Metagenome Family F089226

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F089226
Family Type	Metagenome
Number of Sequences	109
Average Sequence Length	40 residues
Representative Sequence	VVPSCVFAGVGGYYASKQSGLAGVFRRAADGSDWKHALSE
Number of Associated Samples	84
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	92.66 %
% of genes near scaffold ends (potentially truncated)	98.17 %
% of genes from short scaffolds (< 2000 bps)	97.25 %
Associated GOLD sequencing projects	79
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.19

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (56.881 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (48.624 % of family members)
Environment Ontology (ENVO)	Unclassified (68.807 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (48.624 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 8.82% Coil/Unstructured: 91.18%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.19
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.19
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF04392	ABC_sub_bind	6.42
PF08240	ADH_N	4.59
PF02776	TPP_enzyme_N	3.67
PF02426	MIase	2.75
PF04191	PEMT	2.75
PF14833	NAD_binding_11	1.83
PF07758	DUF1614	1.83
PF00239	Resolvase	1.83
PF04828	GFA	1.83
PF02518	HATPase_c	1.83
PF13193	AMP-binding_C	1.83
PF00118	Cpn60_TCP1	0.92
PF02566	OsmC	0.92
PF08327	AHSA1	0.92
PF04909	Amidohydro_2	0.92
PF03706	LPG_synthase_TM	0.92
PF00166	Cpn10	0.92
PF02738	MoCoBD_1	0.92
PF03972	MmgE_PrpD	0.92
PF00441	Acyl-CoA_dh_1	0.92
PF02781	G6PD_C	0.92
PF09587	PGA_cap	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	6.42
COG4829	Muconolactone delta-isomerase	Secondary metabolites biosynthesis, transport and catabolism [Q]	2.75
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	1.83
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	1.83
COG3791	Uncharacterized conserved protein	Function unknown [S]	1.83
COG4089	Uncharacterized membrane protein	Function unknown [S]	1.83
COG0234	Co-chaperonin GroES (HSP10)	Posttranslational modification, protein turnover, chaperones [O]	0.92
COG0364	Glucose-6-phosphate 1-dehydrogenase	Carbohydrate transport and metabolism [G]	0.92
COG0392	Predicted membrane flippase AglD2/YbhN, UPF0104 family	Cell wall/membrane/envelope biogenesis [M]	0.92
COG0459	Chaperonin GroEL (HSP60 family)	Posttranslational modification, protein turnover, chaperones [O]	0.92
COG1764	Organic hydroperoxide reductase OsmC/OhrA	Defense mechanisms [V]	0.92
COG1765	Uncharacterized OsmC-related protein	General function prediction only [R]	0.92
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	0.92
COG2079	2-methylcitrate dehydratase PrpD	Carbohydrate transport and metabolism [G]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	56.88 %
Unclassified	root	N/A	43.12 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	56.88 %
Unclassified	root	N/A	43.12 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	56.88 %
Unclassified	root	N/A	43.12 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	44.04 %
Unclassified	root	N/A	43.12 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.12 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	34.86 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.12 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	11.01 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	9.17 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.12 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	11.01 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2.75 %
Stappiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae	0.92 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.92 %
Rhodovibrionaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhodovibrionaceae	0.92 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.12 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	11.01 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.92 %
Tistlia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhodovibrionaceae → Tistlia	0.92 %
Labrenzia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Labrenzia	0.92 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.92 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.12 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	11.01 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	0.92 %
unclassified Labrenzia	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Labrenzia → unclassified Labrenzia	0.92 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.92 %
Tistlia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhodovibrionaceae → Tistlia	0.92 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.12 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	11.01 %
Rhodoplanes sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp.	0.92 %
Labrenzia sp. OB1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Labrenzia → unclassified Labrenzia → Labrenzia sp. OB1	0.92 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.92 %
Tistlia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhodovibrionaceae → Tistlia	0.92 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.92 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005518\|Ga0070699_100291792	All Organisms → cellular organisms → Bacteria → Proteobacteria	1462	Open in IMG/M
3300005587\|Ga0066654_10802205	Not Available	534	Open in IMG/M
3300005764\|Ga0066903_101291967	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1362	Open in IMG/M
3300005764\|Ga0066903_108858706	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	510	Open in IMG/M
3300006047\|Ga0075024_100330680	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	756	Open in IMG/M
3300006175\|Ga0070712_102025480	Not Available	504	Open in IMG/M
3300006791\|Ga0066653_10324563	Not Available	776	Open in IMG/M
3300006800\|Ga0066660_11145388	Not Available	613	Open in IMG/M
3300010043\|Ga0126380_10551454	Not Available	897	Open in IMG/M
3300010046\|Ga0126384_11274407	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	681	Open in IMG/M
3300010048\|Ga0126373_10898962	All Organisms → cellular organisms → Bacteria → Terrabacteria group	949	Open in IMG/M
3300010162\|Ga0131853_10863670	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp.	717	Open in IMG/M
3300010376\|Ga0126381_101365107	Not Available	1024	Open in IMG/M
3300012205\|Ga0137362_11773622	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	504	Open in IMG/M
3300012211\|Ga0137377_10130615	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2400	Open in IMG/M
3300012351\|Ga0137386_10971830	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Labrenzia → unclassified Labrenzia → Labrenzia sp. OB1	605	Open in IMG/M
3300012362\|Ga0137361_11103540	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	714	Open in IMG/M
3300012918\|Ga0137396_11246346	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	521	Open in IMG/M
3300012948\|Ga0126375_11850633	Not Available	528	Open in IMG/M
3300012971\|Ga0126369_10059802	All Organisms → cellular organisms → Bacteria	3295	Open in IMG/M
3300012971\|Ga0126369_11696433	Not Available	721	Open in IMG/M
3300015372\|Ga0132256_103033435	Not Available	564	Open in IMG/M
3300016294\|Ga0182041_10787738	Not Available	849	Open in IMG/M
3300016294\|Ga0182041_11074262	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	730	Open in IMG/M
3300016294\|Ga0182041_11192540	All Organisms → cellular organisms → Bacteria	694	Open in IMG/M
3300016319\|Ga0182033_11867039	All Organisms → cellular organisms → Bacteria	546	Open in IMG/M
3300016341\|Ga0182035_10926003	Not Available	770	Open in IMG/M
3300016357\|Ga0182032_11884314	All Organisms → cellular organisms → Bacteria	523	Open in IMG/M
3300016387\|Ga0182040_10154922	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1638	Open in IMG/M
3300016387\|Ga0182040_10279535	Not Available	1267	Open in IMG/M
3300016422\|Ga0182039_11170347	Not Available	694	Open in IMG/M
3300016445\|Ga0182038_10581217	Not Available	965	Open in IMG/M
3300018006\|Ga0187804_10208638	All Organisms → cellular organisms → Bacteria → Proteobacteria	836	Open in IMG/M
3300020580\|Ga0210403_11138323	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	604	Open in IMG/M
3300021088\|Ga0210404_10383747	Not Available	784	Open in IMG/M
3300021406\|Ga0210386_10938263	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	740	Open in IMG/M
3300021560\|Ga0126371_12185425	Not Available	668	Open in IMG/M
3300021560\|Ga0126371_13655842	Not Available	519	Open in IMG/M
3300025928\|Ga0207700_10600120	All Organisms → cellular organisms → Bacteria → Proteobacteria	980	Open in IMG/M
3300027635\|Ga0209625_1024371	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1346	Open in IMG/M
3300027874\|Ga0209465_10076902	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1622	Open in IMG/M
3300031545\|Ga0318541_10192950	Not Available	1126	Open in IMG/M
3300031545\|Ga0318541_10535185	Not Available	655	Open in IMG/M
3300031561\|Ga0318528_10371407	Not Available	768	Open in IMG/M
3300031564\|Ga0318573_10266550	Not Available	914	Open in IMG/M
3300031573\|Ga0310915_10823112	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	653	Open in IMG/M
3300031668\|Ga0318542_10657608	Not Available	547	Open in IMG/M
3300031680\|Ga0318574_10600755	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	645	Open in IMG/M
3300031681\|Ga0318572_10607904	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	651	Open in IMG/M
3300031682\|Ga0318560_10493542	Not Available	663	Open in IMG/M
3300031720\|Ga0307469_11884519	All Organisms → cellular organisms → Bacteria	579	Open in IMG/M
3300031736\|Ga0318501_10099515	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1448	Open in IMG/M
3300031744\|Ga0306918_10463077	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	991	Open in IMG/M
3300031748\|Ga0318492_10245003	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	925	Open in IMG/M
3300031751\|Ga0318494_10526508	All Organisms → cellular organisms → Bacteria	689	Open in IMG/M
3300031768\|Ga0318509_10282268	Not Available	928	Open in IMG/M
3300031768\|Ga0318509_10408314	All Organisms → cellular organisms → Bacteria	759	Open in IMG/M
3300031770\|Ga0318521_10816294	Not Available	569	Open in IMG/M
3300031781\|Ga0318547_10216796	Not Available	1147	Open in IMG/M
3300031781\|Ga0318547_10230792	All Organisms → cellular organisms → Bacteria	1112	Open in IMG/M
3300031794\|Ga0318503_10117587	All Organisms → cellular organisms → Bacteria → Proteobacteria	850	Open in IMG/M
3300031795\|Ga0318557_10020186	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2588	Open in IMG/M
3300031796\|Ga0318576_10573174	Not Available	532	Open in IMG/M
3300031798\|Ga0318523_10274145	Not Available	842	Open in IMG/M
3300031819\|Ga0318568_10844288	Not Available	567	Open in IMG/M
3300031819\|Ga0318568_10888170	Not Available	552	Open in IMG/M
3300031820\|Ga0307473_11513880	All Organisms → cellular organisms → Bacteria	509	Open in IMG/M
3300031846\|Ga0318512_10574679	All Organisms → cellular organisms → Bacteria	574	Open in IMG/M
3300031879\|Ga0306919_10148518	All Organisms → cellular organisms → Bacteria → Proteobacteria	1707	Open in IMG/M
3300031879\|Ga0306919_10507565	Not Available	929	Open in IMG/M
3300031879\|Ga0306919_11159761	Not Available	588	Open in IMG/M
3300031880\|Ga0318544_10158740	Not Available	869	Open in IMG/M
3300031893\|Ga0318536_10277704	Not Available	851	Open in IMG/M
3300031894\|Ga0318522_10178077	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	804	Open in IMG/M
3300031896\|Ga0318551_10302952	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	899	Open in IMG/M
3300031896\|Ga0318551_10766820	Not Available	560	Open in IMG/M
3300031910\|Ga0306923_10869870	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	989	Open in IMG/M
3300031910\|Ga0306923_11128501	All Organisms → cellular organisms → Bacteria → Proteobacteria	843	Open in IMG/M
3300031910\|Ga0306923_11517873	All Organisms → cellular organisms → Bacteria	700	Open in IMG/M
3300031912\|Ga0306921_10667217	All Organisms → cellular organisms → Bacteria → Proteobacteria	1197	Open in IMG/M
3300031912\|Ga0306921_10863731	Not Available	1029	Open in IMG/M
3300031912\|Ga0306921_11683127	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	686	Open in IMG/M
3300031941\|Ga0310912_10577149	All Organisms → cellular organisms → Bacteria → Proteobacteria	875	Open in IMG/M
3300031941\|Ga0310912_10862970	Not Available	697	Open in IMG/M
3300031941\|Ga0310912_11402714	Not Available	527	Open in IMG/M
3300031942\|Ga0310916_10882034	Not Available	751	Open in IMG/M
3300031942\|Ga0310916_10883725	All Organisms → cellular organisms → Bacteria → Proteobacteria	750	Open in IMG/M
3300031945\|Ga0310913_11008161	Not Available	583	Open in IMG/M
3300031946\|Ga0310910_10936565	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	678	Open in IMG/M
3300031947\|Ga0310909_10439169	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1095	Open in IMG/M
3300031954\|Ga0306926_11569543	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	756	Open in IMG/M
3300032025\|Ga0318507_10314690	Not Available	681	Open in IMG/M
3300032035\|Ga0310911_10175998	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1211	Open in IMG/M
3300032043\|Ga0318556_10489460	Not Available	643	Open in IMG/M
3300032044\|Ga0318558_10053808	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1788	Open in IMG/M
3300032051\|Ga0318532_10106458	Not Available	989	Open in IMG/M
3300032051\|Ga0318532_10171599	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	770	Open in IMG/M
3300032059\|Ga0318533_10226208	All Organisms → cellular organisms → Bacteria	1346	Open in IMG/M
3300032063\|Ga0318504_10180704	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	980	Open in IMG/M
3300032076\|Ga0306924_10432899	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhodovibrionaceae → Tistlia	1504	Open in IMG/M
3300032089\|Ga0318525_10251075	Not Available	909	Open in IMG/M
3300032089\|Ga0318525_10485837	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	632	Open in IMG/M
3300032094\|Ga0318540_10207601	Not Available	944	Open in IMG/M
3300032180\|Ga0307471_101136625	All Organisms → cellular organisms → Bacteria → Proteobacteria	946	Open in IMG/M
3300032261\|Ga0306920_100603029	All Organisms → cellular organisms → Bacteria	1624	Open in IMG/M
3300032261\|Ga0306920_102839815	Not Available	658	Open in IMG/M
3300032261\|Ga0306920_103110588	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	623	Open in IMG/M
3300033289\|Ga0310914_10851623	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	810	Open in IMG/M
3300033289\|Ga0310914_11054447	Not Available	713	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.17%
Host-Associated	Host-Associated	1.83%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	96.33%
Aquatic	Environmental → Aquatic	1.83%
Arthropoda	Host-Associated → Arthropoda	0.92%
Plants	Host-Associated → Plants	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	96.33%
Freshwater	Environmental → Aquatic → Freshwater	0.92%
Sediment	Environmental → Aquatic → Sediment	0.92%
Digestive System	Host-Associated → Arthropoda → Digestive System	0.92%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	89.91%
Loam	Environmental → Terrestrial → Soil → Loam	6.42%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.92%
Gut	Host-Associated → Arthropoda → Digestive System → Gut	0.92%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.92%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	74.31%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	12.84%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.67%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.75%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.75%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.92%
Unclassified	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	48.62%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	22.94%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	8.26%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.75%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.75%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.75%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.75%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.92%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.92%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.92%
Termite Gut	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut	0.92%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.92%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006047	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010162	Labiotermes labralis P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Lab288 P1 (version 2)	Host-Associated	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300027635	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031794	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0070699_1002917921	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	VVPSYVFAGVGGYYASKQSGLGGVFRRDAADGSDWKHALSEI
Ga0066654_108022052	3300005587	Soil	VAPSYVFAGIGGYYASKQGGLAGVFRCATSGTDVALSRPY*
Ga0066903_1012919671	3300005764	Tropical Forest Soil	VVPSCVFAGVGGYYASKQSGLAGVFRRAADGSDWKHAL
Ga0066903_1088587062	3300005764	Tropical Forest Soil	VVPSCVFAGLGGYYASKQSGLAGVFRRDAADGSDWKHALREIEAFTVFV
Ga0075024_1003306801	3300006047	Watersheds	VALSYVFAGVGGYYASKQGGLAGVFRCATDGTDWKHALSEIEAF
Ga0070712_1020254801	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	VVPSYIFAGVGGYYASKQGGLAGVFRGAADGSDWKHALSEIEAF
Ga0066653_103245633	3300006791	Soil	VAPSYVFADIGGYYASKQGGLAGVFRCATSGTDVALSRPY*
Ga0066660_111453882	3300006800	Soil	VTLSYVFAGVGGYYASKQGGLAGVFRCAADGTDWKHPLNEI
Ga0126380_105514541	3300010043	Tropical Forest Soil	VSSSYVFAGVGGYYASKQGGLAGVFRCANDATDWKHALSEI
Ga0126384_112744071	3300010046	Tropical Forest Soil	VFAGLGGYYASKQSGLAGVFRRDAADGSDWKHALSE
Ga0126373_108989622	3300010048	Tropical Forest Soil	VASSYVFAGVGGYYASKQGGLAGVFRYATDGSDWKHALSEIE
Ga0131853_108636703	3300010162	Termite Gut	MAQSYIYAGVGGYYASKDQGDLAGVFRGALGEGWTHPLSEREAFTVCVHP
Ga0126381_1013651071	3300010376	Tropical Forest Soil	VFAGVGGYYASKQGGLAGVFRYATDGSDWKHALSEIEAFTVF
Ga0137362_117736221	3300012205	Vadose Zone Soil	VFAGVGGYYASKQSGLAGVFCRDAADGSDWKHALSEIEAFTV
Ga0137377_101306151	3300012211	Vadose Zone Soil	MARSYVFAGVGGYYGSKQSGLAGVFCCATDDTNWKHALS
Ga0137386_109718302	3300012351	Vadose Zone Soil	VFAGVGGYYASKQSGLAGVFRCATDDSNWKHALSEIEAF
Ga0137361_111035401	3300012362	Vadose Zone Soil	VFAGVGGYYASKQSGLAGVFRRDAADGSDWKHALSEIEA
Ga0137396_112463462	3300012918	Vadose Zone Soil	VFAGVGGYYASKQGGLAGVFRCAANGTDWKHTLSEIEAFTVFLHPRDPNL
Ga0126375_118506331	3300012948	Tropical Forest Soil	VFTGVGGYYASKQSGLAGVFRRAADGSDWKHALSEIEAF
Ga0126369_100598023	3300012971	Tropical Forest Soil	VCSAGVGGYYASKQSGLAGVFRRAADGSDWKHALSEIE
Ga0126369_116964331	3300012971	Tropical Forest Soil	MVPSFVFAGVGGYYASKQSGLAGVFRRAADGSDWKHALS
Ga0132256_1030334351	3300015372	Arabidopsis Rhizosphere	VAQSYVFAGVGGYYASTEKGGKAGVFRRAADQSSWD
Ga0182041_107877381	3300016294	Soil	VVPSCVFAGVGGYYASKQSGLAGVFRRAADGSDWKHA
Ga0182041_110742621	3300016294	Soil	MVPSFVFAGVGGYYASKQSGLAGVFRRAADGSDWKH
Ga0182041_111925403	3300016294	Soil	MVPSCVFAGVGGYYASKQSGLAGVFRRAADGSDWKHAL
Ga0182033_118670392	3300016319	Soil	VVPSYVFAGVGGYYASKQSGLAGVFRRDAADGSDWK
Ga0182035_109260031	3300016341	Soil	VAPSYVFAGVGGYYANKQGGLAGVFRRATDDTNWKHALSEIEV
Ga0182032_118843142	3300016357	Soil	MARSCVLAGVGGYYASKQGGLAGVFRRSAEGSEWKHALSEI
Ga0182040_101549223	3300016387	Soil	VVPSCVFAGVGGYYASKQSGLAGVFRRAADGSDWK
Ga0182040_102795354	3300016387	Soil	VAPSDVFAGVGRYSASKQGGLAGVFRCAADGSDWKHALSEV
Ga0182039_111703472	3300016422	Soil	VSSSYVYAGVGGYYASKQGGLAGVFRCATDGTDWKHALSE
Ga0182038_105812173	3300016445	Soil	VAPSYVFAGVGGYYASKQGGLAGVFRCADATDWKHALSEIE
Ga0187804_102086381	3300018006	Freshwater Sediment	VALSYVFAGVGGYYASKQGGLAGVFRCATDGTDWKHALSE
Ga0210403_111383231	3300020580	Soil	VAPSYVFAGVGGYYASKQGGLAGVFRCATGGTDWKHALNEIETFTVF
Ga0210404_103837472	3300021088	Soil	MVPSYVFAGVGGYYASKQGGLAGVFRCAANGTDWKHALSEIEAFTVFL
Ga0210386_109382631	3300021406	Soil	VVPSYIFAGVGGYYASKQGGLAGVFRSAADGSDWKH
Ga0126371_121854252	3300021560	Tropical Forest Soil	VVPSCVFAGVGGYYASKQSGLAGVFRRDADDSDWKHALSEI
Ga0126371_136558422	3300021560	Tropical Forest Soil	VVPSCVFAGVGGYYASKQSGLAGVFRRAADGSDWKHALSE
Ga0207700_106001203	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	VALSYVFAAVGGYYASKQGGLAGVFRCATDGTDWKH
Ga0209625_10243711	3300027635	Forest Soil	VVPSYIFAGVGGYYASKQGGLAGVFRGAADGSDWKHAL
Ga0209465_100769021	3300027874	Tropical Forest Soil	VVSSCVFAGVGGYYASKQSGLAGVFRRAADDSDWKHALSEIEAF
Ga0318541_101929501	3300031545	Soil	VALSYVFAGVGGYYASKQGGLAGVFRYATDGTDWKHALSEIETFTSSSTRGI
Ga0318541_105351851	3300031545	Soil	VVPSCVFAGVGGYYASKQSGLAGVFRRAADGSDWKHALSEIE
Ga0318528_103714071	3300031561	Soil	VVPSYVFTGVGGYYASKQGGLAGVFRRATDGTDWKHALS
Ga0318573_102665501	3300031564	Soil	VVPSCVFAGVGGYYASKQSGLAGVFRRAADGRDWKH
Ga0310915_108231122	3300031573	Soil	MVPSCVFAGVGGYYASKQSGLAGVFRRAADGSDWKH
Ga0318542_106576081	3300031668	Soil	VAPSYVFAGVGGYYASKQSGLAGVFRCAADGSDWK
Ga0318574_106007551	3300031680	Soil	MVPSCVFAGVGGYYASKQSGLAGVFRRAADGSDWKHA
Ga0318572_106079041	3300031681	Soil	MVPSCVFAGVGGYYASKQSGLAGVFRRAADGSDWKHALS
Ga0318560_104935422	3300031682	Soil	VPWFPSCVFAGVGGYYASKQSGLAGVFRRAADGSDW
Ga0307469_118845192	3300031720	Hardwood Forest Soil	VVRSCVFAGVGGYYASKQSGLAGVFRRDAADGSDWKHALSE
Ga0318501_100995151	3300031736	Soil	MVPSFVFAGVGGYYASKQSGLAGVFRRAADGSDWKHALSE
Ga0306918_104630771	3300031744	Soil	VVPSCVFAGVGGYYASKQSGLAGVFRRDAADGSEWKHALSEIEAFT
Ga0318492_102450032	3300031748	Soil	MVPSFVFAGVGGYYASKQSGLAGVFRRAADGSDWK
Ga0318494_105265081	3300031751	Soil	VVPSCVFAGVGGYYASKQSGLAGVFRRAADGRDWKHALS
Ga0318509_102822682	3300031768	Soil	VVPSCVFAGVGGYYASKQSGLAGVFRRAADGRDWKHALSE
Ga0318509_104083143	3300031768	Soil	MVPSCVFAGVGGYYASKQSGLAGVFRRAADGSDWKHALSE
Ga0318521_108162942	3300031770	Soil	VASSYVFAGVGGYYASKQGGLAGVFRCATDGTDWKHALSDIEA
Ga0318547_102167961	3300031781	Soil	VAPSYVFAGVGGYYASKQGGLAGVFRCAADGSDWKHALSE
Ga0318547_102307923	3300031781	Soil	VVPSCVFAGVGGYYASKQSGLAGVFRRAADDSDWK
Ga0318503_101175871	3300031794	Soil	VVPSCVFAGIGGYYASKQSGLAGVFRRAADGSDWKHA
Ga0318557_100201861	3300031795	Soil	MVPSFVCAGVGGYYASKQSGLAGVFRRAADGSDWKHAL
Ga0318576_105731741	3300031796	Soil	VASSYVFAGVGGYYASKQGGLAGVFRYATDGTDWKHALSEIKTFIPI
Ga0318523_102741452	3300031798	Soil	VVPSCVFAGVGGYYASKQSGLAGVFRRAANGSDWKHALSE
Ga0318568_108442882	3300031819	Soil	VALSYVFAGVGGYYASKQGGLAGVFRYATDGTDWKHALSEIETFTSSSTRGIPISSSRVPLMASI
Ga0318568_108881702	3300031819	Soil	VAPSYVFAGVGGYYASKQGGLAGVFRCAADGSDWKHALSEVETFT
Ga0307473_115138801	3300031820	Hardwood Forest Soil	VVRSCVFAGVGGYYTSKQSGLAGVFRRAADDSDWKHALSEIEAF
Ga0318512_105746792	3300031846	Soil	VVPSYVFAGVGGYYASKQSGLAGVFRRDAADGSDWKHA
Ga0306919_101485183	3300031879	Soil	MARSCVLAGVGGYYASKQGGLAGVFRRSLEGSEWKHVLSEIEAFTV
Ga0306919_105075653	3300031879	Soil	VTQSYVFAGVGGYYASKQGGLAGVFRCSTDSGDWKHALSEVEAF
Ga0306919_111597613	3300031879	Soil	VAPSHVFAGVGGYYANKQDGLAGVFRCATDDTNWKHALSEIEVF
Ga0318544_101587402	3300031880	Soil	VASSYVFAGVGGYYASKQGGLAGVFRCAIDGTDWK
Ga0318536_102777041	3300031893	Soil	VALSYVFAGVGGYYASKQGGLAGVFRYATDGTDWKHALSEIETFT
Ga0318522_101780772	3300031894	Soil	VVPSCVFAGVGGYYASKQSGLAGVFRRAADGSEWK
Ga0318551_103029522	3300031896	Soil	MVPSFVFAGVGGYYASKQSGLAGVFRRAADGSDNM
Ga0318551_107668201	3300031896	Soil	VVSAHVFAGVGGYYASKQSGLAGVFRRATNGSDWK
Ga0306923_108698701	3300031910	Soil	VVPSCVFAGVGGYYASKQSGLAGVFRRAADGSDWKLALSEIEAFTV
Ga0306923_111285013	3300031910	Soil	VSPSYVFAGVGGYYASKQGGLAGVFRCAADGSDWKHAL
Ga0306923_115178732	3300031910	Soil	VSPSYVFAGVGGYYASKQGGLAGVFRCAADGSDWKHALS
Ga0306921_106672173	3300031912	Soil	VVASCVFAGVGGYYASKQSGLAGVFRRAADDSDWKH
Ga0306921_108637311	3300031912	Soil	VVPSCVFAGVGGYYASKQSGLAGVFRRAADGSDWKHALSKIE
Ga0306921_116831272	3300031912	Soil	MVPSCVFAGVGGYYASKQSGLAGVFRRAADGSDWKHALSEIEAF
Ga0310912_105771491	3300031941	Soil	VVPSYVFAGVGGYYASKQSGLAGVFRRDAADGSDWKHALSEIEAFTVF
Ga0310912_108629701	3300031941	Soil	VVPSCVFAGVGGYYASKQSGLAGVFRRAADGRDWKHALSEIEAF
Ga0310912_114027142	3300031941	Soil	VARSYVFAGVGGYYASKQGGLAGVFRCAADGSDWK
Ga0310916_108820341	3300031942	Soil	VAPSCVFAGVGGYYANKQGGFAGVFRRATDDTNWKHALSE
Ga0310916_108837251	3300031942	Soil	VAPSYVFAGVGGYYASKQGGLAGVFRCAAEGTDWKHALSEVETFTVFV
Ga0310913_110081611	3300031945	Soil	VVPSCVFAGVGGYYASKQSGLAGVFRRDAADGSDWKHALSEIEAFTV
Ga0310910_109365652	3300031946	Soil	MVPSCVFAGVGGYYASKQSGLAGVFRRAADGSDWKHALSEI
Ga0310909_104391692	3300031947	Soil	MVPSFVFAGVGGYYASKQSGLAGVFRRAADGSDWKHAL
Ga0306926_115695431	3300031954	Soil	MVPSCVFAGVGGYYASKQSGLAGVFRRAADDSDWKH
Ga0318507_103146901	3300032025	Soil	VASSYVFAGVGGYYASKQGGLAGVFRCAIDGTDWKH
Ga0310911_101759981	3300032035	Soil	VVPSCVFAGVGGYYASKQSGLAGVFRRDAADGSEWKH
Ga0318556_104894601	3300032043	Soil	VVPSCVFAGVGGYYASKQTGLAGVFRRAADGSDWKHT
Ga0318558_100538081	3300032044	Soil	VVSSCVLAGVGGYYASNQGGLAGVFRRGVDDADWK
Ga0318532_101064583	3300032051	Soil	VAPSYVFAGVGGYYASKQGGLAGVFRCAADGSDWKHALSEVET
Ga0318532_101715991	3300032051	Soil	VVPSCVFAGVGGYYASKQTGLAGVFRRAADGSDWKHTLSE
Ga0318533_102262082	3300032059	Soil	VVPSCVFAGVGGYYASKQSGLAGVFRRDAADGSDWKHALSEIEAFT
Ga0318504_101807041	3300032063	Soil	VVPSCVFAGVGGYYASKQSGLAGVFRRTADGSDWR
Ga0306924_104328992	3300032076	Soil	VASSYVFAGVGGYYAGKQDGLAGVFCRATDGTDWKHALSDIEVF
Ga0318525_102510751	3300032089	Soil	VVPSCVFAGVGGYYASKQSGLAGVFRRAADGRDWEHA
Ga0318525_104858371	3300032089	Soil	MVPSCVFAGVGGYYASKQSGLAGVFRRAADGSDWK
Ga0318540_102076011	3300032094	Soil	VVPSCVFAGVGGYYASKQSGLAGVFRRAADGRDWKHALSEIEP
Ga0307471_1011366251	3300032180	Hardwood Forest Soil	VTQSYVFAGVGGYYASKQGGLAGVFRCSTNSGDWKHA
Ga0306920_1006030293	3300032261	Soil	VVPSCVFAGVGGYYASKQSGLAGVFRRDAADGSDW
Ga0306920_1028398153	3300032261	Soil	VASSYVFAGVGGYYAIKQGGLAGVFRRATDGTDWKYALSDIE
Ga0306920_1031105881	3300032261	Soil	VAPSYVFAGVGGYYASKQGGLAGVFRCAADGSDWKHALSEV
Ga0310914_108516233	3300033289	Soil	VVPSCVFAGIGGYYASKQSGLAGVFRRAADGSDWK
Ga0310914_110544471	3300033289	Soil	VAPSDVFAGVGGYYASKQGGLAGVFRCAADGSDWKHALSEVETFTV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F089226

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences