Metagenome / Metatranscriptome Family F089195

Basic Information
Family ID	F089195
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	52 residues
Representative Sequence	MSRLLASLDAPPSGRFRPVWFDAAAYGRARLLGGGDLPWQAPAELTSFFGK
Number of Associated Samples	99
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	98.17 %
% of genes near scaffold ends (potentially truncated)	98.17 %
% of genes from short scaffolds (< 2000 bps)	93.58 %
Associated GOLD sequencing projects	97
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.34

Most Common Taxonomy
Group	Bacteria (59.633 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (12.844 % of family members)
Environment Ontology (ENVO)	Unclassified (23.853 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (45.872 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 34.18% β-sheet: 0.00% Coil/Unstructured: 65.82%
Feature Viewer

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Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF02538	Hydantoinase_B	29.36
PF01968	Hydantoinase_A	1.83
PF01169	UPF0016	0.92
PF00941	FAD_binding_5	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG0146	N-methylhydantoinase B/oxoprolinase/acetone carboxylase, alpha subunit	Amino acid transport and metabolism [E]	58.72
COG2119	Putative Ca2+/H+ antiporter, TMEM165/GDT1 family	General function prediction only [R]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	60.55 %
Unclassified	root	N/A	39.45 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	60.55 %
Unclassified	root	N/A	39.45 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	59.63 %
Unclassified	root	N/A	39.45 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.45 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	23.85 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	5.50 %
Opisthokonta	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.45 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	23.85 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	5.50 %
Metazoa	kingdom	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.45 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	22.02 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	5.50 %
Eumetazoa	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.45 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	7.34 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	5.50 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	4.59 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.92 %
Bilateria	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.45 %
Cupriavidus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus	5.50 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	4.59 %
Nocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae	3.67 %
Protostomia	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia	0.92 %
Intrasporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.45 %
unclassified Cupriavidus	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → unclassified Cupriavidus	5.50 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	4.59 %
Rhodococcus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus	3.67 %
Ecdysozoa	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa	0.92 %
Tetrasphaera	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Tetrasphaera	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.45 %
Cupriavidus sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → unclassified Cupriavidus → Cupriavidus sp.	5.50 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	4.59 %
Rhodococcus opacus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus → Rhodococcus opacus	3.67 %
Tetrasphaera japonica	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Tetrasphaera → Tetrasphaera japonica	0.92 %
Panarthropoda	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.45 %
Cupriavidus sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → unclassified Cupriavidus → Cupriavidus sp.	5.50 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	4.59 %
Rhodococcus opacus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus → Rhodococcus opacus	3.67 %
Arthropoda	phylum	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda	0.92 %
Tetrasphaera japonica	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Tetrasphaera → Tetrasphaera japonica	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.45 %
Cupriavidus sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → unclassified Cupriavidus → Cupriavidus sp.	5.50 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	4.59 %
Rhodococcus opacus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus → Rhodococcus opacus	3.67 %
Mandibulata	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata	0.92 %
Tetrasphaera japonica	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Tetrasphaera → Tetrasphaera japonica	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.45 %
Cupriavidus sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → unclassified Cupriavidus → Cupriavidus sp.	5.50 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	4.59 %
Rhodococcus opacus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus → Rhodococcus opacus	3.67 %
Pancrustacea	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea	0.92 %
Tetrasphaera japonica	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Tetrasphaera → Tetrasphaera japonica	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.45 %
Cupriavidus sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → unclassified Cupriavidus → Cupriavidus sp.	5.50 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	4.59 %
Rhodococcus opacus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus → Rhodococcus opacus	3.67 %
Hexapoda	subphylum	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda	0.92 %
Tetrasphaera japonica	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Tetrasphaera → Tetrasphaera japonica	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.45 %
Cupriavidus sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → unclassified Cupriavidus → Cupriavidus sp.	5.50 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	4.59 %
Rhodococcus opacus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus → Rhodococcus opacus	3.67 %
Insecta	class	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta	0.92 %
Tetrasphaera japonica	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Tetrasphaera → Tetrasphaera japonica	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.45 %
Cupriavidus sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → unclassified Cupriavidus → Cupriavidus sp.	5.50 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	4.59 %
Rhodococcus opacus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus → Rhodococcus opacus	3.67 %
Dicondylia	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia	0.92 %
Tetrasphaera japonica	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Tetrasphaera → Tetrasphaera japonica	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.45 %
Cupriavidus sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → unclassified Cupriavidus → Cupriavidus sp.	5.50 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	4.59 %
Rhodococcus opacus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus → Rhodococcus opacus	3.67 %
Pterygota	subclass	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota	0.92 %
Tetrasphaera japonica	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Tetrasphaera → Tetrasphaera japonica	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.45 %
Cupriavidus sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → unclassified Cupriavidus → Cupriavidus sp.	5.50 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	4.59 %
Rhodococcus opacus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus → Rhodococcus opacus	3.67 %
Neoptera	infraclass	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera	0.92 %
Tetrasphaera japonica	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Tetrasphaera → Tetrasphaera japonica	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.45 %
Cupriavidus sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → unclassified Cupriavidus → Cupriavidus sp.	5.50 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	4.59 %
Rhodococcus opacus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus → Rhodococcus opacus	3.67 %
Paraneoptera	cohort	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Paraneoptera	0.92 %
Tetrasphaera japonica	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Tetrasphaera → Tetrasphaera japonica	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.45 %
Cupriavidus sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → unclassified Cupriavidus → Cupriavidus sp.	5.50 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	4.59 %
Rhodococcus opacus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus → Rhodococcus opacus	3.67 %
Hemiptera	order	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Paraneoptera → Hemiptera	0.92 %
Tetrasphaera japonica	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Tetrasphaera → Tetrasphaera japonica	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.45 %
Cupriavidus sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → unclassified Cupriavidus → Cupriavidus sp.	5.50 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	4.59 %
Rhodococcus opacus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus → Rhodococcus opacus	3.67 %
Sternorrhyncha	suborder	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Paraneoptera → Hemiptera → Sternorrhyncha	0.92 %
Tetrasphaera japonica	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Tetrasphaera → Tetrasphaera japonica	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.45 %
Cupriavidus sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → unclassified Cupriavidus → Cupriavidus sp.	5.50 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	4.59 %
Rhodococcus opacus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus → Rhodococcus opacus	3.67 %
Coccoidea	superfamily	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Paraneoptera → Hemiptera → Sternorrhyncha → Coccoidea	0.92 %
Tetrasphaera japonica	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Tetrasphaera → Tetrasphaera japonica	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.45 %
Cupriavidus sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → unclassified Cupriavidus → Cupriavidus sp.	5.50 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	4.59 %
Rhodococcus opacus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus → Rhodococcus opacus	3.67 %
Coccidae	family	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Paraneoptera → Hemiptera → Sternorrhyncha → Coccoidea → Coccidae	0.92 %
Tetrasphaera japonica	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Tetrasphaera → Tetrasphaera japonica	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.45 %
Cupriavidus sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → unclassified Cupriavidus → Cupriavidus sp.	5.50 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	4.59 %
Rhodococcus opacus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus → Rhodococcus opacus	3.67 %
Rhodococcus	genus	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Paraneoptera → Hemiptera → Sternorrhyncha → Coccoidea → Coccidae → Rhodococcus	0.92 %
Tetrasphaera japonica	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Tetrasphaera → Tetrasphaera japonica	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_101734557	Not Available	1376	Open in IMG/M
3300000567\|JGI12270J11330_10260383	Not Available	555	Open in IMG/M
3300001593\|JGI12635J15846_10773470	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus → Rhodococcus opacus	551	Open in IMG/M
3300003505\|JGIcombinedJ51221_10392316	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	564	Open in IMG/M
3300004091\|Ga0062387_100363115	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	961	Open in IMG/M
3300004092\|Ga0062389_103101359	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	622	Open in IMG/M
3300005337\|Ga0070682_101165389	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	648	Open in IMG/M
3300005356\|Ga0070674_100282251	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1317	Open in IMG/M
3300005406\|Ga0070703_10009450	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	2750	Open in IMG/M
3300005434\|Ga0070709_10744434	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	765	Open in IMG/M
3300005434\|Ga0070709_11397516	All Organisms → cellular organisms → Bacteria	566	Open in IMG/M
3300005435\|Ga0070714_101437389	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	673	Open in IMG/M
3300005436\|Ga0070713_100593832	Not Available	1051	Open in IMG/M
3300005437\|Ga0070710_10318413	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1020	Open in IMG/M
3300005437\|Ga0070710_11337902	All Organisms → cellular organisms → Bacteria	534	Open in IMG/M
3300005455\|Ga0070663_100091888	Not Available	2250	Open in IMG/M
3300005564\|Ga0070664_101345231	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	675	Open in IMG/M
3300005598\|Ga0066706_10368896	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1141	Open in IMG/M
3300005610\|Ga0070763_10700907	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	593	Open in IMG/M
3300005617\|Ga0068859_100187683	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	2151	Open in IMG/M
3300006086\|Ga0075019_10879899	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	574	Open in IMG/M
3300006102\|Ga0075015_100744212	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	585	Open in IMG/M
3300006176\|Ga0070765_100616102	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1024	Open in IMG/M
3300006176\|Ga0070765_100679331	Not Available	972	Open in IMG/M
3300006176\|Ga0070765_101185164	All Organisms → cellular organisms → Bacteria	721	Open in IMG/M
3300006176\|Ga0070765_101758209	All Organisms → cellular organisms → Bacteria	582	Open in IMG/M
3300006606\|Ga0074062_10037908	Not Available	1364	Open in IMG/M
3300006854\|Ga0075425_101902152	All Organisms → cellular organisms → Bacteria	667	Open in IMG/M
3300006871\|Ga0075434_102247343	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	549	Open in IMG/M
3300007076\|Ga0075435_100312205	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1345	Open in IMG/M
3300009012\|Ga0066710_104103363	Not Available	544	Open in IMG/M
3300009090\|Ga0099827_11916982	Not Available	516	Open in IMG/M
3300009098\|Ga0105245_12929719	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus → Rhodococcus opacus	529	Open in IMG/M
3300009524\|Ga0116225_1063153	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	1758	Open in IMG/M
3300010371\|Ga0134125_11032255	Not Available	901	Open in IMG/M
3300010396\|Ga0134126_10331042	Not Available	1780	Open in IMG/M
3300010400\|Ga0134122_10868473	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → unclassified Cupriavidus → Cupriavidus sp.	869	Open in IMG/M
3300010401\|Ga0134121_11822962	All Organisms → cellular organisms → Bacteria	636	Open in IMG/M
3300010403\|Ga0134123_10111182	Not Available	2201	Open in IMG/M
3300010861\|Ga0126349_1138326	All Organisms → cellular organisms → Bacteria	746	Open in IMG/M
3300010865\|Ga0126346_1427941	All Organisms → cellular organisms → Bacteria	653	Open in IMG/M
3300010876\|Ga0126361_10007072	Not Available	555	Open in IMG/M
3300010877\|Ga0126356_10204885	All Organisms → cellular organisms → Bacteria	900	Open in IMG/M
3300010880\|Ga0126350_10609827	Not Available	540	Open in IMG/M
3300010880\|Ga0126350_12011002	Not Available	1229	Open in IMG/M
3300011269\|Ga0137392_11131669	All Organisms → cellular organisms → Bacteria	640	Open in IMG/M
3300012201\|Ga0137365_10193350	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1522	Open in IMG/M
3300012357\|Ga0137384_11093551	All Organisms → cellular organisms → Bacteria	639	Open in IMG/M
3300012359\|Ga0137385_10364261	Not Available	1236	Open in IMG/M
3300012917\|Ga0137395_10846993	All Organisms → cellular organisms → Bacteria	662	Open in IMG/M
3300012961\|Ga0164302_11280091	Not Available	591	Open in IMG/M
3300012984\|Ga0164309_10015585	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Paraneoptera → Hemiptera → Sternorrhyncha → Coccoidea → Coccidae → Rhodococcus	3868	Open in IMG/M
3300012985\|Ga0164308_10594815	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → unclassified Cupriavidus → Cupriavidus sp.	940	Open in IMG/M
3300012987\|Ga0164307_10524954	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → unclassified Cupriavidus → Cupriavidus sp.	899	Open in IMG/M
3300012988\|Ga0164306_11067133	All Organisms → cellular organisms → Bacteria	669	Open in IMG/M
3300012989\|Ga0164305_11196734	All Organisms → cellular organisms → Bacteria	658	Open in IMG/M
3300013296\|Ga0157374_10540542	Not Available	1172	Open in IMG/M
3300014157\|Ga0134078_10546037	Not Available	546	Open in IMG/M
3300014969\|Ga0157376_10659039	Not Available	1048	Open in IMG/M
3300015245\|Ga0137409_10972733	Not Available	686	Open in IMG/M
3300015264\|Ga0137403_10719215	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	858	Open in IMG/M
3300015371\|Ga0132258_11681470	Not Available	1601	Open in IMG/M
3300019890\|Ga0193728_1374672	Not Available	501	Open in IMG/M
3300020082\|Ga0206353_10999785	Not Available	1981	Open in IMG/M
3300021088\|Ga0210404_10451848	All Organisms → cellular organisms → Bacteria	723	Open in IMG/M
3300021151\|Ga0179584_1307972	Not Available	508	Open in IMG/M
3300021170\|Ga0210400_10374946	Not Available	1173	Open in IMG/M
3300021178\|Ga0210408_10768789	All Organisms → cellular organisms → Bacteria	756	Open in IMG/M
3300021180\|Ga0210396_11395969	All Organisms → cellular organisms → Bacteria	579	Open in IMG/M
3300021181\|Ga0210388_10120371	Not Available	2262	Open in IMG/M
3300021401\|Ga0210393_10844817	All Organisms → cellular organisms → Bacteria	744	Open in IMG/M
3300021402\|Ga0210385_10940149	All Organisms → cellular organisms → Bacteria	664	Open in IMG/M
3300021407\|Ga0210383_10192069	Not Available	1744	Open in IMG/M
3300021420\|Ga0210394_10918470	All Organisms → cellular organisms → Bacteria	761	Open in IMG/M
3300021474\|Ga0210390_10814744	All Organisms → cellular organisms → Bacteria	772	Open in IMG/M
3300021474\|Ga0210390_11007229	All Organisms → cellular organisms → Bacteria	680	Open in IMG/M
3300021475\|Ga0210392_10223689	Not Available	1323	Open in IMG/M
3300025910\|Ga0207684_11652482	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus → Rhodococcus opacus	517	Open in IMG/M
3300025915\|Ga0207693_11100468	All Organisms → cellular organisms → Bacteria	603	Open in IMG/M
3300025920\|Ga0207649_10147726	Not Available	1615	Open in IMG/M
3300025928\|Ga0207700_10448074	Not Available	1137	Open in IMG/M
3300025929\|Ga0207664_10148710	Not Available	1988	Open in IMG/M
3300025929\|Ga0207664_10448572	Not Available	1151	Open in IMG/M
3300025929\|Ga0207664_11775905	Not Available	539	Open in IMG/M
3300026023\|Ga0207677_11743406	All Organisms → cellular organisms → Bacteria	578	Open in IMG/M
3300026498\|Ga0257156_1138876	Not Available	506	Open in IMG/M
3300026557\|Ga0179587_10128536	Not Available	1562	Open in IMG/M
3300027884\|Ga0209275_10756039	All Organisms → cellular organisms → Bacteria	560	Open in IMG/M
3300027911\|Ga0209698_11172105	Not Available	567	Open in IMG/M
3300028742\|Ga0302220_10171169	All Organisms → cellular organisms → Bacteria	820	Open in IMG/M
3300028811\|Ga0307292_10533347	Not Available	504	Open in IMG/M
3300030057\|Ga0302176_10348611	All Organisms → cellular organisms → Bacteria	596	Open in IMG/M
3300030503\|Ga0311370_11035578	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → unclassified Cupriavidus → Cupriavidus sp.	911	Open in IMG/M
3300030730\|Ga0307482_1202722	All Organisms → cellular organisms → Bacteria	604	Open in IMG/M
3300031090\|Ga0265760_10053837	Not Available	1214	Open in IMG/M
3300031199\|Ga0307495_10041258	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → unclassified Cupriavidus → Cupriavidus sp.	904	Open in IMG/M
3300031525\|Ga0302326_10151330	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Tetrasphaera → Tetrasphaera japonica	3990	Open in IMG/M
3300031590\|Ga0307483_1012610	All Organisms → cellular organisms → Bacteria	761	Open in IMG/M
3300031708\|Ga0310686_100851139	Not Available	882	Open in IMG/M
3300031715\|Ga0307476_10134134	Not Available	1770	Open in IMG/M
3300031720\|Ga0307469_11729241	Not Available	603	Open in IMG/M
3300031754\|Ga0307475_10847766	All Organisms → cellular organisms → Bacteria	723	Open in IMG/M
3300031820\|Ga0307473_10724685	All Organisms → cellular organisms → Bacteria	701	Open in IMG/M
3300031859\|Ga0318527_10351602	All Organisms → cellular organisms → Bacteria	628	Open in IMG/M
3300031962\|Ga0307479_11471084	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus → Rhodococcus opacus	639	Open in IMG/M
3300032205\|Ga0307472_102146515	Not Available	562	Open in IMG/M
3300032896\|Ga0335075_10425153	Not Available	1398	Open in IMG/M
3300034199\|Ga0370514_078262	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → unclassified Cupriavidus → Cupriavidus sp.	839	Open in IMG/M
3300034199\|Ga0370514_098612	All Organisms → cellular organisms → Bacteria	745	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	88.07%
Host-Associated	Host-Associated	11.93%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	83.49%
Plants	Host-Associated → Plants	11.93%
Aquatic	Environmental → Aquatic	4.59%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	79.82%
Rhizosphere	Host-Associated → Plants → Rhizosphere	9.17%
Peat	Environmental → Terrestrial → Peat	3.67%
Sediment	Environmental → Aquatic → Sediment	2.75%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.75%
Freshwater	Environmental → Aquatic → Freshwater	1.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	56.88%
Loam	Environmental → Terrestrial → Soil → Loam	20.18%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.50%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	3.67%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.67%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.75%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.75%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.83%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	33.95%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	20.18%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	12.84%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.34%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.50%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	3.67%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.67%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.75%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.75%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.75%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	12.84%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	10.09%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	9.17%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	8.26%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	7.34%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	5.50%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	5.50%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	4.59%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	3.67%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	3.67%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.75%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.75%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.75%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.83%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.83%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	1.83%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.92%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.92%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.92%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.92%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000567	Peat soil microbial communities from Weissenstadt, Germany - SII-2010	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006606	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009524	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300010861	Boreal forest soil eukaryotic communities from Alaska, USA - C4-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010865	Boreal forest soil eukaryotic communities from Alaska, USA - C3-3 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010876	Boreal forest soil eukaryotic communities from Alaska, USA - W5-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010877	Boreal forest soil eukaryotic communities from Alaska, USA - W3-2 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010880	Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300019890	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c1	Environmental	Open in IMG/M
3300020082	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021151	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_06_16RNAfungal (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026498	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-49-A	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028742	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_3	Environmental	Open in IMG/M
3300028811	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149	Environmental	Open in IMG/M
3300030057	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_1	Environmental	Open in IMG/M
3300030503	III_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030730	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031090	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031199	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 7_S	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031590	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032896	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4	Environmental	Open in IMG/M
3300034199	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_01D_14	Environmental	Open in IMG/M

Geographical Distribution

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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.34
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.34
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F089195

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1017345572	3300000364	Soil	VNGLLASLDAPPSGRARPVWFDAVAYGRARLLGGDDVPWQAPAELTSFFGKTQAMFGSDAIL
JGI12270J11330_102603831	3300000567	Peatlands Soil	MSRLLASLDAPPSGRARSIWFDAVSYGRAKLLGGAGVPWTSPAELSS
JGI12635J15846_107734701	3300001593	Forest Soil	MNQLLTSLDAPPSGRARPVWFDAAAYXRARLLGGGDVPWPAPAELSSFFAKIG
JGIcombinedJ51221_103923162	3300003505	Forest Soil	MSRLPASLAAPPSGRARPTWFDAAAYGRARLLGGGDVPWTSPAELSSFFAKIGGMFRS
Ga0062387_1003631152	3300004091	Bog Forest Soil	VSRLLASLAAPASGRERAIWFDAADYGRAKLLAGAAVPWDSPAELTSFVAKLQGMF
Ga0062389_1031013592	3300004092	Bog Forest Soil	MSRLLTSLDAPPSGRARPVWFDAATYGRARLLGGGDMPWPSPAELSSFFAKIGGMFHSDAILVD
Ga0070682_1011653891	3300005337	Corn Rhizosphere	VNGLLASLDAPPSGRGRPVWFDAVAYGRARLLGGDDMPWQAPAELTSFFGKTQAMFGSDAILA
Ga0070674_1002822511	3300005356	Miscanthus Rhizosphere	VNGLLASLDAPPSGRGRPVWFDAVAYGRARLLGGDDVPWQAPAELTSFFGKTQAMFGSDAILAD
Ga0070703_100094501	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	VNRLLASLDAPPSGRARPVWFDAVAYGRARLLGGGDVPWQAPAELTSFFGK
Ga0070709_107444342	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MSRLLASLDAPPSGRFRPVWFDAAAYGRARLLGGGDLPWQAPA
Ga0070709_113975161	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	VNGLLASLDAPPSGRGRPVWFDAVAYGRARLLGGDDVPWQAP
Ga0070714_1014373892	3300005435	Agricultural Soil	VNRLLASLDAPPSGRARPVWFDAMAYGRARLLGGDDVPWQAPAELTSFFGKTQAMFGSDAILA
Ga0070713_1005938322	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MSRLLASLDAAPSGRFRPVWFDAVAYGRARLLGGGDLPWQAPAELTSFFGKTQAMFGSDAVLADVAD
Ga0070710_103184131	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MSRLLASLDAPPSGRFRPVWFDAVAYGRARLLGGGDLPWQAPAELTSFFGKTQAMFG
Ga0070710_113379021	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MSRVLTSLDAAPSGRARPVWFDAAAYGRARLLGGGDVPWPSPAELSSFFAKIGGMFHSDAILVDLADLFAQR
Ga0070663_1000918882	3300005455	Corn Rhizosphere	VNRLLASLDAPPSGRGRPVWFDAVAYGRARLLGGDDVPWQAPA
Ga0070664_1013452311	3300005564	Corn Rhizosphere	MSRLLASLDAPPSGRIRPVWFDAAAYGRARLLGGGDLPWQAPAELTSFFGKTQAMFGSDA
Ga0066706_103688961	3300005598	Soil	MSRLLASLDAPPSGRFRPVWFDAVAYGRARLLGGGDLPWQ
Ga0070763_107009072	3300005610	Soil	MSNLQASLDRPPSGRQHAIWFEAADYGRARLLAGGAVPWSSPADLTAFV
Ga0068859_1001876832	3300005617	Switchgrass Rhizosphere	VNRLLASLDAPPSGRARPVWFDAVAYGRARLLGGNDVPWQAPAELTSFFGKTQAMFGSDAIL
Ga0075019_108798991	3300006086	Watersheds	VSRLLASLAAPPSGRERAIWFDAADYGRAKLLAGAAVPWDSPAELASF
Ga0075015_1007442121	3300006102	Watersheds	MSRLPASLDAPPSGRARPTWFDAAAYGRARLLGGGDVPWASPAELSSFFAKIGGMF
Ga0070765_1006161021	3300006176	Soil	MSRLLASLDAPPSGRFRPVWFDAAAYGRARLLGGGDLPWQAPAELTSFFGK
Ga0070765_1006793311	3300006176	Soil	VSRLLASLAAPPSGRERAIWFDAVGYGQAKLLADAAV
Ga0070765_1011851641	3300006176	Soil	MSRLLASLDAPPSGRACPTWFDAAAYGRARLLGGGDVPWDSPAELSSFFAK
Ga0070765_1017582091	3300006176	Soil	MSRLLASLGAPPSGRARPIWFDAADYGRARLLAGQ
Ga0074062_100379081	3300006606	Soil	MSRLLTSLDAPPSGRARPVWFDAAAYGRTRLLGGGDVP
Ga0075425_1019021522	3300006854	Populus Rhizosphere	VNRLLASLDAPPSGRARPVWFDAVAYGRARLLGGDDVPWQAPA
Ga0075434_1022473432	3300006871	Populus Rhizosphere	MSRLLASLDAPPSGRFRPVWFDAAAYGRARLLGGGDLPWQAPAEL
Ga0075435_1003122051	3300007076	Populus Rhizosphere	VNRLLASLDAPPSGRARPVWFDAVAYGRARLLGGGDVPWQAPAELTSFFGKTQAMFGSDAILA
Ga0066710_1041033632	3300009012	Grasslands Soil	MSRLLASLDAPPSGRFRPVWFDAAAYGRARLLGGGDLPWQTPA
Ga0099827_119169822	3300009090	Vadose Zone Soil	MSRLLTSLDAPPSGRTRPVWFDAAAYGRARLLGGGDVPWPSPAELSSFFAKIGGMF
Ga0105245_129297192	3300009098	Miscanthus Rhizosphere	MSRLLASLDAPPSGRFRPVWFDAAAYGRARLLGGGDLPWQAPAELTSFFGKTQAMFGSDAILA
Ga0116225_10631531	3300009524	Peatlands Soil	MSRLLASLDAPPSGRARSIWFDAVSYGRAKLLGGAGVPWTSPAELSSFFAKMGGMFRSDAVLVDLAD
Ga0134125_110322551	3300010371	Terrestrial Soil	VSRLLASLDASPSGRARPVWFDAVAYGRARLLGGG
Ga0134126_103310422	3300010396	Terrestrial Soil	MSRLLTSLDAPPSGRARPVWFDAAAYGRARLLGGGDVPWPSPAELS
Ga0134122_108684731	3300010400	Terrestrial Soil	VNRLLASLDAPPSGRARPVWFDAVAYGRARLLGGDDVPWQAPAELTSFFGKTQ
Ga0134121_118229622	3300010401	Terrestrial Soil	VNRLLASLDAPPSGRARPVWFDAVAYGRARLLGGDDVPWQAPAELTSFFGK
Ga0134123_101111822	3300010403	Terrestrial Soil	VNRLLASLDAPPSGRGRPVWFDAVAYGRARLLGGDDVPWQAPAELTSFFGKTQAMFGSDAILAD
Ga0126349_11383261	3300010861	Boreal Forest Soil	MSRLQVSLDAPLSGRGRAIWFDAAGYGRARLLAGGQVPWPSPADLTSFFGKLGGMFRSDAVLV
Ga0126346_14279412	3300010865	Boreal Forest Soil	VSRLLASLDAPPSGRERATWFDAADYGRAKLLGGAAMPWDSPAELASFVAKLQGMFRSDAIL
Ga0126361_100070722	3300010876	Boreal Forest Soil	MSRLLTSLDAPPSGRARPVWFDAATYGRARLLGGGDVPW
Ga0126356_102048851	3300010877	Boreal Forest Soil	VSRLLASLDAPPSGRERATWFDAADYGRAKLLSGAAMPWDSPAELASFVAKLQGMFR
Ga0126350_106098272	3300010880	Boreal Forest Soil	MSSLLASLDRPPSGRQHAIWFDAADYGRDRLLAGRAVPWSSPADLTAFVGKLQGMF
Ga0126350_120110022	3300010880	Boreal Forest Soil	MSRLLASLDAPPSGRARPVWFDATAYGRARLLGGGDVPWRSTAELSSFFAK
Ga0137392_111316692	3300011269	Vadose Zone Soil	VSRLLASLDAPPSGRARPVWFDAAAYGRVRLLGGG
Ga0137365_101933501	3300012201	Vadose Zone Soil	MSRLMASLDAPPSGRERPVWFDAADYGRAKLLAGAVPWSSPAELVAFFGKLQNMFR
Ga0137384_110935511	3300012357	Vadose Zone Soil	MSRLLTSLDAPPSGRARPVWFDAAAYGRARLLGGGDVP
Ga0137385_103642612	3300012359	Vadose Zone Soil	MSRLLTSLDAPPSGRARPVWFDAAAYGRARLLGGGDVPWPSPAELSSFFAKI
Ga0137395_108469931	3300012917	Vadose Zone Soil	MSRLLTSLDAPPSGRARPVWFDAAAYGRSRLLRGGDVPW
Ga0164302_112800911	3300012961	Soil	MSRLLASLDAPPSGRIRPVWFDAAAYGRARLLGGGDLPWQAPAELT
Ga0164309_100155853	3300012984	Soil	VNRLLASLDAPPSGRGRPVWFDAVAYGRARLLGGDDVPWQAPAELTSFFGK
Ga0164308_105948152	3300012985	Soil	MSRVLTSLDAPPSGRARPVWFDAAAYGRARLLGGGDVPWPSPAELSSFFAKIGGMF
Ga0164307_105249541	3300012987	Soil	MSRLLASLDAPPSGRFRPVWFDAAAYGRARLLGGGDLPWQAPAELTSFFGKTQAMFG
Ga0164306_110671332	3300012988	Soil	MSRLLASLDAPPSGRFRPVWFDAVAYGRARLLGGGDLPWQAPA
Ga0164305_111967342	3300012989	Soil	VSRLLASLDAPPSGRIRPVWFDAAAYGRARLLGGGDLPWQAPA
Ga0157374_105405421	3300013296	Miscanthus Rhizosphere	VSRLLASLDAAPSGRARPVWFDAVAYGRARLLGGNDVPWQAPAE
Ga0134078_105460371	3300014157	Grasslands Soil	MSRLLASLDAPPSGRFRPVWFDAAAYGRARLFGGGDLPWQAQAELTSFFGKTQAM
Ga0157376_106590391	3300014969	Miscanthus Rhizosphere	VNRLLASLDAPPSGRARPVWFDAVAYGRARLLGGDDVPWQAPAELTSFF
Ga0137409_109727332	3300015245	Vadose Zone Soil	VSRLQASLDAPPSGRERATWFDAADYGRAKLLGGAAMPWDSPAELASFVAKLQ
Ga0137403_107192152	3300015264	Vadose Zone Soil	MSRLLASLGAPPSGRARPIWFDAADYGRVRLLAGQEVPWHSPAELTAFFGKT*
Ga0132258_116814702	3300015371	Arabidopsis Rhizosphere	MSRLLASLDAPPSGRARPIWFDAAAYGRARLLGGADLPWQAPAELTSFFGKTQ
Ga0193728_13746721	3300019890	Soil	MSRLLASLDAPPSGRARPVWFDAVAYGRARLLGGGDLPWQAPAELTSFFGKTQAMFGSDA
Ga0206353_109997852	3300020082	Corn, Switchgrass And Miscanthus Rhizosphere	VNRLLASLDAPPSGRARPVWFDAVAYGRARLLGGGDV
Ga0210404_104518482	3300021088	Soil	MSRLLASLGAPPSGRAGPAWFDAAAYGRAKLLGGGDVPW
Ga0179584_13079722	3300021151	Vadose Zone Soil	VNRLLASLDAPPSGRERATWFDAADYGRAKLLGGAAMPWDSPAELASFVAKL
Ga0210400_103749462	3300021170	Soil	VSRLLASLDAPPSGRASPAWFDAAAYGRAKLLGGGDVPWDSPAELSSFFAKIGGMFRSDAILVDVAD
Ga0210408_107687891	3300021178	Soil	MSRLPASLDAPPSGRARPTWFDAAAYGRARLLGGGDVPWTSPAELSSFFAKIGGMFRSDA
Ga0210396_113959691	3300021180	Soil	MSRLPASLAAPPSGRARPTWFDAAAYGRARLLGGGDVPWTSPAELSSFFAKIGGMFRSDAILVDL
Ga0210388_101203711	3300021181	Soil	MSRLPASLAAPPSGRARPTWFDAAAYGRARLLGGGDVPWTSPAELSSFFA
Ga0210393_108448171	3300021401	Soil	MSRLLTSLDAPPSERARPVWFDAAAYGRARLLGGGDVPWSSPAELSSFFTKIG
Ga0210385_109401492	3300021402	Soil	VSRLLASLDAPPSGRERATWFDAADYGRAKLLAGAALPWDSPAELAAFV
Ga0210383_101920691	3300021407	Soil	MSRLPASLDAPPSGRARPTWFDAAAYGRARLLGSGDVPWT
Ga0210394_109184702	3300021420	Soil	MSRLLTSLDAPPSGRARPVWFDAAAYGRARLLGGGDVPWPSPAELSSFFAKIGGMFHSDA
Ga0210390_108147441	3300021474	Soil	MSRLLASLAAPPSGRACPTWFDAAAYGRAKLLGGGD
Ga0210390_110072292	3300021474	Soil	VSGLLASPSGRARPIWFDAAAYGRAKLLGGADVPWDSPAELSSFFAKIGGMFGSDAILVDVADIFAQRAATDQQLRAAMA
Ga0210392_102236892	3300021475	Soil	MSSLLASLDAPPSGRARPVWFDAAAYGRARLLGGGDVPWPSPAELSSFFAKIGAMFRSDA
Ga0207684_116524822	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MSRLPASLDAPPSGRARAVWFDAAAYGRARLIGGGDVPWSSPAELSSFFAKL
Ga0207693_111004681	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MSRLQASLDAPPSGRVRPIWFDAAAYGRARLIGGSDLPWQAPAELTSFFGKTQAM
Ga0207649_101477262	3300025920	Corn Rhizosphere	VNGLLASLDAPPSGRGRPVWFDAVAYGRARLLGGDDVPWQAPAELTSFFGKTQAMFGS
Ga0207700_104480741	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MSRLLASLDAPPSGRIRPVWFDAAAYGRARLLGGGDLPWQAPAELTSFFG
Ga0207664_101487101	3300025929	Agricultural Soil	MSRLLASLDAPPSGRFRPVWFDAVAYGRARLLGGGDLPWQAPAELTSFFGKT
Ga0207664_104485722	3300025929	Agricultural Soil	MSRLLASLDAPPSGRIRPVWFDAAAYGRARLLGGGDLPWQAPAELTSFFGKTQAMFGSDAILAD
Ga0207664_117759052	3300025929	Agricultural Soil	VNRLLASLDAPPSGRARPVWFDAMAYGRARLLGGDDVPWQAPAELTSFFGKTQAMFGSD
Ga0207677_117434061	3300026023	Miscanthus Rhizosphere	VSRLLASLDAPPSGRARPVWFDAVAYGRARLLGGGDV
Ga0257156_11388762	3300026498	Soil	MSRLLASLDAPPSGRIRPVWFDAAAYGRARLLGGGDL
Ga0179587_101285361	3300026557	Vadose Zone Soil	MSRLLASLDAPPSGRIRPVWFDAAAYGRARLLGGGDLPWQAPAELTSFFGKTQAMFGSD
Ga0209275_107560392	3300027884	Soil	MTSLLASLDAPPSGRERAVWFDAADYGRAKLLAGAAVPWDSPAELASFVAKQQGMFRSDA
Ga0209698_111721052	3300027911	Watersheds	MSRLPASLDAPPSGRARPTWFDAAAYGRARLLGGGDVPWTSPAELSSFFTKIGGMFRSDAVLVDLADL
Ga0302220_101711691	3300028742	Palsa	MNGLLASLDAPPSGRARPVWFDAATYGRARLLSGGDVPWPSPAELSSFFAKIGGMFH
Ga0307292_105333472	3300028811	Soil	VSRLLASLDAPPSGRARPVWFDAVAYGRARLLGGDDVPWQ
Ga0302176_103486112	3300030057	Palsa	MNGLLASLDAPPSGRARPVWFDAATYGRARLLSGGDVPWPSPAE
Ga0311370_110355782	3300030503	Palsa	VSRLLASLAAPPSGRERAIWFDAADYGRAKLLAGAA
Ga0307482_12027222	3300030730	Hardwood Forest Soil	VSGLLASASGRACPIWFDAAAYGRAKLLGGADVPWDSPAELSSFFAKIGGMFGSDAILVDVGDMFA
Ga0265760_100538371	3300031090	Soil	MSRLLASLDAPPSGRACPTWFDAAAYGRAKLLGGGDVPWNSPAEL
Ga0307495_100412582	3300031199	Soil	MSRVLTSLDAPPSGRARPVWFDAAAYGRARLLGGGDVPWPSPAELSSFFAKIG
Ga0302326_101513301	3300031525	Palsa	VSRLLASLAAPPSGRERAIWFDAADYGRAKLLAGAAVPWD
Ga0307483_10126102	3300031590	Hardwood Forest Soil	MSRLLASLVAPPSGRACPTWFDAAAYGRARLLGGGDVPWDSPAELSSFFAKIGGMFRSDAILVDLADLLAQRAAADQ
Ga0310686_1008511392	3300031708	Soil	VSRLLASLDAPPSGRERAVWFDAGEYGRAKLLGGAV
Ga0307476_101341342	3300031715	Hardwood Forest Soil	MSGLLASLDTPPSGRACPAWFDAAAYGRAKLLGGGDVPWDSPAELSSFFAKIGGMFRSDAILVDVADMFAQRAAADQQL
Ga0307469_117292411	3300031720	Hardwood Forest Soil	MSRVLTSLDAPPSGRARPVWFDAAAYGRARLLGRGDVPWPSPAEL
Ga0307475_108477662	3300031754	Hardwood Forest Soil	MSRLLASLDVPPSGRARPAWFDAAAYGRAKLLGGADVPWDSPAELSSFFAKI
Ga0307473_107246851	3300031820	Hardwood Forest Soil	VSRLLASLDASPSGRARPVWFDAVAYGRARLLGGGDVPWQA
Ga0318527_103516022	3300031859	Soil	MSRLLASLDAPPSGRERAIWFDAADYGWAKLLADGTVPW
Ga0307479_114710842	3300031962	Hardwood Forest Soil	VSRLLASLDAPPSGRARPVWFDAATYGRARLLGGGDVPWPSPAELSSFFAKIGGMFHSDAILVDLAD
Ga0307472_1021465152	3300032205	Hardwood Forest Soil	MSRLLASLDAPPSGRIRPVWFDAAAYGRARLLGGCDLPWQAPAELTSFFG
Ga0335075_104251531	3300032896	Soil	MSRLLASLDAPPSGRQRPIWFDAADYGRAKLLAGGAVPWKSPAELTAFFGKLQGMFR
Ga0370514_078262_671_838	3300034199	Untreated Peat Soil	MNGLLASLDAPPSGRARPVWFDAATYGRARLLSGGDVPWPSPAELSSFFAKIGGMF
Ga0370514_098612_521_745	3300034199	Untreated Peat Soil	MSRLLASLDAPPSGRARPVWFDAATYGQARLLGGGDVPWPSPAELSSFFAKIGGMFHSDAILVDLADVFAQRAAA

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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