Metagenome / Metatranscriptome Family F089282

Basic Information
Family ID	F089282
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	65 residues
Representative Sequence	MRREDEYRELANSVRKRAGDEESAVVRAQWEILAGTYVRLADQSAKSSQPKKIDDTGTYGEPNF
Number of Associated Samples	92
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	78.90 %
% of genes near scaffold ends (potentially truncated)	34.86 %
% of genes from short scaffolds (< 2000 bps)	94.50 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Unclassified (75.229 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (17.431 % of family members)
Environment Ontology (ENVO)	Unclassified (44.037 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (62.385 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 59.38% β-sheet: 0.00% Coil/Unstructured: 40.62%
Feature Viewer

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Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF00313	CSD	1.83
PF12787	EcsC	0.92
PF13356	Arm-DNA-bind_3	0.92
PF01272	GreA_GreB	0.92
PF00196	GerE	0.92
PF04392	ABC_sub_bind	0.92
PF05239	PRC	0.92
PF00589	Phage_integrase	0.92
PF11272	DUF3072	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG0782	Transcription elongation factor, GreA/GreB family	Transcription [K]	0.92
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.92

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.23 %
All Organisms	root	All Organisms	24.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.23 %
cellular organisms	root	All Organisms → cellular organisms	24.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.23 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	24.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.23 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	22.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.23 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	20.18 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.23 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	11.93 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	5.50 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.23 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.50 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	4.59 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.23 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.50 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	4.59 %
Afipia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	0.92 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.23 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.50 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	4.59 %
Afipia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	0.92 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.23 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.50 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	4.59 %
Afipia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	0.92 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2166559005\|cont_contig06184	All Organisms → cellular organisms → Bacteria	1874	Open in IMG/M
2189573002\|GZIGXIF02F4YGS	Not Available	513	Open in IMG/M
3300004479\|Ga0062595_100109921	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1493	Open in IMG/M
3300004479\|Ga0062595_100596743	Not Available	859	Open in IMG/M
3300005093\|Ga0062594_100465138	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1053	Open in IMG/M
3300005163\|Ga0066823_10046712	Not Available	770	Open in IMG/M
3300005328\|Ga0070676_10790998	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	699	Open in IMG/M
3300005328\|Ga0070676_11225051	Not Available	571	Open in IMG/M
3300005329\|Ga0070683_100381566	Not Available	1343	Open in IMG/M
3300005329\|Ga0070683_100991156	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	807	Open in IMG/M
3300005331\|Ga0070670_100985571	Not Available	766	Open in IMG/M
3300005334\|Ga0068869_101523957	Not Available	594	Open in IMG/M
3300005335\|Ga0070666_10801550	Not Available	694	Open in IMG/M
3300005356\|Ga0070674_100879244	Not Available	779	Open in IMG/M
3300005365\|Ga0070688_101693048	Not Available	518	Open in IMG/M
3300005434\|Ga0070709_10127338	Not Available	1734	Open in IMG/M
3300005436\|Ga0070713_102002216	Not Available	562	Open in IMG/M
3300005437\|Ga0070710_10529756	Not Available	811	Open in IMG/M
3300005438\|Ga0070701_11321530	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	516	Open in IMG/M
3300005439\|Ga0070711_100274325	All Organisms → cellular organisms → Bacteria → Proteobacteria	1332	Open in IMG/M
3300005459\|Ga0068867_101330302	Not Available	664	Open in IMG/M
3300005535\|Ga0070684_100431441	Not Available	1217	Open in IMG/M
3300005539\|Ga0068853_101026969	Not Available	794	Open in IMG/M
3300005544\|Ga0070686_101189709	Not Available	633	Open in IMG/M
3300005547\|Ga0070693_101118209	Not Available	601	Open in IMG/M
3300005548\|Ga0070665_101091562	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	809	Open in IMG/M
3300005548\|Ga0070665_101631758	Not Available	652	Open in IMG/M
3300005564\|Ga0070664_100437300	Not Available	1199	Open in IMG/M
3300005618\|Ga0068864_100776008	Not Available	941	Open in IMG/M
3300005618\|Ga0068864_101081498	Not Available	798	Open in IMG/M
3300005718\|Ga0068866_10716669	Not Available	688	Open in IMG/M
3300005718\|Ga0068866_11441296	Not Available	504	Open in IMG/M
3300005841\|Ga0068863_102515504	Not Available	524	Open in IMG/M
3300005842\|Ga0068858_100916802	Not Available	857	Open in IMG/M
3300006028\|Ga0070717_11877664	Not Available	541	Open in IMG/M
3300006175\|Ga0070712_100185558	Not Available	1624	Open in IMG/M
3300006358\|Ga0068871_100679105	Not Available	942	Open in IMG/M
3300006755\|Ga0079222_10687287	Not Available	806	Open in IMG/M
3300006871\|Ga0075434_100330447	Not Available	1545	Open in IMG/M
3300006881\|Ga0068865_100807552	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	810	Open in IMG/M
3300006954\|Ga0079219_10190452	Not Available	1149	Open in IMG/M
3300009094\|Ga0111539_10871530	Not Available	1047	Open in IMG/M
3300009098\|Ga0105245_10244624	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1740	Open in IMG/M
3300009098\|Ga0105245_11002685	Not Available	879	Open in IMG/M
3300009101\|Ga0105247_10542814	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	854	Open in IMG/M
3300009156\|Ga0111538_13261780	Not Available	565	Open in IMG/M
3300009156\|Ga0111538_13459621	Not Available	548	Open in IMG/M
3300009162\|Ga0075423_11369615	Not Available	757	Open in IMG/M
3300009174\|Ga0105241_10124984	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2076	Open in IMG/M
3300010154\|Ga0127503_10211379	Not Available	611	Open in IMG/M
3300010154\|Ga0127503_10935540	Not Available	897	Open in IMG/M
3300010154\|Ga0127503_11001293	Not Available	538	Open in IMG/M
3300010371\|Ga0134125_10947210	Not Available	945	Open in IMG/M
3300010373\|Ga0134128_10428703	Not Available	1476	Open in IMG/M
3300010375\|Ga0105239_10481066	Not Available	1410	Open in IMG/M
3300010401\|Ga0134121_10951340	Not Available	839	Open in IMG/M
3300011119\|Ga0105246_10246957	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1414	Open in IMG/M
3300011119\|Ga0105246_10363744	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1189	Open in IMG/M
3300011119\|Ga0105246_10557254	Not Available	983	Open in IMG/M
3300012955\|Ga0164298_10683525	Not Available	717	Open in IMG/M
3300012957\|Ga0164303_10616294	Not Available	717	Open in IMG/M
3300012957\|Ga0164303_11255319	Not Available	545	Open in IMG/M
3300012961\|Ga0164302_10202255	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1222	Open in IMG/M
3300012961\|Ga0164302_10293662	Not Available	1057	Open in IMG/M
3300012985\|Ga0164308_10060304	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2502	Open in IMG/M
3300012985\|Ga0164308_11412178	Not Available	636	Open in IMG/M
3300012988\|Ga0164306_11495810	Not Available	578	Open in IMG/M
3300012989\|Ga0164305_11920536	Not Available	538	Open in IMG/M
3300013306\|Ga0163162_10426996	Not Available	1457	Open in IMG/M
3300013308\|Ga0157375_10435661	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1477	Open in IMG/M
3300014968\|Ga0157379_10472081	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1160	Open in IMG/M
3300014969\|Ga0157376_10086025	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2710	Open in IMG/M
3300015371\|Ga0132258_10314116	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3860	Open in IMG/M
3300015372\|Ga0132256_103639803	Not Available	518	Open in IMG/M
3300018028\|Ga0184608_10530600	Not Available	502	Open in IMG/M
3300018051\|Ga0184620_10061025	Not Available	1087	Open in IMG/M
3300019269\|Ga0184644_1283964	All Organisms → cellular organisms → Bacteria → Proteobacteria	849	Open in IMG/M
3300019879\|Ga0193723_1118430	Not Available	736	Open in IMG/M
3300020069\|Ga0197907_11482103	Not Available	543	Open in IMG/M
3300020082\|Ga0206353_11952481	All Organisms → cellular organisms → Bacteria	971	Open in IMG/M
3300021344\|Ga0193719_10046061	Not Available	1889	Open in IMG/M
3300021951\|Ga0222624_1553637	Not Available	514	Open in IMG/M
3300025898\|Ga0207692_10068148	Not Available	1865	Open in IMG/M
3300025906\|Ga0207699_10072754	All Organisms → cellular organisms → Bacteria → Proteobacteria	2106	Open in IMG/M
3300025906\|Ga0207699_10556493	Not Available	832	Open in IMG/M
3300025915\|Ga0207693_10351262	Not Available	1154	Open in IMG/M
3300025928\|Ga0207700_11571699	Not Available	582	Open in IMG/M
3300025933\|Ga0207706_11604817	Not Available	527	Open in IMG/M
3300025939\|Ga0207665_10737952	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	776	Open in IMG/M
3300025941\|Ga0207711_10741700	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	916	Open in IMG/M
3300025944\|Ga0207661_11283562	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	673	Open in IMG/M
3300025945\|Ga0207679_10943227	Not Available	790	Open in IMG/M
3300025945\|Ga0207679_11796576	Not Available	560	Open in IMG/M
3300026035\|Ga0207703_10479748	Not Available	1165	Open in IMG/M
3300026067\|Ga0207678_11411993	Not Available	615	Open in IMG/M
3300026121\|Ga0207683_10698017	Not Available	941	Open in IMG/M
3300028381\|Ga0268264_11658215	Not Available	650	Open in IMG/M
3300028708\|Ga0307295_10236034	Not Available	524	Open in IMG/M
3300028791\|Ga0307290_10266318	Not Available	628	Open in IMG/M
3300030829\|Ga0308203_1061646	Not Available	587	Open in IMG/M
3300030902\|Ga0308202_1039854	Not Available	827	Open in IMG/M
3300031091\|Ga0308201_10388461	Not Available	522	Open in IMG/M
3300031092\|Ga0308204_10117217	Not Available	754	Open in IMG/M
3300031170\|Ga0307498_10003746	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2564	Open in IMG/M
3300031469\|Ga0170819_11481454	Not Available	552	Open in IMG/M
3300031547\|Ga0310887_10582406	Not Available	684	Open in IMG/M
3300032075\|Ga0310890_11515529	Not Available	553	Open in IMG/M
3300032205\|Ga0307472_101297407	Not Available	701	Open in IMG/M
3300034644\|Ga0370548_113234	Not Available	561	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	56.88%
Host-Associated	Host-Associated	42.20%
Engineered	Engineered	0.92%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	50.46%
Plants	Host-Associated → Plants	42.20%
Aquatic	Environmental → Aquatic	6.42%
Modeled	Engineered → Modeled	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	50.46%
Rhizosphere	Host-Associated → Plants → Rhizosphere	27.52%
Rhizoplane	Host-Associated → Plants → Rhizoplane	13.76%
Freshwater	Environmental → Aquatic → Freshwater	4.59%
Sediment	Environmental → Aquatic → Sediment	1.83%
Roots	Host-Associated → Plants → Roots	0.92%
Simulated Communities (Sequence Read Mixture)	Engineered → Modeled → Simulated Communities (Sequence Read Mixture)	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	32.11%
Loam	Environmental → Terrestrial → Soil → Loam	18.35%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	15.60%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	11.93%
Soil	Host-Associated → Plants → Rhizosphere → Soil	11.93%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	2.75%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.92%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.92%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.92%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	23.85%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	18.35%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	15.60%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	11.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	11.93%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.59%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	2.75%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.83%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.83%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.92%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.92%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	17.43%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	12.84%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	5.50%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	4.59%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.59%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	4.59%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	4.59%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	3.67%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	3.67%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	2.75%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.75%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.75%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.83%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.83%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.83%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.92%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	0.92%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.92%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.92%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.92%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.92%
Simulated	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified → Simulated	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2166559005	Simulated microbial communities from Lyon, France	Engineered	Open in IMG/M
2189573002	Grass soil microbial communities from Rothamsted Park, UK - FE1 (NaCl 30g/L 5ml)	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005163	Soil and rhizosphere microbial communities from Laval, Canada - mgHMB	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300019269	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019879	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m2	Environmental	Open in IMG/M
3300020069	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020082	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300021951	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028708	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_152	Environmental	Open in IMG/M
3300028791	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_144	Environmental	Open in IMG/M
3300030829	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_357 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030902	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_356 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031091	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_355 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031092	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_367 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300034644	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_123 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
cont_0184.00001050	2166559005	Simulated	MRREDEYRQLANSVRKRAGDEESALMRAQWEILAGTYVRLADQSAKTRQPKKIDDTGYDELNF
FE1_02908070	2189573002	Grass Soil	MRREDEYRQLANSVRERAGDEESALLRAQWEILAGTYVRLADQSAKTRQPKKIDDTGTYYDPLDRSRT
Ga0062595_1001099211	3300004479	Soil	MRREDEHRQLANSVRKRAGDEESAVMKAQWEILAGTYVRLADQSVQGRRPKKIDDTGTYDQIELIGRS*
Ga0062595_1005967432	3300004479	Soil	MRREDEYRQLATSVRKRAGDEENALMRAQWEILAGTYVRLADQSAKSCQPTKIDDTGAYGNPNFYCSRT*
Ga0062594_1004651381	3300005093	Soil	MRREDEYRQLATSVRKRAGDEENALMRAQWEILAGTYVRLADQSAKSCQPTKIDDTGAYGNPNLYCSRT*
Ga0066823_100467121	3300005163	Soil	MRREDEYRELANSVRKRAGDEESAVVRAQWEILAGTYVRLADQSAKSSQPKKIDELARIGEPNF*
Ga0070676_107909981	3300005328	Miscanthus Rhizosphere	YRQLANNVRKRAGDEESALMRAQWEILAGTYVRLADQSAKSSQPKKIDDTGTYGEPNF*
Ga0070676_112250511	3300005328	Miscanthus Rhizosphere	MRREDEYRQLATSVRKRAGDEENALMRAQWEIFAGTYVRLADQSAKSCQPTKIDDTGAYGNPNFYCSRT*
Ga0070683_1003815661	3300005329	Corn Rhizosphere	MRREDEYRELANSVRKRAGDEESAVVRAQWEILAGTYVRLADQSAKSSQPKKIDDTGAYWRT*
Ga0070683_1009911562	3300005329	Corn Rhizosphere	MWREDEYTQLANNVRKRAGDEESAVMRAQWEILASTYVRLADQSAKTRQPKKIDDTGTYVDLKF*
Ga0070670_1009855712	3300005331	Switchgrass Rhizosphere	MRREDEYRELANSVRKRAGDEESAVVRAQWEILAGTYVRLADQSAKSSQPKKIDDTGTYGEPNF*
Ga0068869_1015239572	3300005334	Miscanthus Rhizosphere	MRREDEYRELANRVRKRAGDEESAVVRAQWEILAGTYVRLADQSAKSSQPKKIDDTGTYGEPNFSSR*
Ga0070666_108015502	3300005335	Switchgrass Rhizosphere	MRREDEYRELANNVRKRAGDEESAVVRAQWEILAGTYVRLADQSAKNPRPKKIDDTGTYDKIELIGRW*
Ga0070674_1008792442	3300005356	Miscanthus Rhizosphere	MRREDEYRELANSVRKRAGDEESAVVRAQWEILAGTYVRLADQSAKSSQPKKIDDTGTYGEPNFSSR*
Ga0070688_1016930481	3300005365	Switchgrass Rhizosphere	MRREDEYRQLANNVRKRAGDEESALMRAQWEILAGTYVRLADQSAKSSQPKKIGDTGAYGEPNF*
Ga0070709_101273383	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MRREDEYRELANNVRKRAGDEESAVVRAQWEILAGTYVRLADQSAKSSQPKKIDDTGTYGEPNFSSR*
Ga0070713_1020022162	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MRREDEYRQLANNVRKRAGDEESALMRAQWEILAGTYVRLADQSAKSSQPKKIDDTGMYGEPNF*
Ga0070710_105297561	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MWREDEYTQLANNVRKRAGDEESAVMRAQWEILASTYVRLADQSAKTRQPKKIDDTG
Ga0070701_113215302	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	EEVIMWREDEYTQLANNVRKRAGDEESAVMRAQWEILASTYVRLADQSAKTRQPKKIDDTGTYVDLKF*
Ga0070711_1002743253	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MRREDEYRELANNVRKRAGDEESAVVRAQWEILAGTYVRLADQTAKSSQPKKIDDTGTYGEPNFSSR*
Ga0068867_1013303022	3300005459	Miscanthus Rhizosphere	MWREDEYTQLANNVRKRAGDEESAVMRAQWEILASTYVRLADQSAKTRQPKKIDD
Ga0070684_1004314414	3300005535	Corn Rhizosphere	MRREDEYRQLANNVRKPAGDEESALMRAQWEILAATYVRLADQSAKSSQPKKI
Ga0068853_1010269691	3300005539	Corn Rhizosphere	MRPVLKNEEVIMWREDEYTQLANNVRKRAGDEESAVMRAQWEILASTYVRLADQSAKSCQPTKIDDTGAYGNPNLYCSRT*
Ga0070686_1011897092	3300005544	Switchgrass Rhizosphere	ILKAGHHAARGYRQLANNVRKRAGDEESALMRAQWEILAGTYVRLADQSAKSSQPKKIDNTGAYGELNF*
Ga0070693_1011182092	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MRREDEYRELANSVRKRAGDEESAVVRAQWEILAGTYVRLADQTAKSSQPKKLDDTGTYGEPNFSSR
Ga0070665_1010915622	3300005548	Switchgrass Rhizosphere	MRREDEYRELANSVRKRAGDEESAVVRAQWEILAGTYVRLADQTAKSSQPKKIDDTGTYGEPNFSSR*
Ga0070665_1016317581	3300005548	Switchgrass Rhizosphere	VIMRREDEYRELANSVRKRAGDEESAVVRAQWEILAGTYVRLADQSAKSSQPKKIDDTGAYWRT*
Ga0070664_1004373003	3300005564	Corn Rhizosphere	MRREDEYRELANSVRKRAGDEESAVVRAQWEILAGTYVRLADQSAKSSQPKKIDDTGMYGEPNF*
Ga0068864_1007760082	3300005618	Switchgrass Rhizosphere	MRREDEYRELANNVRKRAGDEESAVVRAQWEILAGTYVRLADQSAKSSQPKKIDDTGTYGEPNF*
Ga0068864_1010814981	3300005618	Switchgrass Rhizosphere	MRREDEYRQLATSVRKRAGDEENALMRAQWEILAGTYVRLADQSAKSSQPTKIDDTGAYGNPNFYCSRT*
Ga0068866_107166692	3300005718	Miscanthus Rhizosphere	MWREDEYTQLANNVRKRAGDEESAVMRAQWEILASTYVRLADQSAKTRQPKKI
Ga0068866_114412961	3300005718	Miscanthus Rhizosphere	HRTPFQKEVIMRREDEYRELANNVRKRAGDEESAVVRAQWEILAGTYVRLADQTAKSSQPKKIDDTGTYVDLKF*
Ga0068863_1025155041	3300005841	Switchgrass Rhizosphere	MRREDEYRELANSVRKRAGDEESAVVRAQWEILAGIYVRLADQSAKSSQPKKIDDTGTYGEPNFSSR*
Ga0068858_1009168021	3300005842	Switchgrass Rhizosphere	MRREDEYRELANSVRKRAGDEESAVVRAQWEILPGTYVRLADQSAKSSQPKKIDDTGMYGEPNF*
Ga0070717_118776642	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MRREDEYRELANNVRKRAGDEESAVVRAQWEILAGIYVRLADQSAKSRQPKKIDDTGMYGEPNF*
Ga0070712_1001855585	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MWREDEYTQLANNVRKRAGDEESAVMRAQWEILASTYVRLADQSAKTCQPKKIDDTGTYVDLKF*
Ga0068871_1006791052	3300006358	Miscanthus Rhizosphere	MRREDEYRELANNVRKRAGDEESAVVRAQWEILAGIYVRLADQSAKSSQPKKIDDTGTYGEPNFSSR*
Ga0079222_106872872	3300006755	Agricultural Soil	MRREDEYRQLANSVRKRAGDEESAVVRAQWEILAGTYVRLADQSAKSSQPKKIDDTGTYWRT*
Ga0075434_1003304473	3300006871	Populus Rhizosphere	MRREDEYRELANSVRKRAGDEESAVVRAQWEILAGTYVRLADQSAKSSQPKKIDDTGAYGSQ*
Ga0068865_1008075523	3300006881	Miscanthus Rhizosphere	TVLKNEEVIMWREDEYTQLANNVRKRAGDEESAVMRAQWEILASTYVRLADQSAKTRQPKKIDDTGTYVDLKF*
Ga0079219_101904521	3300006954	Agricultural Soil	MRREDEYRELANSVRKRAGDEESAVVRAQWEILAGTYVRLADQSAKSSQPKKIDDTGTYAEPNF*
Ga0111539_108715302	3300009094	Populus Rhizosphere	VWREDEYTQLANNVRKRAGDEESAVMRAQWEILASTYVRLADQSAKTRQPKKIDDTGTYVDLKF*
Ga0105245_102446244	3300009098	Miscanthus Rhizosphere	MWREDEYIQLANNVRKCAGDEESAVMRAQWEILASTYVRLADQSAKTRQPKKIDDTGTYVDLKF*
Ga0105245_110026851	3300009098	Miscanthus Rhizosphere	MRREDEYRELANSVRKRAGDEESAVVRAQWEILAGTYVRLADQSAKSSQPKKIDDTG
Ga0105247_105428142	3300009101	Switchgrass Rhizosphere	MRREDEYRQLATSVRKRAGDEENALMRAQWEILAGTYVRLADQSAKSCQPTKIDDTGAYGNPNFYCS
Ga0111538_132617801	3300009156	Populus Rhizosphere	MRREDEYRELANSVRKRAGDEESAVVRAQWEILAGTYVRLADQSAKSSQPKKIDDTGE
Ga0111538_134596212	3300009156	Populus Rhizosphere	MRREDEYRQLATSVRKRAGDEENALMRAQWEIFAGTYVRLADQSAKSCQPTKIDDTGAYGDPNFYCSRT*
Ga0075423_113696151	3300009162	Populus Rhizosphere	MRREDEYRELANSVRKRAGDEESAVVRAQWEILAGTYVRLADQSAKSSQPKRIDDTGTY
Ga0105241_101249844	3300009174	Corn Rhizosphere	MRPVLKNEEVIMWREDEYTQLANNVRKRAGDEESAVMRAQWEILASTYVRLADQSAKTRQPKKIDDTGTYVDLKF*
Ga0127503_102113791	3300010154	Soil	MRREDEYRQLAKSVRKRAGDEESAVMRAQWEILAGTYVRLADQSAKTGQPKRTDDTGTYGDLNF*
Ga0127503_109355402	3300010154	Soil	MRREDEYRHLANSVRNRAGDEESALMRAQWEILAGTYVRLADQSEKSSQPKKIDDTGPYGEPNF*
Ga0127503_110012932	3300010154	Soil	EYKQLANNVHKRAGDEESALMRAQWEILAGTYVRLADQSAKSSQPKKIDDTGAYGEPNF*
Ga0134125_109472101	3300010371	Terrestrial Soil	MRREDEYRELANSVRKRAGDEESAVVRAQWEILAGTYVRLADQSAKSSQPKKIDDTGTYGEPNFSS
Ga0134128_104287031	3300010373	Terrestrial Soil	MRREDEYRQLANNVRKRAGDEESALMRAQWEILAGTYVRLADQSAKSSQPKKIGDTGAYGEPNI*
Ga0105239_104810661	3300010375	Corn Rhizosphere	MRREDEYRELANSVRKRAGDEESAVVRAQWEILAGTYVRLADQTAKSSQPKKIDDTGTYGEPNF*
Ga0134121_109513403	3300010401	Terrestrial Soil	MRREDEYRELANSVRKRAGDEESAVVRAQWEILAGTYVRLADQSAKSSRPKKIDDTGAYWRT*
Ga0105246_102469571	3300011119	Miscanthus Rhizosphere	HRTPFQKEVIMRREDEYRELANSVRKRAGDEESAVVRAQWEILAGTYVRLADQSAKSSQPKKIDDTGAYGSQ*
Ga0105246_103637441	3300011119	Miscanthus Rhizosphere	MRWEDEYRQLATSVRKRAGDEENALMRAQWEILAGTYVRLADQSAKSCQPTKIDDTGAYGNPNFYCSRT*
Ga0105246_105572543	3300011119	Miscanthus Rhizosphere	MRREDEYRELANNVRKRAGDEESAVVRAQWEILAGTYVRLADQSAKSSQPKKID
Ga0164298_106835253	3300012955	Soil	MWREDEYRQLANNVRKRAGDEESAVMRAQWEILASPYVRLADQSAKTRQPKKIDDTGTCVDLKF*
Ga0164303_106162942	3300012957	Soil	MRREDEYRELANSVRKRAGDEESAVVRAQWEILAGTYVRLADQSAKSSQPKKI
Ga0164303_112553191	3300012957	Soil	EVIMRREDEYRQLANSVRKRAGDEESAVVRAQWEILAGTYVRLADQTAKSSQPKKIDDTGTYGEPNFSSR*
Ga0164302_102022552	3300012961	Soil	MRREDEYRQLANSVRKRAGDEESALIRAQWEILAGTYVRLADQSSKSSQPKKIDDTGAYGEPNF*
Ga0164302_102936621	3300012961	Soil	MWREDEYRQLANNVRKRAGDEESAVMRAQWEILASTYVRLADQSAKTRQPKKIDDTGTYVDLKF*
Ga0164308_100603041	3300012985	Soil	RELANSVRKRAGDEESAVVKAQWEILAGTYVRLADQSAKSSQPKKIDELARIGEPNF*
Ga0164308_114121781	3300012985	Soil	MWREDEFRQLANNVRKRAGDEENALMRAQWEILAGTYVRLADQSAKSCQPTKIDDTGAYGNPNFYCSRT*
Ga0164306_114958101	3300012988	Soil	MWREDEYRQLANNVRKRAGDEESAVMRAQWEILASTYVRLADQSAKTRRPKKIDDTGTYVDLKF*
Ga0164305_119205361	3300012989	Soil	MRREDEYRELANSVRKRAGDEESAVVRAQWEILAGTYVRLADQSAKSSQPKKIDDTGAYGEPNF*
Ga0163162_104269964	3300013306	Switchgrass Rhizosphere	MRPVLKNEEVIMWREDEYTQLANNVRKRAGDEESAVMRAQWEILASTYVRLADQSAKTRQPKKIDDTG
Ga0157375_104356611	3300013308	Miscanthus Rhizosphere	MRREDEYTHLANNVRKRAGDEESAVMKAQWEILSGTYVRLSDQWAQRRRPKKIDDTGTYDELNF*
Ga0157379_104720812	3300014968	Switchgrass Rhizosphere	VWRDDEYTQLANNVRKRAGDEESAVMRAQWEILASTYVRLADRSAKTRQPKKIDDTGTYVDLKF*
Ga0157376_100860254	3300014969	Miscanthus Rhizosphere	MRREDEYRELANSVRKRAGDEESAVVRAQWEILAGIYVRLADQSAKSSQPKKIDDTGMYGEPNF*
Ga0132258_103141164	3300015371	Arabidopsis Rhizosphere	MRRADEHRQLANSVRKRAGDEESAVMKAQRKILSGTYVRLTDQSAQRRRPKKIDDTGTYDKIELIGRW*
Ga0132256_1036398031	3300015372	Arabidopsis Rhizosphere	NSVRKRAGDEESAVVRAQWEILAGTYVRLADQSAKSSQPKKIDDTGTYGEPNF*
Ga0184608_105306001	3300018028	Groundwater Sediment	MRREDEYRQLANNVRKRAGDEESALMRAQWEILAGTYVRLADQSAKSSQPKKIDDTGAYGEPNF
Ga0184620_100610251	3300018051	Groundwater Sediment	MRREDEYRQLANSVRERAGDEESALLRAQWEILAGTYVRLADQSANTRQPKKIDDTGTHYDLLDRSRTVWPSSPT
Ga0184644_12839642	3300019269	Groundwater Sediment	MRREDEYRQLANSVRERAGDEESALLRAQWEILAGTYVRLADQSAKTRQPKKIDDTGTHYDLLDRSRTVWPSSPT
Ga0193723_11184301	3300019879	Soil	MRREDEYRQLAKSVRKRAGDEESAVMRAQWEILAGTYVRLADQSAKTRQPKKIDDTGTHYDLLDRSRTVWPSSPT
Ga0197907_114821031	3300020069	Corn, Switchgrass And Miscanthus Rhizosphere	MWREDEYIQLANNVRKRAADEESAVMRAQWEILASPFVRLADQSAKTRQPKKIDDTGTYVDLKF
Ga0206353_119524812	3300020082	Corn, Switchgrass And Miscanthus Rhizosphere	MWREDEYTQLANNVRKRAGDEESAVMRAQWEILASTYVRLADQSAKTRQPKKIDDTGTYVDLKF
Ga0193719_100460612	3300021344	Soil	MRREDEYRQLAKSVRKRAGDEESAVMRAQWEILAGTYVRLADQSAKTGQPKRTDDTGTYGDLNF
Ga0222624_15536371	3300021951	Groundwater Sediment	MRREDEYRQLAKCVRKRAGDEESAVMRAQWEILAGTYVRIADQSAKNRHPKKID
Ga0207692_100681481	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MRREDEYRELANNVRKRAGDEESAVVRAQWEILAGTYVRLADQSAKSSQPKKIDDTGTYGEPNFSSR
Ga0207699_100727545	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MRPVLKNEEVIMWREDEYTQLANNVRKRAGDEESAVMRAQWEILASTYVRLADQSAKTRQPKKIDDTGTYVDLKF
Ga0207699_105564931	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	RQLATSVRKRAGDEENALMRAQWEILAGTYVRLADQSAKSCQPTKIDDTGAYGNPNFCCSRT
Ga0207693_103512623	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MWREDEYTQLANNVRKRAGDEESAVMRAQWEILASTYVRLADQSAKTCQPKKIDDTGTYVDLKF
Ga0207700_115716991	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MRREDEYRELANNVRKRAGDEESAVVRAQWEILAGTYVRLADQTAKSSQPKK
Ga0207706_116048171	3300025933	Corn Rhizosphere	MRREDEYRQLATSVRKRAGDEENALMRAQWEILAGTYVRLADQSAKTRQPKKIDDTGTYVDLKF
Ga0207665_107379522	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MRREDEYRQLANSVRKRAGDEESAVMRAQWEILASTYVRLADQSAKTRQPKKIDDTGTYVDLKF
Ga0207711_107417001	3300025941	Switchgrass Rhizosphere	MRREDEYRQLATSVRKRAGDEENALMRAQWEILAGTYVRLADQSAKSCQPTKIDDTGAYGNPNLYCSRT
Ga0207661_112835623	3300025944	Corn Rhizosphere	TVLKNEEVIMWREDEYTQLANNVRKRAGDEESAVMRAQWEILASTYVRLADQSAKTRQPKKIDDTGTYVDLKF
Ga0207679_109432273	3300025945	Corn Rhizosphere	MWREDEYTQLANNVRKRAGDEESAVMRAQWEILASTYVRLADQSAKTRQPKKIDDT
Ga0207679_117965761	3300025945	Corn Rhizosphere	KEVIMRREDEYRELANSVRKRAGDEESAVVRAQWEILAGTYVRLADQSAKSSQPKKIDDTGAYWRT
Ga0207703_104797482	3300026035	Switchgrass Rhizosphere	MRREDEYRELANSVRKRAGDEESAVVRAQWEILPGTYVRLADQSAKSSQPKKIDDTGMYGEPNF
Ga0207678_114119931	3300026067	Corn Rhizosphere	MRREDEYRELANSVRKRAGDEESAVVRAQWEILAGTYVRLADQSAKSCQPTKIDDTGAYGNPNFYCSRT
Ga0207683_106980171	3300026121	Miscanthus Rhizosphere	MRREDEYRELANSVRKRAGDEESAVVRAQWEILAGIYVRLADQSAKSSQPKKIGDTGAYGEPNF
Ga0268264_116582152	3300028381	Switchgrass Rhizosphere	MRREDEYRELANSVRKRAGDEESAVVRAQWEILAGTYVRLADQSAKSSQPKKIDDTGTYGEPNF
Ga0307295_102360341	3300028708	Soil	MRREDEYRQLANSVRERAGDEESALLRAQWEILAGSYVRLSDQATNRQPKKID
Ga0307290_102663182	3300028791	Soil	MRREDEYRQLANSVRERAGDEESALLRAQWEILAGTYVRLADQSANTRQPKKIDDTGTHYDLLDRSRTVWPSSPI
Ga0308203_10616461	3300030829	Soil	MRREDEYRQLAKCVRKRAGDEESAVMRAQWEILAGTYVRLADQSAKTGQPKRTDDTGTYGDLNF
Ga0308202_10398541	3300030902	Soil	VLKNEEVIMRREDEYRQLANNVRKRAGDEESALMRAQWEILAGTYVRLADQSAKSSQPKKIDDTGAYGEPNF
Ga0308201_103884612	3300031091	Soil	MRREDEYRQLAKCVRKRAGDEESAVMRAQWEILAGTYVRLADQSAKTGQPKRTDDTGTYGDLN
Ga0308204_101172171	3300031092	Soil	EVIMRREDEYRQLANNVRKRAGDEESALMRAQWEILAGTYVRLADQSAKSSQPKKIDDTGAYGEPNF
Ga0307498_100037463	3300031170	Soil	MRRADEHRQLANSVRKRAGDEESAVMKAQRKILSGTYVRLTDQSAQRRRPKKIDDTGTYDKIELIGRW
Ga0170819_114814541	3300031469	Forest Soil	VIMRREDEYRQLANSVRKRAGDEESALMRAQWEILAGTYVRLADQSAKTRQPKKIDDTGYDELNF
Ga0310887_105824061	3300031547	Soil	RREDEYRELANNVRKRAGDEESAVVRAQWEILAGTYVRLADQSAKSSQPKKIDDTGTYGEPNFSSR
Ga0310890_115155291	3300032075	Soil	MRREDEYRQLANNVRKRAGDEESALMRAQWEILAGTYVRLADQSAKSSQPKKIDDTGTYGEPNFSSR
Ga0307472_1012974072	3300032205	Hardwood Forest Soil	NNVRKRAGDEESALIRAQWEILAGTYVRLADQSAKSSQPKKIDDTGAYGEPNF
Ga0370548_113234_8_235	3300034644	Soil	MRREDEYRRLANSVRERAGDEESALLRAQWEILAGTYVRLADQSAKTRQPKKIDDTGTHYDLLDRSRTVWPSSPT

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F089282

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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