Metagenome / Metatranscriptome Family F089173

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F089173
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	73 residues
Representative Sequence	MTATALQFQPRRSYRGRSFTRLVLNLINGFREAQEMAHRYEQLSHLSDVELAARKMRREDLPRIALTGRA
Number of Associated Samples	86
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	69.72 %
% of genes near scaffold ends (potentially truncated)	17.43 %
% of genes from short scaffolds (< 2000 bps)	81.65 %
Associated GOLD sequencing projects	78
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.44

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (58.716 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (34.862 % of family members)
Environment Ontology (ENVO)	Unclassified (39.450 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (50.459 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 45.92% β-sheet: 0.00% Coil/Unstructured: 54.08%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.44
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.44
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF00296	Bac_luciferase	11.93
PF13408	Zn_ribbon_recom	1.83
PF01738	DLH	1.83
PF03330	DPBB_1	1.83
PF13356	Arm-DNA-bind_3	0.92
PF02604	PhdYeFM_antitox	0.92
PF13432	TPR_16	0.92
PF00030	Crystall	0.92
PF01636	APH	0.92
PF06296	RelE	0.92
PF07978	NIPSNAP	0.92
PF06823	DUF1236	0.92
PF02887	PK_C	0.92
PF13520	AA_permease_2	0.92
PF13649	Methyltransf_25	0.92
PF00753	Lactamase_B	0.92
PF04339	FemAB_like	0.92
PF01068	DNA_ligase_A_M	0.92
PF13479	AAA_24	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	11.93
COG0469	Pyruvate kinase	Carbohydrate transport and metabolism [G]	0.92
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	0.92
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	0.92
COG2161	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	Defense mechanisms [V]	0.92
COG3146	Predicted N-acyltransferase	General function prediction only [R]	0.92
COG4118	Antitoxin component of toxin-antitoxin stability system, DNA-binding transcriptional repressor	Defense mechanisms [V]	0.92
COG4737	Uncharacterized conserved protein	Function unknown [S]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.72 %
All Organisms	root	All Organisms	41.28 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.72 %
cellular organisms	root	All Organisms → cellular organisms	41.28 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.72 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	41.28 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.72 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	29.36 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.72 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	18.35 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.72 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	12.84 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.72 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	3.67 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	1.83 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	1.83 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.83 %
Chelatococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Chelatococcaceae	0.92 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.72 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	3.67 %
Starkeya	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Starkeya	1.83 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	1.83 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.83 %
Chelatococcus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Chelatococcaceae → Chelatococcus	0.92 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.72 %
Mesorhizobium plurifarium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium plurifarium	3.67 %
Starkeya novella	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Starkeya → Starkeya novella	1.83 %
Bradyrhizobium septentrionale	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium septentrionale	0.92 %
Chelatococcus daeguensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Chelatococcaceae → Chelatococcus → Chelatococcus daeguensis	0.92 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	0.92 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.72 %
Mesorhizobium plurifarium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium plurifarium	3.67 %
Starkeya novella	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Starkeya → Starkeya novella	1.83 %
Rhodoplanes sp. JGI PP 4-B12	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. JGI PP 4-B12	0.92 %
Bradyrhizobium septentrionale	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium septentrionale	0.92 %
Chelatococcus daeguensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Chelatococcaceae → Chelatococcus → Chelatococcus daeguensis	0.92 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002906\|JGI25614J43888_10050923	All Organisms → cellular organisms → Bacteria	1248	Open in IMG/M
3300002910\|JGI25615J43890_1059726	Not Available	641	Open in IMG/M
3300002917\|JGI25616J43925_10107083	Not Available	1149	Open in IMG/M
3300004633\|Ga0066395_10000435	All Organisms → cellular organisms → Bacteria → Proteobacteria	15590	Open in IMG/M
3300004633\|Ga0066395_10218887	All Organisms → cellular organisms → Bacteria	1006	Open in IMG/M
3300005332\|Ga0066388_100306234	All Organisms → cellular organisms → Bacteria → Proteobacteria	2234	Open in IMG/M
3300005332\|Ga0066388_100920571	All Organisms → cellular organisms → Bacteria	1450	Open in IMG/M
3300005332\|Ga0066388_101131668	All Organisms → cellular organisms → Bacteria	1329	Open in IMG/M
3300005332\|Ga0066388_103360167	All Organisms → cellular organisms → Bacteria	817	Open in IMG/M
3300005764\|Ga0066903_100062913	All Organisms → cellular organisms → Bacteria	4658	Open in IMG/M
3300005764\|Ga0066903_100102100	All Organisms → cellular organisms → Bacteria	3881	Open in IMG/M
3300005764\|Ga0066903_100668783	All Organisms → cellular organisms → Bacteria → Proteobacteria	1821	Open in IMG/M
3300005764\|Ga0066903_108689753	Not Available	516	Open in IMG/M
3300006047\|Ga0075024_100396978	Not Available	701	Open in IMG/M
3300006057\|Ga0075026_100196447	All Organisms → cellular organisms → Bacteria	1059	Open in IMG/M
3300006102\|Ga0075015_100721494	All Organisms → cellular organisms → Bacteria	593	Open in IMG/M
3300006176\|Ga0070765_102172320	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Starkeya → Starkeya novella	518	Open in IMG/M
3300006354\|Ga0075021_10767809	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium plurifarium	621	Open in IMG/M
3300006893\|Ga0073928_11147161	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Starkeya → Starkeya novella	525	Open in IMG/M
3300007258\|Ga0099793_10035194	Not Available	2152	Open in IMG/M
3300007788\|Ga0099795_10017350	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2294	Open in IMG/M
3300007788\|Ga0099795_10339068	Not Available	670	Open in IMG/M
3300009038\|Ga0099829_10480299	Not Available	1031	Open in IMG/M
3300009088\|Ga0099830_10114071	Not Available	2036	Open in IMG/M
3300009089\|Ga0099828_10048514	All Organisms → cellular organisms → Bacteria → Proteobacteria	3514	Open in IMG/M
3300009090\|Ga0099827_11185785	All Organisms → cellular organisms → Bacteria → Proteobacteria	664	Open in IMG/M
3300009143\|Ga0099792_10313181	Not Available	936	Open in IMG/M
3300009143\|Ga0099792_10804424	Not Available	616	Open in IMG/M
3300009792\|Ga0126374_10843398	Not Available	704	Open in IMG/M
3300009839\|Ga0116223_10116667	Not Available	1678	Open in IMG/M
3300010047\|Ga0126382_10641940	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	881	Open in IMG/M
3300010358\|Ga0126370_12076735	Not Available	557	Open in IMG/M
3300010359\|Ga0126376_12399728	Not Available	574	Open in IMG/M
3300010360\|Ga0126372_10490087	Not Available	1151	Open in IMG/M
3300010360\|Ga0126372_11277387	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium plurifarium	762	Open in IMG/M
3300010362\|Ga0126377_10921579	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium plurifarium	937	Open in IMG/M
3300010362\|Ga0126377_12236793	Not Available	623	Open in IMG/M
3300010362\|Ga0126377_12259450	Not Available	620	Open in IMG/M
3300010366\|Ga0126379_10141044	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2228	Open in IMG/M
3300010366\|Ga0126379_11619931	Not Available	752	Open in IMG/M
3300010379\|Ga0136449_100517881	All Organisms → cellular organisms → Bacteria → Proteobacteria	2064	Open in IMG/M
3300010379\|Ga0136449_102977594	Not Available	662	Open in IMG/M
3300011269\|Ga0137392_10296186	All Organisms → cellular organisms → Bacteria	1337	Open in IMG/M
3300011270\|Ga0137391_10762668	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	800	Open in IMG/M
3300012199\|Ga0137383_10497611	Not Available	893	Open in IMG/M
3300012199\|Ga0137383_11150880	Not Available	560	Open in IMG/M
3300012200\|Ga0137382_10736312	Not Available	707	Open in IMG/M
3300012202\|Ga0137363_10227550	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium septentrionale	1507	Open in IMG/M
3300012203\|Ga0137399_10272049	Not Available	1394	Open in IMG/M
3300012205\|Ga0137362_11263064	Not Available	623	Open in IMG/M
3300012207\|Ga0137381_10739314	Not Available	854	Open in IMG/M
3300012208\|Ga0137376_10390675	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1208	Open in IMG/M
3300012208\|Ga0137376_11241759	Not Available	635	Open in IMG/M
3300012211\|Ga0137377_10071346	All Organisms → cellular organisms → Bacteria	3253	Open in IMG/M
3300012361\|Ga0137360_11249437	Not Available	642	Open in IMG/M
3300012582\|Ga0137358_10907715	Not Available	577	Open in IMG/M
3300012683\|Ga0137398_10424968	Not Available	907	Open in IMG/M
3300012917\|Ga0137395_10110222	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1841	Open in IMG/M
3300012917\|Ga0137395_10205226	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1373	Open in IMG/M
3300012924\|Ga0137413_10307494	Not Available	1110	Open in IMG/M
3300012925\|Ga0137419_10204553	Not Available	1464	Open in IMG/M
3300012927\|Ga0137416_10270458	Not Available	1396	Open in IMG/M
3300012927\|Ga0137416_11009774	Not Available	743	Open in IMG/M
3300012929\|Ga0137404_11033833	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	752	Open in IMG/M
3300014164\|Ga0181532_10151450	All Organisms → cellular organisms → Bacteria	1394	Open in IMG/M
3300015242\|Ga0137412_10176137	Not Available	1717	Open in IMG/M
3300016387\|Ga0182040_11164125	Not Available	648	Open in IMG/M
3300018468\|Ga0066662_10541866	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1073	Open in IMG/M
3300021086\|Ga0179596_10087100	Not Available	1392	Open in IMG/M
3300021178\|Ga0210408_10052649	Not Available	3183	Open in IMG/M
3300021180\|Ga0210396_10940473	All Organisms → cellular organisms → Bacteria → Proteobacteria	735	Open in IMG/M
3300021404\|Ga0210389_10103469	All Organisms → cellular organisms → Bacteria	2194	Open in IMG/M
3300021420\|Ga0210394_11216280	All Organisms → cellular organisms → Bacteria → Proteobacteria	646	Open in IMG/M
3300021478\|Ga0210402_11585979	Not Available	582	Open in IMG/M
3300021560\|Ga0126371_10321249	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Chelatococcaceae → Chelatococcus → Chelatococcus daeguensis	1678	Open in IMG/M
3300021560\|Ga0126371_12164770	Not Available	671	Open in IMG/M
3300021860\|Ga0213851_1342867	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. JGI PP 4-B12	670	Open in IMG/M
3300024288\|Ga0179589_10239263	Not Available	804	Open in IMG/M
3300026304\|Ga0209240_1081185	Not Available	1194	Open in IMG/M
3300026304\|Ga0209240_1289451	Not Available	507	Open in IMG/M
3300026320\|Ga0209131_1003307	All Organisms → cellular organisms → Bacteria → Proteobacteria	10738	Open in IMG/M
3300026320\|Ga0209131_1238555	Not Available	764	Open in IMG/M
3300026320\|Ga0209131_1392718	Not Available	518	Open in IMG/M
3300026355\|Ga0257149_1032784	Not Available	732	Open in IMG/M
3300026356\|Ga0257150_1048947	Not Available	625	Open in IMG/M
3300026358\|Ga0257166_1023146	Not Available	828	Open in IMG/M
3300026360\|Ga0257173_1072373	Not Available	511	Open in IMG/M
3300026361\|Ga0257176_1091684	Not Available	500	Open in IMG/M
3300026446\|Ga0257178_1017799	Not Available	832	Open in IMG/M
3300026480\|Ga0257177_1053373	Not Available	629	Open in IMG/M
3300026494\|Ga0257159_1031683	Not Available	881	Open in IMG/M
3300026496\|Ga0257157_1003460	Not Available	2349	Open in IMG/M
3300027643\|Ga0209076_1137660	Not Available	686	Open in IMG/M
3300027826\|Ga0209060_10021607	All Organisms → cellular organisms → Bacteria → Proteobacteria	3362	Open in IMG/M
3300027874\|Ga0209465_10003215	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	7082	Open in IMG/M
3300027875\|Ga0209283_10996030	Not Available	500	Open in IMG/M
3300027898\|Ga0209067_10230999	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	1001	Open in IMG/M
3300027903\|Ga0209488_10811690	Not Available	662	Open in IMG/M
3300027905\|Ga0209415_10077381	All Organisms → cellular organisms → Bacteria → Proteobacteria	3873	Open in IMG/M
3300027915\|Ga0209069_10063829	Not Available	1743	Open in IMG/M
3300028536\|Ga0137415_10330319	Not Available	1328	Open in IMG/M
3300030730\|Ga0307482_1287000	Not Available	526	Open in IMG/M
3300031022\|Ga0138301_1469543	Not Available	564	Open in IMG/M
3300031740\|Ga0307468_100310582	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium plurifarium	1151	Open in IMG/M
3300031820\|Ga0307473_10032557	Not Available	2289	Open in IMG/M
3300031912\|Ga0306921_10061657	All Organisms → cellular organisms → Bacteria → Proteobacteria	4281	Open in IMG/M
3300032174\|Ga0307470_10441937	Not Available	933	Open in IMG/M
3300032180\|Ga0307471_100472123	Not Available	1398	Open in IMG/M
3300032180\|Ga0307471_102103338	Not Available	710	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	91.74%
Aquatic	Environmental → Aquatic	8.26%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	91.74%
Sediment	Environmental → Aquatic → Sediment	5.50%
Freshwater	Environmental → Aquatic → Freshwater	1.83%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	80.73%
Loam	Environmental → Terrestrial → Soil → Loam	11.01%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.50%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.92%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.92%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	51.38%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	21.10%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	11.01%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	8.26%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.50%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.92%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.92%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.92%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	34.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	13.76%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	11.93%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	10.09%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	8.26%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	5.50%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	5.50%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	3.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.83%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	0.92%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.92%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.92%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002906	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm	Environmental	Open in IMG/M
3300002910	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm	Environmental	Open in IMG/M
3300002917	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006047	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013	Environmental	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300009839	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014164	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300021860	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2014 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300026304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)	Environmental	Open in IMG/M
3300026320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)	Environmental	Open in IMG/M
3300026355	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-02-A	Environmental	Open in IMG/M
3300026356	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-A	Environmental	Open in IMG/M
3300026358	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-14-B	Environmental	Open in IMG/M
3300026360	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-19-B	Environmental	Open in IMG/M
3300026361	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-B	Environmental	Open in IMG/M
3300026446	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-11-B	Environmental	Open in IMG/M
3300026480	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-07-B	Environmental	Open in IMG/M
3300026494	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-07-A	Environmental	Open in IMG/M
3300026496	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-69-A	Environmental	Open in IMG/M
3300027643	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes)	Environmental	Open in IMG/M
3300027826	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300030730	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031022	Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A3_MS_spring Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25614J43888_100509232	3300002906	Grasslands Soil	MTTIALQIPSGRAYPRRSFTRLVLNLINGFREAQEISYRYEQLAHLSDAELTARGMRREDLPRIALTGRA*
JGI25615J43890_10597262	3300002910	Grasslands Soil	MNVYSFFDLRWTMTATALQLRPRHSYRGRSFTRLVLNLINGFREAQEMAHRYEQLSHLSDVELAARKMRRQDLPRIALAGRA*
JGI25616J43925_101070832	3300002917	Grasslands Soil	MNVYSFFDLRWTMTATALQLRPRHSYRGRSFTRLVLNLINGFREAQEMAHRYEQLSHLSDVELAARKMRRQDLPRIALTGRA*
Ga0066395_100004353	3300004633	Tropical Forest Soil	MTAIALQFPSGRDYPRRSFKRLVLNLINGFREAREISHRYEELSHLSDTQLAARGMRREDLPRIALTGRA*
Ga0066395_102188871	3300004633	Tropical Forest Soil	MKAIALQFPSGRHYPRRSLTRLVLNIINGFREAQQISRRYEQLSHLPDAELAARGMRREDLPRIALTRGA*
Ga0066388_1003062343	3300005332	Tropical Forest Soil	MTATALQFQPRRSYPGGSFTRLVLHLINGFREAQEMAHRYEQLSHLSDVELAARKMRREDLPRIALTGRA*
Ga0066388_1009205711	3300005332	Tropical Forest Soil	MTTVALQSRCDRDDRHWSFRRLVLNLINGFREAQAISYRYAQLSHLSDAELTKLGMRREDLPRIALNGRA*
Ga0066388_1011316681	3300005332	Tropical Forest Soil	MSAIALQFPSGRDYPRRSFTRLVRNLINGFREAQKISYCYEQLSHLSDAELAARGMRREDLPRIALTGRL*
Ga0066388_1033601672	3300005332	Tropical Forest Soil	MSAIAPQFPSGRDYPRRGFTRLVLNLINGFREAQEISYRYDQLSHLSDAELASRGMRREDVPRIALTGGL*
Ga0066903_1000629135	3300005764	Tropical Forest Soil	MTATALQIQPRRSYRGQSFTRLVLHLINGFREAQEIAHRYDQLSHLSDVELAARKMRREDLPRIALTGRA*
Ga0066903_1001021002	3300005764	Tropical Forest Soil	MKAIALQFPSGRHYPRRSLTRLVLNIINGFREAQQISHRYEQLSHLPDAELAARGIRREDLPRIALTRGA*
Ga0066903_1006687831	3300005764	Tropical Forest Soil	MSAIAPQFPSGRDYPRRGFTRLVLNLINGFREAQEISYRYDQLSHLSDAELAARGMRREDVPRIALTGGL*
Ga0066903_1086897532	3300005764	Tropical Forest Soil	HYPRRSLTRLVLNIINGFREAQQISRRYEQLSHLPDAELAARGMRREDLPRIALTRGA*
Ga0075024_1003969781	3300006047	Watersheds	MTALALQFPSGRDYPRRSFTRFVLNLINGFREAQDIANRYAQLSHLSDAELAALKMRREDLPRIALRGRA*
Ga0075026_1001964472	3300006057	Watersheds	MMTALALQFPSGRDYPRRSFTRFVLNLINGFREAQDIANRYAQLSHLSDAELAALKMRREDLPRIALRGRT*
Ga0075015_1007214941	3300006102	Watersheds	MTAIALQFPSGRASPRRGFMRLVRNLVDGFREARDISYRYEQLSHLSDAELAALKLRREDLPRIAFSGRM*
Ga0070765_1021723201	3300006176	Soil	MTTIALNLPSGRGNPRRSFTRLVRNLISGFREAQAVSYRYAQLSHLSDDALAARKLRREDLPRIALTGGA*
Ga0075021_107678093	3300006354	Watersheds	MTAIALQLPSGRGYPRRGFKRLVLNLIDGFREAQEISDRYRQLAHLSDADLTARGLRREDLPRIAFTGRA*
Ga0073928_111471611	3300006893	Iron-Sulfur Acid Spring	MTAIALPSGRAYPPYSFTRLLLNLIHTFREAQQISYRYEQLTHLSDAELATRKIRREDLARIAYTGRNAA*
Ga0099793_100351943	3300007258	Vadose Zone Soil	MNVYSFFDLRWTMTATALQFRPRHSYRGRSFTRLVLNLINGFREAQEMAHRYEQLSHLSDVELAARKMRRQDLPRIALTGRA*
Ga0099795_100173502	3300007788	Vadose Zone Soil	MNVYSFFDLRWTMTATALQLRPRHSYRGRSFTRLVLNLINGFREAQEMAHRYEQLSHLSDVELAARNMRRQDLPRIALTGRA*
Ga0099795_103390682	3300007788	Vadose Zone Soil	MTATALQFQPRRSYRGRSLTRLVLNLINGFREAQEMAHRYEQISHLSDVELAARKMRREDLPRIALTGRA*
Ga0099829_104802992	3300009038	Vadose Zone Soil	MTATALQFQPRRSYRGRSFTRLVLNLINGFREAQEMAHRYEQLSHLSDVELAARKMRREDLPRIALTGRA*
Ga0099830_101140713	3300009088	Vadose Zone Soil	MTATALQFQPRRSYRGRSFTRLVLNLINGFREAQEMAHRYEQLSHLSDVELAARKMRRQDLPRIALTGRA*
Ga0099828_100485141	3300009089	Vadose Zone Soil	MTATALQFQPRRSYRGRSFTRLVLNLINGFRETQEMAHRYEQLSHLSDVELAARKMRREDLPRIALTGRA*
Ga0099827_111857852	3300009090	Vadose Zone Soil	MTTIALQFPSGRGYPRRSFTRLVLNLINGFREAQAISYRHAQLSHLSDAALAALKMRREDLPRIALRGRR*
Ga0099792_103131811	3300009143	Vadose Zone Soil	MTATALQLRPRHSYRGRSFTRLVLNLINGFREAQEMAHRYEQLSHLSDVELAARKMRRQDLPRIALTGRA*
Ga0099792_108044241	3300009143	Vadose Zone Soil	TTIALQIPSGRAYPRRSFTRLVLNLINGFREAQEISYRYEQLAHLSDAELTARGMRREDLPRIALTGRV*
Ga0126374_108433981	3300009792	Tropical Forest Soil	MNAYSFFDLRWTMTATALQLRPRHSYRGRYFTRLVLNLINGFREAQEMAHRYEQLSHLSDVELAALKMRRQDLPRIALTGRA*
Ga0116223_101166671	3300009839	Peatlands Soil	MTAIALQFPSGRDYPRRSLTRLVLNLINGFREAQAISYRYAQLSHLSDGELAARNIRREDLPRIAFTGRA*
Ga0126382_106419402	3300010047	Tropical Forest Soil	MTATALQFQPRRSYRGRRFTRLVLHLINGFREAQEMAHRYEQLSHLSDVELAARKMRRGDLPRIALTGRA*
Ga0126370_120767351	3300010358	Tropical Forest Soil	MTAIALQFPSGRDYPRRSFKRLVLNLINGLREAREISHRYEELSHLSDTQLAARGMRREDLPRIALTGRA*
Ga0126376_123997281	3300010359	Tropical Forest Soil	MTTIALQSPSDRNDRHWSFARLVLNLINGFREAQAISYRYTQLSHLSDAELTKLGMRREDLPRIALNGRA*
Ga0126372_104900872	3300010360	Tropical Forest Soil	MTATALQIQPRRSYRGRSFTRLVLHLINGFREAQEIAHRYEQLSHLSDVELAARKMRREDLPRIAFTGRA*
Ga0126372_112773872	3300010360	Tropical Forest Soil	MTAIALQSSSDRDDRHGSFRRLLLNLINGFREAQAISYRYAQLSHLSDAELTKLGMRREDLPRIALNGRA*
Ga0126377_109215792	3300010362	Tropical Forest Soil	MTTIALQSPSDRNDRHWSFARLVLNLINGFREAQAISYRYTQLSHLSDAELTKLGMRREDLPRIALNGQA*
Ga0126377_122367932	3300010362	Tropical Forest Soil	MTATALQFQPRRNYPGRSFTRLALHLINGFREAQEMAHRYEQLSHLSDVELAARKMRREDLPRIALTGRA*
Ga0126377_122594502	3300010362	Tropical Forest Soil	MTAIALQSPSDRDDRHRSFKRLLLNLINGFREAQAISYRYAQLSHLSDAELTKLGMRREDLPRIALNGRA*
Ga0126379_101410443	3300010366	Tropical Forest Soil	MSAIAPQFPSGRDYPRRGFTRLVLNLINGFREAQEISYRYDQLSHLSDAELASRGMRREDVPRIALTSGL*
Ga0126379_116199311	3300010366	Tropical Forest Soil	MTATALQIQPRRSYRGGSFTRLVLHLINGFREAQEIAHRYEQLSHLSDVELAARKMRREDLPRIALTGRA*
Ga0136449_1005178813	3300010379	Peatlands Soil	MTAIALQFPSDRDYPRRSLTRLVLNLINGFREAQAISHRYAQLSHLSDDELAARNIRREDLPRIAFTGRA*
Ga0136449_1029775942	3300010379	Peatlands Soil	MTAIALQFPSGRDYPRRSLTRLVLNLINGFREAQAISYRYAQLSHLSDDELAARNIRREDLPRIAFTGRA*
Ga0137392_102961861	3300011269	Vadose Zone Soil	MTATALQLRPRHSYRGRSFTRLVLNLINGFREAQEMAHRYEQLSHLSDVELAARNMRRQDLPRIALTGRA*
Ga0137391_107626682	3300011270	Vadose Zone Soil	MIAIALQFPSGRAYPRRSFTRLVLNLINGFREAQEISHRYAQLSHLSDAELAALKMRREDLPRIALTGRT*
Ga0137383_104976112	3300012199	Vadose Zone Soil	MTATALQFQPRRSYRGRSFTRLVLNLINGFREAQEMADRYEQLSHLSDVELAARKMRREDLPRIALTGRA*
Ga0137383_111508801	3300012199	Vadose Zone Soil	MTTTARQFQPRRSYRGRSFTRLVLHLINGFREAQEMVHRYEQLSHLSDVKLAARNMRREDLPQIALTGRA*
Ga0137382_107363121	3300012200	Vadose Zone Soil	MTATALQFQPRRSYRGRSFTRLVLNLINGFREAQEMADRYEQLSHLSDVELAARKMRREDLPRIALTGPSVSPRCTVVPDASPPE*
Ga0137363_102275503	3300012202	Vadose Zone Soil	MTATALQFQPRGSYRGRSFTRLVLNLINGCREAQEMAHRYEQLSHLSDVELAARKMRREDLPRIALTGRA*
Ga0137399_102720493	3300012203	Vadose Zone Soil	FDLRWTMTATALQLRPRHSYRGRSFTRLVLNLINGFREAQEMAHRYEQLSHLSDVELAARNMRRQDLPRIALTGRA*
Ga0137362_112630642	3300012205	Vadose Zone Soil	MNFYSFFDLRWTMTATALQLRPRHSYRGRRFTRLVLNLINGFREAQEMAHRYEQLSHLSDVELAARKMRREDLPRIA
Ga0137381_107393142	3300012207	Vadose Zone Soil	MTTTALQFQPRRSYRGRSFTRLVLHLINGFREAQEMVHRYEQLSHLSDVELAARNMRREDLPQIALTGRA*
Ga0137376_103906752	3300012208	Vadose Zone Soil	MTATALQFQPRRSYRGRRFTRLVLNLINGFREAQEMADRYEQLSHLSDVELAARKMRREDLPRIALTGPSVSPRCTVVPDASPPE*
Ga0137376_112417591	3300012208	Vadose Zone Soil	MNAYSFFDLRWTMTATALQLRPRHSYRGRHFTRLVLNLINGFREAQEMAHRYEQLSHLSDVELAARKMRRQDLPRIALTGRA*
Ga0137377_100713461	3300012211	Vadose Zone Soil	FLFDLRWTMTATALQFQPRRSYRGRRFTRLVLNLINGFREAQEMADRYEQLSHLSDVELAARKMRREDLPRIALTGPSVSPRCTVVPDASPPE*
Ga0137360_112494371	3300012361	Vadose Zone Soil	PRHSYRGRSFTRLVLNLINGFREAQEMAHRYEQLSHLSDVELAARKMRRQDLPRIALTGRA*
Ga0137358_109077151	3300012582	Vadose Zone Soil	MNAYSFFDLRWTMTATALQLRPRHSYRGRSFTRLVLNPNHGFRDAQETAHRYAQLSHLSDVELAARKMRREDLPRIALTGRA*
Ga0137398_104249681	3300012683	Vadose Zone Soil	MKVYSFFDLRWTMTATALQLRPRHSYRGRSFTRLVLNLINGFSEAQEMAHRYEQLSHLSDVELAARNMRRQDLPRIALTGRA*
Ga0137395_101102224	3300012917	Vadose Zone Soil	MTATALQFQPRRSYRGRSFTRLVLNLINGFREAQEMAHRYEQISHLSDVELAARKMRREDLPRIALTGRA*
Ga0137395_102052262	3300012917	Vadose Zone Soil	MTALALKYPPGRDDPRRGFTRLVLNLINGFREAQDISHRYAELSHLSDSELAALKMRREDLPRIALRGGR*
Ga0137413_103074941	3300012924	Vadose Zone Soil	MNVYSFFDLRWTMTATALQFQPRRSYRGRSFTRLVLNLINGVREAQEMAHRYEQLSHLSDVELAARKMRRQDLPRIALTGRA*
Ga0137419_102045532	3300012925	Vadose Zone Soil	MNVYSFFDLRWTMTATALQLRPRHSYRGRRFTRLVLNLINGFREAQEMAHRYEQLSHLSDVELAARNMRRQDLPRIALTGRA*
Ga0137416_102704581	3300012927	Vadose Zone Soil	MTATALQFQPLGSYRGRSFTRLVLNLINGFREAQEMAHRYEQLSHLSDVELAARKMRREDLPRIALTGRA*
Ga0137416_110097741	3300012927	Vadose Zone Soil	MNVYSFFDLRWTMTATALQLRPRHSYRGRSFTRLVLNLINGFREAQQMAHRYEQLSHLSDVELAARNMRRQDLP
Ga0137404_110338331	3300012929	Vadose Zone Soil	MTATALQFQPCRSYRGRSFTRLVLNLINGFREAQEMADRYEQLSHLSDVELAARKMRREDLPRIALTGRA*
Ga0181532_101514504	3300014164	Bog	MTALALQFPSGRDNARRGFTRLFRDLINGFREARDISYRYQQLSHLSDAELAALKMRREDLPRIALRGRT*
Ga0137412_101761371	3300015242	Vadose Zone Soil	MNVYSFFDLRWTMTATALQLRPRHSHRGRSFTRLVLNLINGFREAQEMAHRYEQLSHLSDVELAARKMRRQDLPRIALTGRA*
Ga0182040_111641252	3300016387	Soil	MTATALQFSPRRSYLGGSVTRLFLNLVDGFREAQEISHRYEQLSHLSDAELAALKMRREDLPRIA
Ga0066662_105418662	3300018468	Grasslands Soil	MTATALQFQPCRSYRGRSFTRLVLNLINGFREAQEMADRYEQLSHLSDVELAARKMRREDLPRIALTGPSVSPRCTVVPDASPPE
Ga0179596_100871003	3300021086	Vadose Zone Soil	MTATALQFQPRRSYRGRSFTRLVLNLINGFREAQEMAHRYEQLSHLSDVELAARKMRREDLPRIALTGRA
Ga0210408_100526492	3300021178	Soil	MTTIALQIPSGRAYPRRSFTRLVLNLINGFREAQEISYRYEQLAHLSDAELTARGMRREDLPHIALTGRV
Ga0210396_109404732	3300021180	Soil	MTTIALNLPSGRGNPRRSFTRLVRNLISGFREAQAVSYRYAQLSHLSDDALAARKLRREDLPRIALTGGA
Ga0210389_101034693	3300021404	Soil	MTATALQIQPRRSYRGRSFTRFVLHLVNGFLEAREIARRYEQLSHLSDVELAARKMRREDLPRIALTGRA
Ga0210394_112162802	3300021420	Soil	RWTMTAIALNLPSGRGNPRRSFTRLVRNLISGFREAQAVSYRYAQLSHLSDDALAARKLRREDLPRIALTGRA
Ga0210402_115859791	3300021478	Soil	MNVYSFFDLRWTMTATALQLRPRQSYRGRSFTRLVLNLINGFREAQEMAHRYEQLSHLSDVELAARKMRRQDLPRIALTGS
Ga0126371_103212493	3300021560	Tropical Forest Soil	MKAIALQFPSGRHYPRRSLTRLVLNIINGFREAQQISHRYEQLSHLPDAELAARGIRREDLPRIALTGRV
Ga0126371_121647701	3300021560	Tropical Forest Soil	MSAIAPQFPSGRDYPRRGFTRLVLNLINGFREAQEISYRYDQLSHLSDAELASRGMRREDVPRIALTGGL
Ga0213851_13428672	3300021860	Watersheds	MTAIALQFPSGRASPRRGFMRLVRNLVDGFREARDISYRYEQLSHLSDAELAALKLRREDLPRIAFSGRM
Ga0179589_102392632	3300024288	Vadose Zone Soil	MNVYSFFDLRWTMTATALQLRPRHSYRGRSFTRLVLNLINGFREAQEMAHRYEQLSHLSDVELAARKMRRQDLPRIALTGRA
Ga0209240_10811851	3300026304	Grasslands Soil	MNVYSFFDLRWTMTATALQLRPRHSYRGRSFTRLVLNLINGFREAQEMAHRYEQLSHLSDVELAARKMRRQDLPRIALAGRA
Ga0209240_12894511	3300026304	Grasslands Soil	MTTIALQIPSGRAYPRRSFTRLVLNLINGFREAQEISYRYEQLAHLSDAELTARGMRREDLPRIALTGRA
Ga0209131_10033079	3300026320	Grasslands Soil	MTATALQLRPRHSYRGRSFTRLVLNLINGFREAQEMAHRYEQLSHLSDVELAARKMRREDLPRIALTGRA
Ga0209131_12385551	3300026320	Grasslands Soil	MTATALQLRPRHSYRGRFTRLVLNLINGFREAQEMAHRYEQLSHLSDVELAARKMRRQDLPRIALTGRA
Ga0209131_13927181	3300026320	Grasslands Soil	MTATALQFQPRRSYRGRSFTRLVLNLINGFREAQEMAHRYEQLSHLSDVELAARKMRR
Ga0257149_10327841	3300026355	Soil	MTTIALQIPSGRAYPRRSFTRLVLNLINGFREAQEISYRYEQLAHLSDAELTARGMRRED
Ga0257150_10489471	3300026356	Soil	MNAYSFFDLRWTMTATALQLRPRYSYRGRRFTRLVLNLINGFREAQEMAHRYEQLSHLSDVELAARNMRRQDLPRIALTGRA
Ga0257166_10231462	3300026358	Soil	QLRPRHSYRGRSFTRLVLNLINGFREAQEMAHRYEQLSHLSDVELAARKMRRQDLPRIALTGRA
Ga0257173_10723731	3300026360	Soil	MTATALQLRPRHSYRGRSFTRLVLNLINGFREAQEMAHRYEQLSHLSDVELAARNMRRQDLPRIALTGRA
Ga0257176_10916841	3300026361	Soil	MNVYSFFDLRWTMTATALQLRPRQSYRGRSFTRLVLNLINGFREAQEMAHRYEQLSHLSDVELAARKMRRQDLPRIALTGRA
Ga0257178_10177992	3300026446	Soil	MNVYSFFDLRWTMTATALQLRPRHSYRGRSFTRLVLNLINGFREAQEMAHRYEQLSHLSDVELAARNMRRQD
Ga0257177_10533732	3300026480	Soil	MTATALQFQPRHSYRGRSFTRLVLNLINGFREAQEMAHRYEQLSHLSDVELAARNMRRQDLPRIALTGRA
Ga0257159_10316831	3300026494	Soil	MNAYSFFDLRWTMTATALQLRPRHSYRGRSFTRLVLNLINGFREAQEMAHRYEQLSHLSDVELAARNMRRQDLPRIALTGRA
Ga0257157_10034602	3300026496	Soil	MTTIALQIPSGRAYPRRSFTRLVLNLINGFREAQEISYRYEQLAHLSDAELSARGMHREDLPHIALIGRM
Ga0209076_11376602	3300027643	Vadose Zone Soil	MNVYSFFDLRWTMTATALQFRPRHSYRGRSFTRLVLNLINGFREAQEMAHRYEQLSHLSDVELAARKMRREDLPRIALTGRA
Ga0209060_100216072	3300027826	Surface Soil	MTAIALQFSSERGHPRRGFIRLVLDFIDGFREARVVAHRYRQLSHLSDDQLTTLGLRREDLPRIAFAGRGVTAAR
Ga0209465_100032153	3300027874	Tropical Forest Soil	MTAIALQFPSGRDYPRRSFKRLVLNLINGFREAREISHRYEELSHLSDTQLAARGMRREDLPRIALTGRA
Ga0209283_109960301	3300027875	Vadose Zone Soil	MTATALQFQPRRSYRGRSFTRLVLNLINGFRETQEMAHRYEQLSHLSDVELAARKMRREDLPRIALTGRA
Ga0209067_102309992	3300027898	Watersheds	MTAIALQFPSGRDSPRGGFMRLVRNLINGFREARDISYRYEQLSHLSDAELAALKLRREDLPRIALGGRM
Ga0209488_108116902	3300027903	Vadose Zone Soil	TTIALQIPSGRAYPRRSFTRLVLNLINGFREAQEISYRYEQLAHLSDAELTARGMRREDLPRIALTGRV
Ga0209415_100773812	3300027905	Peatlands Soil	MTAIALQFPSGRDYPRRSLTRLVLNLINGFREAQAISYRYAQLSHLSDDELAARNIRREDLPRIAFTGRA
Ga0209069_100638292	3300027915	Watersheds	MTALALQFPSGRDYPRRSFTRFVLNLINGFREAQDIANRYAQLSHLSDAELAALKMRREDLPRIALRGRA
Ga0137415_103303192	3300028536	Vadose Zone Soil	MTATALQFQPLGSYRGRSFTRLVLNLINGFREAQEMAHRYEQLSHLSDVELAARKMRRQDLPRIALTGRA
Ga0307482_12870001	3300030730	Hardwood Forest Soil	MTAIALNLPSGRGNPRRSFTRLVLNLIDGFREAQAISYRYAQLSHLSDDALAARKMRREDLPRIALTGRP
Ga0138301_14695431	3300031022	Soil	LRWTMTATALQLRPRHSYRGRRFTRLVLNLINGFREAQEMVHRYEQLSHLSDVELAARKMRRQDLPRIALTGRA
Ga0307468_1003105822	3300031740	Hardwood Forest Soil	MTTLALQSRCDRDDRHWSFRRLVLDLINGFREAQAISYRYAQLSHLSDAELTKLGMRREDLPRIALNGRA
Ga0307473_100325572	3300031820	Hardwood Forest Soil	MTTLALQSRCDRDDRHWSFRRLVLNLINGFREAQAISYRYAQLSHLSDAELTKLGMRREDLPRIALNGRA
Ga0306921_100616578	3300031912	Soil	MSAIALQFPSDRDYPRSSFTPCLNLINGFREAQEISYRYEQLSHLSDAEFAPHGIPRQDLARIALTSGL
Ga0307470_104419371	3300032174	Hardwood Forest Soil	MTATALQLRPRHSYRGRYFTRLVLNLINGFREAQEMAHRYDQLSHLSDVELAARKMRRQDLPRIALTGRA
Ga0307471_1004721232	3300032180	Hardwood Forest Soil	MTAIALQIPSGRAYPRRSFTRLVLNLINGFREAQEISYRYEQLAHLSDAELTARGMRREDLPHIALTGRV
Ga0307471_1021033381	3300032180	Hardwood Forest Soil	MNVYSFFDLRWTMTATALQLRPRHSYRGRSFTRLVLNLINGFREAQEMAHRYEQLSHLSDVELAARKMRRQDLARIALTGRA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F089173

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences