Metagenome / Metatranscriptome Family F089260

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F089260
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	96 residues
Representative Sequence	MPATDIIIIAVAILAFGAYLGFVAVVSLGIRHEESLFRERRRLAEEESIMLGRPVPYRGFMDTAPGLVSHGARALTGLRVRRDRSADPRAVPEYERQH
Number of Associated Samples	78
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	85.19 %
% of genes near scaffold ends (potentially truncated)	33.94 %
% of genes from short scaffolds (< 2000 bps)	82.57 %
Associated GOLD sequencing projects	71
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.40

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (53.211 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (29.358 % of family members)
Environment Ontology (ENVO)	Unclassified (40.367 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (55.963 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 47.62% β-sheet: 0.00% Coil/Unstructured: 52.38%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.40
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.40
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF07702	UTRA	19.44
PF00392	GntR	12.04
PF11941	DUF3459	2.78
PF13673	Acetyltransf_10	0.93
PF00583	Acetyltransf_1	0.93
PF01717	Meth_synt_2	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG0620	Methionine synthase II (cobalamin-independent)	Amino acid transport and metabolism [E]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	53.21 %
Unclassified	root	N/A	46.79 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	53.21 %
Unclassified	root	N/A	46.79 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	53.21 %
Unclassified	root	N/A	46.79 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	52.29 %
Unclassified	root	N/A	46.79 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	52.29 %
Unclassified	root	N/A	46.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.79 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	43.12 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.79 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	11.93 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	1.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.79 %
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	7.34 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.83 %
Nocardiopsaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.79 %
Actinomadura	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	1.83 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.83 %
Thermomonospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Thermomonospora	0.92 %
Nocardiopsis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae → Nocardiopsis	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.79 %
Actinomadura	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	1.83 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.83 %
Nocardiopsis alba	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae → Nocardiopsis → Nocardiopsis alba	0.92 %
Thermomonospora curvata	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Thermomonospora → Thermomonospora curvata	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2166559006\|FI_contig18101	Not Available	748	Open in IMG/M
3300000956\|JGI10216J12902_108391415	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1121	Open in IMG/M
3300004479\|Ga0062595_100048445	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1922	Open in IMG/M
3300004633\|Ga0066395_10446394	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	737	Open in IMG/M
3300004633\|Ga0066395_10477916	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae → Nocardiopsis → Nocardiopsis alba	715	Open in IMG/M
3300005332\|Ga0066388_100244181	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2433	Open in IMG/M
3300005332\|Ga0066388_101273916	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1264	Open in IMG/M
3300005436\|Ga0070713_102392134	Not Available	511	Open in IMG/M
3300005437\|Ga0070710_10532039	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	809	Open in IMG/M
3300005467\|Ga0070706_100088839	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2865	Open in IMG/M
3300005468\|Ga0070707_100743380	Not Available	944	Open in IMG/M
3300005764\|Ga0066903_100100204	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	3909	Open in IMG/M
3300005764\|Ga0066903_100164074	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3229	Open in IMG/M
3300005764\|Ga0066903_101308956	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1354	Open in IMG/M
3300005764\|Ga0066903_103837290	Not Available	807	Open in IMG/M
3300005764\|Ga0066903_104267846	Not Available	764	Open in IMG/M
3300005764\|Ga0066903_106085596	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	631	Open in IMG/M
3300006050\|Ga0075028_100685199	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	616	Open in IMG/M
3300006175\|Ga0070712_100754501	All Organisms → cellular organisms → Bacteria	833	Open in IMG/M
3300006804\|Ga0079221_10025271	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	2462	Open in IMG/M
3300006804\|Ga0079221_11088414	Not Available	610	Open in IMG/M
3300006852\|Ga0075433_10026275	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Thermomonospora → Thermomonospora curvata	4928	Open in IMG/M
3300006904\|Ga0075424_101968720	Not Available	617	Open in IMG/M
3300009792\|Ga0126374_10655435	Not Available	783	Open in IMG/M
3300009792\|Ga0126374_10925521	Not Available	678	Open in IMG/M
3300010043\|Ga0126380_10205255	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1323	Open in IMG/M
3300010046\|Ga0126384_11942469	Not Available	562	Open in IMG/M
3300010047\|Ga0126382_11204878	Not Available	678	Open in IMG/M
3300010048\|Ga0126373_10623545	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1132	Open in IMG/M
3300010154\|Ga0127503_10187795	Not Available	591	Open in IMG/M
3300010358\|Ga0126370_10560558	Not Available	978	Open in IMG/M
3300010358\|Ga0126370_11901212	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	579	Open in IMG/M
3300010361\|Ga0126378_10211277	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2021	Open in IMG/M
3300010361\|Ga0126378_10245918	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1881	Open in IMG/M
3300010361\|Ga0126378_10334882	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1621	Open in IMG/M
3300010362\|Ga0126377_11240232	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	817	Open in IMG/M
3300010366\|Ga0126379_11046361	Not Available	922	Open in IMG/M
3300010366\|Ga0126379_11237158	Not Available	853	Open in IMG/M
3300010366\|Ga0126379_12914460	Not Available	572	Open in IMG/M
3300010366\|Ga0126379_13739884	Not Available	510	Open in IMG/M
3300010376\|Ga0126381_104811603	Not Available	519	Open in IMG/M
3300010398\|Ga0126383_10258361	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1714	Open in IMG/M
3300010398\|Ga0126383_10692643	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1097	Open in IMG/M
3300010398\|Ga0126383_11734840	Not Available	713	Open in IMG/M
3300010398\|Ga0126383_13690482	Not Available	500	Open in IMG/M
3300012199\|Ga0137383_10271592	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1242	Open in IMG/M
3300012211\|Ga0137377_10135359	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	2355	Open in IMG/M
3300012971\|Ga0126369_10785465	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1034	Open in IMG/M
3300012971\|Ga0126369_11976490	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	671	Open in IMG/M
3300015371\|Ga0132258_11188632	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1928	Open in IMG/M
3300015372\|Ga0132256_101050845	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	929	Open in IMG/M
3300016270\|Ga0182036_11067797	Not Available	668	Open in IMG/M
3300016357\|Ga0182032_10075860	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	2291	Open in IMG/M
3300016387\|Ga0182040_11070742	Not Available	674	Open in IMG/M
3300016404\|Ga0182037_10228301	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1461	Open in IMG/M
3300016404\|Ga0182037_12062099	Not Available	512	Open in IMG/M
3300021478\|Ga0210402_10654049	Not Available	973	Open in IMG/M
3300021560\|Ga0126371_10341271	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1631	Open in IMG/M
3300021560\|Ga0126371_10341271	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1631	Open in IMG/M
3300021560\|Ga0126371_10741293	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1130	Open in IMG/M
3300021560\|Ga0126371_11151719	Not Available	913	Open in IMG/M
3300021560\|Ga0126371_11954684	Not Available	705	Open in IMG/M
3300021560\|Ga0126371_12103167	Not Available	680	Open in IMG/M
3300021560\|Ga0126371_12217741	Not Available	663	Open in IMG/M
3300025910\|Ga0207684_10043685	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3800	Open in IMG/M
3300025928\|Ga0207700_10917622	Not Available	784	Open in IMG/M
3300025929\|Ga0207664_11973312	Not Available	506	Open in IMG/M
3300027725\|Ga0209178_1178660	Not Available	744	Open in IMG/M
3300027787\|Ga0209074_10265383	Not Available	673	Open in IMG/M
3300027874\|Ga0209465_10335558	Not Available	757	Open in IMG/M
3300031231\|Ga0170824_122054459	Not Available	663	Open in IMG/M
3300031543\|Ga0318516_10050522	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	2261	Open in IMG/M
3300031543\|Ga0318516_10061585	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2065	Open in IMG/M
3300031543\|Ga0318516_10096021	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1671	Open in IMG/M
3300031543\|Ga0318516_10569187	Not Available	648	Open in IMG/M
3300031545\|Ga0318541_10048172	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	2178	Open in IMG/M
3300031549\|Ga0318571_10405365	Not Available	533	Open in IMG/M
3300031572\|Ga0318515_10046930	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2161	Open in IMG/M
3300031573\|Ga0310915_10565395	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	807	Open in IMG/M
3300031668\|Ga0318542_10308747	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	810	Open in IMG/M
3300031680\|Ga0318574_10704035	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	592	Open in IMG/M
3300031713\|Ga0318496_10087298	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	1661	Open in IMG/M
3300031713\|Ga0318496_10267885	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	942	Open in IMG/M
3300031719\|Ga0306917_11282019	Not Available	567	Open in IMG/M
3300031723\|Ga0318493_10798444	Not Available	532	Open in IMG/M
3300031724\|Ga0318500_10387781	Not Available	693	Open in IMG/M
3300031748\|Ga0318492_10415396	Not Available	708	Open in IMG/M
3300031765\|Ga0318554_10598876	Not Available	621	Open in IMG/M
3300031771\|Ga0318546_10231010	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1270	Open in IMG/M
3300031778\|Ga0318498_10501300	Not Available	535	Open in IMG/M
3300031779\|Ga0318566_10571344	Not Available	551	Open in IMG/M
3300031795\|Ga0318557_10014211	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2982	Open in IMG/M
3300031833\|Ga0310917_10134725	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1619	Open in IMG/M
3300031835\|Ga0318517_10393716	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	626	Open in IMG/M
3300031860\|Ga0318495_10216266	Not Available	861	Open in IMG/M
3300031894\|Ga0318522_10115496	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1001	Open in IMG/M
3300031910\|Ga0306923_11882635	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	611	Open in IMG/M
3300031912\|Ga0306921_11439528	Not Available	756	Open in IMG/M
3300031942\|Ga0310916_10072950	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2691	Open in IMG/M
3300031946\|Ga0310910_11584872	Not Available	501	Open in IMG/M
3300031947\|Ga0310909_10083618	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2536	Open in IMG/M
3300032001\|Ga0306922_12262760	Not Available	522	Open in IMG/M
3300032042\|Ga0318545_10162789	Not Available	794	Open in IMG/M
3300032054\|Ga0318570_10058114	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1622	Open in IMG/M
3300032054\|Ga0318570_10560135	Not Available	521	Open in IMG/M
3300032090\|Ga0318518_10161182	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1141	Open in IMG/M
3300032205\|Ga0307472_102776193	Not Available	501	Open in IMG/M
3300032261\|Ga0306920_100248193	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	2656	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.33%
Host-Associated	Host-Associated	3.67%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	94.50%
Plants	Host-Associated → Plants	3.67%
Aquatic	Environmental → Aquatic	1.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	94.50%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.75%
Freshwater	Environmental → Aquatic → Freshwater	0.92%
Sediment	Environmental → Aquatic → Sediment	0.92%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	77.06%
Loam	Environmental → Terrestrial → Soil → Loam	17.43%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.83%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.92%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.92%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	40.37%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	30.28%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	10.09%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.34%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.59%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.83%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	29.36%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	28.44%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	10.09%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.17%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.42%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	3.67%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.83%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.83%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.92%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.92%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.92%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.92%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.92%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.92%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2166559006	Grass soil microbial communities from Rothamsted Park, UK - FI (heavy metals 2g/kg) assembled	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300027725	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes)	Environmental	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032042	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FI_00316100	2166559006	Grass Soil	MAVTGSIIVVGIFVLGAVIGLVIVVSIGIRHEESLFRERRRLAEEEGAWLGRPEPYKGLMDTAPNLVSHGARALTGLRIRRARSADSIVVPEYERQH
JGI10216J12902_1083914152	3300000956	Soil	MPAIDAIIIIAVAILAFGAYLGFVAVVSLGIRHEESLFRERRRLAEEESIMLGRPVPYRGFMDTAPGLVSHGARALTGLRVRRDRSADPRAVPEYERQH*
Ga0062595_1000484452	3300004479	Soil	MAAADMIIIIAIGLLVMGAAIGLVVVVSIGIRHEESLFRERRRLAEEESAFLGRPVPYQGFMDTAPDLVSHGARALTGLRVRRDRSADSLGVPEYERQL*
Ga0066395_104463942	3300004633	Tropical Forest Soil	MAATDIIIAVAIFVLGAAIGLVVVVSLGIRHEESLFRERRSLAEQEGAFLGRPVPYQGLMDTAPGLVSHGARALTGLRLRRARRGGSLRAPEYERQL*
Ga0066395_104779161	3300004633	Tropical Forest Soil	VPTTDIIIIAVGIFVMGAAVGLVAVVSIGIKHEESLFRERRSLALEESAFLGRPVPYQGLMDTAPDRVSHGARALTGLRIRRDRSAERRTAPDYERQH*
Ga0066388_1002441812	3300005332	Tropical Forest Soil	MPATYAFIIIAVAILAFGAYLGFVAVVSLGIRHEESLFRERRRIAEEESIMLGRPVPYRGIMDTAPGLVSHGARALTSLRVRRDRSADPRAVPEYERQH*
Ga0066388_1012739161	3300005332	Tropical Forest Soil	MAATDIIIAIGILVLGAAVGFVAVVSIGIRHEERLFRERRRLAEEESIYLGRPVPYRGLMDTAPNLVSHGARALTGLRVRRARSADSLPVPEYEQRL*
Ga0070713_1023921342	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MAVTGIIIAVGIFVLGAVIGLVVVVSIGIRHEESLFRERRSLAEEEGVWLGRPVPYRGFMDTAPDLVSHGARALTGLRVRRARSADSLVVPEYERQH*
Ga0070710_105320392	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MPATYAIIIIAVAILAFGAYLGFVAVVSLGIRHEESLFRERRRIAEEESIMLGRPVPYRGFMDTAPGLVSHGARALTALRVRRDRSADPRAVPEYERQH*
Ga0070706_1000888392	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MAATDIIIIAIGILVLGAAMGLVAVVSIGIRHEESLFRERRRLAEEEGVWLGRPEPYQGLMDTAPNLVSHGARALTGLRIRRARSADSIVVPEYERQH*
Ga0070707_1007433802	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MPATDIIIAVAILALGAALGLVAVVSLGIRHEESLFRERRRIAEEESILLGRAVPYRGFMDTAPDLVSHGARALTGLRVRRDRSASPRAVPEYERQY*
Ga0066903_1001002044	3300005764	Tropical Forest Soil	VAATIIIITVAILAFGAYLGFVAVVSLGIRHEESLFRERRRLAMEESAFLGRPVSYQGFTDSAPGLVSHGARALTGLRVRRDRSADPRAVPEYERQH*
Ga0066903_1001640743	3300005764	Tropical Forest Soil	VPTTDIIIIAVGIFVMGAAIGLVAVVSIGIKHEESLFRERRSLALEESAFLGRPVPYQGLMDTAPDRVSHGARALTGLRIRRDRSAERRTAPDYERQH*
Ga0066903_1013089562	3300005764	Tropical Forest Soil	TTIIIIAVAILAFGAYLGFVAVVSIGIRHEESLFRERRRLAEEESAFLGQPVPYQGFMDTAPGLMSHGARALTGLRIRRDRSADRLGVPEYERQR*
Ga0066903_1038372902	3300005764	Tropical Forest Soil	MAAADIIIAIAIFVLGAAIGLVVVVSIGTRHEESLFRERRSLAEQEGAFLGRPVPYQGLMDSAPGLVSHGARALTGLRLRRAGRGDSLRAPEYERQL*
Ga0066903_1042678461	3300005764	Tropical Forest Soil	MPATDIIIIAVAILAFGAYLGFVAVVSLGIRHEESLFRERRRLAEEESIMLGRPVPYRGFMDTAPGLVSHGARALTGLRVRRDRSADPRAVPEYERQH*
Ga0066903_1060855961	3300005764	Tropical Forest Soil	IIAVGIFVMGAAIGLVAVVSIGIQHEESLFRERRRLALEESAFLGRPVPYQGFTDTAPDRVSHGARALTNLRIRRDRSADPLVAPEYERQH*
Ga0075028_1006851992	3300006050	Watersheds	RKGTAMAVTAIIIAIGIFILGAAIGLVAVVSIGIKHEESLYRERRALAEEESAFLGRPVPYQGITDTAPGLVSHGARALTGLRVRRARGAERRVVPEYERLH*
Ga0070712_1007545012	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MAATDIIIIAIGILVLGAAMGLVAVVSIGIRHEESLFRERRSLAEEEGVWLGRPVPYRGFMDTAPDLVSHGARALTGLRVRRARSADSLVVPEYERQH*
Ga0079221_100252712	3300006804	Agricultural Soil	MPATYAIIIIAVAILAFGAYLGFVAVVSLGIRHEESLFRERRRLAEEESIMLGRPVPYRGFMDTAPGLVSHGARALTSLRVRRDRSADPLVAPEYERQH*
Ga0079221_110884141	3300006804	Agricultural Soil	MPATDIIIAVAILALGAALGLVAVVSLGIRHEESLFRERRRIAEEESILLGRAVPYRGFMDTAPDLVSHGARALTGLRVRRDRSASPRAVPEYERQH*
Ga0075433_100262752	3300006852	Populus Rhizosphere	MPATYAIIIIAAAILAFGAYLGFVAVVSLGIRHEESLFRERRRLAEEESIMLGRPVPYRGFMDTAPGLVSHGARALTSLRVRRDRSADPLVAPEYERQH*
Ga0075424_1019687201	3300006904	Populus Rhizosphere	VAVTDIIIIAIGVFVMGAAIGLVAVVSIGIRHEERLFRQRRQLAEEESIFLGRPVPYQGFMDTAPDQVSHGARALTGLRIRRDRGADSLVAPEYERQR*
Ga0126374_106554351	3300009792	Tropical Forest Soil	MSATTVIIIAVALLGFGAYLGFVAVVSLGIRHEESLFRERRRLAEEESIMLGRPVPYRGFMDTAPGLVSHGARALTGLRVRRDRSADPRAVPEYERQH*
Ga0126374_109255212	3300009792	Tropical Forest Soil	MAATDIIIAVAILIFGAALGLVAVVSIGIRYEERLFRERRSLAEEEGALLGRPVPYQGFTDTAPDPVSHGARALTALRIRRARGADSLRLREYERRH*
Ga0126380_102052552	3300010043	Tropical Forest Soil	MPATYAFIIIAVAILAFGAYLGFVAVVSLGIRHEESLFRERRRIAEEESIMLGRPVPYRGFMDTAPGLVSHGARALTGLRVRRDRSADPRAVPEYERQH*
Ga0126384_119424691	3300010046	Tropical Forest Soil	MPATYAFIIIAVAILAFGAYLGFVAVVSVGIRHEESLFRERRRLAEEESIMLGRPVPYRGFMDTAPGLVSHGARALTGLRVRRDRNAGQRAVPEYERQH*
Ga0126382_112048781	3300010047	Tropical Forest Soil	MVVTDIIIAAAILALGAALSLVAVVSIGIRYEESLFRERRRLAEEESAFLGRPVPYRGFLDTAPGLVSNSARALTGLRVRRDRSADRRAVPEYERQH*
Ga0126373_106235451	3300010048	Tropical Forest Soil	AYLGFVAVVSLGIRHEESLFRERRRLAEEESIMLGRPVPYRGFMDTAPGLVSHGARALTGLRVRRDRSADPRAVPEYERQH*
Ga0127503_101877951	3300010154	Soil	MAATDIIIIAIGILVLGAAIGLVAVVSIGIRHEESLFRERRSLAEEEGAWLGRPEPYKGLMDTAPNLVSHGARALTGLRIRRARSADSIVVPEYERQH*
Ga0126370_105605582	3300010358	Tropical Forest Soil	MPATTTIIIIAVAILALGAYLGFVAVVSLGIRHEESLFRERRRLAEEESIMLGRPVPYRGFMDTAPGLVSHGARALTGLRVRRDRSADPRAVPEYERQH*
Ga0126370_119012121	3300010358	Tropical Forest Soil	ATDIIIAIGILVLGAAVGFVAVVSIGIRHEERLFRERRRLAEEESIYLGRPVPYRGLMDTAPNLVSHGARALTGLRVRRARSADSLPVPEYEQRL*
Ga0126372_122494662	3300010360	Tropical Forest Soil	YLGFVAVVSLGIRHEESLFRERRRLAEEESIMLGRPVPYRGFMDTAPGLVSHGARALTSLRVRRDRSADPRAVPEYERQH*
Ga0126378_102112772	3300010361	Tropical Forest Soil	VEGDTAGQQVRGTAVDATDIIIIAIGILILGAALGLVGVVSIGIRHEERLFRERRQLAEEESIYLGRPVPYRGFTDTAPGLLSHGARALTGLRVRRDRSADPLGVPEYERQH*
Ga0126378_102459181	3300010361	Tropical Forest Soil	VPTTDIIIIAVGIFVMGAAVGLVAVVSIGIKHEESLFRERRSLALEESAFLGRPVPYQGFMDTAPDRVSHGARALTGLRVRRDRSADPLVAPQYERQH*
Ga0126378_103348821	3300010361	Tropical Forest Soil	MPATYAFIIIAVAILAFGAYLGFVAVVSLGIRHEESLFRERRRLAEEESIMLGRPVPYRGIMDTAPGLVSHGARALTSLRVRRDRSADPRAVPEYERQH*
Ga0126377_112402322	3300010362	Tropical Forest Soil	IAVAILAFGAYLGFVAVVSLGIRHEESLFRERRRLAEEESIMLGRPVPYRGIMDTAPGLVSHGARALTSLRVRRDRSADPRAVPEYERQH*
Ga0126379_110463611	3300010366	Tropical Forest Soil	VAATVIIISIGLFVMGAAIGLVAVVSIGIRHEESLFRERRQLAMEESAFLGRPVPYQGFMDTAPDRASHGARALLGLRIRRDRSADSLVAPDYERQR*
Ga0126379_112371581	3300010366	Tropical Forest Soil	MNDAGFIIIVAVAIFIMGAAIGLVAVVSIGIKHEESLFRERRHLAEDEAAFLGRPVPYQGFTDTAPDRVSHGARALTGLRVRRARGAGPLAVPGYRQRR*
Ga0126379_129144602	3300010366	Tropical Forest Soil	MSATTIIIIAVAILAFGAYLGFVAVVSLGIRHEESLFRERRRLAEEESIMLGRPVPYRGFMDTAPGLVSHGARALTSLRVRRDRSADRRAVPEYERQH*
Ga0126379_137398842	3300010366	Tropical Forest Soil	DTAGQHVRGTAVAATIIVITVAILAFGAYLGFVAVVSLGIRHEESLFRERRRLAMEESAFLGRPVSYQGFTDSAPGLVSHGARALTGLRVRRDRSADPRAVPEYERQH*
Ga0126381_1048116031	3300010376	Tropical Forest Soil	MNEAELITVVAVAIFIMGAAIGLVAVVSIGIRHEERLFRERRQLAEEESLMLGRPVSYQGFTDTAPGLVSHGARALTGLRVRRARGAGPLATPG
Ga0126383_102583612	3300010398	Tropical Forest Soil	MPATYAFIIIAVAILAFGAYLGFVAVVSLGIRHEESLFRERRRLAEEESIMLGRPVPYRGFMDTAPGLVSHGARALTGLRVRRDRSADPLGVPEYERQH*
Ga0126383_106926433	3300010398	Tropical Forest Soil	MAATDIIIAIGILVLGAAVGFVAVVSIGIRHEERLFRERRRLAEEESIYLGRPVPYRGLMDTAPNLVSHGARALTGLRVRRARSADSLP
Ga0126383_117348402	3300010398	Tropical Forest Soil	MPATYAFIIIAVAILAFGAYLGFVAVVSLGIRHEESLFRERRRLAEEESLMLGRPVPYRGFMDTAPDIVSHGARGLTGLRVRRDRSTDPRAVREYERQH*
Ga0126383_136904821	3300010398	Tropical Forest Soil	MNEAELITVVAVAIFIMGAAIGLVAVVSIGIRHEERLFRERRQLAEEEAAFLGRPVPYQGFTDTAPDRVSHGARALTGLRIRRARGAGPLA
Ga0137383_102715921	3300012199	Vadose Zone Soil	MAATDIIIIAIGILLLGAAIGLVAVVSIGIRHEESLFRERRRLAEEEGAWMGRPEPYQGLMDTAPNLVSHGARALTGLRIRRARSADSLVVPEYERQH*
Ga0137377_101353593	3300012211	Vadose Zone Soil	MAATDIIIIAIGILLLGAAIGLVAVVSIGIRHEESLFRERRRLAEEEGAWIGRPEPYQGLMDTAPNLVSHGARALTGLRIRRARSADSLVVPEYERQH*
Ga0126369_107854651	3300012971	Tropical Forest Soil	MAATEIIIAVAIFVLGAAIGLVVVVSIGTRHEESLFREGCSLAEQEGAFLGRPVPYQGLMDTAPGLVSHGARALTGLRLRRARRGGSLRAPEYERQL*
Ga0126369_119764902	3300012971	Tropical Forest Soil	AVAILALGAYLGFVAVVSLGIRHEESLFRERRRLAEEESIMLGRPVPYRGFMDTAPGLVSHGARALTGLRVRRDRSADPRAVPEYERQH*
Ga0132258_111886323	3300015371	Arabidopsis Rhizosphere	VDATDTIIIIAIAILAFGAYLGFVAVVSLGIRHEESLFRERRRIAEEQSILLGRPVPYRGVMDTAPGLVSHGARALTGLRVRRDRSADSLGVPEYERQH*
Ga0132256_1010508451	3300015372	Arabidopsis Rhizosphere	VDATDTIIIIAIAILAFGAYLGFVAVVSLGIRHEESLFRERRRIAEEQSILLGRPVPYRGVMDTAPGLVSHGARALTGLRVRRDRSADSLGVPEYERQH
Ga0182036_110677971	3300016270	Soil	VAATVIIIAIGLFVMGAAIGLVAVVSIGIRHEESLFRERRRLAEEESALLGWPVPYQGFMDTAPDLVSHGARALTGLRVRRDRSADRRAVPEYQRQY
Ga0182032_100758603	3300016357	Soil	MPATTTIIIIAVAILAFGAYLGFVAVVSIGIRHEESLFRERRSLAMEESAFLGRPVPYQGFMDTAPGRVSHGARALTALRIRRDRSAAPLATPEYERQH
Ga0182040_110707421	3300016387	Soil	MPATTTIIIIAVAILAFGAYLGFVAVVSIGIRHEESLFRERRSLALEESAFLGRPVPYQGFMDTAPGRVSHGARALTALRIRRDRSTAPLATPEYERQH
Ga0182037_102283013	3300016404	Soil	MPATTTIIIIAVAILAFGAYLGFVAVVSIGIRHEESLFRERRSLAMEESAFLGRPVPYQGFMDTAPGRVSHGARALTALRIRRDRNTAPLATPEYERQH
Ga0182037_120620992	3300016404	Soil	PATDIIIIAVAILALGAYLGFVAVVSLGIRHEESLFRERRRLAEEESIMLGRPVPYRGFMDTAPGLMSHGARALTGLRVRRDRSAAPLATAEYERQH
Ga0210402_106540492	3300021478	Soil	VAAIDIVIIAIGIFVMGAAIGLVAVVSIGIRHEERLFRERRQLAEEESLWLGRPVSYQGFTDTAPGRVSHGARALTGLSIRRPRSADSLVAPEYEWQH
Ga0126371_103412711	3300021560	Tropical Forest Soil	VPTTDIIIIAVGIFVMGAAIGLVAVVSIGIKHEESLFRERRSLALEESAFLGRPVPYQGLMDTAPDRVSHGARALTGLRIRRDRSAERRTAPDYERQH
Ga0126371_103412712	3300021560	Tropical Forest Soil	MNDAGFIIIVAVAIFIMGAAIGLVAVVSIGIKHEESLFRERRHLAEEEAAFLGRPVPYQGFTDTAPDRVSHGARALTGLRVRRARGAGPLAVPGYRQRR
Ga0126371_107412931	3300021560	Tropical Forest Soil	MAATDIIIAVAILTFGAALGLVAVVSIGIRYEERLFRERRSLAEEEGALLGRPVPYQGFTDTAPDPVSHGARALTALRIRRARSADS
Ga0126371_111517192	3300021560	Tropical Forest Soil	MPATTIIIIAVAILAFGAYLGFVAVVSIGIRHEESLFRERRSLALEESAFLGRPVPYQGFMDTAPDRVSHGARALTALRIRRDRSAAPLATPEYERQH
Ga0126371_119546842	3300021560	Tropical Forest Soil	MNEAELITVVAVAIFIMGAAIGLVAVVSIGIRHEERLFRERRQLAEEESLMLGRPVSYQGFTYSAPGQVSHGARALTGLAIRRPRSADSRAVPEYERQY
Ga0126371_121031671	3300021560	Tropical Forest Soil	MAATDIIIAVAIFVLGAAIGLVVVVSLGIRHEESLFRERRSLAEQEGAFLGRPVPYQGLMDTAPGLVSHGARALTGLRLRRARRGGSLRAPEYERQL
Ga0126371_122177412	3300021560	Tropical Forest Soil	MPATDIIIIAVAILAFGAYLGFVAVVSLGIRHEESLFRERRRIAEEESIMLGRPVPYRGFMDTAPGLVSHGARALTGLRVRRDRSPDPRAVPEYERQH
Ga0207684_100436854	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MAATDIIIIAIGILVLGAAMGLVAVVSIGIRHEESLFRERRRLAEEEGVWLGRPEPYQGLMDTAPNLVSHGARALTGLRIRRARSADSIVVPEYERQH
Ga0207700_109176221	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MAVTGIIIAVGIFVLGAVIGLVVVVSIGIRHEESLFRERRSLAEEEGVWLGRPVPYRGFMDTAPDLVSHGARALTGLRIRRARSADSIVVPEYERQH
Ga0207664_119733121	3300025929	Agricultural Soil	MPATYAIIIIAVAILAFGAYLGFVAVVSLGIRHEESLFRERRRIAEEESIMLGRPVPYRGFMDTAPDLVSHGARALTGLRVRRDRSASPRAVPEYERQY
Ga0209178_11786601	3300027725	Agricultural Soil	RGTAMPATYAIIIIAAAILAFGAYLGFVAVVSLGIRHEESLFRERRRLAEEESIMLGRPVPYRGFMDTAPGLVSHGARALTSLRVRRDRSADPLVAPEYERQH
Ga0209074_102653831	3300027787	Agricultural Soil	MPATYAIIIIAAAILAFGAYLGFVAVVSLGIRHEESLFRERRRLAEEESIMLGRPVPYRGFMDTAPGLVSHGARALTSLRVRRDRSADPLVAPEYERQH
Ga0209465_103355582	3300027874	Tropical Forest Soil	VEGDSAGQYVRGLAVPTTDIIIIAVGIFVMGAAVGLVAVVSIGIKHEESLFRERRSLALEESAFLGRPVPYQGLMDTAPDRVSHGARALTGLRIRRDRSAERRTAPDYERQH
Ga0170824_1220544592	3300031231	Forest Soil	MAVTGIIIAVGIFVLGAVIGLVIVVSIGIRHEESLFRERRRLAEEEGAWLGRPEPYKGLMDTAPNLVSHGARALTGLRIRRARSADSLVVPEYERQH
Ga0318516_100505223	3300031543	Soil	MPATTTIIIIAVAILAFGAYLGFVAVVSIGIRHEESLFRERRSLALEESAFLGRPVPYQGFMDTAPDRVSHGARALTALRIRRDRSAAPLATPEYERQH
Ga0318516_100615853	3300031543	Soil	VAATVIIIAIGLFVMGAAIGLVAVVSIGIRHEESLFRERRRLAEEESAFLGWPVPYQGFMDTAPDLVSHGARALTGLRVRRDRSADRRAVPEYQRQY
Ga0318516_100960212	3300031543	Soil	MAATAFIIAVGIFVLGAAVGLVAFVSIGIRHEESLFRERRSLAEEEGAFLGRPVPYQGLMDTAPGLVSHGARALTGLRLRRPRSADSLVAPEYERQL
Ga0318516_105691872	3300031543	Soil	MPATDIIIIAVAILAFGAYLGFVAVVSLGIRHEESLFRERRRLAEEESIMLGRPVPYRGFMDTAPGLMSHGARALTGLRVRRDRSADQRAVPEYERQH
Ga0318541_100481723	3300031545	Soil	MPATTTIIIIAVAILAFGAYLGFVAVVSIGIRHEESLFRERRSLALEESAFLGRPVPYQGFMDTAPDRVSHGARALTALRVRRDR
Ga0318571_104053651	3300031549	Soil	MPATTIIIVAVALLAFGAYLGFVAVVSIGIRHEESLFRERRSLALEESAFLGRPVPYQGFMDTAPDRVSHGARALTALRIRRDRSAAPLATPEYERQH
Ga0318515_100469302	3300031572	Soil	MPATTTIIIIAVAILAFGAYLGFVAVVSIGIRHEESLFRERRSLAMEESAFLGRPVPYQGFMDTAPDRVSHGARALTALRIRRDRSAAPLATPEYERQH
Ga0310915_105653951	3300031573	Soil	TIRRPARKGTAMAATAFIIAVGIFVLGAAVGLVAFVSIGIRHEESLFRERRSLAEEEGAFLGRPVPYQGLMDTAPGLVSHGARALTGLRLRRPRSADSLVAPEYERQL
Ga0318542_103087472	3300031668	Soil	MPATTTIIIIAVAILAFGAYLGFVAVVSIGIRHEESLFRERRSLALEESAFLGRPVPYQGFMDTAPDRVSHGARALTALRIRRDRS
Ga0318574_107040352	3300031680	Soil	AATAFIIAVGIFVLGAAVGLVAFVSIGIRHEESLFRERRSLAEEEGAFLGRPVPYQGLMDTAPGLVSHGARALTGLRLRRPRSADSLVAPEYERQL
Ga0318496_100872982	3300031713	Soil	MPATTTIIIIAVAILAFGAYLGFVAVVSIGIRHEESLFRERRSLALEESAFLGRPVPYQGFMDTAPDRVSHGARALTALRVRRDRSAAPLATPEYERQH
Ga0318496_102678851	3300031713	Soil	GQHVRGTAVAATVIIIAIGLFVMGAAIGLVAVVSIGIRHEESLFRERRRLAEEESAFLGWPVPYQGFMDTAPDLVSHGARALTGLRVRRDRSADRRAVPEYQRQY
Ga0306917_112820191	3300031719	Soil	VAATVIIIAIGLFVMGAAIGLVAVVSIGIRHEESLFRERRRLAEEESAFLGWPVPYQGFMDTAPDLVSHGARALTGLRVRRDRSADRRAVPEYERQH
Ga0318493_107984441	3300031723	Soil	MAATEIIIIAIGIFVMGAAIGLVAVVSVGIRHEERLFRERRQLAEEESLMLGRPVPYQGFTDTAPGPVSHGARALTGLRIRREKGAEQLAVHGYERRH
Ga0318500_103877811	3300031724	Soil	MAATAFIIAVGIFVLGAAVGLVAFVSIGIRHEESLFRERRSLAEEEGAFLGRPVPYQGLMDTAPGLVSHGARALTGLRLRRPRSADSLVAPEY
Ga0318492_104153961	3300031748	Soil	MPATTTIIIIAVAILAFGAYLGFVAVVSIGIRHEESLFRERRSLALEESAFLGRPVPYQGFMDTAPDRVSHGARALTALRIRRDRSAAPLATP
Ga0318554_105988761	3300031765	Soil	MNEAEFITVVAVAIFIMGAAIGLVAVVSVGIRHEERLFRERRQLAEEESLMLGRPVPYQGFTDTAPGPVSHGARALTGLRIRRARGAGPLATPGYEQQR
Ga0318546_102310102	3300031771	Soil	MAATEIIIIAIGIFVMGAAIGLVAVVSVGIRHEERVFRERRQLAEDESLMLGRPVSYQGITYSAPGQVSHGARALTGLAVRRPRSAASLVAPEYEPQH
Ga0318498_105013001	3300031778	Soil	MPATTIIIIAVAILAFGAYLGFVAVVSIGIRHEESLFRERRSLALEESAFLGRQVPYQGFMDTAPGRVSHGARALTALRIRRDRSTAPLATPEYERQH
Ga0318566_105713441	3300031779	Soil	MPATTIIIIAVAILAFGAYLGFVAVVSIGIRHEESLFRERRSLALEESAFLGRPVPYQGFMDTAPDRVSHGARALTALRVRRDRSAAPLATPEYERQH
Ga0318557_100142111	3300031795	Soil	MPATTIIIIAVAILAFGAYLGFVAVVSIGIRHEESLFRERRSLAMEESAFLGRPVPYQGFMDTAPDRVSHGARALTALRVRRDRSAAPLATPEYERQH
Ga0310917_101347252	3300031833	Soil	MPATTTIIIIAVAILAFGAYLGFVAVVSIGIRHEESLFRERRSLALEESAFLGRPVPYQGFMDTAPDRVSHGARALTALRVRRDRSA
Ga0318517_103937161	3300031835	Soil	RGTAVAATVIIIAIGLFVMGAAIGLVAVVSIGIRHEESLFRERRRLAEEESAFLGWPVPYQGFMDTAPDLVSHGARALTGLRVRRDRSADRRAVPEYQRQY
Ga0318495_102162662	3300031860	Soil	MPATTIIIIIAVAILAFGAYLGFVAVVSIGIRHEESLFRERRSLALEESAFLGRPVPYQGFMDTAPDRVSHGARALTALRVRRDRSAAPLATPEYERQH
Ga0318522_101154961	3300031894	Soil	MPATTTIIIIAVAILAFGAYLGFVAVVSIGIRHEESLFRERRSLAMEESAFLGRPVPYQGFMDTAPDRVSHGARALTALRVRRDRSAAPLATPEYERQH
Ga0306923_118826352	3300031910	Soil	AVGIFVLGAAVGLVAFVSIGIRHEESLFRERRSLAEEEGAFLGRPVPYQGLMDTAPGLVSHGARALTGLRLRRPRSADSLVAPEYERQL
Ga0306921_114395282	3300031912	Soil	MPATDIIIIAVAILAFGAYLGFVAVVSLGIRHEESLFRERRRLAEEESIMLGRPVPYRGFMDTAPGLMSHGARALTGLRVRRDRSAD
Ga0310916_100729501	3300031942	Soil	MPATTTIIIIAVAILAFGAYLGFVAVVSIGIRHEESLFRERRSLAMEESAFLGRPVPYQGFMDTAPDRVSHGARALTALRIRRDRSA
Ga0310910_115848721	3300031946	Soil	MPATDIIIIAVAILAFGAYLGFVAVVSLGIRHEESLFRERRRLAEEESIMLGRPVPYRGFMDTAPGLMSHGARALTGLRVR
Ga0310909_100836181	3300031947	Soil	VAATVIIIAIGLFVMGAAIGLVAVVSIGIRHEESLFRERRRLAEEESAFLGWPVPYQGFMDTAPDLVSHGARALTGLRVRRDRS
Ga0306922_122627601	3300032001	Soil	DCLQPLWPRPPTLRQRPDRGTGDTIRRPARKGTAMAATAFIIAVGIFVLGAAVGLVAFVSIGIRHEESLFRERRSLAEEEGAFLGRPVPYQGLMDTAPGLVSHGARALTGLRLRRPRSADSLVAPEYERQL
Ga0318545_101627891	3300032042	Soil	MPATTTIIIIAVAILAFGAYLGFVAVVSIGIRHEESLFRERRSLALEESAFLGRPVPYQGFMDTAPDRVSHGARALTALRIRRDRSA
Ga0318570_100581141	3300032054	Soil	MPATDIIIIAVAILAFGAYLGFVAVVSLGIRHEESLFRERRRLAEEESIMLGRPVPYRGFMDTAPGLMSHGARALTGLRVRRDRSADQRAIPEYERQH
Ga0318570_105601351	3300032054	Soil	MPATTIIIVAVALLAFGAYLGFVAVVSIGIRHEESLFRERRSLALEESAFLGRPVPYQGFMDTAPGRVSHGARALTALRIRRDRNTAPLVLG
Ga0318518_101611822	3300032090	Soil	MPATTTIIIIAVAILAFGAYLGFVAVVSIGIRHEESLFRERRSLALEESAFLGRPVPYQGFMDTAPDRVSHGARALTALRIRRDR
Ga0307472_1027761931	3300032205	Hardwood Forest Soil	MPATDIIIAVAILALGAALGLVAVVSLGIRHEESLFRERRRLAEEESILLGRAVPYRGFMDTAPDLVSHGARALTGLRVRR
Ga0306920_1002481931	3300032261	Soil	MAATAFIIAVGIFVLGAAVGLVAFVSIGIRHEESLFRERRSLAEEEGAFLGRPVPYQGLMDTAPGLVSHGARALTGLRLRRGR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F089260

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences