Metagenome / Metatranscriptome Family F089197

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F089197
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	43 residues
Representative Sequence	SPPKLHKLEPGWEIAEWFCVLDENKDYDQVVRKPAGVAPASK
Number of Associated Samples	82
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.92 %
% of genes near scaffold ends (potentially truncated)	99.08 %
% of genes from short scaffolds (< 2000 bps)	90.83 %
Associated GOLD sequencing projects	76
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.17

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (67.890 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (17.431 % of family members)
Environment Ontology (ENVO)	Unclassified (26.606 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (49.541 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 5.71% β-sheet: 0.00% Coil/Unstructured: 94.29%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.17
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.17
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF04444	Dioxygenase_N	14.81
PF10518	TAT_signal	2.78
PF13442	Cytochrome_CBB3	1.85
PF01717	Meth_synt_2	1.85
PF01425	Amidase	1.85
PF07883	Cupin_2	0.93
PF04365	BrnT_toxin	0.93
PF13620	CarboxypepD_reg	0.93
PF00155	Aminotran_1_2	0.93
PF00034	Cytochrom_C	0.93
PF09822	ABC_transp_aux	0.93
PF00753	Lactamase_B	0.93
PF12441	CopG_antitoxin	0.93
PF00561	Abhydrolase_1	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG3485	Protocatechuate 3,4-dioxygenase beta subunit	Secondary metabolites biosynthesis, transport and catabolism [Q]	14.81
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	1.85
COG0620	Methionine synthase II (cobalamin-independent)	Amino acid transport and metabolism [E]	1.85
COG2929	Ribonuclease BrnT, toxin component of the BrnT-BrnA toxin-antitoxin system	Defense mechanisms [V]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	67.89 %
Unclassified	root	N/A	32.11 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	67.89 %
Unclassified	root	N/A	32.11 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	67.89 %
Unclassified	root	N/A	32.11 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	36.70 %
Unclassified	root	N/A	32.11 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	9.17 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	3.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.11 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	7.34 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3.67 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	1.83 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.11 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3.67 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.83 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.83 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.11 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	3.67 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.83 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.83 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.11 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	3.67 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.83 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.83 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.11 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	3.67 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.83 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.83 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001661\|JGI12053J15887_10389542	All Organisms → cellular organisms → Bacteria	670	Open in IMG/M
3300004631\|Ga0058899_11935848	All Organisms → cellular organisms → Bacteria → Acidobacteria	782	Open in IMG/M
3300005435\|Ga0070714_101787142	All Organisms → cellular organisms → Bacteria	600	Open in IMG/M
3300005538\|Ga0070731_10519074	Not Available	793	Open in IMG/M
3300005541\|Ga0070733_10720726	Not Available	670	Open in IMG/M
3300005921\|Ga0070766_10247261	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1130	Open in IMG/M
3300006050\|Ga0075028_100005415	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	4965	Open in IMG/M
3300006050\|Ga0075028_100094309	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1517	Open in IMG/M
3300006052\|Ga0075029_100602846	All Organisms → cellular organisms → Bacteria → Acidobacteria	734	Open in IMG/M
3300006059\|Ga0075017_100110534	All Organisms → cellular organisms → Bacteria	1923	Open in IMG/M
3300006086\|Ga0075019_10951356	Not Available	553	Open in IMG/M
3300006102\|Ga0075015_100310948	Not Available	869	Open in IMG/M
3300006162\|Ga0075030_100252825	All Organisms → cellular organisms → Bacteria → Acidobacteria	1413	Open in IMG/M
3300006176\|Ga0070765_100534353	All Organisms → cellular organisms → Bacteria → Acidobacteria	1103	Open in IMG/M
3300006176\|Ga0070765_101347922	All Organisms → cellular organisms → Bacteria → Acidobacteria	673	Open in IMG/M
3300006176\|Ga0070765_101811729	Not Available	572	Open in IMG/M
3300006354\|Ga0075021_10889296	All Organisms → cellular organisms → Bacteria	578	Open in IMG/M
3300006806\|Ga0079220_10591169	All Organisms → cellular organisms → Bacteria	786	Open in IMG/M
3300007258\|Ga0099793_10357435	All Organisms → cellular organisms → Bacteria → Acidobacteria	714	Open in IMG/M
3300009177\|Ga0105248_12538162	All Organisms → cellular organisms → Bacteria	584	Open in IMG/M
3300009177\|Ga0105248_12794950	Not Available	557	Open in IMG/M
3300009521\|Ga0116222_1178440	All Organisms → cellular organisms → Bacteria → Acidobacteria	914	Open in IMG/M
3300009521\|Ga0116222_1235000	Not Available	790	Open in IMG/M
3300010048\|Ga0126373_13256091	Not Available	505	Open in IMG/M
3300010361\|Ga0126378_12044766	All Organisms → cellular organisms → Bacteria → Acidobacteria	653	Open in IMG/M
3300010379\|Ga0136449_100041408	All Organisms → cellular organisms → Bacteria	10682	Open in IMG/M
3300010379\|Ga0136449_100099170	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5995	Open in IMG/M
3300010379\|Ga0136449_100428954	All Organisms → cellular organisms → Bacteria	2331	Open in IMG/M
3300010379\|Ga0136449_100955238	All Organisms → cellular organisms → Bacteria → Acidobacteria	1387	Open in IMG/M
3300010379\|Ga0136449_101732546	All Organisms → cellular organisms → Bacteria → Acidobacteria	939	Open in IMG/M
3300010397\|Ga0134124_11546971	All Organisms → cellular organisms → Bacteria → Acidobacteria	692	Open in IMG/M
3300011120\|Ga0150983_15506622	Not Available	668	Open in IMG/M
3300011270\|Ga0137391_10177813	All Organisms → cellular organisms → Bacteria → Acidobacteria	1854	Open in IMG/M
3300011271\|Ga0137393_11250031	Not Available	630	Open in IMG/M
3300012199\|Ga0137383_10809149	Not Available	684	Open in IMG/M
3300012205\|Ga0137362_10186324	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1784	Open in IMG/M
3300012211\|Ga0137377_11270648	Not Available	666	Open in IMG/M
3300012361\|Ga0137360_11445551	Not Available	591	Open in IMG/M
3300012362\|Ga0137361_10647588	All Organisms → cellular organisms → Bacteria	967	Open in IMG/M
3300012363\|Ga0137390_10403081	All Organisms → cellular organisms → Bacteria → Acidobacteria	1346	Open in IMG/M
3300012363\|Ga0137390_10973094	All Organisms → cellular organisms → Bacteria → Acidobacteria	801	Open in IMG/M
3300012582\|Ga0137358_11007173	Not Available	538	Open in IMG/M
3300012927\|Ga0137416_10659311	All Organisms → cellular organisms → Bacteria	916	Open in IMG/M
3300012944\|Ga0137410_10814620	All Organisms → cellular organisms → Bacteria → Acidobacteria	785	Open in IMG/M
3300012944\|Ga0137410_11634771	All Organisms → cellular organisms → Bacteria → Acidobacteria	565	Open in IMG/M
3300012971\|Ga0126369_12343049	Not Available	620	Open in IMG/M
3300015052\|Ga0137411_1018947	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1711	Open in IMG/M
3300015242\|Ga0137412_10016127	All Organisms → cellular organisms → Bacteria	6052	Open in IMG/M
3300015245\|Ga0137409_10351072	All Organisms → cellular organisms → Bacteria → Acidobacteria	1286	Open in IMG/M
3300017823\|Ga0187818_10148340	All Organisms → cellular organisms → Bacteria	1020	Open in IMG/M
3300017823\|Ga0187818_10220780	All Organisms → cellular organisms → Bacteria → Acidobacteria	827	Open in IMG/M
3300017823\|Ga0187818_10538674	Not Available	526	Open in IMG/M
3300017926\|Ga0187807_1033364	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1595	Open in IMG/M
3300017926\|Ga0187807_1284993	Not Available	546	Open in IMG/M
3300017927\|Ga0187824_10152574	All Organisms → cellular organisms → Bacteria	767	Open in IMG/M
3300017927\|Ga0187824_10197112	Not Available	683	Open in IMG/M
3300017927\|Ga0187824_10206624	Not Available	669	Open in IMG/M
3300017928\|Ga0187806_1371642	Not Available	513	Open in IMG/M
3300017942\|Ga0187808_10022132	All Organisms → cellular organisms → Bacteria → Acidobacteria	2579	Open in IMG/M
3300017942\|Ga0187808_10124502	All Organisms → cellular organisms → Bacteria → Acidobacteria	1128	Open in IMG/M
3300017943\|Ga0187819_10245194	All Organisms → cellular organisms → Bacteria → Acidobacteria	1049	Open in IMG/M
3300017955\|Ga0187817_10518363	All Organisms → cellular organisms → Bacteria → Acidobacteria	761	Open in IMG/M
3300017993\|Ga0187823_10220121	All Organisms → cellular organisms → Bacteria → Acidobacteria	631	Open in IMG/M
3300017995\|Ga0187816_10099123	All Organisms → cellular organisms → Bacteria → Acidobacteria	1250	Open in IMG/M
3300018006\|Ga0187804_10396403	Not Available	611	Open in IMG/M
3300018006\|Ga0187804_10413064	Not Available	599	Open in IMG/M
3300018007\|Ga0187805_10643905	Not Available	502	Open in IMG/M
3300020579\|Ga0210407_10406358	All Organisms → cellular organisms → Bacteria → Acidobacteria	1065	Open in IMG/M
3300020579\|Ga0210407_10471838	All Organisms → cellular organisms → Bacteria	981	Open in IMG/M
3300020579\|Ga0210407_11069640	Not Available	613	Open in IMG/M
3300020580\|Ga0210403_10711277	Not Available	804	Open in IMG/M
3300021170\|Ga0210400_10959992	All Organisms → cellular organisms → Bacteria	696	Open in IMG/M
3300021180\|Ga0210396_10261181	All Organisms → cellular organisms → Bacteria → Acidobacteria	1538	Open in IMG/M
3300021402\|Ga0210385_11417593	All Organisms → cellular organisms → Bacteria → Acidobacteria	531	Open in IMG/M
3300021406\|Ga0210386_10885145	All Organisms → cellular organisms → Bacteria → Acidobacteria	765	Open in IMG/M
3300021420\|Ga0210394_10309403	All Organisms → cellular organisms → Bacteria	1387	Open in IMG/M
3300021478\|Ga0210402_10369240	All Organisms → cellular organisms → Bacteria → Acidobacteria	1332	Open in IMG/M
3300021478\|Ga0210402_11227220	Not Available	677	Open in IMG/M
3300021478\|Ga0210402_11239967	Not Available	673	Open in IMG/M
3300021479\|Ga0210410_10141677	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2140	Open in IMG/M
3300021560\|Ga0126371_10404730	Not Available	1507	Open in IMG/M
3300025634\|Ga0208589_1126060	Not Available	593	Open in IMG/M
3300025927\|Ga0207687_10121411	All Organisms → cellular organisms → Bacteria → Acidobacteria	1955	Open in IMG/M
3300026355\|Ga0257149_1016656	All Organisms → cellular organisms → Bacteria	986	Open in IMG/M
3300026376\|Ga0257167_1014491	Not Available	1086	Open in IMG/M
3300026557\|Ga0179587_10765285	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	636	Open in IMG/M
3300027326\|Ga0209731_1048838	Not Available	638	Open in IMG/M
3300027662\|Ga0208565_1042083	All Organisms → cellular organisms → Bacteria → Acidobacteria	1499	Open in IMG/M
3300027663\|Ga0208990_1022224	All Organisms → cellular organisms → Bacteria → Acidobacteria	2059	Open in IMG/M
3300027681\|Ga0208991_1037585	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1464	Open in IMG/M
3300027826\|Ga0209060_10528632	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	535	Open in IMG/M
3300027842\|Ga0209580_10478348	All Organisms → cellular organisms → Bacteria → Acidobacteria	620	Open in IMG/M
3300027869\|Ga0209579_10354016	Not Available	794	Open in IMG/M
3300027889\|Ga0209380_10459966	All Organisms → cellular organisms → Bacteria → Acidobacteria	744	Open in IMG/M
3300027894\|Ga0209068_10128508	All Organisms → cellular organisms → Bacteria	1357	Open in IMG/M
3300027895\|Ga0209624_10433445	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	876	Open in IMG/M
3300027903\|Ga0209488_10138277	All Organisms → cellular organisms → Bacteria	1838	Open in IMG/M
3300027905\|Ga0209415_10456398	All Organisms → cellular organisms → Bacteria	1003	Open in IMG/M
3300027905\|Ga0209415_10516731	All Organisms → cellular organisms → Bacteria → Acidobacteria	914	Open in IMG/M
3300027905\|Ga0209415_10585098	All Organisms → cellular organisms → Bacteria → Acidobacteria	832	Open in IMG/M
3300031128\|Ga0170823_16294023	Not Available	773	Open in IMG/M
3300031708\|Ga0310686_108376485	All Organisms → cellular organisms → Bacteria → Acidobacteria	620	Open in IMG/M
3300031753\|Ga0307477_10681455	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	689	Open in IMG/M
3300031753\|Ga0307477_10899061	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	584	Open in IMG/M
3300031754\|Ga0307475_11412859	Not Available	536	Open in IMG/M
3300031962\|Ga0307479_12128280	Not Available	508	Open in IMG/M
3300032160\|Ga0311301_10072853	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	7205	Open in IMG/M
3300032160\|Ga0311301_10072853	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	7205	Open in IMG/M
3300032160\|Ga0311301_12173168	All Organisms → cellular organisms → Bacteria → Acidobacteria	638	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.25%
Host-Associated	Host-Associated	2.75%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	72.48%
Aquatic	Environmental → Aquatic	24.77%
Plants	Host-Associated → Plants	2.75%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	72.48%
Freshwater	Environmental → Aquatic → Freshwater	16.51%
Sediment	Environmental → Aquatic → Sediment	8.26%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.75%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	60.55%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	16.51%
Loam	Environmental → Terrestrial → Soil → Loam	11.93%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	8.26%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.75%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	40.37%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	18.35%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	16.51%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	11.01%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	8.26%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.75%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.92%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.92%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	17.43%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	16.51%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	13.76%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	12.84%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	8.26%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	6.42%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	4.59%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	4.59%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.67%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.67%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.92%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.92%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.92%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300004631	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF234 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009521	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300015052	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017926	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_2	Environmental	Open in IMG/M
3300017927	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_4	Environmental	Open in IMG/M
3300017928	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1	Environmental	Open in IMG/M
3300017942	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017993	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_3	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025634	Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-2 shallow-092012 (SPAdes)	Environmental	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026355	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-02-A	Environmental	Open in IMG/M
3300026376	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-02-B	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027326	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027662	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG (SPAdes)	Environmental	Open in IMG/M
3300027663	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027681	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M2 (SPAdes)	Environmental	Open in IMG/M
3300027826	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12053J15887_103895422	3300001661	Forest Soil	LEPTWEIAEWFCVIDEDEAYDEVVRKPAGVAPSPK*
Ga0058899_119358482	3300004631	Forest Soil	PKLHKLEPSWEFGEWFCVVDETKTYDDVVRKPAGDAPPSHK*
Ga0070714_1017871421	3300005435	Agricultural Soil	KPWVSPPKLHKLEPGWEIAEWFCVLDENKDYDNVVRKPAGVAPASK*
Ga0070731_105190742	3300005538	Surface Soil	EPGWELAEWFCVLDENHDYDQVVRKPAGVAPEQGK*
Ga0070733_107207261	3300005541	Surface Soil	KLHKLEPGWEIAEWFCVLDEDKTYDDAVRKPAGIAPAK*
Ga0070766_102472612	3300005921	Soil	SPPKLHKLEPTWEFGEWFCIVDESEDYDKSVRKPAGNTSPSQK*
Ga0075028_1000054156	3300006050	Watersheds	KLHKLEPGWEIAEWFCVLDEHEAYDDAVRKPAGVAPATAK*
Ga0075028_1000943093	3300006050	Watersheds	LEPTWEIAEWFCVIEEENAYSDVIRKPAGGISTDPK*
Ga0075029_1006028461	3300006052	Watersheds	VWVSPPKLHKLEPKWEIAEWFCASSEIQTYDKDVRKPSGGATTEPK*
Ga0075017_1001105341	3300006059	Watersheds	YTKVWVSPPKLHKLEPKWEIAEWFCASSELQTYDKDVRKPSGGVSTAPNQ*
Ga0075019_109513561	3300006086	Watersheds	SPPKLHKLEPGWEIAEWFCVLDENKDYDQVVRKPAGVAPASK*
Ga0075015_1003109481	3300006102	Watersheds	PPQKFKLEPNWEIAEFFCIVDEENNYGDAVRKPAGVAPK*
Ga0075030_1002528251	3300006162	Watersheds	AKWVSPPKLHKLEPKWEIGEWFCAASENLVYDKDVRKPSGGITEPAK*
Ga0070765_1005343532	3300006176	Soil	EPGWEIAEWFCVLDEDKAYDNAVRKPAGVAPAPK*
Ga0070765_1013479222	3300006176	Soil	HKLEPSWEFGEWFCVVDETKTYDDVVRKPAGGAPPTPK*
Ga0070765_1018117292	3300006176	Soil	YTKEWVSPPKRHKLEPTWEIAEWFCASSELQTYDKDVRKPSGGAPSVPGK*
Ga0075021_108892961	3300006354	Watersheds	KLEPGWEIAEWFCVLDENKGYDQTVRKPAGVAPSSK*
Ga0079220_105911691	3300006806	Agricultural Soil	PPKLHKLEPTWEIAEWFCATSEEQTYDEQVRKPSGAAPQPK*
Ga0099793_103574352	3300007258	Vadose Zone Soil	KTWVNPPKLHKLEPMWEIAEWFCVIDDENAYGDAVRKPAGVSPTPK*
Ga0105248_125381621	3300009177	Switchgrass Rhizosphere	PWVSPPKMHKLEPGWELAEWFCVLDENKDYDQVVRKPAGVAPNSK*
Ga0105248_127949501	3300009177	Switchgrass Rhizosphere	KLHKLEPGWQIAEWFCVPDEDNAYDEVVRKPAGVAPGHK*
Ga0116222_11784402	3300009521	Peatlands Soil	RHKLEPGWEIAEWFCAVEEDKAYDEVVRKPAGVAPKK*
Ga0116222_12350001	3300009521	Peatlands Soil	KLHKLEPGWEIAEWFCVLDENKDYDQVVRKPAGVAPASK*
Ga0126373_132560911	3300010048	Tropical Forest Soil	TKPWVSPPKLHKLEPGWEIAEWFCVVDEDNAYDNAVRKPAGVAPAHK*
Ga0126378_120447661	3300010361	Tropical Forest Soil	YKLEPGWEIAEWFCIPDEDKSYDDSVRKPAGVAPAPK*
Ga0136449_1000414081	3300010379	Peatlands Soil	LHKLEPGWELSEWFCVQDEHNAYDESVRKPAGVAPTRK*
Ga0136449_1000991707	3300010379	Peatlands Soil	KLEPGWEIAEWFCVLDENKDYDQVVRKPAGVAPASK*
Ga0136449_1004289543	3300010379	Peatlands Soil	RFKLEPSWEIAEFFCVVDEENSYGDAVRKPAGVVPAPK*
Ga0136449_1009552383	3300010379	Peatlands Soil	AYTKPWVSPPKLHKLEPGWEIAEWFCVLDEDKAYDDAVRKPAGVAPSK*
Ga0136449_1017325461	3300010379	Peatlands Soil	SPPKLHKLEQGWEIAEWFCVLDEDKAYDDVVRKPAGVAPAPNK*
Ga0134124_115469711	3300010397	Terrestrial Soil	KPWVSPPKLHKLEPGWELAEWFCILDENKDYDQVVRKPAGVAPNSK*
Ga0150983_155066221	3300011120	Forest Soil	KLHKLEPNWEIAEWFCVIEEENAYSDTIRKPAGGISTAPK*
Ga0137391_101778132	3300011270	Vadose Zone Soil	MKIEEVKETKEKTWACPPKLHKVEPGWEIAEWFCFLDENRDYDQVVRKPAGVAPESK*
Ga0137393_112500311	3300011271	Vadose Zone Soil	EPTWEIAQWFCVIEEENTYSDTIRKPAGGFSTTPK*
Ga0137383_108091491	3300012199	Vadose Zone Soil	KLHKLEPTWELAEWFCVPDEHNAYDDVVRKPAGVSPSPK*
Ga0137362_101863241	3300012205	Vadose Zone Soil	PKLHKLEPTWEIAEWFCVIDEDKAYDEVVRKPAGVAPSPR*
Ga0137377_112706482	3300012211	Vadose Zone Soil	TWVNPPKLHKLEPMWEIAEWFCVIDDENAYGDAVRKPAGVSPTPK*
Ga0137360_114455511	3300012361	Vadose Zone Soil	TKPWVSPPKLHKLEPTWELAEWFCVQGEHNAYDEVVRKPAGVSPTPK*
Ga0137361_106475882	3300012362	Vadose Zone Soil	SYTKVWVSPPKLHKLEPTWEIAEWFCATSEEQAYDEQVRKPSGVAPPSK*
Ga0137390_104030812	3300012363	Vadose Zone Soil	WVSPPKLHKLEPKWEIAEWFCAASELQTYDKDVRKPSGGGTIAPKQ*
Ga0137390_109730941	3300012363	Vadose Zone Soil	PKLHKLEPGWELAEWFCVQDEHNAYDESVRKPAGASPAKK*
Ga0137358_110071731	3300012582	Vadose Zone Soil	KTWVNPPKLHKLEPMWEIAEWFCVIDDENAYGDAVRKPAGVSATPK*
Ga0137416_106593111	3300012927	Vadose Zone Soil	KVWVSPPKLHKLEPTWEIAEWFCAISEEQAYDEQVRKPSGVAASPGK*
Ga0137410_108146202	3300012944	Vadose Zone Soil	SYTKVWVSPPKLHKLEPAWEIAEWFCVLDEDKAYDEVVRKPAGVSPSPK*
Ga0137410_116347712	3300012944	Vadose Zone Soil	PKLHKLEPMWEIAEWFCVIDDENAYGDAVRKPAGVSPTPK*
Ga0126369_123430491	3300012971	Tropical Forest Soil	KPWVNPPKLHKLEPGWEIAEWFCVIDEENAYSEAVRKPAGGAPK*
Ga0137411_10189471	3300015052	Vadose Zone Soil	KLEPAWEIAEWFCVMEEENAYSDAIRKPAGGISTVPK*
Ga0137412_100161275	3300015242	Vadose Zone Soil	PKLHKLDTMWEIAEWFCVIDHENAYGDAVRKPAGISPTPK*
Ga0137409_103510721	3300015245	Vadose Zone Soil	PKSYTKVWVSPPKLHKLEPAWEIAEWFCVLDEDKAYDEVVRKPAGVSPSPK*
Ga0187818_101483401	3300017823	Freshwater Sediment	PWVSPPKLHKLEPGWEIAEWFCVLDENKDYDQVVRKPAGVAPASK
Ga0187818_102207801	3300017823	Freshwater Sediment	TKTWVSPPKLHKLEPTWEIAEWFCVLDEDKAYDDVVRKPAGVAPTLNK
Ga0187818_105386742	3300017823	Freshwater Sediment	KAYTKTWVSPPKLHKLEPTWEIAEWFCVLDEDKAYDDVVRKPAGGAPASNK
Ga0187807_10333643	3300017926	Freshwater Sediment	VNPPKLHKLEPTWEIAEWFCVIEEENAYGDAIRKPAGGISTAPK
Ga0187807_12849931	3300017926	Freshwater Sediment	SPPKLHKLEPTWEIAEWFCVLDEDKAYDDVVRKPAGGAPASNK
Ga0187824_101525741	3300017927	Freshwater Sediment	PPRLHKLEPTWEIAEWFCVIEEENAYSDVVRKPAGGISTAPK
Ga0187824_101971121	3300017927	Freshwater Sediment	KLHKLEPGWEIAEWFCVLDENKDYDQVVRKPAGVAPASK
Ga0187824_102066241	3300017927	Freshwater Sediment	PKLHKLEPGWEIAEWFCVLDEDKAYDDAVRKPAGVAPTSKK
Ga0187806_13716421	3300017928	Freshwater Sediment	TKPWVSPPKLHKLEPGWEIAEWFCVLDENKDYDQVVRKPAGVAPASK
Ga0187808_100221321	3300017942	Freshwater Sediment	KLEPTWEIAEWFCVLDEDKAYDDVVRKPAGGAPASNK
Ga0187808_101245021	3300017942	Freshwater Sediment	LHKLEPGWEIAEWFCVNDEDKSYDETVRKPAGVTPAYNK
Ga0187819_102451942	3300017943	Freshwater Sediment	VSPPKLHKLEPTWEIAEWFCVLDEDKAYDDVVRKPAGGAPMPTK
Ga0187817_105183632	3300017955	Freshwater Sediment	YTKTWVSPPKLHKLEPTWEIAEWFCVLDEDKAYDDVVRKPAGGAPASNK
Ga0187823_102201212	3300017993	Freshwater Sediment	SYTKVWVSPPKLHKLEPGWEIAEWFCVNDEDKSYDETVRKPAGVAPAYNK
Ga0187816_100991231	3300017995	Freshwater Sediment	LHKLEPAWEIAEWFCVLDEDKAYDEVVRKPAGLAPAANK
Ga0187804_103964032	3300018006	Freshwater Sediment	AYTKTWVSPPKLHKLEPAWEIAEWFCVLDEDKAYDEVVRKPAGLAPAANK
Ga0187804_104130642	3300018006	Freshwater Sediment	WVSPPKLHKLEPTWEIAEWFCVLDEDKAYDDVVRKPAGGAPASNK
Ga0187805_106439052	3300018007	Freshwater Sediment	PPKLHKLEPTWEIAEWFCVLDEDKAYDDVVRKPAGVAPAPEK
Ga0210407_104063582	3300020579	Soil	VSPPKLHKLEPGWELAEWFCVQDEHNAYDQSVRKPAGASPTKK
Ga0210407_104718381	3300020579	Soil	RPWVGPPKLHKLEPGWEIAEWFCVLDENKDYDQVVRKPAGVVPASK
Ga0210407_110696401	3300020579	Soil	KVWVSPPKLHKLEPKWEIAEWFCASSELQTYDKDVRKPSGGSTDPKK
Ga0210403_107112771	3300020580	Soil	PKLHKLEPGWEIAEWFCVLDENKDYDQVVRKPAGVAPAPK
Ga0210400_109599922	3300021170	Soil	KLHKLEPGWEIAEWFCVLEEDKAYDEVVRKPAGIAPTTK
Ga0210396_102611813	3300021180	Soil	ISPPKLHKLEPGWEIAEWFCVPDEDNAYDDAVRKPAGVAPKSR
Ga0210385_114175931	3300021402	Soil	AYTKTWVSPPKLHKLESSWEFGEWFCVVEETKTYDDVVRKPAGDAPPMRK
Ga0210386_108851452	3300021406	Soil	TEKWVSPPKLHKLEPKWEIGEWFCAASENQVYDKDVRKPSGGITEPTK
Ga0210394_103094031	3300021420	Soil	TWVSPPKLHKLEPGWEIAEWFCVLDEDQAYDDVVRKPAGVAPATKK
Ga0210402_103692402	3300021478	Soil	VWTSPPKLYKHEPGWEIAEWFCIADEDKSYDNTVRKPAGVAPASK
Ga0210402_112272202	3300021478	Soil	NPPKLHKLEPKWEIAEWFCVIEEENAYSDAIRKPAGGISTAPK
Ga0210402_112399672	3300021478	Soil	HKLEPTWELAEWPCVIEETKDYDETVRKPAGDASPARVQ
Ga0210410_101416771	3300021479	Soil	SYTKVWVSPPKLHKLEPKWEIAEWFCASSELQTYDKDVRKPSGGNVTEPKK
Ga0126371_104047303	3300021560	Tropical Forest Soil	EPGWEIAEWFCVIDEEKAYSEAVRKPAGIAPATKP
Ga0208589_11260602	3300025634	Arctic Peat Soil	PPKLHKLEPKWEIGEWFCAASENQVYDKDVRKPSGAVDEPAK
Ga0207687_101214114	3300025927	Miscanthus Rhizosphere	LEPGWQIAEWFCVPDEDNAYDEVVRKPAGVAPGHK
Ga0257149_10166562	3300026355	Soil	SPPKLHKLEPTWEIAEWFCVIDEDKAYDEVVRKPAGVAPSPR
Ga0257167_10144911	3300026376	Soil	KLHKLEPTWEIAEWFCVIDEDKAYDEVVRKPAGVAPSPR
Ga0179587_107652852	3300026557	Vadose Zone Soil	KLHKLEPGWEIAEWFCILDEDNAYDQVVRKPAGVAPKSK
Ga0209731_10488381	3300027326	Forest Soil	NPPKLHKLEPGWEIAEWFCVIDEENAYSEAIRKPAGIAPEKK
Ga0208565_10420831	3300027662	Peatlands Soil	VWVSPPKLHKLEPKWEIAEWFCASSELQTYDKDVRKPSGGGTTAPSK
Ga0208990_10222241	3300027663	Forest Soil	PKLHKLEPMWEIAEWFCVIDDENAYGDAVRKPAGVSPTPK
Ga0208991_10375852	3300027681	Forest Soil	KLHKLEPTWEIAEWFCVIDEDKAYDEVVRKPAGVAPSPK
Ga0209060_105286321	3300027826	Surface Soil	KFKLEPNWEIAEFFCIVDEENTYGDAVRKPAGVAPKK
Ga0209580_104783481	3300027842	Surface Soil	KLHKLEPGWELAEWFCVQDEHNAYDDAVRKPAGVSAPPK
Ga0209579_103540162	3300027869	Surface Soil	LEPGWELAEWFCVLDENHDYDQVVRKPAGVAPEQGK
Ga0209380_104599662	3300027889	Soil	LHKLEPGWEIAEWFCVLDEDKAYDEAVRKPAGVAPTPNK
Ga0209068_101285082	3300027894	Watersheds	PWVSPPKLHKLEPGWEIAEWFCVLDENQGYDQVVRKPAGVAPASK
Ga0209624_104334451	3300027895	Forest Soil	VSPPKLHKLKPTWEFGEWFCIADETEGYDQSVRKPAGGDSPLH
Ga0209488_101382773	3300027903	Vadose Zone Soil	WVSPPKLHKLEPTWEIAEWFCATSEEQTYDEQVRKPSGVAPGPDK
Ga0209415_104563981	3300027905	Peatlands Soil	WVSPPKLHKLEPGWELAEWFCVLDENKDYDQVVRKPAGVAPASK
Ga0209415_105167312	3300027905	Peatlands Soil	IWVNPPKLHKLEPMWEIAEWFCVIEEENAYSDAIRKPAGGISIAPK
Ga0209415_105850982	3300027905	Peatlands Soil	TKPWVSPPKLHKLEPGWELSEWFCVQDEHNAYDESVRKPAGVAPTRK
Ga0170823_162940232	3300031128	Forest Soil	MYTKPWVSPPKLHKLEPGWELAEWFCVLDENHDYDQVVRKPAGVAPASGK
Ga0310686_1083764851	3300031708	Soil	KAYSKPWVSPPKLHKLEPGWELSEWFCVQDEHNAYDESVRKPAGVSPARK
Ga0307477_106814552	3300031753	Hardwood Forest Soil	TKLWVSPPKLHKLEPTWEIAEWFCIVDEEHAYSDTVRIPAGTPPAGRK
Ga0307477_108990611	3300031753	Hardwood Forest Soil	PPKLHKLEPGWEIAEWFCVIDEENAYSEAIRKPAGIAPEKK
Ga0307475_114128592	3300031754	Hardwood Forest Soil	TKPWVSPPKLHKLEPGWEIAEWFCVLDENKDYDQTVRKPAGVAPALK
Ga0307479_121282801	3300031962	Hardwood Forest Soil	NPPKLHKLEPTWEIAEWFCVIEEENTYSDAVRKPAGGISTAPK
Ga0311301_100728531	3300032160	Peatlands Soil	SPTKLHKLEPGWEIAEWFCVLDEDKAYDDAVRKPAGVAPSK
Ga0311301_1007285311	3300032160	Peatlands Soil	TKPWVSPPKLHRLEPGWEIAEWFCVLDENKDYDQVVRKPAGVAPASK
Ga0311301_121731681	3300032160	Peatlands Soil	TKPWVSPPKLHKLEPGWEIAEWFCAVEEDKAYDEVVRKPAGVAPKK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F089197

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences