NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F089418

Metagenome / Metatranscriptome Family F089418

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F089418
Family Type Metagenome / Metatranscriptome
Number of Sequences 109
Average Sequence Length 46 residues
Representative Sequence RYRVGATDSNDQYIGDMGVGVHGVVSVATSGTGTMAPTITLYLG
Number of Associated Samples 96
Number of Associated Scaffolds 109

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 97.25 %
% of genes from short scaffolds (< 2000 bps) 92.66 %
Associated GOLD sequencing projects 78
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (85.321 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(37.615 % of family members)
Environment Ontology (ENVO) Unclassified
(89.908 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(87.156 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 0.00%    β-sheet: 36.36%    Coil/Unstructured: 63.64%
Feature Viewer
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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 109 Family Scaffolds
PF01476LysM 0.92



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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A85.32 %
All OrganismsrootAll Organisms14.68 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001450|JGI24006J15134_10122192Not Available897Open in IMG/M
3300001460|JGI24003J15210_10099208Not Available837Open in IMG/M
3300001720|JGI24513J20088_1012616Not Available1011Open in IMG/M
3300002231|KVRMV2_100364158All Organisms → Viruses → Predicted Viral1643Open in IMG/M
3300002511|JGI25131J35506_1013015All Organisms → Viruses → Predicted Viral1145Open in IMG/M
3300005239|Ga0073579_1617596Not Available735Open in IMG/M
3300005426|Ga0066847_10088752Not Available970Open in IMG/M
3300005428|Ga0066863_10166978Not Available787Open in IMG/M
3300006026|Ga0075478_10130520Not Available791Open in IMG/M
3300006164|Ga0075441_10156586Not Available857Open in IMG/M
3300006310|Ga0068471_1446624Not Available839Open in IMG/M
3300006336|Ga0068502_1197176Not Available800Open in IMG/M
3300006637|Ga0075461_10094439Not Available943Open in IMG/M
3300006735|Ga0098038_1276430Not Available525Open in IMG/M
3300006737|Ga0098037_1115592Not Available920Open in IMG/M
3300006793|Ga0098055_1219959All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium718Open in IMG/M
3300006916|Ga0070750_10218567Not Available837Open in IMG/M
3300006929|Ga0098036_1048833Not Available1318Open in IMG/M
3300006929|Ga0098036_1163838Not Available678Open in IMG/M
3300007229|Ga0075468_10006342All Organisms → Viruses → Predicted Viral4826Open in IMG/M
3300007539|Ga0099849_1323305Not Available553Open in IMG/M
3300007758|Ga0105668_1152077Not Available642Open in IMG/M
3300007963|Ga0110931_1021947All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium1927Open in IMG/M
3300008050|Ga0098052_1013165All Organisms → Viruses → Predicted Viral4178Open in IMG/M
3300008216|Ga0114898_1025405Not Available2022Open in IMG/M
3300008216|Ga0114898_1155324All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium657Open in IMG/M
3300008216|Ga0114898_1156788Not Available654Open in IMG/M
3300008218|Ga0114904_1074131Not Available854Open in IMG/M
3300008219|Ga0114905_1077112All Organisms → Viruses → Predicted Viral1184Open in IMG/M
3300008219|Ga0114905_1206626Not Available631Open in IMG/M
3300008220|Ga0114910_1142327Not Available687Open in IMG/M
3300008220|Ga0114910_1183574Not Available583Open in IMG/M
3300008221|Ga0114916_1088211Not Available772Open in IMG/M
3300009149|Ga0114918_10108098Not Available1716Open in IMG/M
3300009193|Ga0115551_1146580Not Available1082Open in IMG/M
3300009409|Ga0114993_10515249Not Available887Open in IMG/M
3300009413|Ga0114902_1048630Not Available1239Open in IMG/M
3300009414|Ga0114909_1179105Not Available548Open in IMG/M
3300009425|Ga0114997_10172419Not Available1262Open in IMG/M
3300009432|Ga0115005_11263014Not Available602Open in IMG/M
3300009472|Ga0115554_1146836Not Available977Open in IMG/M
3300009512|Ga0115003_10445267Not Available760Open in IMG/M
3300009602|Ga0114900_1187819Not Available513Open in IMG/M
3300009605|Ga0114906_1145071Not Available823Open in IMG/M
3300009622|Ga0105173_1091541Not Available552Open in IMG/M
3300009703|Ga0114933_10327803Not Available1012Open in IMG/M
3300009706|Ga0115002_11134634Not Available531Open in IMG/M
3300009786|Ga0114999_10716615Not Available747Open in IMG/M
3300010153|Ga0098059_1374723Not Available539Open in IMG/M
3300010155|Ga0098047_10177502Not Available820Open in IMG/M
3300010300|Ga0129351_1276753Not Available638Open in IMG/M
3300011253|Ga0151671_1050663All Organisms → Viruses → Predicted Viral1067Open in IMG/M
3300017708|Ga0181369_1071249Not Available751Open in IMG/M
3300017715|Ga0181370_1037834Not Available624Open in IMG/M
3300017715|Ga0181370_1039651Not Available608Open in IMG/M
3300017750|Ga0181405_1077269Not Available853Open in IMG/M
3300017753|Ga0181407_1176525Not Available522Open in IMG/M
3300017772|Ga0181430_1237935Not Available515Open in IMG/M
3300020438|Ga0211576_10384958Not Available719Open in IMG/M
3300022061|Ga0212023_1017329Not Available966Open in IMG/M
3300022072|Ga0196889_1049937Not Available813Open in IMG/M
3300022164|Ga0212022_1071867Not Available531Open in IMG/M
3300022187|Ga0196899_1157926Not Available626Open in IMG/M
3300024262|Ga0210003_1032006All Organisms → Viruses → Predicted Viral2926Open in IMG/M
(restricted) 3300024518|Ga0255048_10074714Not Available1684Open in IMG/M
(restricted) 3300024518|Ga0255048_10607996Not Available528Open in IMG/M
3300025043|Ga0207907_115266All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium714Open in IMG/M
3300025066|Ga0208012_1025385Not Available937Open in IMG/M
3300025099|Ga0208669_1099780Not Available606Open in IMG/M
3300025108|Ga0208793_1115124Not Available740Open in IMG/M
3300025128|Ga0208919_1086108All Organisms → Viruses → Predicted Viral1025Open in IMG/M
3300025141|Ga0209756_1282969Not Available593Open in IMG/M
3300025168|Ga0209337_1069605All Organisms → Viruses → Predicted Viral1746Open in IMG/M
3300025168|Ga0209337_1170500Not Available919Open in IMG/M
3300025168|Ga0209337_1253520Not Available672Open in IMG/M
3300025168|Ga0209337_1354325Not Available501Open in IMG/M
3300025264|Ga0208029_1076811All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium641Open in IMG/M
3300025270|Ga0208813_1050084Not Available923Open in IMG/M
3300025277|Ga0208180_1077500Not Available782Open in IMG/M
3300025282|Ga0208030_1140267Not Available575Open in IMG/M
3300025286|Ga0208315_1025957Not Available1757Open in IMG/M
3300025293|Ga0208934_1010039Not Available2116Open in IMG/M
3300025296|Ga0208316_1051867Not Available850Open in IMG/M
3300025296|Ga0208316_1098106Not Available526Open in IMG/M
3300025300|Ga0208181_1038541Not Available1036Open in IMG/M
3300025300|Ga0208181_1104610Not Available540Open in IMG/M
3300025301|Ga0208450_1083709Not Available720Open in IMG/M
3300025301|Ga0208450_1093816All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium665Open in IMG/M
3300025305|Ga0208684_1148186Not Available551Open in IMG/M
3300025508|Ga0208148_1012304All Organisms → Viruses → Predicted Viral2591Open in IMG/M
3300025610|Ga0208149_1092116Not Available735Open in IMG/M
3300025645|Ga0208643_1088927Not Available866Open in IMG/M
3300025759|Ga0208899_1057908Not Available1620Open in IMG/M
3300025873|Ga0209757_10078360Not Available995Open in IMG/M
3300026206|Ga0207988_1074030Not Available810Open in IMG/M
3300026267|Ga0208278_1146817Not Available511Open in IMG/M
3300027672|Ga0209383_1111291Not Available900Open in IMG/M
3300027838|Ga0209089_10707584Not Available516Open in IMG/M
3300027844|Ga0209501_10292584Not Available1004Open in IMG/M
3300027847|Ga0209402_10041704Not Available3373Open in IMG/M
(restricted) 3300027868|Ga0255053_10513891Not Available579Open in IMG/M
3300028018|Ga0256381_1000431Not Available4543Open in IMG/M
3300028022|Ga0256382_1090549Not Available731Open in IMG/M
3300031519|Ga0307488_10677892Not Available586Open in IMG/M
3300031627|Ga0302118_10397706Not Available620Open in IMG/M
3300031803|Ga0310120_10451959Not Available651Open in IMG/M
3300032277|Ga0316202_10244314Not Available834Open in IMG/M
3300033742|Ga0314858_088616Not Available780Open in IMG/M
3300034629|Ga0326756_031410Not Available639Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine37.61%
Deep OceanEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean23.85%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous11.93%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater2.75%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine2.75%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater2.75%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine1.83%
Deep SubsurfaceEnvironmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface1.83%
MarineEnvironmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine1.83%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine1.83%
SeawaterEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Seawater1.83%
Marine OceanicEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine Oceanic0.92%
Background SeawaterEnvironmental → Aquatic → Marine → Oceanic → Aphotic Zone → Background Seawater0.92%
Microbial MatEnvironmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat0.92%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine0.92%
Sackhole BrineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine0.92%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient0.92%
Sea-Ice BrineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine0.92%
Filtered SeawaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Filtered Seawater0.92%
Marine SedimentEnvironmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment0.92%
Deep SubsurfaceEnvironmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface0.92%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001450Marine viral communities from the Pacific Ocean - LP-53EnvironmentalOpen in IMG/M
3300001460Marine viral communities from the Pacific Ocean - LP-28EnvironmentalOpen in IMG/M
3300001720Marine viral communities from the Pacific Ocean - LP-36EnvironmentalOpen in IMG/M
3300002231Marine sediment microbial communities from Santorini caldera mats, Greece - red matEnvironmentalOpen in IMG/M
3300002511Marine viral communities from the Pacific Ocean - ETNP_2_1000EnvironmentalOpen in IMG/M
3300005239Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of MaineEnvironmentalOpen in IMG/M
3300005426Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201310SV74EnvironmentalOpen in IMG/M
3300005428Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F10-02SV253EnvironmentalOpen in IMG/M
3300006026Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNAEnvironmentalOpen in IMG/M
3300006164Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNAEnvironmentalOpen in IMG/M
3300006310Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_3_0500mEnvironmentalOpen in IMG/M
3300006336Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0500mEnvironmentalOpen in IMG/M
3300006637Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_>0.8_DNAEnvironmentalOpen in IMG/M
3300006735Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaGEnvironmentalOpen in IMG/M
3300006737Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaGEnvironmentalOpen in IMG/M
3300006793Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaGEnvironmentalOpen in IMG/M
3300006916Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24EnvironmentalOpen in IMG/M
3300006929Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaGEnvironmentalOpen in IMG/M
3300007229Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_<0.8_DNAEnvironmentalOpen in IMG/M
3300007539Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaGEnvironmentalOpen in IMG/M
3300007758Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample CTDPlume_2015_DNA CLC_assemblyEnvironmentalOpen in IMG/M
3300007963Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (version 2)EnvironmentalOpen in IMG/M
3300008050Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaGEnvironmentalOpen in IMG/M
3300008216Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_GeostarEnvironmentalOpen in IMG/M
3300008218Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s6EnvironmentalOpen in IMG/M
3300008219Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_b05EnvironmentalOpen in IMG/M
3300008220Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_908EnvironmentalOpen in IMG/M
3300008221Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_66EnvironmentalOpen in IMG/M
3300009149Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaGEnvironmentalOpen in IMG/M
3300009193Pelagic marine microbial communities from North Sea - COGITO_mtgs_110321EnvironmentalOpen in IMG/M
3300009409Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150EnvironmentalOpen in IMG/M
3300009413Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s12EnvironmentalOpen in IMG/M
3300009414Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906EnvironmentalOpen in IMG/M
3300009425Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136EnvironmentalOpen in IMG/M
3300009432Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean - Greenland ARC118M MetagenomeEnvironmentalOpen in IMG/M
3300009472Pelagic marine microbial communities from North Sea - COGITO_mtgs_110404EnvironmentalOpen in IMG/M
3300009512Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_88EnvironmentalOpen in IMG/M
3300009602Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_231EnvironmentalOpen in IMG/M
3300009605Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_M9EnvironmentalOpen in IMG/M
3300009622Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3321_4155EnvironmentalOpen in IMG/M
3300009703Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 4SBTROV12_W25 metaGEnvironmentalOpen in IMG/M
3300009706Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_86EnvironmentalOpen in IMG/M
3300009786Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_126EnvironmentalOpen in IMG/M
3300010153Marine viral communities from the Subarctic Pacific Ocean - 20_ETSP_OMZ_AT15318 metaGEnvironmentalOpen in IMG/M
3300010155Marine viral communities from the Subarctic Pacific Ocean - 12_ETSP_OMZ_AT15267 metaGEnvironmentalOpen in IMG/M
3300010300Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.2_DNAEnvironmentalOpen in IMG/M
3300011253Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_2, permeateEnvironmentalOpen in IMG/M
3300017708Marine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaGEnvironmentalOpen in IMG/M
3300017715Marine viral communities from the Subarctic Pacific Ocean - Lowphox_06 viral metaGEnvironmentalOpen in IMG/M
3300017750Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 28 SPOT_SRF_2011-11-29EnvironmentalOpen in IMG/M
3300017753Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 30 SPOT_SRF_2012-01-26EnvironmentalOpen in IMG/M
3300017772Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 53 SPOT_SRF_2014-04-10EnvironmentalOpen in IMG/M
3300020438Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)EnvironmentalOpen in IMG/M
3300022061Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v2)EnvironmentalOpen in IMG/M
3300022072Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v3)EnvironmentalOpen in IMG/M
3300022164Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (v2)EnvironmentalOpen in IMG/M
3300022187Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (v3)EnvironmentalOpen in IMG/M
3300024262Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300024518 (restricted)Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_2EnvironmentalOpen in IMG/M
3300025043Marine viral communities from the Subarctic Pacific Ocean - LP-52 (SPAdes)EnvironmentalOpen in IMG/M
3300025066Marine viral communities from the Subarctic Pacific Ocean - 15B_ETSP_OMZ_AT15312_CsCl metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025099Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025108Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025128Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025141Marine viral communities from the Pacific Ocean - ETNP_6_85 (SPAdes)EnvironmentalOpen in IMG/M
3300025168Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)EnvironmentalOpen in IMG/M
3300025264Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s12 (SPAdes)EnvironmentalOpen in IMG/M
3300025270Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_904 (SPAdes)EnvironmentalOpen in IMG/M
3300025277Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s16 (SPAdes)EnvironmentalOpen in IMG/M
3300025282Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_M9 (SPAdes)EnvironmentalOpen in IMG/M
3300025286Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_215 (SPAdes)EnvironmentalOpen in IMG/M
3300025293Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s2 (SPAdes)EnvironmentalOpen in IMG/M
3300025296Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_231 (SPAdes)EnvironmentalOpen in IMG/M
3300025300Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s6 (SPAdes)EnvironmentalOpen in IMG/M
3300025301Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_908 (SPAdes)EnvironmentalOpen in IMG/M
3300025305Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_b05 (SPAdes)EnvironmentalOpen in IMG/M
3300025508Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025610Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025645Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (SPAdes)EnvironmentalOpen in IMG/M
3300025759Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (SPAdes)EnvironmentalOpen in IMG/M
3300025873Marine viral communities from the Pacific Ocean - ETNP_6_1000 (SPAdes)EnvironmentalOpen in IMG/M
3300026206Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201310SV74 (SPAdes)EnvironmentalOpen in IMG/M
3300026267Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV259 (SPAdes)EnvironmentalOpen in IMG/M
3300027672Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG029-DNA (SPAdes)EnvironmentalOpen in IMG/M
3300027838Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150 (SPAdes)EnvironmentalOpen in IMG/M
3300027844Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134 (SPAdes)EnvironmentalOpen in IMG/M
3300027847Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_126 (SPAdes)EnvironmentalOpen in IMG/M
3300027868 (restricted)Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_22EnvironmentalOpen in IMG/M
3300028018Seawater viral communities from deep brine pools at the bottom of the Mediterranean Sea - LS1 1600mEnvironmentalOpen in IMG/M
3300028022Seawater viral communities from deep brine pools at the bottom of the Mediterranean Sea - LS1 750mEnvironmentalOpen in IMG/M
3300031519Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2EnvironmentalOpen in IMG/M
3300031627Marine microbial communities from Western Arctic Ocean, Canada - AG5_33.1EnvironmentalOpen in IMG/M
3300031803Marine microbial communities from Western Arctic Ocean, Canada - CB27_AW_983EnvironmentalOpen in IMG/M
3300032277Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 3-month pyrrhotiteEnvironmentalOpen in IMG/M
3300033742Sea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - 2018 seawaterEnvironmentalOpen in IMG/M
3300034629Seawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 543_2600EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
JGI24006J15134_1012219213300001450MarineGTAIRYRVGALDSNDMYIGDMGVGIYGVLSVANSGTGTMTPTITLYVG*
JGI24003J15210_1009920823300001460MarineTNKTAKGTAIRYRVGALDSNDMYIGDMGVGVYGVLSVANSGTGTMTPTITLYVG*
JGI24513J20088_101261613300001720MarineDSQDTYVGDMGVGVFGIVSLATSGAAAMLPTITLYVG*
KVRMV2_10036415813300002231Marine SedimentYRVGATDSNDAYIGDMGVAVHGIVSLSTSGAAAMAPTITLYVG*
JGI25131J35506_101301533300002511MarineVGALDSSDQYIGDMGVGVIGILSVATSGTGTMAPTITLYVG*
Ga0073579_161759613300005239MarineIRYRVAALDSQDTYIGDMGVGVFGIVSVATSGAAAMAPTITLYVG*
Ga0066847_1008875223300005426MarineGTAIRYRVGALDSNDQYIGDMGVGVIGVVSVATSGTGTMAPTITLYLG*
Ga0066863_1016697813300005428MarineALDSNDQYVGDMGVGVVGIVSVATSGTGTMAPTITLYLG*
Ga0075478_1013052023300006026AqueousQDTYVGDMGVGVFGIVSLATSGAAAMLPTITLYVG*
Ga0075441_1015658623300006164MarineWRVGATDSQDTYIGDMGVGVHGIVSLATSGAAAMAPTITLYVG*
Ga0068471_144662423300006310MarineTNRTAKGTAIRYRVAALDSNDQYIGDMGVGVHGIVSVATSGTGAMLPTITLYLG*
Ga0068502_119717623300006336MarineDSNDQYIGDMGVGVHGIVSVATSGTGAMLPTITLYLG*
Ga0075461_1009443933300006637AqueousDQYIGDMGVGVNGIVSVATSGTGTMLPTITLYLG*
Ga0098038_127643013300006735MarineRVGATDSNDMYIGELGIGVNGVVCCSTSGTGTMLPTITLYVG*
Ga0098037_111559213300006737MarineTAKGTAIRYRVGATDSNDQYIGDMGVGVYGVLSVANSGTGTMTPTITLYVG*
Ga0098055_121995923300006793MarineQITNRSAKGTAIRYRVGATDSNDQYIGDMGVGVHGVVSVATSGTGTMAPTITLYLG*
Ga0070750_1021856713300006916AqueousTAIRWRVGATDSQDTYIGDMGVGVFGIVSLATSGAAAMLPTITLYVG*
Ga0098036_104883313300006929MarineRYRVGATDSNDMYIGELGIGVNGVVCCSTSGTGTMLPTITLYVG*
Ga0098036_116383813300006929MarineNKTAKGTAIRYRVGATDSNDMYIGELGIGVNGVVCCSTSGTGTMLPTITLYVG*
Ga0075468_1000634213300007229AqueousYRVGALDSNDMYIGELGIGVNGVVCCSTSGTGAMLPTITLYVG*
Ga0099849_132330513300007539AqueousTKQITNKTAAGTAIRWRVGATDSQDTYIGDMGVGVFGIVSLATSGAAAMLPTITLYVG*
Ga0105668_115207713300007758Background SeawaterRWRVGALDSNDQYIGDMGVGVHGIVSVATSGTGAMLPTITLYLG*
Ga0110931_102194713300007963MarineQITNKTAKGNALRYRVGATDSNDAYIGDMGVAVHGIVSLSTSGAAAMAPTITLYVG*
Ga0098052_101316513300008050MarineGSKQITNRSAKGTAIRYRVGATDSNDQYIGDMGVGVHGVVSVATSGTGTMAPTITLYLG*
Ga0114898_102540553300008216Deep OceanGATDSNDQYIGDMGVGVFGVVSVATSGTGTMAPTITLYLG*
Ga0114898_115532423300008216Deep OceanRYRVGATDSNDQYIGDMGVGVHGVVSVATSGTGTMAPTITLYLG*
Ga0114898_115678813300008216Deep OceanGTAIRYRVGATDSNDQYIGDMGVGVHGVVSVATSGTGTMAPTITLYLG*
Ga0114904_107413113300008218Deep OceanGTAIRYRVGATDSNDQYIGDMGVGVHGVVSVATSGTGSMAPTITLYLG*
Ga0114905_107711233300008219Deep OceanNKTAKGNAIRYRMGATDSNDVYIGDMGVAVHGIVSLSTSGAAAMAPTITLYVG*
Ga0114905_120662623300008219Deep OceanRSAKGTAIRYRVGATDSNDQYIGDMGVGVHGVVSVATSGTGSMAPTITLYLG*
Ga0114910_114232723300008220Deep OceanRYMVGATDSNDAYIGDMGVAVHGIVSLSTSGAAAMAQTITLYVG*
Ga0114910_118357413300008220Deep OceanVGATDSNDQYIGDMGVGVHGVVSVATSGTGSMAPTITLYLG*
Ga0114916_108821113300008221Deep OceanTNKTAKGTSIRRRVAALDSQDTYIGDMGVGVHGIVSLATSGAAAMAPTITLYVG*
Ga0114918_1010809813300009149Deep SubsurfaceQITNKTAAGTAIRWRVGATDSQDTYIGDMGVGVFGIVSLATSGAAAMLPTITLYVG*
Ga0115551_114658013300009193Pelagic MarineGALDSNDMYIGDMGVGVYGVLSVANSGTGVMTPTITLYVG*
Ga0114993_1051524913300009409MarineQDTYIGDMGVGVHGIVSLATSGAAAMAPTITLYVG*
Ga0114902_104863013300009413Deep OceanSNDQYIGDMGVGVHGVVSVATSGTGTMAPTITLYLG*
Ga0114909_117910513300009414Deep OceanNRSAKGTAIRYRVGATDSNDQYIGDMGVGVFGVVSVATSGTGTMAPTITLYLG*
Ga0114997_1017241933300009425MarineGTAIRWRVGATDSQDTYVGDMGVGVFGIVSLATSGAAAMLPTITLYVG*
Ga0115005_1126301423300009432MarineALRWRVAALDSQDTYVGGMGVGVFGIVSLATSGAAAMAPTITLYVG*
Ga0115554_114683633300009472Pelagic MarineTKQITNKTAAGTAIRWRVGATDSQDTYIGDIGVGVFGIVSLSTSGAAAMLPTITLYVG*
Ga0115003_1044526723300009512MarineRYRVGALDSNDMYIGDMGVGVYGVLSVATSGTAAMAPTITLYVG*
Ga0114900_118781923300009602Deep OceanAKGTAIRYRVGATDSNDQYIGDMGVGVFGVVSVATSGTGTMAPTITLYLG*
Ga0114906_114507113300009605Deep OceanAKGNAIRYRMGATDSNDVYIGDMGVAVHGIVSLSTSGAAAMAPTITLYVG*
Ga0105173_109154113300009622Marine OceanicITNRTAKGTAIRWRVGALDSNDQYIGDMGVGVHGVVSVATSGTGAMLPTITLYLG*
Ga0114933_1032780333300009703Deep SubsurfaceGTAIRYRVGATDSNDQYIGDMGVGVFGIVSVATSGTGTMAPTITLYLG*
Ga0115002_1113463413300009706MarineGALDSNDMYIGELGVPAYGVVSCSTSGTGAMLPHITLYVG*
Ga0114999_1071661513300009786MarineKQITNKTAVGTAIRWRVGATDSQDTYIGDMGVGVHGIVSLATSGAAAMAPTITLYVG*
Ga0098059_137472323300010153MarineKGTAIRYRVAALDSNDQYIGDMGVGVHGIVSVATSGTGAMLPTITLYLG*
Ga0098047_1017750213300010155MarineRYRVAAADANDQYIGDMGVGIHGILSVANSGTGTMTPTITLYVG*
Ga0129351_127675313300010300Freshwater To Marine Saline GradientNKTAKGTAIRYRVGALDSNDQYIGDMGVGVNGIVSVATSGTGTMLPTITLYLG*
Ga0151671_105066323300011253MarineVGALDSNDMYIGDMGVGVYGVLSVATSGTAAMAPTITLYVG*
Ga0181369_107124923300017708MarineMGATDSNDVYIGDMGVAVHGIVSLSTSGAAAMAPTITLYVG
Ga0181370_103783423300017715MarineIRYRVGALDSNDQYIGDMGVGVIGVVSVATSGTGTMAPTITLYLG
Ga0181370_103965113300017715MarineNRSAKGTDIRYRVAALDSNDQYIGDMGVGVHGIVSVATSGTGAMLPTITLYLG
Ga0181405_107726923300017750SeawaterIRYRVGALDSNDQYIGDMGVGVNGIVSVATSGTGAMLPTITLYLG
Ga0181407_117652523300017753SeawaterALDSNDQYIGDMGVGVNGIVSVATSGTGAMLPTITLYLG
Ga0181430_123793523300017772SeawaterNAIHYRVGATDSNDMYIGDMGVPIHGIVSVSVSGVNAPTITLYVG
Ga0211576_1038495823300020438MarineKTAKGTAIRYRVGALDSNDMYIGELGIGVNGVVCCSTSGTGAMLPTITLYVG
Ga0212023_101732913300022061AqueousNAIRYRMGATDSNDVYIGDMGVAVHGIVSLSTSGAAAMAPTITLYVG
Ga0196889_104993713300022072AqueousAIRYRVGALDSNDMYIGELGIGVNGVVCCSTSGTGAMLPTITLYVG
Ga0212022_107186723300022164AqueousGTAIRWRVGATDSQDTYVGDMGVGVFGIVSLATSGAAAMLPTITLYVG
Ga0196899_115792623300022187AqueousQITNKTAKGNAIRYRMGATDSNDVYIGDMGVAVHGIVSLSTSGAAAMAPTITLYVG
Ga0210003_103200613300024262Deep SubsurfaceVGATDSQDTYIGDMGVGVFGIVSLATSGAAAMLPTITLYVG
(restricted) Ga0255048_1007471443300024518SeawaterTNRTAKGTAIRYRVAALDSNDQYIGDMGVGVHGIVSVATSGTGAMLPTITLYLG
(restricted) Ga0255048_1060799623300024518SeawaterNKTAKGTAIRYRVGALDSNDMYIGDMGVGVYGVLSVANSGTGTMTPTITLYVG
Ga0207907_11526623300025043MarineVGALDSNDQYIGDMGVGVHGIVSVATSGTGAMLPTITLYLG
Ga0208012_102538513300025066MarineKGTAIRYRVGATDSNDQYIGDMGVGVHGVVSVATSGTGTMAPTITLYLG
Ga0208669_109978013300025099MarineNKTAKGNAIHYRVGATDSNDMYIGDMGVPIHGIVSVSVSGVNAPTITLYVG
Ga0208793_111512413300025108MarineYRVGATDSNDMYIGELGIGVNGVVCCSTSGTGTMLPTITLYVG
Ga0208919_108610813300025128MarineTAIRYRVGATDSNDMYIGELGIGVNGVVCCSTSGTGTMLPTITLYVG
Ga0209756_128296913300025141MarineGNALRYRVGATDSNDAYIGDMGVAVHGIVSLSTSGAAAMAPTITLYVG
Ga0209337_106960513300025168MarineRVAALDSQDTYIGDMGVGVHGIVSLATSGAAAMAPTITLYVG
Ga0209337_117050033300025168MarineAGTAIRWRVGATDSQDTYVGDMGVGVFGIVSLATSGAAAMLPTITLYVG
Ga0209337_125352023300025168MarineNKTAKGTAIRYRVGALDSNDMYIGDMGVGIYGVLSVANSGTGTMTPTITLYVG
Ga0209337_135432513300025168MarineQDTYIGDMGVGVHGIVSLATSGAAAMAPTITLYVG
Ga0208029_107681113300025264Deep OceanDSNDQYIGDMGVGVHGVVSVATSGTGTMAPTITLYLG
Ga0208813_105008433300025270Deep OceanDSNDQYIGDMGVGVFGVVSVATSGTGTMAPTITLYLG
Ga0208180_107750023300025277Deep OceanKTAKGNAIRYRMGATDSNDVYIGDMGVAVHGIVSLSTSGAAAMAPTITLYVG
Ga0208030_114026723300025282Deep OceanTNKTAKGNAIRYRMGATDSNDVYIGDMGVAVHGIVSLSTSGAAAMAPTITLYVG
Ga0208315_102595713300025286Deep OceanGTAIRYRVAALDSNDQYIGDMGVGVHGIVSVATSGTGAMLPTITLYLG
Ga0208934_101003913300025293Deep OceanSNDQYIGDMGVGVHGVVSVATSGTGTMAPTITLYLG
Ga0208316_105186723300025296Deep OceanRYRVGATDSNDQYIGDMGVGVHGVVSVATSGTGTMAPTITLYLG
Ga0208316_109810613300025296Deep OceanRYRVGATDSNDQYIGDMGVGVFGVVSVATSGTGTMAPTITLYLG
Ga0208181_103854113300025300Deep OceanTNKTAKGTAIRYRVGATDSNDQYIGDMGVGVFGVLSVANSGTGTMTPTITLYVG
Ga0208181_110461023300025300Deep OceanGTAIRYRVGATDSNDQYIGDMGVGVHGVVSVATSGTGSMAPTITLYLG
Ga0208450_108370913300025301Deep OceanVGATDSNDQYIGDMGVGVHGVVSVATSGTGSMAPTITLYLG
Ga0208450_109381613300025301Deep OceanDSNDQYIGDMGVGVHGIVSVATSGTGAMLPTITLYLG
Ga0208684_114818613300025305Deep OceanYRVGATDSNDQYIGDMGVGVHGVVSVATSGTGSMAPTITLYLG
Ga0208148_101230413300025508AqueousTDSQDTYVGDMGVGVFGIVSLATSGAAAMLPTITLYVG
Ga0208149_109211613300025610AqueousQDTYVGDMGVGVFGIVSLATSGAAAMLPTITLYVG
Ga0208643_108892723300025645AqueousRWRVGATDSQDTYIGDMGVGVFGIVSLATSGAAAMLPTITLYVG
Ga0208899_105790813300025759AqueousGATDSNDVYIGDMGVAVHGIVSLSTSGAAAMAPTITLYVG
Ga0209757_1007836033300025873MarineVGALDSSDQYIGDMGVGVIGILSVATSGTGTMAPTITLYVG
Ga0207988_107403023300026206MarineALDSNDQYIGDMGVGVIGVVSVATSGTGTMAPTITLYLG
Ga0208278_114681713300026267MarineKGTAIRYRVGALDSNDQYIGDMGVGVIGVVSVATSGTGTMAPTITLYLG
Ga0209383_111129123300027672MarineTNKTAVGTAIRWRVGATDSQDTYIGDMGVGVHGIVSLATSGAAAMAPTITLYVG
Ga0209089_1070758413300027838MarineVGTAIRWRVGATDSQDTYIGDMGVGVHGIVSLATSGAAAMAPTITLYVG
Ga0209501_1029258433300027844MarineGTAIRWRVGATDSQDTYIGDMGVGVHGIVSLATSGAAAMAPTITLYVG
Ga0209402_1004170413300027847MarineGATDSQDTYIGDMGVGVHGIVSLATSGAAAMAPTITLYVG
(restricted) Ga0255053_1051389123300027868SeawaterGATDSQDTYVGDMGVGVFGIVSLATSGAAAMAPTITLYVG
Ga0256381_1000431103300028018SeawaterQITNRSAKGTAIRYRVGATDSNDQYIGDMGVGVHGVVSVATSGTGTMAPTITLYLG
Ga0256382_109054923300028022SeawaterQITNKSAKGTAIRYRVGATDSNDQYIGDMGVGVFGIVSVATSGTGTMAPTITLYLG
Ga0307488_1067789213300031519Sackhole BrineALDSNDMYIGELGVPAYGVVSCSTSGTGAMLPHITLYVG
Ga0302118_1039770613300031627MarineSQDTYIGDMGVGVHGIVSLATSGAAAMAPTITLYVG
Ga0310120_1045195913300031803MarineTAIRYRVGALDSNDQYIGDMGVGVHGVVSVATSGTGTMLPTITLYIG
Ga0316202_1024431413300032277Microbial MatIRWRVGATDSQDTYVGDMGVGVFGIVSLATSGAAAMLPTITLYVG
Ga0314858_088616_638_7783300033742Sea-Ice BrineAIRYRVAALDSQDTYIGDMGVGIHGIVSLATSGAAAMAPTITLYVG
Ga0326756_031410_2_1633300034629Filtered SeawaterNKTAKGTAIRYRVGALDSNDQYIGDMGIGVHGIVSVATSGTGAMLPTITLYLG


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