Metagenome / Metatranscriptome Family F089241

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F089241
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	45 residues
Representative Sequence	IFGTDRVYFMRVNGNKLMVKSPGVIVPMTGATSVVEFELVKAD
Number of Associated Samples	94
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	5.66 %
% of genes near scaffold ends (potentially truncated)	82.57 %
% of genes from short scaffolds (< 2000 bps)	87.16 %
Associated GOLD sequencing projects	88
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.49

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (64.220 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (22.936 % of family members)
Environment Ontology (ENVO)	Unclassified (28.440 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (58.716 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 26.76% Coil/Unstructured: 73.24%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.49
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.49
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF01565	FAD_binding_4	28.44
PF13924	Lipocalin_5	3.67
PF13181	TPR_8	2.75
PF05598	DUF772	1.83
PF09265	Cytokin-bind	1.83
PF01527	HTH_Tnp_1	1.83
PF03401	TctC	0.92
PF04392	ABC_sub_bind	0.92
PF13359	DDE_Tnp_4	0.92
PF03734	YkuD	0.92
PF14827	dCache_3	0.92
PF00578	AhpC-TSA	0.92
PF02705	K_trans	0.92
PF07045	DUF1330	0.92
PF07238	PilZ	0.92
PF13174	TPR_6	0.92
PF16884	ADH_N_2	0.92
PF00872	Transposase_mut	0.92
PF01850	PIN	0.92
PF13546	DDE_5	0.92
PF04909	Amidohydro_2	0.92
PF04828	GFA	0.92
PF13371	TPR_9	0.92
PF01654	Cyt_bd_oxida_I	0.92
PF02667	SCFA_trans	0.92
PF01548	DEDD_Tnp_IS110	0.92
PF13676	TIR_2	0.92
PF06226	DUF1007	0.92
PF17200	sCache_2	0.92
PF00300	His_Phos_1	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG0277	FAD/FMN-containing lactate dehydrogenase/glycolate oxidase	Energy production and conversion [C]	1.83
COG1271	Cytochrome bd-type quinol oxidase, subunit 1	Energy production and conversion [C]	0.92
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	0.92
COG2031	Short chain fatty acids transporter	Lipid transport and metabolism [I]	0.92
COG2978	p-Aminobenzoyl-glutamate transporter AbgT	Coenzyme transport and metabolism [H]	0.92
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.92
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	0.92
COG3158	K+ uptake protein Kup	Inorganic ion transport and metabolism [P]	0.92
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.92
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	0.92
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.92
COG3683	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.92
COG3791	Uncharacterized conserved protein	Function unknown [S]	0.92
COG5470	Uncharacterized conserved protein, DUF1330 family	Function unknown [S]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	64.22 %
Unclassified	root	N/A	35.78 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	64.22 %
Unclassified	root	N/A	35.78 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	64.22 %
Unclassified	root	N/A	35.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.78 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	33.03 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	5.50 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.78 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	27.52 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	2.75 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.92 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.92 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.78 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	21.10 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.75 %
Candidatus Acidoferrales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales	0.92 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	0.92 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.92 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.92 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.92 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.78 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	16.51 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.75 %
Candidatus Acidoferrum	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum	0.92 %
unclassified Sphingomonadales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → unclassified Sphingomonadales	0.92 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	0.92 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.92 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.92 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.92 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.92 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.78 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	13.76 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.75 %
Sphingomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → unclassified Sphingomonadales → Sphingomonadales bacterium	0.92 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.92 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	0.92 %
Nitrobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter	0.92 %
Propionibacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae	0.92 %
Azorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Azorhizobium	0.92 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.92 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.92 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.78 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	13.76 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.75 %
Azorhizobium oxalatiphilum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Azorhizobium → Azorhizobium oxalatiphilum	0.92 %
unclassified Nitrobacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → unclassified Nitrobacter	0.92 %
Tessaracoccus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Tessaracoccus	0.92 %
Sphingomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → unclassified Sphingomonadales → Sphingomonadales bacterium	0.92 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.92 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	0.92 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.92 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.92 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.78 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	13.76 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.75 %
Nitrobacter sp. Nb-311A	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → unclassified Nitrobacter → Nitrobacter sp. Nb-311A	0.92 %
Tessaracoccus antarcticus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Tessaracoccus → Tessaracoccus antarcticus	0.92 %
Azorhizobium oxalatiphilum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Azorhizobium → Azorhizobium oxalatiphilum	0.92 %
Sphingomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → unclassified Sphingomonadales → Sphingomonadales bacterium	0.92 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.92 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	0.92 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.92 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.92 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459007\|GJ8XV2H01AXW24	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Tessaracoccus → Tessaracoccus antarcticus	510	Open in IMG/M
3300000567\|JGI12270J11330_10009175	All Organisms → cellular organisms → Bacteria	6688	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10145772	All Organisms → cellular organisms → Bacteria	571	Open in IMG/M
3300000890\|JGI11643J12802_11296451	Not Available	573	Open in IMG/M
3300001471\|JGI12712J15308_10081304	Not Available	821	Open in IMG/M
3300002245\|JGIcombinedJ26739_100168494	All Organisms → cellular organisms → Bacteria → Acidobacteria	2071	Open in IMG/M
3300004091\|Ga0062387_100943620	Not Available	656	Open in IMG/M
3300005541\|Ga0070733_11179192	All Organisms → cellular organisms → Bacteria → Proteobacteria	513	Open in IMG/M
3300005713\|Ga0066905_100994472	All Organisms → cellular organisms → Bacteria	739	Open in IMG/M
3300005764\|Ga0066903_100315343	All Organisms → cellular organisms → Bacteria	2491	Open in IMG/M
3300005764\|Ga0066903_101938111	Not Available	1130	Open in IMG/M
3300005764\|Ga0066903_103011505	Not Available	913	Open in IMG/M
3300005764\|Ga0066903_106551011	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	606	Open in IMG/M
3300006175\|Ga0070712_101459929	All Organisms → cellular organisms → Bacteria	597	Open in IMG/M
3300006176\|Ga0070765_101951152	Not Available	550	Open in IMG/M
3300006755\|Ga0079222_12267306	Not Available	541	Open in IMG/M
3300009094\|Ga0111539_12891288	All Organisms → cellular organisms → Bacteria	556	Open in IMG/M
3300010043\|Ga0126380_10426871	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	994	Open in IMG/M
3300010046\|Ga0126384_11895839	All Organisms → cellular organisms → Bacteria	568	Open in IMG/M
3300010048\|Ga0126373_12628850	All Organisms → cellular organisms → Bacteria	561	Open in IMG/M
3300010159\|Ga0099796_10269587	Not Available	713	Open in IMG/M
3300010343\|Ga0074044_10009528	All Organisms → cellular organisms → Bacteria → Proteobacteria	7501	Open in IMG/M
3300010343\|Ga0074044_10207653	Not Available	1300	Open in IMG/M
3300010359\|Ga0126376_10301099	All Organisms → cellular organisms → Bacteria	1394	Open in IMG/M
3300010359\|Ga0126376_12097506	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Azorhizobium → Azorhizobium oxalatiphilum	609	Open in IMG/M
3300010360\|Ga0126372_11633253	Not Available	684	Open in IMG/M
3300010361\|Ga0126378_10852128	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1019	Open in IMG/M
3300010362\|Ga0126377_11883205	Not Available	674	Open in IMG/M
3300010362\|Ga0126377_12875935	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	555	Open in IMG/M
3300010362\|Ga0126377_12922316	All Organisms → cellular organisms → Bacteria	551	Open in IMG/M
3300010366\|Ga0126379_10950922	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	963	Open in IMG/M
3300010398\|Ga0126383_12215637	All Organisms → cellular organisms → Bacteria	636	Open in IMG/M
3300010398\|Ga0126383_13669996	Not Available	501	Open in IMG/M
3300010400\|Ga0134122_11647758	All Organisms → cellular organisms → Bacteria	667	Open in IMG/M
3300010868\|Ga0124844_1153499	Not Available	868	Open in IMG/M
3300011120\|Ga0150983_11887247	Not Available	549	Open in IMG/M
3300012159\|Ga0137344_1006578	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1646	Open in IMG/M
3300012177\|Ga0153943_1106242	Not Available	600	Open in IMG/M
3300012361\|Ga0137360_10456147	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1084	Open in IMG/M
3300012582\|Ga0137358_10841915	Not Available	606	Open in IMG/M
3300012917\|Ga0137395_10604554	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → unclassified Sphingomonadales → Sphingomonadales bacterium	792	Open in IMG/M
3300012971\|Ga0126369_11989455	All Organisms → cellular organisms → Bacteria	669	Open in IMG/M
3300014968\|Ga0157379_12174434	Not Available	551	Open in IMG/M
3300015371\|Ga0132258_10635180	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2684	Open in IMG/M
3300015374\|Ga0132255_101229131	Not Available	1129	Open in IMG/M
3300016270\|Ga0182036_10190108	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1497	Open in IMG/M
3300016270\|Ga0182036_11262260	All Organisms → cellular organisms → Bacteria	615	Open in IMG/M
3300016270\|Ga0182036_11292190	All Organisms → cellular organisms → Bacteria → Acidobacteria	608	Open in IMG/M
3300016294\|Ga0182041_11369891	All Organisms → cellular organisms → Bacteria	649	Open in IMG/M
3300016319\|Ga0182033_10407908	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1150	Open in IMG/M
3300016357\|Ga0182032_10387700	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1127	Open in IMG/M
3300016387\|Ga0182040_10229780	Not Available	1382	Open in IMG/M
3300016750\|Ga0181505_10700902	All Organisms → cellular organisms → Bacteria	674	Open in IMG/M
3300017966\|Ga0187776_10128548	All Organisms → cellular organisms → Bacteria	1538	Open in IMG/M
3300017970\|Ga0187783_11222660	Not Available	541	Open in IMG/M
3300017970\|Ga0187783_11244884	All Organisms → cellular organisms → Bacteria	536	Open in IMG/M
3300018089\|Ga0187774_10087768	Not Available	1499	Open in IMG/M
3300020170\|Ga0179594_10179369	Not Available	790	Open in IMG/M
3300020580\|Ga0210403_10642703	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	854	Open in IMG/M
3300021180\|Ga0210396_10208379	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1745	Open in IMG/M
3300021377\|Ga0213874_10014920	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2040	Open in IMG/M
3300021403\|Ga0210397_10106493	All Organisms → cellular organisms → Bacteria → Proteobacteria	1902	Open in IMG/M
3300021404\|Ga0210389_10199425	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1561	Open in IMG/M
3300021439\|Ga0213879_10113018	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	769	Open in IMG/M
3300021475\|Ga0210392_11518131	Not Available	501	Open in IMG/M
3300021477\|Ga0210398_10630884	Not Available	869	Open in IMG/M
3300025588\|Ga0208586_1013497	All Organisms → cellular organisms → Bacteria	2052	Open in IMG/M
3300025915\|Ga0207693_10077140	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2609	Open in IMG/M
3300027783\|Ga0209448_10194015	Not Available	674	Open in IMG/M
3300027787\|Ga0209074_10469402	Not Available	541	Open in IMG/M
3300027854\|Ga0209517_10004206	All Organisms → cellular organisms → Bacteria	19054	Open in IMG/M
3300027854\|Ga0209517_10577893	All Organisms → cellular organisms → Bacteria → Proteobacteria	599	Open in IMG/M
3300027903\|Ga0209488_10108286	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2086	Open in IMG/M
3300027911\|Ga0209698_11047351	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	607	Open in IMG/M
3300028704\|Ga0307321_1013168	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1412	Open in IMG/M
3300028716\|Ga0307311_10014738	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1897	Open in IMG/M
3300028754\|Ga0307297_10137939	Not Available	825	Open in IMG/M
3300031474\|Ga0170818_106064630	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	582	Open in IMG/M
3300031543\|Ga0318516_10246958	Not Available	1032	Open in IMG/M
3300031546\|Ga0318538_10413359	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	730	Open in IMG/M
3300031561\|Ga0318528_10519974	All Organisms → cellular organisms → Bacteria	639	Open in IMG/M
3300031561\|Ga0318528_10625120	All Organisms → cellular organisms → Bacteria	577	Open in IMG/M
3300031573\|Ga0310915_10516391	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	848	Open in IMG/M
3300031680\|Ga0318574_10734198	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	579	Open in IMG/M
3300031715\|Ga0307476_10316860	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → unclassified Nitrobacter → Nitrobacter sp. Nb-311A	1145	Open in IMG/M
3300031763\|Ga0318537_10277834	All Organisms → cellular organisms → Bacteria	620	Open in IMG/M
3300031765\|Ga0318554_10528271	All Organisms → cellular organisms → Bacteria	667	Open in IMG/M
3300031796\|Ga0318576_10264457	Not Available	812	Open in IMG/M
3300031823\|Ga0307478_11794538	Not Available	504	Open in IMG/M
3300031890\|Ga0306925_10209608	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	2102	Open in IMG/M
3300031890\|Ga0306925_10517094	All Organisms → cellular organisms → Bacteria → Proteobacteria	1270	Open in IMG/M
3300031897\|Ga0318520_10087829	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1722	Open in IMG/M
3300031912\|Ga0306921_10844109	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1043	Open in IMG/M
3300031941\|Ga0310912_10423072	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1038	Open in IMG/M
3300031942\|Ga0310916_10205002	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1651	Open in IMG/M
3300031946\|Ga0310910_11158603	Not Available	601	Open in IMG/M
3300032042\|Ga0318545_10315776	All Organisms → cellular organisms → Bacteria	562	Open in IMG/M
3300032054\|Ga0318570_10479164	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	568	Open in IMG/M
3300032091\|Ga0318577_10526830	Not Available	563	Open in IMG/M
3300032160\|Ga0311301_12287084	Not Available	616	Open in IMG/M
3300033289\|Ga0310914_11176291	Not Available	668	Open in IMG/M
3300033289\|Ga0310914_11891659	All Organisms → cellular organisms → Bacteria	501	Open in IMG/M
3300033290\|Ga0318519_10551393	Not Available	697	Open in IMG/M
3300033813\|Ga0364928_0020816	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1311	Open in IMG/M
3300033887\|Ga0334790_116809	All Organisms → cellular organisms → Bacteria	842	Open in IMG/M
3300034817\|Ga0373948_0137052	Not Available	603	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	93.58%
Host-Associated	Host-Associated	6.42%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	88.07%
Aquatic	Environmental → Aquatic	5.50%
Plants	Host-Associated → Plants	5.50%
Fungi	Host-Associated → Fungi	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	85.32%
Freshwater	Environmental → Aquatic → Freshwater	2.75%
Sediment	Environmental → Aquatic → Sediment	2.75%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.75%
Peat	Environmental → Terrestrial → Peat	1.83%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.83%
Floodplain	Environmental → Terrestrial → Floodplain	0.92%
Roots	Host-Associated → Plants → Roots	0.92%
Mycelium	Host-Associated → Fungi → Mycelium	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	68.81%
Loam	Environmental → Terrestrial → Soil → Loam	11.01%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	5.50%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.75%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.75%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.83%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.92%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.92%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.92%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	35.78%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	28.44%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	9.17%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	5.50%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	2.75%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.75%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.83%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.83%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.83%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.92%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.92%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	22.94%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	12.84%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.17%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.50%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	5.50%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	4.59%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	3.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.75%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.75%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.83%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.83%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.83%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.83%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	1.83%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.83%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.83%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.92%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.92%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.92%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	0.92%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.92%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.92%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.92%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.92%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	0.92%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.92%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	0.92%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.92%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.92%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459007	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect in plug lysis (for fosmid construction) 10-21cm	Environmental	Open in IMG/M
3300000567	Peat soil microbial communities from Weissenstadt, Germany - SII-2010	Environmental	Open in IMG/M
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300001471	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009523	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010868	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (PacBio error correction)	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012159	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT500_2	Environmental	Open in IMG/M
3300012177	Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ027 MetaG	Host-Associated	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016750	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018089	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_20_MG	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021377	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7	Host-Associated	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021439	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R03	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300025588	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-3 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300027783	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028704	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_379	Environmental	Open in IMG/M
3300028716	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_198	Environmental	Open in IMG/M
3300028754	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_157	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300032042	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M
3300033813	Sediment microbial communities from East River floodplain, Colorado, United States - 30_j17	Environmental	Open in IMG/M
3300033887	Peat soil microbial communities from Stordalen Mire, Sweden - 713 P-1-X1	Environmental	Open in IMG/M
3300034817	Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_1	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
L02_01044150	2170459007	Grass Soil	HVDAASSQAIFDTDRVYFIRVDGNKMMVKSPGVIVPMTGATSIVEFELVKAD
JGI12270J11330_100091758	3300000567	Peatlands Soil	VQQRLTAHVDTASSQALTGTERVYFMRVEGNRLTMKSPGVIVPMTGKTSIVEIELVKAD*
AF_2010_repII_A1DRAFT_101457722	3300000597	Forest Soil	TARVDAASSQAIFGTDRVYFMRVDGNKLMVKSPGVIVPMTGATSVVEFELLKAD*
JGI11643J12802_112964511	3300000890	Soil	SSQAIFDTDRVYFIRVDGSKMMVKSPGVIVPMTGATSIVEFELVKSD*
JGI12712J15308_100813041	3300001471	Forest Soil	AIFNTDRVYFLRRDGDKMIVKSPGVIVPMTGATSIVEFELVKAD*
JGIcombinedJ26739_1001684941	3300002245	Forest Soil	KLTAHVDTASSQAITGTERVYFMRVEGNRLTMKSPGVIVPMTGKTSIVEIELVKAD*
Ga0062387_1009436201	3300004091	Bog Forest Soil	DRVYFMRINDKKLMVKSPGVVVPMTGATSVVEFELVKAD*
Ga0070733_111791922	3300005541	Surface Soil	VYFIRIAGNKMTVKSPGVIVPMTGKTSVVEFELVKAD*
Ga0066905_1009944722	3300005713	Tropical Forest Soil	GTDRVYFMRVNGNKLMVKSPGVIVPMTGATSVVEFELVKAD*
Ga0066903_1003153432	3300005764	Tropical Forest Soil	MRVEGNKLRVKSPGVVVPMTGATSVVEFDLVRAE*
Ga0066903_1019381111	3300005764	Tropical Forest Soil	AINNTDRVYFMRVNGNKLTVKSPGVINPATGAIIVIEGEHVKVD*
Ga0066903_1030115052	3300005764	Tropical Forest Soil	RVDAASSEAINNTDRVYFIRATGDRLLFKSPGVIVPMTGATSVVEFEMVKAN*
Ga0066903_1065510112	3300005764	Tropical Forest Soil	MRVNGNKLMVKSPGVIVPMTGATSVVEFELVKTD*
Ga0075019_111563621	3300006086	Watersheds	GLEVTARVDTASSPALPGTNRVYFMKVVGAKLTMKSPGVIEPMTGVTSALVIELLRAD*
Ga0070712_1014599292	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	ERDGIKMTAHVDIASSQAITGSDRVYFMRVEGNKLMMKSPGVVVPMTGRNKRR*
Ga0070765_1019511521	3300006176	Soil	ADRVFFIRVEDNRLVMKSPGVVVPMTGATSSVEIELVQAD*
Ga0079222_122673062	3300006755	Agricultural Soil	MAIKVTAHVDAASSQAITGNDRVYFMRLDGNKLTVKSPGVVVPMTGATSIVEFDL*
Ga0111539_128912881	3300009094	Populus Rhizosphere	AIFDTDRVYFIRVDGNKMMVKSPSVIVPMTGATSIVEFELVKSD*
Ga0116221_10818831	3300009523	Peatlands Soil	GLKATARVDTASNPALPGTDRVYFMKVEGNKLTMKSPGVIEPMTGVTSALVIELVKAD*
Ga0126380_104268711	3300010043	Tropical Forest Soil	VYFMRVDGNKLMVKSPGVIVPMTGATSVVEFELMKAD*
Ga0126384_118958392	3300010046	Tropical Forest Soil	DRVYFMRIDGNKLMVKSPGVIVPMTGATSVVEFELVKVD*
Ga0126373_126288502	3300010048	Tropical Forest Soil	AASSQAIFGTDRVYFMRVDGNKSPGVIVPMTGATSVVEFELVKAD*
Ga0099796_102695871	3300010159	Vadose Zone Soil	LPVDAASSEAINNTDRVYLMRVDGKKLTVKSPGVIVPMTGATSVVEIELVKAD*
Ga0074044_1000952812	3300010343	Bog Forest Soil	QAIFDTDRVYVIRVTGNKMIVKSPGVIVPMTGKTSVVEFELVKAD*
Ga0074044_102076532	3300010343	Bog Forest Soil	QAIFDTDRVYVIRVTGNKMIVKSPGVIVPMTGKTSVVEFELVKSD*
Ga0126376_103010993	3300010359	Tropical Forest Soil	RVYFMRVDGNKLVVKSPGVIVPMTGATSIVEFELVKAD*
Ga0126376_120975062	3300010359	Tropical Forest Soil	MRVEGNKLVAKSPGVIVPMTGAKSVVEFELVKAD*
Ga0126372_116332532	3300010360	Tropical Forest Soil	SSQAIAGTDRVYFMRVDGNKLVVKSPGVIVPMTGATSVVEFELVKAD*
Ga0126378_108521282	3300010361	Tropical Forest Soil	RVYFMRVDGNKLMVKSPGVIVPMTGATSVVEFELVKAD*
Ga0126377_118832052	3300010362	Tropical Forest Soil	VDASSSQAIFDTDRVFLIRVDGNKMMVKSPGVLVPMTGAISVVEFDLMKAD*
Ga0126377_128759351	3300010362	Tropical Forest Soil	DGLKVIARVYTASSQAITGSDRVYFIRVEGDKLQVKSPSDVGPMTGATSVVEFDLVKAE*
Ga0126377_129223162	3300010362	Tropical Forest Soil	VYFMRVNGNKLMVKSPGVIVPMTGATSVVEFELVKAD*
Ga0126379_109509221	3300010366	Tropical Forest Soil	GTDRVYFMRVNGDKLMVKSPGVIVPMTGATSVVEFELVKAD*
Ga0126383_122156372	3300010398	Tropical Forest Soil	IFGTDRVYFMRIDGNKLMVKSPGVIVPMTGATSVVEFELVKAD*
Ga0126383_136699961	3300010398	Tropical Forest Soil	YFMRIDGNKLMVKSPGVIVPMTGATSVVEFELVKVD*
Ga0134122_116477582	3300010400	Terrestrial Soil	VYSIQVNGNKMVVKGTVTVPMTGQKSIVEFDLVKSD*
Ga0124844_11534992	3300010868	Tropical Forest Soil	RVYFVRVDGNKLMVKSPGVIVPMTGATSVVEFELVKAD*
Ga0150983_118872471	3300011120	Forest Soil	LKATARVDSASSPALPGTDRVYFMKVVGNKLTMKSPGVIEPMTGVTSALVIELVKAD*
Ga0137344_10065781	3300012159	Soil	RVYLIRVDGNKMMVKSPGVIVPMTGTTSVVEFDCVRAD*
Ga0153943_11062421	3300012177	Attine Ant Fungus Gardens	LTAHVDAASSQAIFATDRVYLMRVNGNKMTVKSQGAIVPMTGATSVVEFELVKDD*
Ga0137360_104561473	3300012361	Vadose Zone Soil	RVNGNKLLVKSPGVIVPMTGSTSVVEFEMLKADSGP*
Ga0137358_108419151	3300012582	Vadose Zone Soil	FMRVNGNKLLVKSPGVIVPMTGATSVVEFEMVKAE*
Ga0137395_106045542	3300012917	Vadose Zone Soil	YFMRVNGNKLLVKSPGVIVPMTGSTSVVEFEMLKADSGP*
Ga0126369_119894552	3300012971	Tropical Forest Soil	DAASSQAIFGTDRVYFMRIDGNKLMVKSPGVIVPMTGATSVVEFELVKVD*
Ga0157379_121744341	3300014968	Switchgrass Rhizosphere	MEPGHLWLDRVYFVRVNGNKMMVKSPGVIVPMTGATSVVEFELVKAD*
Ga0132258_106351801	3300015371	Arabidopsis Rhizosphere	VDAASSQAIFDTDRVYFIRVDNNKMTVTGRVVVPMSGATSIVEFELEKAE*
Ga0132255_1012291311	3300015374	Arabidopsis Rhizosphere	VKIFDTDRVYFIRVDGNKMMVKSPGVIVPMTGATSIVEFELVKAD*
Ga0182036_101901081	3300016270	Soil	IFGTDRVYFMRVNGNKLMVKSPGVIVPMTGATSVVEFELVKAD
Ga0182036_112622602	3300016270	Soil	VYFMRIDGNKLMVKSPGVIVPMTGATSVVEFELVKAD
Ga0182036_112921902	3300016270	Soil	FGTDRVYFMRLDGNKLVVKSPGVIVPMTGATSVVEFELVKAD
Ga0182041_113698912	3300016294	Soil	FGTDRVYFMRIDGNKLMVKSPGVIVPMTGATSVVEFELVKAD
Ga0182033_104079081	3300016319	Soil	ASSQAIFGTDRVYFMRIDGNKLMVKSPGVIVPMTGATSVVEFELVKVD
Ga0182032_103877001	3300016357	Soil	YFMRVNGNKLMVKSPGVIVPMTGATSVVEFELVKAD
Ga0182040_102297801	3300016387	Soil	QAIFDTDRVYFIWVNGNKMMVKGTVTVPMTGQKSIVEFDLVKSD
Ga0181505_107009021	3300016750	Peatland	AIFGTDRVYFVRVNGNEMTMKSPGVIVPMTGQTSVVEFDLVRSD
Ga0187776_101285481	3300017966	Tropical Peatland	LTGTNRVYFVRVDGNKLIVKSPSVFVPATGQTSVVELEFVKTD
Ga0187783_112226601	3300017970	Tropical Peatland	VDAASSQAIFDTDRVYFIRVNGNKMMVKGNVIVPMTGQTSVVEFELVKSD
Ga0187783_112448842	3300017970	Tropical Peatland	SSQAIAGNERVYFMRVEGSKLTVKSPGVVVPMTGAISVVEFELVKSE
Ga0187774_100877681	3300018089	Tropical Peatland	VYFVRVNGNKLIVKSPSVFVPATGQTSVVELEFVKTD
Ga0179594_101793692	3300020170	Vadose Zone Soil	DRVYIMRVNGNKLTVKSPGVIVPMTGATSIVEFELVKAD
Ga0210403_106427032	3300020580	Soil	KITVHVDAAPSQAITGMDRPYFVRVDGSKAVFKSPGVIVPMTGAMSVVEFEMVKADY
Ga0210396_102083793	3300021180	Soil	TDRVYFFRRDGDKMIVKSPGVIVPMTGATSIVEFELVKAD
Ga0213874_100149203	3300021377	Plant Roots	IFDTDRVYFIRVDGNKMTVKSPGVIVPMTGQMNVVEFELVKSE
Ga0210397_101064932	3300021403	Soil	RVYFLRRYGDKMIVKSPGVIVPMTGATSIVEFELVKAD
Ga0210389_101994251	3300021404	Soil	YFLRRDGDKMIVKSPGVIVPMTGATSIVEFELVKAD
Ga0213879_101130181	3300021439	Bulk Soil	YFIRVDGNKMMVKGSVIVPMTGQTSIVEFELVKSD
Ga0210392_115181312	3300021475	Soil	YFIRVNDNKLMVKSPGVIVPMTGQTSIVEFDLVKSD
Ga0210398_106308843	3300021477	Soil	TAHVDTASSQAITGTERVYFMRVEGNRLTMKSPGVIVPMTGKTSIVEIELVKAD
Ga0208586_10134972	3300025588	Arctic Peat Soil	LTAHVDTVSSQAITGNDRVYFMRVEGNKLNVKSPGVIVPMTGKKSVVEFDLVKAD
Ga0207693_100771405	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	ITGDERVFFIRVEDNRLVMKSPGVVVPMTGATSSVEIELVQAD
Ga0209448_101940151	3300027783	Bog Forest Soil	DRVYFMRINDKKLMVKSPGVVVPMTGATSVVEFELVKAD
Ga0209074_104694022	3300027787	Agricultural Soil	MAIKVTAHVDAASSQAITGNDRVYFMRLDGNKLTVKSPGVVVPMTGATSIVEFDL
Ga0209517_100042065	3300027854	Peatlands Soil	VQQRLTAHVDTASSQALTGTERVYFMRVEGNRLTMKSPGVIVPMTGKTSIVEIELVKAD
Ga0209517_105778932	3300027854	Peatlands Soil	ASSQAITGTDRVYFMRVDGNKLMMKSPGVIVPMTGATSVVEIELVKAD
Ga0209488_101082862	3300027903	Vadose Zone Soil	LPVDAASSEAINNTDRVYLMRVDGKKLTVKSPGVIVPMTGATSVVEIELVKAD
Ga0209698_110473511	3300027911	Watersheds	KLTAHVDAASSQAIFDTDRIYFIRVDNNKMTVTGRVVVPMTGATSIVEFELVYASDERRL
Ga0307321_10131681	3300028704	Soil	MEGAARLDKMMVKSPGVIVPMTGATSIVEFELVKDD
Ga0307311_100147384	3300028716	Soil	EGAARLDKMMVKSPGVIVPMTGATSIVEFELVKDD
Ga0307297_101379392	3300028754	Soil	LTARVDAASSQAIFDTDRVYFIRFDGNKMMVKSPSVIVPMTGATSIVEFELVKAD
Ga0311338_118613191	3300030007	Palsa	GLKATARVDTASSPALPGTDRVYFMKVEGGKLTMKSPGVIEPMTGITSALVIELAKAD
Ga0170818_1060646302	3300031474	Forest Soil	SSQVIFDTDRIYSIRIDNNKMTATGKVVVPMTGATSIVEFELVKAD
Ga0318516_102469582	3300031543	Soil	LTARVDAASSQAIFGTDRVYFMRIDGNKLMVKSPGVIVPMTGATSVVEFELVKVD
Ga0318538_104133592	3300031546	Soil	TDRVYFIRVNGNEMMVKGTVTVPMTGQKSIVEFALVKSD
Ga0318528_105199742	3300031561	Soil	VYFMRLDGNKLVVKSPGVIVPMTGATSVVEFELVKAD
Ga0318528_106251202	3300031561	Soil	SSQAIFGTDRVYFMRLDGNKLMVKSPGVIVPMTGATSVVEFELVKAD
Ga0310915_105163912	3300031573	Soil	FMRVNGNKLMVKSPGVIVPMTGATSVVEFELVKAD
Ga0318574_107341982	3300031680	Soil	RVYFMRVDGNKLMAKSPGVIVPMTGATSVVEFELVKAD
Ga0307476_103168602	3300031715	Hardwood Forest Soil	FIRVDGDKMKVKSPGVIVPMTGATSIVEFELVKAD
Ga0318537_102778341	3300031763	Soil	DRVYFMRIDGNKLMVKSPGVIVPMTGATSVVEFELVKAD
Ga0318554_105282711	3300031765	Soil	AIFGTDRVYFMRIDGNKLMVKSPGVIVPMTGATSVVEFELVKAD
Ga0318576_102644571	3300031796	Soil	RVYFMRVDGDKLTVKSPGVVVPVTGATSVVEFELVKTE
Ga0307478_117945382	3300031823	Hardwood Forest Soil	FNTDRVYFLRRDGDKMIVKSPGVIVPMTGATSIVEFELVKAD
Ga0306925_102096081	3300031890	Soil	FMHVDGNKLTVKSPGVVVPVTGAISVIEFELIRAQ
Ga0306925_105170943	3300031890	Soil	ASNQAIFDSDRVYFIRVHGNKMMVKSPGVIMTGQTSVVEFELVKAD
Ga0318520_100878292	3300031897	Soil	LTARVDAASSQAIFGTDRVYFMRIDGNKLMVKSPGVIVPMTGATSVVEFELVKAD
Ga0306921_108441091	3300031912	Soil	VYFMRIDGNKLMVKSPGVIVPMTGATSVVEFELVKVD
Ga0310912_104230721	3300031941	Soil	SSQAIFDTDRVYFIWVNGNKMMVKGTVTVPMTGQKSIVEFDLVKSN
Ga0310916_102050022	3300031942	Soil	AIFGTDRVYFMRVNGNKLMVKSPGVIVPMTGATSVVEFELVKAD
Ga0310910_111586031	3300031946	Soil	AHVDAASSQTIFDTDRVYFIRVNGNEMMVKGTVTVPMTGQKSIVEFALVKSD
Ga0318545_103157761	3300032042	Soil	AASSQAIFGTDRVYFMRIDGNKLMVKSPGVIVPMTGATSVVEFELVKAD
Ga0318570_104791641	3300032054	Soil	FMRLDGNKLVVKSPGVIVPMTGATSVVEFELVKAD
Ga0318577_105268302	3300032091	Soil	HVDAASSQAIVGNDRIYFVRVRGNKITFKSPGVIVPMTGKTSVVEFEMTRSQ
Ga0311301_122870841	3300032160	Peatlands Soil	ASSQAIFDTDRVYFVRVNGNKMMVKSPGVIVPMTGQTSVVEFDLVKAD
Ga0310914_111762913	3300033289	Soil	AIFDTDRVYFIWVNGNKMMVKGTVTVPMTGQKSIVEFDLVKSD
Ga0310914_118916591	3300033289	Soil	VDAASSQAIFGTDRVYFMRLDGNKLMVKSPGVIVPMTGATSVVEFELVKAD
Ga0318519_105513932	3300033290	Soil	RVYFMRLDGNKLVVKSPGVIVPMTGATSVVEFELVKAD
Ga0364928_0020816_1198_1311	3300033813	Sediment	VYFIRVDGNKMMVKSPGVIVPMTGATSIVEFELVKAD
Ga0334790_116809_1_162	3300033887	Soil	AHVDAASSQAIFDTDRVYFIRVEGNKMTVKSPGVIVPMTGATSIVEFELVKAD
Ga0373948_0137052_78_215	3300034817	Rhizosphere Soil	VKIFDTDRVYFIRVDGNKMMVKSPGVIVPMTGATSIVEFELVKAD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F089241

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences