Metagenome / Metatranscriptome Family F089219

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F089219
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	76 residues
Representative Sequence	MSCKKCASSNERSFKSEMTLAFRELENVDRAPLYVSQDISVCLDCGHIELRLPPAKLEQLKQEALKQHTQRRSAK
Number of Associated Samples	67
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	88.07 %
% of genes near scaffold ends (potentially truncated)	14.68 %
% of genes from short scaffolds (< 2000 bps)	56.88 %
Associated GOLD sequencing projects	55
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.56

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (77.064 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (29.358 % of family members)
Environment Ontology (ENVO)	Unclassified (76.147 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (90.826 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 23.30% β-sheet: 22.33% Coil/Unstructured: 54.37%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.56
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.56
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF13545	HTH_Crp_2	15.60
PF04338	DUF481	15.60
PF00072	Response_reg	8.26
PF01103	Omp85	6.42
PF06863	DUF1254	1.83
PF03176	MMPL	1.83
PF10677	DUF2490	0.92
PF00497	SBP_bac_3	0.92
PF02656	DUF202	0.92
PF11737	DUF3300	0.92
PF03372	Exo_endo_phos	0.92
PF01842	ACT	0.92
PF06965	Na_H_antiport_1	0.92
PF07228	SpoIIE	0.92
PF04831	Popeye	0.92
PF00484	Pro_CA	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG3137	Putative salt-induced outer membrane protein YdiY	Cell wall/membrane/envelope biogenesis [M]	15.60
COG1033	Predicted exporter protein, RND superfamily	General function prediction only [R]	1.83
COG2409	Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily	General function prediction only [R]	1.83
COG5361	Uncharacterized conserved protein	Mobilome: prophages, transposons [X]	1.83
COG0288	Carbonic anhydrase	Inorganic ion transport and metabolism [P]	0.92
COG2149	Uncharacterized membrane protein YidH, DUF202 family	Function unknown [S]	0.92
COG3004	Na+/H+ antiporter NhaA	Energy production and conversion [C]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	77.06 %
Unclassified	root	N/A	22.94 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	77.06 %
Unclassified	root	N/A	22.94 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	77.06 %
Unclassified	root	N/A	22.94 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	59.63 %
Unclassified	root	N/A	22.94 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.92 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.92 %

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	22.94 %
Unclassified	root	N/A	22.94 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	22.02 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.92 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	22.94 %
Unclassified	root	N/A	22.94 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	22.02 %
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	0.92 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	22.94 %
Unclassified	root	N/A	22.94 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	22.02 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.92 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	22.94 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	22.02 %
unclassified Acidobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae	2.75 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.92 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	22.94 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	22.02 %
Acidobacteriaceae bacterium KBS 89	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 89	2.75 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.92 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001546\|JGI12659J15293_10030057	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1343	Open in IMG/M
3300001867\|JGI12627J18819_10227236	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	752	Open in IMG/M
3300003220\|JGI26342J46808_1015043	Not Available	729	Open in IMG/M
3300003224\|JGI26344J46810_1017597	Not Available	593	Open in IMG/M
3300003224\|JGI26344J46810_1020725	Not Available	555	Open in IMG/M
3300003350\|JGI26347J50199_1007643	All Organisms → cellular organisms → Bacteria → Acidobacteria	1053	Open in IMG/M
3300003350\|JGI26347J50199_1013887	Not Available	834	Open in IMG/M
3300003352\|JGI26345J50200_1000796	All Organisms → cellular organisms → Bacteria	2695	Open in IMG/M
3300003367\|JGI26338J50219_1005355	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1000	Open in IMG/M
3300003367\|JGI26338J50219_1008409	Not Available	833	Open in IMG/M
3300003367\|JGI26338J50219_1024955	Not Available	533	Open in IMG/M
3300003370\|JGI26337J50220_1000892	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3130	Open in IMG/M
3300003370\|JGI26337J50220_1002763	All Organisms → cellular organisms → Bacteria → Acidobacteria	2022	Open in IMG/M
3300003505\|JGIcombinedJ51221_10044994	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1659	Open in IMG/M
3300004121\|Ga0058882_1586056	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1710	Open in IMG/M
3300004635\|Ga0062388_102136165	Not Available	582	Open in IMG/M
3300005541\|Ga0070733_10000333	All Organisms → cellular organisms → Bacteria	39823	Open in IMG/M
3300005541\|Ga0070733_10336865	All Organisms → cellular organisms → Bacteria → Acidobacteria	999	Open in IMG/M
3300005542\|Ga0070732_10208629	All Organisms → cellular organisms → Bacteria → Acidobacteria	1168	Open in IMG/M
3300005591\|Ga0070761_10000292	All Organisms → cellular organisms → Bacteria	33271	Open in IMG/M
3300005591\|Ga0070761_10010279	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5281	Open in IMG/M
3300005591\|Ga0070761_10081634	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1844	Open in IMG/M
3300005602\|Ga0070762_10010548	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4632	Open in IMG/M
3300005602\|Ga0070762_10035837	All Organisms → cellular organisms → Bacteria	2681	Open in IMG/M
3300005602\|Ga0070762_10114095	All Organisms → cellular organisms → Bacteria → Acidobacteria	1580	Open in IMG/M
3300005610\|Ga0070763_10206480	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1049	Open in IMG/M
3300005921\|Ga0070766_11098815	Not Available	549	Open in IMG/M
3300006176\|Ga0070765_100015832	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 89	5478	Open in IMG/M
3300010343\|Ga0074044_10475679	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	817	Open in IMG/M
3300011120\|Ga0150983_15160265	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2025	Open in IMG/M
3300012677\|Ga0153928_1071481	Not Available	666	Open in IMG/M
3300020579\|Ga0210407_10000544	All Organisms → cellular organisms → Bacteria → Acidobacteria	41896	Open in IMG/M
3300020579\|Ga0210407_10207860	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1521	Open in IMG/M
3300020580\|Ga0210403_10000736	All Organisms → cellular organisms → Bacteria	32989	Open in IMG/M
3300020581\|Ga0210399_10603595	Not Available	908	Open in IMG/M
3300020582\|Ga0210395_10011944	All Organisms → cellular organisms → Bacteria → Acidobacteria	6449	Open in IMG/M
3300020583\|Ga0210401_10004447	All Organisms → cellular organisms → Bacteria	14648	Open in IMG/M
3300020583\|Ga0210401_10008870	All Organisms → cellular organisms → Bacteria	9936	Open in IMG/M
3300020583\|Ga0210401_10147581	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2199	Open in IMG/M
3300020583\|Ga0210401_10515327	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1058	Open in IMG/M
3300021180\|Ga0210396_10155619	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2052	Open in IMG/M
3300021180\|Ga0210396_10785928	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	817	Open in IMG/M
3300021181\|Ga0210388_10001228	All Organisms → cellular organisms → Bacteria	20171	Open in IMG/M
3300021181\|Ga0210388_10047144	All Organisms → cellular organisms → Bacteria → Acidobacteria	3584	Open in IMG/M
3300021181\|Ga0210388_10085963	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2675	Open in IMG/M
3300021181\|Ga0210388_10426517	Not Available	1165	Open in IMG/M
3300021401\|Ga0210393_10001895	All Organisms → cellular organisms → Bacteria → Acidobacteria	17370	Open in IMG/M
3300021401\|Ga0210393_10123574	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2070	Open in IMG/M
3300021401\|Ga0210393_10247965	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1444	Open in IMG/M
3300021401\|Ga0210393_10269277	All Organisms → cellular organisms → Bacteria	1382	Open in IMG/M
3300021401\|Ga0210393_10723512	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	811	Open in IMG/M
3300021402\|Ga0210385_10036624	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3210	Open in IMG/M
3300021403\|Ga0210397_10067729	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2331	Open in IMG/M
3300021405\|Ga0210387_10817253	Not Available	823	Open in IMG/M
3300021405\|Ga0210387_10958226	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	751	Open in IMG/M
3300021407\|Ga0210383_11108790	Not Available	668	Open in IMG/M
3300021407\|Ga0210383_11518797	Not Available	553	Open in IMG/M
3300021420\|Ga0210394_10000710	All Organisms → cellular organisms → Bacteria	63799	Open in IMG/M
3300021474\|Ga0210390_10215158	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1626	Open in IMG/M
3300021479\|Ga0210410_10578416	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	999	Open in IMG/M
3300022731\|Ga0224563_1004782	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	972	Open in IMG/M
3300022731\|Ga0224563_1022225	Not Available	566	Open in IMG/M
3300022733\|Ga0224562_1011228	Not Available	713	Open in IMG/M
3300024227\|Ga0228598_1079307	Not Available	658	Open in IMG/M
3300024271\|Ga0224564_1053508	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	790	Open in IMG/M
3300026467\|Ga0257154_1001022	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3132	Open in IMG/M
3300026467\|Ga0257154_1001105	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3050	Open in IMG/M
3300026467\|Ga0257154_1024042	Not Available	897	Open in IMG/M
3300027034\|Ga0209730_1031175	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	602	Open in IMG/M
3300027371\|Ga0209418_1013784	All Organisms → cellular organisms → Bacteria → Acidobacteria	1300	Open in IMG/M
3300027548\|Ga0209523_1098041	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	607	Open in IMG/M
3300027698\|Ga0209446_1009946	All Organisms → cellular organisms → Bacteria	2334	Open in IMG/M
3300027698\|Ga0209446_1208497	Not Available	502	Open in IMG/M
3300027701\|Ga0209447_10000353	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	12238	Open in IMG/M
3300027701\|Ga0209447_10025999	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1637	Open in IMG/M
3300027729\|Ga0209248_10026433	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1811	Open in IMG/M
3300027729\|Ga0209248_10032566	All Organisms → cellular organisms → Bacteria	1620	Open in IMG/M
3300027737\|Ga0209038_10000916	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	8804	Open in IMG/M
3300027737\|Ga0209038_10278312	Not Available	500	Open in IMG/M
3300027767\|Ga0209655_10010456	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3144	Open in IMG/M
3300027768\|Ga0209772_10013075	All Organisms → cellular organisms → Bacteria → Acidobacteria	2297	Open in IMG/M
3300027768\|Ga0209772_10063791	All Organisms → cellular organisms → Bacteria	1107	Open in IMG/M
3300027783\|Ga0209448_10010308	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2989	Open in IMG/M
3300027783\|Ga0209448_10034451	All Organisms → cellular organisms → Bacteria → Acidobacteria	1697	Open in IMG/M
3300027795\|Ga0209139_10002638	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 89	6690	Open in IMG/M
3300027795\|Ga0209139_10029726	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1938	Open in IMG/M
3300027829\|Ga0209773_10000680	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 89	11315	Open in IMG/M
3300027853\|Ga0209274_10003508	All Organisms → cellular organisms → Bacteria	7496	Open in IMG/M
3300027853\|Ga0209274_10421253	Not Available	690	Open in IMG/M
3300027867\|Ga0209167_10004136	All Organisms → cellular organisms → Bacteria	7412	Open in IMG/M
3300027879\|Ga0209169_10051117	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2151	Open in IMG/M
3300027889\|Ga0209380_10146066	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1381	Open in IMG/M
3300027895\|Ga0209624_10001045	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	23062	Open in IMG/M
3300028906\|Ga0308309_10005661	All Organisms → cellular organisms → Bacteria	7564	Open in IMG/M
3300028906\|Ga0308309_10066858	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2662	Open in IMG/M
3300028906\|Ga0308309_10150781	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1870	Open in IMG/M
3300031231\|Ga0170824_126110300	All Organisms → cellular organisms → Bacteria → Proteobacteria	3012	Open in IMG/M
3300031708\|Ga0310686_102720935	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1325	Open in IMG/M
3300031708\|Ga0310686_105141764	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1165	Open in IMG/M
3300031708\|Ga0310686_107764211	All Organisms → cellular organisms → Bacteria → Acidobacteria	2466	Open in IMG/M
3300031708\|Ga0310686_113798797	Not Available	667	Open in IMG/M
3300031715\|Ga0307476_10524464	Not Available	878	Open in IMG/M
3300031718\|Ga0307474_10709882	Not Available	794	Open in IMG/M
3300031754\|Ga0307475_10600447	All Organisms → cellular organisms → Bacteria → Acidobacteria	881	Open in IMG/M
3300031823\|Ga0307478_10005816	All Organisms → cellular organisms → Bacteria	8616	Open in IMG/M
3300031823\|Ga0307478_11435811	Not Available	572	Open in IMG/M
3300032180\|Ga0307471_100028179	All Organisms → cellular organisms → Bacteria → Acidobacteria	4271	Open in IMG/M
3300032180\|Ga0307471_100039284	All Organisms → cellular organisms → Bacteria → Acidobacteria	3768	Open in IMG/M
3300034163\|Ga0370515_0039454	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2110	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.17%
Host-Associated	Host-Associated	1.83%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	72.48%
Aquatic	Environmental → Aquatic	25.69%
Plants	Host-Associated → Plants	0.92%
Fungi	Host-Associated → Fungi	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	72.48%
Freshwater	Environmental → Aquatic → Freshwater	25.69%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.92%
Mycelium	Host-Associated → Fungi → Mycelium	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	47.71%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	25.69%
Loam	Environmental → Terrestrial → Soil → Loam	22.94%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.92%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	36.70%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	25.69%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	22.94%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	11.01%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.92%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	29.36%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	25.69%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	14.68%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	8.26%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.34%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	6.42%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	3.67%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.92%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.92%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.92%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.92%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001546	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300003220	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM1	Environmental	Open in IMG/M
3300003224	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM3	Environmental	Open in IMG/M
3300003350	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3	Environmental	Open in IMG/M
3300003352	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1	Environmental	Open in IMG/M
3300003367	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM3	Environmental	Open in IMG/M
3300003370	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004121	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF109 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012677	Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ012 MetaG	Host-Associated	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300022731	Soil microbial communities from Bohemian Forest, Czech Republic ? CSU4	Environmental	Open in IMG/M
3300022733	Soil microbial communities from Bohemian Forest, Czech Republic ? CSU3	Environmental	Open in IMG/M
3300024227	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU4	Host-Associated	Open in IMG/M
3300024271	Soil microbial communities from Bohemian Forest, Czech Republic ? CSU5	Environmental	Open in IMG/M
3300026467	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-A	Environmental	Open in IMG/M
3300027034	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027371	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027548	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027698	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027701	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027729	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027737	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027767	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027768	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027783	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027795	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027829	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027853	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)	Environmental	Open in IMG/M
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300034163	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_04D_14	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12659J15293_100300573	3300001546	Forest Soil	MLKLGRGGGSMSCKKCASNNERSFKSELTLAFRELENVDQAPLYFSQDISVCLDCGHIELTLPSAKLEHLKQEALKQHKQRRSAS*
JGI12627J18819_102272362	3300001867	Forest Soil	MSCKKCASSSQRSFKSEMSIAFREHENVNRAPVYICQDILVCLDCGYIELSLPPAKLEQLKQEALGPDSHRRFGQDGSVES*
JGI26342J46808_10150432	3300003220	Bog Forest Soil	MLELDRRGGIMSCKKCASSNERSFKSEMTLAFRELENVDRAPLYVSQDISVCLDCGHIELRLPPATLEQLKQEALKQHTQRRSAT*
JGI26344J46810_10175972	3300003224	Bog Forest Soil	MACKKCASSNERSFKSEMTLAFREPEDVDRSPLYVSQDISVCLDCGHIELTLPAAKLERLKQEASKQHKQRRAST*
JGI26344J46810_10207252	3300003224	Bog Forest Soil	MSCKKCASSNERSFKSEMTLAFRELENVDRAPLYVSQDISVCLDCGHIELRLPPAKLEQLKQEALKQHTQRRSAK*
JGI26347J50199_10076432	3300003350	Bog Forest Soil	MSCRKCASSNERSLKSEMTLAFPELENVDRAPLYVSQDISACLDCGHIELALPLAKLEQLKQQALKQHKQRSSAS*
JGI26347J50199_10138872	3300003350	Bog Forest Soil	MSCKKCTSSNERSFKSEMTLAFREVENVDRAPLYVSQDXSVCLDCGHIELSLPPAKLEHLKQEALKQHTQRRSAT*
JGI26345J50200_10007964	3300003352	Bog Forest Soil	MLELSRGGGSMACKKCASGNERSFKSEMTLAFREPEDVDRAPLYVSQDISVCLDCGHIELTLPPAKLERLKQEASKQHKQRRSAT
JGI26338J50219_10053551	3300003367	Bog Forest Soil	MSCKKCASSNERSFKSEMTLAFRELENVDRAPLYVSQDISVCLDCGHIELRLPPATLEQLKQEALKQHTQRRSAX*
JGI26338J50219_10084091	3300003367	Bog Forest Soil	MACKKCASGNERSFKSEMTLAFREPEDVDRAPLYVSQDISVCLDCGHIELTLPXAKLERLKQEASKQHKQRRAST*
JGI26338J50219_10249552	3300003367	Bog Forest Soil	KKCASTNERSFKSEMTLAFRELENVDRAPLYLSQDISLCLDCGHIELTLPPAKLEQLKQDAWKQHKQRRSAK*
JGI26337J50220_10008923	3300003370	Bog Forest Soil	MSCKKCASTNERSFKSEMTLAFRELENVDRAPLYLSQDISLCLDCGHIELTLPPAKLEQLKQDAWKQHKQRRSAK*
JGI26337J50220_10027633	3300003370	Bog Forest Soil	MPCKKCASSNERSFKSEMTLAFREPEDVDRAPLYVSQDISVCLDCGHIELTLPPAKLERLKQEASKQHKQRRSAT*
JGIcombinedJ51221_100449942	3300003505	Forest Soil	MPCGKCASKNERSFKSEMSLAFGXLXNVDRAPLYVSQDISVCLDCGHIELTLPPAKLEQLKQEPLKQHKRGRSAG*
Ga0058882_15860561	3300004121	Forest Soil	MPCGKCASKNERSFKSEMSLAFGELENVDRAPLYVSQDISVCLDCGHIELTLPPAKLEQLKQEPLKQHKRGRSAG*
Ga0062388_1021361652	3300004635	Bog Forest Soil	MSCKKCASANERSFKSEMSLAFRELENVDRAPLYVSQDISVCLDCGHVELTLPPAKLELLKREASRPYTQRRSAK*
Ga0070733_1000033320	3300005541	Surface Soil	MSCRKCASVNERSFKSEMSLAFRELENVDRAPLYVSEDISICLDCGHVELTLPPAKLEQLKREASKPHTQRRSAK*
Ga0070733_103368652	3300005541	Surface Soil	MPCQKCGASSQRSFKSEMSIAFRGHENVNRAPVYICQDILVCLDCGYIELSLPPAKLEHLKQEARGPDSQRRSGQDGSVNS*
Ga0070732_102086292	3300005542	Surface Soil	MPCQKCGASSQRSFKSEMSIAFRGHENVNRAPVYICQDILVCLDCGYIELSLPPAKLEQLKQEARGPDSQRRSGQDGSVNS*
Ga0070761_1000029223	3300005591	Soil	MSCKKCASANERSFKSEMSLAFRELENVDRAPLYVSQDISVCLDCGHVELTLPPAKLELLKREASKPRTQRRSAP*
Ga0070761_100102796	3300005591	Soil	MPCKKCASGNERSFKSEMTLAFRELESVDRTPLYVSQDISVCLDCGHIELTLPPAKLEQLKQEASKQHKQHRSAR*
Ga0070761_100816343	3300005591	Soil	MPCKKCASNNERSFKSEMTLAFREHENVDRAPLYVSQDILVCLDCGHIELTLPTAKLEQLKQEALKQHQQSRSAK*
Ga0070762_100105486	3300005602	Soil	MSCKKCASANERSFKSEMSLAFRELENVDRAPLYVSQDISVCLDCGHVELTLPPAKLELLKREASRPHTQRRSAP*
Ga0070762_100358375	3300005602	Soil	MSCKKCASANERSFKSEMSLAFRELENVDRAPLYVSQDISVCLDCGHVELTLPPAKLELLKREAS
Ga0070762_101140952	3300005602	Soil	MPCKKCASSNERSFKSEMTLAFRELENVNRAPLYVSQDISVCLDCGHIELTLPPAKLEQLKQEALKQQPKGRSAN*
Ga0070763_102064801	3300005610	Soil	MPCGKCASKNERSFKSEMSLAFGKLDNVDRAPLYVSQDISVCLDCGHIELTLPPAKLEQLKQEPLKQHKRGRSAG*
Ga0070766_110988152	3300005921	Soil	MSCNGCKSGNQRSFKSEMTIAFRELENVNQPPLYICQDILVCLDCGHIEFRLPAEKLEQLKQKPLKSFSQRRSTHEPSGNS*
Ga0070765_1000158324	3300006176	Soil	MSCGKCASNNERSFKSEMTVAFRELENVDRAPLYVSQDISVCLDCGHIELTLPSAQLEQLKQEALKQHKQRRSAK*
Ga0074044_104756792	3300010343	Bog Forest Soil	SCKKCASSNERSFKSEMTLAFRELENVDRAPLYLSQDLSLCLDCGHIELTLPPAKLEQLKQEALKPHKQRRSAQ*
Ga0150983_151602652	3300011120	Forest Soil	MPCNGCKSGNQRSFKSEMTIAFREPENVNQPPLYICQDIFVCLDCGHIELALPAEKLEQLKQKPLKSFSHRRSTQEPSSNP*
Ga0153928_10714812	3300012677	Attine Ant Fungus Gardens	MSCKKCASSNQQSFKSEMTIAFREHENVNRAPVYFSQDIAVCLDCGYLELNLPPAKLERLKQDASGPASFKMAP*
Ga0210407_1000054420	3300020579	Soil	MSCKKCGSSNERSFKSEMTLAFRELENVDQAPLYVSQDISVCLDCGHIELTLPSAKLEQLKLEALKLHKQRRSAK
Ga0210407_102078602	3300020579	Soil	MSCKKCASANERSFKSEMSLAFRELENVDRAPLYVSQDISVCLDCGHVELTLPPAKLELLKREASRPHTQRRSAP
Ga0210403_1000073625	3300020580	Soil	MSCKKCGSSNERSFKSEMTLAFRELENVDQAPLYLSQDISVCLDCGHIEFTLPSAKLEQLKHEALMRHKQRRSAK
Ga0210399_106035952	3300020581	Soil	MPCGKCASKNERSFKSEMSLAFGKLDNVDRAPLYVSQDISVCLDCGHIELTLPPAKLEQLKQEPLKQH
Ga0210395_100119442	3300020582	Soil	MPCGKCASKNERSFKSEMSLAFGELENVDRAPLYVSQDISVCLDCGHIELTLPPAKLEQLKQEPLKQHKRGRSAG
Ga0210401_1000444719	3300020583	Soil	MSCKKCASNNERSFKSELTLAFRELENVDRAPLYVSQDISVCLDCGHTELTLPPAKLEQLKQEALRHHKQRRSAK
Ga0210401_100088708	3300020583	Soil	MPCNGCKSGNQRSFKSEMTIAFREPENVNQPPLYICQDIFVCLDCGHIELALPAEKLEQLKQKPLKSFSHRRSTQEPSSNP
Ga0210401_101475813	3300020583	Soil	MACKKCASSNERSFKSEMTLAFRELENVDQAPLYVSQDISVCLDCGHIEFTLPSAKLQQLKHEALKQHKQRRSAK
Ga0210401_105153271	3300020583	Soil	MSCKKCASNNERSFRSELTLAFRELENVDQAPLYFSQDISVCLDCGHIELTLPSAKLQHLKQEALKQHKQRRSAG
Ga0210396_101556193	3300021180	Soil	MSCKKCASGNERSFKSEMSLAFGELENVDRAPLYVSQDISVCLDCGYIELTLPPTKLAQLKQEASKQHTKRRSAT
Ga0210396_107859282	3300021180	Soil	GGGSMSCKKCGSSNERSFKSEMTLAFRELENVDQAPLYVSQDISVCLDCGHIELTLPSAKLEQLKLEALKLHKQRRSAK
Ga0210388_1000122813	3300021181	Soil	MPCGKCASKNERSFKSEMSLAFGKLDNVDRAPLYVSQDISVCLDCGHIELTLPPAKLEQLKQEPLKQHKRGRSAG
Ga0210388_100471443	3300021181	Soil	MPCKKCASSNERSFKSEMTLAFRELENVNRAPLYVSQDISVCLDCGHIELTLPPAKLEQLKQEALKQQPKGRSAN
Ga0210388_100859633	3300021181	Soil	MSCKKCASNNERSFKSELTLAFRELENVDQAPLYFSQDISVCLDCGHIELTLPSAKLQHLKQEALKQHKQRRSAG
Ga0210388_104265172	3300021181	Soil	MSCKKCASANERSFKSEMSLAFRELENVDRAPLYVSQDISVCLDCGHVELTLPPAKLELLKREASKPRTQRRSAP
Ga0210393_1000189516	3300021401	Soil	MSCKKCGSSNERSFKSEMTLAFRELENVDQAPLYVSQDISVCLDCGHIEFTLPSAKLEQLKHEALMRHKQRRSAK
Ga0210393_101235742	3300021401	Soil	MSCKKCASNNERSFKSELTLAFRELENVDQAPLYFSQDISVCLDCGHIELTLPSAKLEHLKQEALKQHKQRRSAS
Ga0210393_102479653	3300021401	Soil	MACKKCESSNERSFKSEMSLAFRELENVDRSPLYVSQDLSVCLDCGHIELTLPPAKLEQLKREASKPHAQRRSAK
Ga0210393_102692771	3300021401	Soil	MSCKKCASGNERSFKSEMSLAFGELENVDRAPLYVSQDISVCLDCGYIELTLPPAKLAQLKQEASKQHTKRRSAT
Ga0210393_107235121	3300021401	Soil	GSMSCKKCGSSNERSFKSEMTLAFRELENVDQAPLYVSQDISVCLDCGHIELTLPSAKLEQLKLEALKLHKQRRSAK
Ga0210385_100366243	3300021402	Soil	MPCNGCKSGNQRSFKSEMTIAFREPENVNQPPLYICQDIFVCLDCGHIELALPADKLEQLKQKPLKSFSHRRSTQEPSSNP
Ga0210397_100677293	3300021403	Soil	MPCNGCKSGNQRSFKSEMTIAFREPENVNQPPLYICQDIFVCLDCGHIELALPAEKLEQLKQKPLKSFSHRRSTHEPSSNP
Ga0210387_108172532	3300021405	Soil	MLELGRGGGSMSCKKCGSSNERSFKSEMTLAFRELENVDQAPLYVSQDISVCLDCGHIELTLPSAKLEQLKLEALKLHKQRRSAK
Ga0210387_109582262	3300021405	Soil	MSCKKCASSSQRSFKSEMSIAFREHENVNRAPVYICQDILVCLDCGYIELSLPPAKLEQLKQEAPGPDSQRRFSQDGSVDS
Ga0210383_111087902	3300021407	Soil	MSCKKCASGNERSFKSEMSLAFGELENVDRAPLYVSQDISVCLDCGYIELTLPPTKLAQLKQEASKQHTKRRSPT
Ga0210383_115187971	3300021407	Soil	MSCKKCGSSNERSFKSEMTLAFRELENVDQAPLYLSQDISVCLDCGHIEFTLPSAKLEQLKHEALMRHKQRRSA
Ga0210394_1000071056	3300021420	Soil	MSCKKCASSNERSFKSEMTLAFREPENVDRAPLYVSQDISVCLDCGHIELELPPAKLEQLKQEAFRQHTQRRSAK
Ga0210390_102151583	3300021474	Soil	FKSEMSLAFRELENVDRAPLYVSQDISVCLDCGHVELTLPPAKLELLKREASRPHTQRRSAP
Ga0210410_105784161	3300021479	Soil	MSCKKCGSSNERSFKSEMTLAFRELENVDQAPLYLSQDISVCLDCGHIEFTLPSAKLEQLKHEALKQHKQRRSAK
Ga0224563_10047821	3300022731	Soil	MSCTKCASSNERSFKSEMTLAFRELENVDQAPLYVSQDISVCLDCGHIELTLPSAKLEQLKDETLKQHKQRRSAT
Ga0224563_10222251	3300022731	Soil	MSCKKCASANERSFKSEMSLAFRELENVDRAPLYVSQDISVCLDCGHVELTLPPAKLELLKREASSPHTQRRS
Ga0224562_10112281	3300022733	Soil	MSCKKCASANERSFKSEMSLAFRELENVDRAPLYVSQDISVCLDCGHVELTLPPAKLELLKREASSPHTQRRSAK
Ga0228598_10793071	3300024227	Rhizosphere	MSCRKCASSNERSFKSEMTVAFRELENVDQAPVYICQDILVCLDCGRVELSLPPAKLEQLRQEAMRPSARRSSARDGSVEP
Ga0224564_10535082	3300024271	Soil	GRGGSSMSCTKCASSNERSFKSEMTLAFRELENVDQAPLYVSQDISVCLDCGHIELTLPSAKLEQLKDETLKQHKQRRSAT
Ga0257154_10010223	3300026467	Soil	MSCRKCASNNERSFKSEMTLAFREPENVDRAPLYVSQDISVCLDCGHIELTLPSAKLEQLKQEALKQHQQRRAAT
Ga0257154_10011053	3300026467	Soil	MPCKKCASNNERSFKSEMTLAFREHENVDRTPLYVSQDILVCLDCGHIELTLPTAKLEQLKQEALKQHKQSRSAK
Ga0257154_10240422	3300026467	Soil	MSCRKCASNNERSFKSEMTLAFREPENVDRSPLYVSQDISVCLDCGHIEITLPSAKLEQLKQEALKQQQKRRSAT
Ga0209730_10311751	3300027034	Forest Soil	MSCKKCASGNERSFKSEMSLAFGELENVDRAPLYVSQDISVCLDCGHIELTLPPTKLAQLKQEASKQHTKRRSAT
Ga0209418_10137842	3300027371	Forest Soil	MSCKKCASSSQRSFKSEMSIAFREHENVNRAPVYICQDILVCLDCGYIELSLPPAKLEQLKQEALGPDSHRRFGQDGSVES
Ga0209523_10980412	3300027548	Forest Soil	NRAPAGKGAMSCKKCASSSQRSFKSEMSIAFREHENVNRAPVYICQDILVCLDCGYIELSLPPAKLEQLKQEALGPDSHRRFGQDGSVES
Ga0209446_10099464	3300027698	Bog Forest Soil	MSCKKCASSNERSFKSEMTLAFRELENVDRAPLYVSQDISVCLDCGHIELRLPPATLEQLKQEALKQHTQRRSAK
Ga0209446_12084971	3300027698	Bog Forest Soil	MACKKCASSNERSFKSEMTLAFREPEDVDRSPLYVSQDISVCLDCGHIELTLPAAKLERLKQEASKQHKQRRAST
Ga0209447_1000035311	3300027701	Bog Forest Soil	MSCKKCASSNERSFKSEMTLAFRELENVDRAPLYVSQDISVCLDCGHIELRLPPAKLEQLKQEALKQHTQRRSAK
Ga0209447_100259992	3300027701	Bog Forest Soil	MSCRKCASSNERSLKSEMTLAFPELENVDRAPLYVSQDISACLDCGHIELALPLAKLEQLKQQALKQHKQRSSAS
Ga0209248_100264333	3300027729	Bog Forest Soil	MACKKCASSNERSFKSEMTLAFREPEDVDRAPLYVSQDISVCLDCGHIELTLPAAKLERLKQEASKQHKQRRAST
Ga0209248_100325663	3300027729	Bog Forest Soil	MSCKKCASTNERSFKSEMTLAFRELENVDRAPLYLSQDISLCLDCGHIELTLPPAKLEQLKQDAWKQHKQRRSAK
Ga0209038_100009167	3300027737	Bog Forest Soil	MACKKCASGNERSFKSEMTLAFREPEDVDRAPLYVSQDISVCLDCGHIELTLPAAKLERLKQEASKQHKQRRAST
Ga0209038_102783121	3300027737	Bog Forest Soil	MSCKKCASANERSFKSEMSLAFRELENVDRAPLYVSQDISVCLDCGHVELTLPPAKLELLKREASRPYTQRRSAK
Ga0209655_100104563	3300027767	Bog Forest Soil	MACKKCASGNERSFKSEMTLAFREPEDVDRAPLYVSQDISVCLDCGHIELTLPPAKLERLKQEASKQHKQRRSAT
Ga0209772_100130752	3300027768	Bog Forest Soil	MSCKKCTSSNERSFKSEMTLAFREVENVDRAPLYVSQDVSVCLDCGHIELSLPPAKLEHLKQEALKQHTQRRSAT
Ga0209772_100637911	3300027768	Bog Forest Soil	MSCRKCASSNERSLKSEMTLAFPELENVDRAPLYVSQDISACLDCGHIELALPLAKLEQLKQQALK
Ga0209448_100103083	3300027783	Bog Forest Soil	MPCKKCASSNERSFKSEMTLAFREPEDVDRAPLYVSQDISVCLDCGHIELTLPAAKLERLKQEASKQHKQRRSAT
Ga0209448_100344512	3300027783	Bog Forest Soil	MSCKKCTSSNERSFKSEMTLAFREVENVDRAPLYVSQDVSVCLDCGHIELSLPPAKLEHLKQEVLKQHTQRRSAT
Ga0209139_100026386	3300027795	Bog Forest Soil	MACKKCASGNERSFKSEMTLAFREPEDVDRAPLYVSQDISVCLDCGHIELTLPPAKLEQLKQEASKQHKQRRAST
Ga0209139_100297262	3300027795	Bog Forest Soil	MSCKKCASTNERSFKSEMTLAFRELENVDRAPLYLSQDISLCLDCGHMELTLPPAKLEQLRPEALQQHKQRRSAK
Ga0209773_100006808	3300027829	Bog Forest Soil	MACKKCASGNERSFKSEMTLAFREPEDVDRAPLYVSQDISVCLDCGHIELTLPAAKLERLKQEASKQHKQRRSAT
Ga0209274_100035082	3300027853	Soil	MPCKKCASGNERSFKSEMTLAFRELESVDRTPLYVSQDISVCLDCGHIELTLPPAKLEQLKQEASKQHKQHRSAR
Ga0209274_104212532	3300027853	Soil	MPCKKCASNNERSFKSEMTLAFREHENVDRAPLYVSQDILVCLDCGHIELTLPTAKLEQLKQEALKQHQQSRSAK
Ga0209167_100041366	3300027867	Surface Soil	MSCRKCASVNERSFKSEMSLAFRELENVDRAPLYVSEDISICLDCGHVELTLPPAKLEQLKREASKPHTQRRSAK
Ga0209169_100511171	3300027879	Soil	MSCKKCASNNERSFKSELTLAFRELENVDQAPLYFSQDISVCLDCGHIELTLPPAKLEQLKQEPLKQHKRGRSAG
Ga0209380_101460663	3300027889	Soil	MLELGRRGGSMPCGKCASKNERSFKSEMSLAFGELENVDRAPLYVSQDISVCLDCGHIELTLPPAKLEQLKQEPLKQHKRGRSAG
Ga0209624_1000104512	3300027895	Forest Soil	MPCKKCASSNERSFKTEMTLAFRELENVNRAPLYVSQDISVCLDCGHIELTLPPAKLEQLKQEALKQQPKGRSAN
Ga0308309_100056615	3300028906	Soil	MSCGKCASNNERSFKSEMTVAFRELENVDRAPLYVSQDISVCLDCGHIELTLPSAQLEQLKQEALKQHKQRRSAK
Ga0308309_100668583	3300028906	Soil	MSCKKCASNNERSFKSELTLAFRELENVDQAPLYFSQDISVCLDCGHIELTLPSAKLEHLKQEALKQHKQRRSAG
Ga0308309_101507813	3300028906	Soil	MPCGKCASKNERSFKSEMSLAFGKLENVDRAPLYVSQDISVCLDCGHIELTLPPAKLEQLKQEPLKQHKRGRSAG
Ga0170824_1261103005	3300031231	Forest Soil	MSCKKCASSNQRSFKSEMTIAFRELENVNQAPVYFCQDAAVCLDCGHLELNLPPAKLEQLKQEALGPDSRRFGQGGSVNS
Ga0310686_1027209352	3300031708	Soil	MSCRKCASSNERSFKSEMTVAFRELEHVDQAPVYICQDISVCLDCGHVELSLPPESLEQLKREAMRLPSRRAAGQGGSGEP
Ga0310686_1051417642	3300031708	Soil	MSCRKCASSNERSLKSEMTLAFPELENVDRAPLYVSQDISACLDCGHIELALPLAKLEQLKLQALKQHKQRSSAS
Ga0310686_1077642112	3300031708	Soil	MSCRKCASSNERSFKSEMTVAFRELENVDQAPVYICQDILVCLDCGRVELSLPPAKLEQLRQEAMRPSARRGSAQNGSVEP
Ga0310686_1137987972	3300031708	Soil	MPCKKCTSSNVRSFKSEMTLAFPELEDVDRAPLYVSQDISVCLDCGHIELALPPAKLEQLKQEALKQHKQRRSAK
Ga0307476_105244642	3300031715	Hardwood Forest Soil	MSCKKCASSNQQSFKSEMTIAFREHENVNRAPVYFSQDIAVCLDCGHLELSLPPAKLELLKQEASGPASFKMAP
Ga0307474_107098822	3300031718	Hardwood Forest Soil	MSCKKCASGNQRSFKSEMTIAFREHENVNRAPVYFSQDIAVCLDCGYLELNLPPAKLEQLKQDASGPASFKMAP
Ga0307475_106004471	3300031754	Hardwood Forest Soil	MSCKKCASSNQQSFKSEMTIAFREHENVNRAPVYFSQDIAVCLDCGYLELNLPPAKLEQLKQEASGPASFKMAP
Ga0307478_100058167	3300031823	Hardwood Forest Soil	MSCKGCGAGNQRSFKSEMTIAFREPENVNQAPLYVCQDILVCLDCGHIEISLPAEKLEQLKQKPSKSFSQRSSAHESSGKS
Ga0307478_114358112	3300031823	Hardwood Forest Soil	KCASSNQQSFKSEMTIAFREHENVNRAPVYFSQDIAVCLDCGHLELSLPPAKLELLKQEASGPASFKMAP
Ga0307471_1000281792	3300032180	Hardwood Forest Soil	MSCQKCASSSQRSFKSEMSIAFREHENVNRAPVYICQDILVCLDCGYIELSLPPAKLEQLKQEALGPDSQRRFGQDGSVDS
Ga0307471_1000392843	3300032180	Hardwood Forest Soil	MSCKKCTSSSQRSFKSEMSIAFREHENVNRAPVYICQDILVCLDCGYIELSLPPAKLEQLKQEALGPDSQRRFGQDGSVDS
Ga0370515_0039454_1497_1724	3300034163	Untreated Peat Soil	MSCKKCASSNERSFKSELTLAFRELENVDRAPLYVSQDISVCLDCGHTELTLPPAKLEQLKQEASKQHRQRRSAR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F089219

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences