGHVTCDGSDITVTVPGVNGVSGSVDASATMTLRTGDVNADGVVNNTDLKEIRMNVGRGLVTKDNFRDDITIDGKVNHGDTTLEKSKL
Ga0207688_100779685	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	PGVNGASGSVDASATMTLRTGDVNADGIVGTADLKDIKMHLGRGLVDGDNFRDDITVDGKVNHGDTTLEKSKL
Ga0207688_108554981	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	VTVELEHVTCDGSDITVAVPGVNGASGAVDASATMTLRTGDVNADGVVGTADLKEIRMEMGRGLVTEDNFRDDITVDGKVNHGDTTLEKSKL
Ga0207645_101155191	3300025907	Miscanthus Rhizosphere	GITTTSCGRVNSTMISGSTVTVELGHVTCDGSDITVTVPGVNGASGSVDASATMTLRTGDVNADGIVGTADLKDIKMHLGRGLVDGDNFRDDITVDGKVNHGDTTLEKSKL
Ga0207645_101195912	3300025907	Miscanthus Rhizosphere	VELGHVNCDGSDLTVTVPGVNGASGSVDASATMTLPTGDVNADGVVNNMDLKEIKMNVGRDLVNDNFRDDITVDGKVNHGDTTVEKLKL
Ga0207657_113139861	3300025919	Corn Rhizosphere	CDDSDITVIVPGVNGASGSVDASATMTLRTGDVNADGVVNNTDLKEIRMNVGRGLVNDDNFRDDITVDGKVNHGDTTLEKSKL
Ga0207681_101841221	3300025923	Switchgrass Rhizosphere	DGSDIIVTVPGVNGASGSVDASATMTLRTGDVNADGVVNRTDLKEIKMSVDRGLVNDDNFRDDITVDGKINHGDTTLEKSKL
Ga0207681_105532891	3300025923	Switchgrass Rhizosphere	VNSTTISRSTVTVELGHVTCDGADITVTVPGVNGASGSVDASATMTLRTGDVNADGVVNNTDLKEIRMNVGRGLVTDDNFRDDITVDGKVNHGDTTLEKSKL
Ga0207659_100500694	3300025926	Miscanthus Rhizosphere	VPGVNGASGSVDASATMTLRTGDVNADGVVNRTDPKEIKMSVGRGLVNDDNFRDDITVDGKINHGDTTLEKSKL
Ga0207659_100997631	3300025926	Miscanthus Rhizosphere	GHVNCDGADITVTVPGVNGASGSVDASATMTLRTGDVNADGVANNTDLKEIKMNVGRGLVNDDNFRDDITVDGKVNHGDTTLEKSKL
Ga0207701_101222253	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	LGHVTCDGADITVTVPGVNGASGSVDASATMTLRTGDVNADGVVNNTDLKEIRMNVGRGLVTDDNFRDDITVDGKVNHGDTTLEKSKL
Ga0207701_109384702	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	VTIPGVTGASGSVDASATMTLRTADVNADGVVNNTDLNEIKMNVGRGLVNEDNFRDDITVDGKVNHGDTTLEKSKL
Ga0207706_100555813	3300025933	Corn Rhizosphere	VHTGHGHVNCDGSDITVTVPGVNGASGSVDASATMTLLTGDVNADGVVNNTDLKEIRMNVGRGLVNDDNFRDDITVDGKVNHGDTTLEKSKL
Ga0207706_110712901	3300025933	Corn Rhizosphere	VTSISGASTTTCGKVMSATFSGNTVTVQLGNVNCDGSDITVSVAGVNGASGSVDASATMTLQVADVNGDGVVDTADINEIRMNIGRGLVNDGNFRTDITVDGKCNHGDKTLAKTKL
Ga0207669_103936351	3300025937	Miscanthus Rhizosphere	GVSGITTTSCGRVNSTMISGSTVTVELGHVTCDGSDITVTVPGVNGASGSVDASATMTLRTGDVNADGIVGTADLKDIKMHLGRGLVDGDNFRDDITVDGKVNHGDTTLEKSKL
Ga0207669_114423491	3300025937	Miscanthus Rhizosphere	TVELGHVNCDGSDITVTVPGVNGASGSVDASATMTLRTGDVNADGIVNNTDLKEIRMNVGRGLVNGDNFRDDITVDGKVNHGDTTLEKSKL
Ga0207691_102750711	3300025940	Miscanthus Rhizosphere	VAAANILERSTRTLSCIWAVSSSVDASPTMTLRTGDVNADGVVNDTDLKEIKINAGRGLVNDDNFRDDITVDGKVKHSDTTLERSKL
Ga0207691_102923032	3300025940	Miscanthus Rhizosphere	SGASTTTCGKVMSATFSGNTVTVQLGNVNCDGSDITVSVAGVNGASGSVDASATMTLQVADVNGDGVVDTADINEIRMNIGRGLVNDGNFRTDITVDGKCNHGDKTLAKTKL
Ga0207691_103455363	3300025940	Miscanthus Rhizosphere	SGITTTSCGRVNSTMISGSTVTVELGHVTCDGSDITVTVPGVNGASGSVDASATMTLRTGDVNADGIVGTADLKDIKMHLGRGLVDGDNFRDDITVDGKVNHGDTTLEKSKL
Ga0207679_116966101	3300025945	Corn Rhizosphere	ELGHVTCDGSDITVEVMGVNGASSSVDASATMTLRTGDVNADGVVNNTDLKEIRMEVGRGLVTEVNFRDDITVDGKVNHGDTTLEKSKL
Ga0207651_112758171	3300025960	Switchgrass Rhizosphere	GSVNSTTISGSTVTVELGHVTCVGSDITVTVPGVNGVSGSVDASATMTLRTGDVNADGVVNNTDLKEIRMNVGRGLVTKDNFRDDITIDGKVNHGDTTLEKSKL
Ga0207651_118672671	3300025960	Switchgrass Rhizosphere	TISDSTVTVELGQVGCDGSDIAVTVPGVNGASGSVDASATMTLRTGDVNADGIVNNTDLKEIRMNVGRGLVNGDNFRDDITVDGKVNHGDTTLEKSKL
Ga0207668_102023071	3300025972	Switchgrass Rhizosphere	IIVAVPGVNGASGSVDASATMTLRTGDVNADGVVNRTDPKEIKMSVGRGLVNDDNFRDDITVDGKINHGDTTLEKSKL
Ga0207668_105844041	3300025972	Switchgrass Rhizosphere	GRVNSTTVSGSTVTVELGHVTCDGSDITVTVPGVNGASGSVDASATMTLRTGDVNADGIVGTADLKDIKMHLGRGLVDGDNFRDDITVDGKVNHGDTTLEKSKL
Ga0207677_108719632	3300026023	Miscanthus Rhizosphere	VPGVNGASGSVDASATMTLRTGDVNADGRVGTADLKEIRMNVGRGLVNDDNFRDDITVDGKVNHGDTTLEKSKL
Ga0207683_109284902	3300026121	Miscanthus Rhizosphere	TVTVELGHVNCDGSNITVTVPGVNGASGSVDASATMTLRTGDVNADGALNNTDLKEIRMNVGRGLVNGDNFRDDITVDGKVNHGDTTLEKSKL
Ga0209970_10598071	3300027614	Arabidopsis Thaliana Rhizosphere	VELGHVTCDGSDITVTVPGVNGASGSVDASATMTLRTGDVNADGRVGTADLKEIKMNVGRGLVNEDNFRDDITVDGKVNHGDTTLEKSKL
Ga0209974_101178062	3300027876	Arabidopsis Thaliana Rhizosphere	ELGHVNCDGSDITVTVPGVNGASGAVDASASMTLRTGDVNADGVVGTADLKEIRMEVGRGLVTEDNFRDDITVDGKVNHGDTTLEKSKL
Ga0268266_103275391	3300028379	Switchgrass Rhizosphere	ELGHVTCDGSDITVTVPGVNGVSGSVDASATMTLRTGDVNADGVVNNTDLKEIRMNVGRGLVTKDNFRDDITIDGKVNHGDTTLEKSKL
Ga0268266_108127012	3300028379	Switchgrass Rhizosphere	DITVAVPGVNGASGSVDASATMTLRTGDVNADGIVGTADLKDIKMHLGRGLVDGDNFRDDITVDGKVNHGDTTLEKSKL
Ga0310907_102573542	3300031847	Soil	INGSTVTVELGHVTCDGSDITVTVPGVNGASGSVDASATMTLRTGDVNADGVVGTGDLKEIRMEVGRGLVNDDNFRDDITVDGKVNHGDTTLEKTKL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F089078

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences