Metagenome / Metatranscriptome Family F089212

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F089212
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	44 residues
Representative Sequence	MDLLAAKVWTYWISFFIIIPVVLLVIGIGIAYLVKVVSLKYPKQ
Number of Associated Samples	69
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	31.19 %
% of genes near scaffold ends (potentially truncated)	10.09 %
% of genes from short scaffolds (< 2000 bps)	88.07 %
Associated GOLD sequencing projects	67
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.55

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (73.394 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil (40.367 % of family members)
Environment Ontology (ENVO)	Unclassified (54.128 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (59.633 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 54.17% β-sheet: 0.00% Coil/Unstructured: 45.83%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.55
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.55
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF10103	Zincin_2	37.61
PF13490	zf-HC2	20.18
PF08281	Sigma70_r4_2	4.59
PF00072	Response_reg	0.92
PF01987	AIM24	0.92
PF01243	Putative_PNPOx	0.92
PF00156	Pribosyltran	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG2013	AIM24 protein, required for mitochondrial respiration	Energy production and conversion [C]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	73.39 %
Unclassified	root	N/A	26.61 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	73.39 %
Unclassified	root	N/A	26.61 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	73.39 %
Unclassified	root	N/A	26.61 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	73.39 %
Unclassified	root	N/A	26.61 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	73.39 %
Unclassified	root	N/A	26.61 %

Name	Rank	Taxonomy	Distribution
Acidimicrobiia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	30.28 %
Unclassified	root	N/A	26.61 %

Name	Rank	Taxonomy	Distribution
Acidimicrobiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	30.28 %
Unclassified	root	N/A	26.61 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.61 %
Acidimicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae	20.18 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.61 %
Acidithrix	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Acidithrix	12.84 %
Aciditerrimonas	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Aciditerrimonas	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.61 %
Acidithrix ferrooxidans	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Acidithrix → Acidithrix ferrooxidans	12.84 %
Aciditerrimonas ferrireducens	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Aciditerrimonas → Aciditerrimonas ferrireducens	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005363\|Ga0008090_14553824	Not Available	765	Open in IMG/M
3300005537\|Ga0070730_10012482	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6894	Open in IMG/M
3300006059\|Ga0075017_101001197	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	651	Open in IMG/M
3300006162\|Ga0075030_101508745	Not Available	526	Open in IMG/M
3300006176\|Ga0070765_100113469	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Acidithrix → Acidithrix ferrooxidans	2365	Open in IMG/M
3300006797\|Ga0066659_11759424	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	524	Open in IMG/M
3300006893\|Ga0073928_10186858	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1635	Open in IMG/M
3300006893\|Ga0073928_10767528	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	668	Open in IMG/M
3300009038\|Ga0099829_10040931	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae	3374	Open in IMG/M
3300009089\|Ga0099828_10259618	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae	1559	Open in IMG/M
3300009089\|Ga0099828_10989411	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	750	Open in IMG/M
3300009400\|Ga0116854_1094967	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Acidithrix → Acidithrix ferrooxidans	1567	Open in IMG/M
3300010152\|Ga0126318_10328219	Not Available	541	Open in IMG/M
3300010376\|Ga0126381_104258527	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	554	Open in IMG/M
3300010855\|Ga0126355_1058080	Not Available	1230	Open in IMG/M
3300010856\|Ga0126358_1072654	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	843	Open in IMG/M
3300010856\|Ga0126358_1218785	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Acidithrix → Acidithrix ferrooxidans	528	Open in IMG/M
3300010857\|Ga0126354_1016607	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1575	Open in IMG/M
3300010857\|Ga0126354_1137500	Not Available	1125	Open in IMG/M
3300010857\|Ga0126354_1209018	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2122	Open in IMG/M
3300010857\|Ga0126354_1235066	Not Available	517	Open in IMG/M
3300010859\|Ga0126352_1005937	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	580	Open in IMG/M
3300010859\|Ga0126352_1241288	Not Available	963	Open in IMG/M
3300010860\|Ga0126351_1001100	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	963	Open in IMG/M
3300010860\|Ga0126351_1013054	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1820	Open in IMG/M
3300010860\|Ga0126351_1042201	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	748	Open in IMG/M
3300010860\|Ga0126351_1047215	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	843	Open in IMG/M
3300010860\|Ga0126351_1064071	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	608	Open in IMG/M
3300010860\|Ga0126351_1064575	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	713	Open in IMG/M
3300010860\|Ga0126351_1258980	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	530	Open in IMG/M
3300010861\|Ga0126349_1016709	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1430	Open in IMG/M
3300010861\|Ga0126349_1037664	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	504	Open in IMG/M
3300010861\|Ga0126349_1164640	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	529	Open in IMG/M
3300010862\|Ga0126348_1000213	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1577	Open in IMG/M
3300010862\|Ga0126348_1064489	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1319	Open in IMG/M
3300010862\|Ga0126348_1099774	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	861	Open in IMG/M
3300010862\|Ga0126348_1133956	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1819	Open in IMG/M
3300010862\|Ga0126348_1171404	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1249	Open in IMG/M
3300010862\|Ga0126348_1209510	Not Available	744	Open in IMG/M
3300010862\|Ga0126348_1216300	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1189	Open in IMG/M
3300010862\|Ga0126348_1243279	Not Available	511	Open in IMG/M
3300010862\|Ga0126348_1290201	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	831	Open in IMG/M
3300010864\|Ga0126357_1297786	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1186	Open in IMG/M
3300010865\|Ga0126346_1035045	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Acidithrix → Acidithrix ferrooxidans	876	Open in IMG/M
3300010865\|Ga0126346_1203095	Not Available	696	Open in IMG/M
3300010865\|Ga0126346_1238074	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	771	Open in IMG/M
3300010865\|Ga0126346_1298730	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	826	Open in IMG/M
3300010865\|Ga0126346_1303523	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1220	Open in IMG/M
3300010865\|Ga0126346_1394980	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Acidithrix → Acidithrix ferrooxidans	934	Open in IMG/M
3300010867\|Ga0126347_1201213	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	764	Open in IMG/M
3300010867\|Ga0126347_1469467	Not Available	653	Open in IMG/M
3300010869\|Ga0126359_1099162	Not Available	886	Open in IMG/M
3300010876\|Ga0126361_10857610	Not Available	520	Open in IMG/M
3300010880\|Ga0126350_11450191	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Acidithrix → Acidithrix ferrooxidans	704	Open in IMG/M
3300011120\|Ga0150983_11657953	Not Available	582	Open in IMG/M
3300011269\|Ga0137392_11435290	Not Available	549	Open in IMG/M
3300012132\|Ga0153978_1020886	Not Available	1205	Open in IMG/M
3300012206\|Ga0137380_11476816	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	564	Open in IMG/M
3300012212\|Ga0150985_121805534	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae	2189	Open in IMG/M
3300012379\|Ga0134058_1209474	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Acidithrix → Acidithrix ferrooxidans	530	Open in IMG/M
3300015164\|Ga0167652_1009667	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2123	Open in IMG/M
3300015190\|Ga0167651_1000285	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	15250	Open in IMG/M
3300015190\|Ga0167651_1004775	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3149	Open in IMG/M
3300020069\|Ga0197907_10635205	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	523	Open in IMG/M
3300021307\|Ga0179585_1066797	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Acidithrix → Acidithrix ferrooxidans	592	Open in IMG/M
3300021444\|Ga0213878_10487502	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	541	Open in IMG/M
3300021855\|Ga0213854_1145372	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Acidithrix → Acidithrix ferrooxidans	839	Open in IMG/M
3300021855\|Ga0213854_1379818	Not Available	922	Open in IMG/M
3300021858\|Ga0213852_1475095	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Acidithrix → Acidithrix ferrooxidans	1100	Open in IMG/M
3300021860\|Ga0213851_1181447	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae	829	Open in IMG/M
3300021860\|Ga0213851_1577695	Not Available	531	Open in IMG/M
3300022506\|Ga0242648_1016961	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	894	Open in IMG/M
3300022530\|Ga0242658_1117200	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	655	Open in IMG/M
3300022532\|Ga0242655_10172908	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	646	Open in IMG/M
3300022532\|Ga0242655_10326990	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	506	Open in IMG/M
3300022533\|Ga0242662_10295540	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Acidithrix → Acidithrix ferrooxidans	539	Open in IMG/M
3300022712\|Ga0242653_1037903	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	747	Open in IMG/M
3300022718\|Ga0242675_1039401	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	753	Open in IMG/M
3300022724\|Ga0242665_10095911	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	873	Open in IMG/M
3300022726\|Ga0242654_10039443	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Aciditerrimonas → Aciditerrimonas ferrireducens	1282	Open in IMG/M
3300022726\|Ga0242654_10154216	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae	769	Open in IMG/M
3300022726\|Ga0242654_10424325	Not Available	514	Open in IMG/M
3300024220\|Ga0224568_1041320	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Acidithrix → Acidithrix ferrooxidans	503	Open in IMG/M
3300027846\|Ga0209180_10042996	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae	2474	Open in IMG/M
3300028906\|Ga0308309_10498137	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	1053	Open in IMG/M
3300030520\|Ga0311372_11946040	Not Available	692	Open in IMG/M
3300030730\|Ga0307482_1149436	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	680	Open in IMG/M
3300030730\|Ga0307482_1284690	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	528	Open in IMG/M
3300030975\|Ga0099845_1000002	Not Available	544	Open in IMG/M
3300030975\|Ga0099845_1002559	Not Available	1058	Open in IMG/M
3300030975\|Ga0099845_1539772	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	684	Open in IMG/M
3300030975\|Ga0099845_1591880	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	686	Open in IMG/M
3300031234\|Ga0302325_12077411	Not Available	697	Open in IMG/M
3300031469\|Ga0170819_14163302	Not Available	503	Open in IMG/M
3300031543\|Ga0318516_10011807	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae	4244	Open in IMG/M
3300031544\|Ga0318534_10551266	Not Available	657	Open in IMG/M
3300031708\|Ga0310686_103480305	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	22625	Open in IMG/M
3300031713\|Ga0318496_10524286	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	655	Open in IMG/M
3300031747\|Ga0318502_10064353	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1963	Open in IMG/M
3300031765\|Ga0318554_10821828	Not Available	519	Open in IMG/M
3300031781\|Ga0318547_10298883	Not Available	978	Open in IMG/M
3300031793\|Ga0318548_10620962	Not Available	525	Open in IMG/M
3300031896\|Ga0318551_10808759	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	545	Open in IMG/M
3300031912\|Ga0306921_10484119	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1440	Open in IMG/M
3300031962\|Ga0307479_10029201	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	5253	Open in IMG/M
3300032065\|Ga0318513_10326856	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	746	Open in IMG/M
3300032180\|Ga0307471_100291932	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Acidithrix → Acidithrix ferrooxidans	1712	Open in IMG/M
3300032515\|Ga0348332_10485650	Not Available	716	Open in IMG/M
3300032515\|Ga0348332_11507890	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Acidithrix → Acidithrix ferrooxidans	2140	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.17%
Host-Associated	Host-Associated	1.83%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	88.99%
Aquatic	Environmental → Aquatic	9.17%
Plants	Host-Associated → Plants	0.92%
Fungi	Host-Associated → Fungi	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	84.40%
Freshwater	Environmental → Aquatic → Freshwater	5.50%
Plant Litter	Environmental → Terrestrial → Plant Litter	2.75%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.83%
Sediment	Environmental → Aquatic → Sediment	1.83%
Peat	Environmental → Terrestrial → Peat	1.83%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.92%
Mycelium	Host-Associated → Fungi → Mycelium	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	81.65%
Sediment	Environmental → Aquatic → Freshwater → Sediment	4.59%
Loam	Environmental → Terrestrial → Soil → Loam	2.75%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	2.75%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	1.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.83%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.83%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.92%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	55.96%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	23.85%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	4.59%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.75%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	2.75%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	1.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.83%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.83%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.92%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.92%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.92%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	40.37%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	18.35%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.42%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	4.59%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.67%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	2.75%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	1.83%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.83%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.83%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	1.83%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	1.83%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.92%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.92%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	0.92%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.92%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.92%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.92%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.92%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.92%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.92%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	0.92%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009400	Soil microbial community of the Robinson Ridge, Antarctica. Combined Assembly of Gp0139162, Gp0138857, Gp0138858	Environmental	Open in IMG/M
3300010152	Soil microbial communities from Oklahoma, USA to study soil gas exchange rates - GP-OK-ARM metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010855	Boreal forest soil eukaryotic communities from Alaska, USA - W1-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010856	Boreal forest soil eukaryotic communities from Alaska, USA - W4-2 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010857	Boreal forest soil eukaryotic communities from Alaska, USA - W1-3 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010859	Boreal forest soil eukaryotic communities from Alaska, USA - C5-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010860	Boreal forest soil eukaryotic communities from Alaska, USA - C5-2 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010861	Boreal forest soil eukaryotic communities from Alaska, USA - C4-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010862	Boreal forest soil eukaryotic communities from Alaska, USA - C4-4 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010864	Boreal forest soil eukaryotic communities from Alaska, USA - W3-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010865	Boreal forest soil eukaryotic communities from Alaska, USA - C3-3 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010867	Boreal forest soil eukaryotic communities from Alaska, USA - C3-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010869	Boreal forest soil eukaryotic communities from Alaska, USA - W4-4 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010876	Boreal forest soil eukaryotic communities from Alaska, USA - W5-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010880	Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300012132	Attine ant fungus gardens microbial communities from Georgia, USA - TSGA062 MetaG	Host-Associated	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012379	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_4_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300015164	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-4b, rock/ice/stream interface)	Environmental	Open in IMG/M
3300015190	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-4a, rock/ice/stream interface)	Environmental	Open in IMG/M
3300020069	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300021307	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_06_16RNAfungal (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021444	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R02	Environmental	Open in IMG/M
3300021855	Metatranscriptome of freshwater sediment microbial communities from pre-fracked creek in Pennsylvania, United States - G-2016_18 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021858	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2015 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021860	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2014 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022506	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-26-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022530	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022532	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022533	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022712	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-32-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022718	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022724	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024220	Spruce litter microbial communities from Bohemian Forest, Czech Republic ? CLU5	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300030520	III_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030730	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030975	Forest soil eukaryotic communities from Alaska, USA, for a soil warming experiment in a boreal forest - Alaskan Soil AK pilot (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0008090_145538242	3300005363	Tropical Rainforest Soil	MDLLAAKVWTYWLSIFIIVPIVLLVIGIGIAYLVKVVSLKYPRQ*
Ga0070730_100124828	3300005537	Surface Soil	MGTLATVWTYWISFFIVIPVVLLVLGVGIAYLVKVVSLKYPKQ*
Ga0075017_1010011972	3300006059	Watersheds	VCGYSRPMDLVAAKVWTYWISFFILIPVILLVVGLGIAYLVKVVSLKYPKQ*
Ga0075030_1015087452	3300006162	Watersheds	MDLIAAKVWTYWISFFIIVPVVLIVIGIGIAYLVKVVSLKYPKQ*
Ga0070765_1001134692	3300006176	Soil	VATIIDMRILAGEVWTYWISFFVLIGVVLLVVGIGVLYLVKVVSLKYPKQ*
Ga0066659_117594242	3300006797	Soil	MPPRLGYDRLMALLAAKVWTYWISFFLVIPAVLIVLALGVLYLVKVVSTKYPRQ*
Ga0073928_101868582	3300006893	Iron-Sulfur Acid Spring	MRMIAGEVWTYWISFFIVAPVVLLCIGIGIAYLVKVVSLKYPKQ*
Ga0073928_107675282	3300006893	Iron-Sulfur Acid Spring	MDVIAAKVWTYWISWFIIIPVVLLVIGIGIAYLVKVVSLKYPKQ*
Ga0099829_100409315	3300009038	Vadose Zone Soil	MDLLAAKVWTYWISYFIIIPVFLLVVGIGVAYLVKVVSLKYPKQ*
Ga0099828_102596184	3300009089	Vadose Zone Soil	MDLLAAKVWTYWISYFIIIPVFLLVVGIGVAYLVKVVSLKYPKP*
Ga0099828_109894113	3300009089	Vadose Zone Soil	MDLLAAKVWTYWISYFLVIPIVLLVLGIGVAYLVKVVSLKYPKQ*
Ga0116854_10949672	3300009400	Soil	MRILAAEVWTYWISFFIVVATVMLCLGIGIAYLVKVVSLKYPKQ*
Ga0126318_103282191	3300010152	Soil	MDLIAAKVWTYWISFFIIIPVVLIVIAIGIAYLVKVVSLKYPKQ*
Ga0126381_1042585272	3300010376	Tropical Forest Soil	MDLLGATVWTYWISWFIFIPVILVVVGIGIAYLVKVVSLKYPKQ*
Ga0126355_10580802	3300010855	Boreal Forest Soil	MDLIAAKVWTYWISWFIIIPVVLLVIGIGIAYLVKVVSLKYPKQ*
Ga0126358_10726542	3300010856	Boreal Forest Soil	MHLFAAVVWDYWISWFIIIPVVLLVIGIGILYLVKVVSLKYPKH*
Ga0126358_12187852	3300010856	Boreal Forest Soil	MDLLAAKVWTYWISFFIIVPVVLLVIGIGIAYLVKVVSLKYPKQ*
Ga0126354_10166072	3300010857	Boreal Forest Soil	MGILAAKVWTYWISFFIIVPVVLLVIGIGIAYLVKVVSLKYPKQ*
Ga0126354_11375002	3300010857	Boreal Forest Soil	MDLVAAKVWTYWISFFIIVPVILLVIGLGIAYLVKVVSLKYPKQ*
Ga0126354_12090183	3300010857	Boreal Forest Soil	MALLAAKVWTYWISWFIVIPVILLVIGVGIAYLVKVVSLKHPKQ*
Ga0126354_12350661	3300010857	Boreal Forest Soil	MHLLAATVWTYWISWFIIIPVVLLVIGVGVLYLKKVVSLKYPKH*
Ga0126352_10059372	3300010859	Boreal Forest Soil	MDLIAAKVWTYWISFFIIIPVVLIVIGIGIAYLIKVVSLKYPKQ*
Ga0126352_12412881	3300010859	Boreal Forest Soil	MLVAGEVWTYWISFFLIVPVVLLVIGIGVAYLVKVVSLKYPKQ*
Ga0126351_10011002	3300010860	Boreal Forest Soil	MPVLAAVVWDYWISWFIIIPVILLVIGIGILYLVKVVSLKYPKQ*
Ga0126351_10130542	3300010860	Boreal Forest Soil	MPILAAKVWTYWISFFIIVPVILLVIGLGIAYLVKVVSLKYPKQ*
Ga0126351_10422012	3300010860	Boreal Forest Soil	MDVIAAKVWTYWISFFIIIPVVLLVIGIGIAYLVKVVSLKYPKQ*
Ga0126351_10472152	3300010860	Boreal Forest Soil	MHLLAAKVWTYWISIFIIVPVVLLVIGLGVAYLVKVVSLKYPKQ*
Ga0126351_10640712	3300010860	Boreal Forest Soil	MPVLAAPVWDYWISWFLIIPIVLLVIGIGILYLVKVVSLKYPKQR*
Ga0126351_10645752	3300010860	Boreal Forest Soil	MDVLAAKVWTYWISWFIVVPVVLLVIGLGILYLKKVVSLKYPKQ*
Ga0126351_12589801	3300010860	Boreal Forest Soil	MHLLAAPVWDYWISWFLIIPIVLLVIGIGILYVVKVVSLKYPKQ*
Ga0126349_10167091	3300010861	Boreal Forest Soil	MPILAAKVWTYWISFFIIVPVVLGVIGLGIAYLVKVVSLKYPKQ*
Ga0126349_10376641	3300010861	Boreal Forest Soil	MDLIAAKVWTYWISFFIIVPTVLVVIGIGIAYLIKVVSLKYPKQ*
Ga0126349_11646402	3300010861	Boreal Forest Soil	MHLLAATVWTYWISWFIIIPVVLLVIGVGILYLVKVVSLKYPKQ*
Ga0126348_10002132	3300010862	Boreal Forest Soil	MPILAAKVWTYWISFFVIVPVILLVIGLGIAYLVKVVSLKYPKQ*
Ga0126348_10644892	3300010862	Boreal Forest Soil	MHVLAAPVWTYWISWFIIIPVVLLVIGVGILYLVKVVSLKYPKQ*
Ga0126348_10997742	3300010862	Boreal Forest Soil	MRLLAAVVWTYWISWFIIVPVALLVVGVGILYLVKVISLKYPKQ*
Ga0126348_11339562	3300010862	Boreal Forest Soil	MHVFAAVVWDYWISWFIIIPVVLLVIGIGILYLVKVVSLKYPKH*
Ga0126348_11714042	3300010862	Boreal Forest Soil	MQLLAAAVWDYWLSWFLIIPIVLLVIGIGILYLVKVVSLKYPKHQ*
Ga0126348_12095101	3300010862	Boreal Forest Soil	LLAAKVWTYWISWFIFIPVVLLVIVVGILYLVKVVSLKYPKQ*
Ga0126348_12163002	3300010862	Boreal Forest Soil	MGVLAAKVWTYWISWFIIVPVVLLVVGLGILYLVKVVSLKYPKQ*
Ga0126348_12432791	3300010862	Boreal Forest Soil	MELLAAKVWTYWISFFIVVPVFLLVIGLVIAYLVKVVSLKYPKQ*
Ga0126348_12902012	3300010862	Boreal Forest Soil	MHVLAAKVWTYWISWFIIVPVVLLVVGLGILYLVKVVSLKYPKQ*
Ga0126357_12977862	3300010864	Boreal Forest Soil	MDLFAADKVWTYWISFFIIVPTVLIVIGIGIAYLVKVVSLKYPKQ*
Ga0126346_10350453	3300010865	Boreal Forest Soil	MDLVAAKVWTYWISYFIFIPVVLLVVGLGIAYLVKVVSLKYPKQ*
Ga0126346_12030952	3300010865	Boreal Forest Soil	MLVAGEVWTYWISFFVLFPVILLCLAMGVAYLVKVVSLKHPKQ*
Ga0126346_12380742	3300010865	Boreal Forest Soil	MRIFAAEVWTYWIGFFILVPVILMCIGVGIAYLVKVVSLKYPKQ*
Ga0126346_12987302	3300010865	Boreal Forest Soil	MDLIAAKVWTYWISFFIIVPTVLLVIGIGIAYLIKVVSLKYPKQ*
Ga0126346_13035232	3300010865	Boreal Forest Soil	MDLIAAKVWTYWISWFLIIPVILLVIGIGIAYLVKVVSLKYPKQ*
Ga0126346_13949804	3300010865	Boreal Forest Soil	MDLSAADKVWTYWISFFLIVPTVLTVIGIGIAYLVKVVSLKYPKQ*
Ga0126347_12012133	3300010867	Boreal Forest Soil	MDLIAAKVWTYWISFFIIVPVILLVIGIGIAYLVKVVSLKYPKQ*
Ga0126347_14694672	3300010867	Boreal Forest Soil	VWTYWISFFLIVPVVLLVIGIGIAYLVKVVSLKYPKQ*
Ga0126359_10991621	3300010869	Boreal Forest Soil	MDLLAAKVWTYWISFFLVVPIALLILGLGIAYLVKVVSLKYPKQ*
Ga0126361_108576101	3300010876	Boreal Forest Soil	MDLFAAKVWTYWISFFIIVPVILLVIGIGIAYLVKVVSLKYPKQ*
Ga0126350_114501913	3300010880	Boreal Forest Soil	MDLIAAKVWTYWISFFIIVPTVLLVIGIGIAYLIKVV
Ga0150983_116579531	3300011120	Forest Soil	MGLLAAKVWTYWISFFIIIPVVLLVIGIGIAYLVKVVSLKYPKQ*
Ga0137392_114352902	3300011269	Vadose Zone Soil	MDLLAAKVWTYWISYFIVIPVFLLVVGIGVAYLVKVVSLKYPKQ*
Ga0153978_10208862	3300012132	Attine Ant Fungus Gardens	MALLAAKVWTYWISFFLVIPAVLIVIGIGVLYLVKVVSTKYRH*
Ga0137380_114768162	3300012206	Vadose Zone Soil	MDLLAAKVWTYWISYFIVIPVFLLVVGIGVAYLVKVVSLKYPK
Ga0150985_1218055342	3300012212	Avena Fatua Rhizosphere	MDLLAAKVWTYWISFFIIIPVVLLVIGIGIAYLVKVVSLKYPKQ*
Ga0134058_12094742	3300012379	Grasslands Soil	MRILAAEVWTYWISFFVVVATVMLCLGIGIAYLVKVVSLKYPKQ*
Ga0167652_10096671	3300015164	Glacier Forefield Soil	MPIHLLAAKVWTYWISFFIIIGTIGLVVGIAVLYLVKVVSLKYPRR*
Ga0167651_10002857	3300015190	Glacier Forefield Soil	MRILAAEVWTYWISFFIVVPVVLLCLGIGIAYLVKVVSLKYPKQ*
Ga0167651_10047751	3300015190	Glacier Forefield Soil	ALFAAAKVWTFWISFFIIVPTVLLVLGIGVAYLKKVVSLKYPKQ*
Ga0197907_106352052	3300020069	Corn, Switchgrass And Miscanthus Rhizosphere	MDLLAAKVWTYWISFFIIVPVVLLVIGIGIAYLVKVVSLKYPKQ
Ga0179585_10667972	3300021307	Vadose Zone Soil	MGWLLAAKVWTYWISFFIVIPVVLLVIGIGIAYLIKVVSLKYPKQ
Ga0213878_104875021	3300021444	Bulk Soil	MQIVAAEVWTYWISFFIIIPVVLLCLGIGILYLVKVFSLKYPKQ
Ga0213854_11453723	3300021855	Watersheds	MDLVAAKVWTYWISFFILIPVILLVVGLGIAYLVKVVSLKYPKQ
Ga0213854_13798183	3300021855	Watersheds	MDLIAAKVWTYWISFFIIVPVVLLVIGIGIAYLVKVVSLKYPKQ
Ga0213852_14750952	3300021858	Watersheds	MDLVAAKVWTYWISFFIIIPVILLVVGLGIAYLVKVVSLKYPKQ
Ga0213851_11814472	3300021860	Watersheds	MDLLAAKVWTYWISFFIIVPVVLIVIGIGIAYLVKVVSLKYPKQ
Ga0213851_15776952	3300021860	Watersheds	PGPVGGQGWVCGYSRPMDLVAAKVWTYWISFFILIPVILLVVGLGIAYLVKVVSLKYPKQ
Ga0242648_10169612	3300022506	Soil	MDVLAAKVWTYWISFFIIIPVVLLVIGIGIAYLIKVVSLKYPRQ
Ga0242658_11172002	3300022530	Soil	MDLIAGQVWTFWISWFLIIPVILIVIGIGIAYLVKVVSLKYPKQ
Ga0242655_101729082	3300022532	Soil	MDLIAAKVWTYWISFFIIIPVVLIVIGIGIAYLVKVVSLKYPKQ
Ga0242655_103269902	3300022532	Soil	MPILAAKVWTYWISFFIIVPVILLVIGLGIAYLVKVVSLKYPKQ
Ga0242662_102955402	3300022533	Soil	MGTLATVWTYWISFFIIIPVILLAVGLGIAYLVKVVSLKYPKQ
Ga0242653_10379032	3300022712	Soil	MGLLAAKVWTYWISFFIIIPVVLIVIGIGIAYLIKVVSLKYPKQ
Ga0242675_10394012	3300022718	Soil	MGLLAAKVWTYWISFFIIIPVVLIVIGIGIAYLVKVVSLKYPKQ
Ga0242665_100959112	3300022724	Soil	VRVPSNAMALLAASKVWTYWISWFIVIPVVLLIVGLGALYLKKVVSLKHPKQ
Ga0242654_100394431	3300022726	Soil	MPVLAAVVWDYWISWFIIIPVVLLVIGIGILYLVKVVSLKYPKQ
Ga0242654_101542161	3300022726	Soil	MPILAAKVWTYWISFFIIIPVILLVVGLGIAYLVKVVSLKYPKQ
Ga0242654_104243251	3300022726	Soil	MDRVVATVWTYWISWFLIIPVVLLVIGIGIAYIAKVVSLKYPKQ
Ga0224568_10413202	3300024220	Plant Litter	VATIIDMRILAGEVWTYWISFFVLIGVVLLVLGIGVLYVVKVVSLKYPKQ
Ga0209180_100429963	3300027846	Vadose Zone Soil	MDLLAAKVWTYWISYFIIIPVFLLVVGIGVAYLVKVVSLKYPKQ
Ga0308309_104981373	3300028906	Soil	VATIIDMRILAGEVWTYWISFFVLIGVVLLVVGIGVLYLVKVVSLKYPKQ
Ga0311372_119460402	3300030520	Palsa	MLAAGEVWTYWISFFILVPVILLVLGIGIAYLVKVVSLKYPKQ
Ga0307482_11494362	3300030730	Hardwood Forest Soil	MDLFAAKVWTYWISFFIIIPVILLVVGLGIAYLIKVVSLKYPKQ
Ga0307482_12846902	3300030730	Hardwood Forest Soil	MDLIAAKVWTYWISFFIIVPVILLVIGIGIAYLVKVVSLKYPKQ
Ga0099845_10000022	3300030975	Boreal Forest Soil	MPILAAKVWTYWISFFIIVPVVLGVIGLGIAYLVKVVSLKYPKQ
Ga0099845_10025591	3300030975	Boreal Forest Soil	MDVLAAKVWTYWISWFIVVPVVLLVIGLGILYLKKVVSLKYPKQ
Ga0099845_15397722	3300030975	Boreal Forest Soil	MALFAAKVWTYWISWFIVIPVILLVIGVGIAYLVKVVSLKHPKQ
Ga0099845_15918803	3300030975	Boreal Forest Soil	MGILAAKVWTYWISFFLIVPVVLLVIGIGIAYLVKVVSLKYPKQ
Ga0302325_120774111	3300031234	Palsa	MLVAGEVWTYWISFFLLVPVVLVVIGIGIAYLVKVVSLKYPKQ
Ga0170819_141633021	3300031469	Forest Soil	MLAAEVWTYWISFFIVIPVILLCLGIGVAYVVKVISLKYPKQ
Ga0318516_100118072	3300031543	Soil	MDLLAAKVWTYWLSIFIIVPIVLLVIGIGIAYLVKVVSLKYPRQ
Ga0318534_105512661	3300031544	Soil	MGLLGATVWTYWISWFIIIPVILVVVGIGIAYLVKVVSLKYPKQ
Ga0310686_10348030511	3300031708	Soil	MRILAGEVWTYWISFFVLIGVVLLVLGIGVLYVVKVVSLKYPKQ
Ga0318496_105242861	3300031713	Soil	MDLLAAKVWTYWLSIFIIVPIVLLVIGIGIAYLVKVVSLKY
Ga0318502_100643531	3300031747	Soil	ITGMDLLAAKVWTYWLSIFIIVPIVLLVIGIGIAYLVKVVSLKYPRQ
Ga0318554_108218281	3300031765	Soil	WTYWISWFIIIPVVLIVIGLGIAYLVKVVSLKYPKQ
Ga0318547_102988832	3300031781	Soil	AKVWTYWLSIFIIVPIVLLVIGIGIAYLVKVVSLKYPRQ
Ga0318548_106209621	3300031793	Soil	IAIMDLLAAKVWTYWLSIFIIVPIVLLVIGIGIAYLVKVVSLKYPRQ
Ga0318551_108087592	3300031896	Soil	MDLLAAKVWTYWLSIFIIVPVVLLVIGIGIAYLVKVVGLKYPRQ
Ga0306921_104841192	3300031912	Soil	MDLLAAKVWTYWLSIFIIVPIVLLVIGIGISYLVKVVSLKYPRQ
Ga0307479_100292016	3300031962	Hardwood Forest Soil	MALLAAKVWTYWISFFLVIPAVLVVLGLGVLYLVKVVSTKYPRQ
Ga0318513_103268563	3300032065	Soil	MAIVAADVWTYWISWFIIIPVVLIVIGLGIAYLVKVVSLKYPKQ
Ga0307471_1002919324	3300032180	Hardwood Forest Soil	MEPVVLAAKVWHYWISIFLVVPIALVLIALGVGYFRKVVSMKPPKR
Ga0348332_104856502	3300032515	Plant Litter	MDLIAGQVWTFWISWFLIIPVLLIVIGIGIAYLVKVVSLKYPKQ
Ga0348332_115078904	3300032515	Plant Litter	VATIIDMRILAGEVWTYWISFFVLIGVVVLVLGIGVLYLVKVVSLKYPKQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F089212

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences