NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F089526

Metagenome Family F089526

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F089526
Family Type Metagenome
Number of Sequences 109
Average Sequence Length 47 residues
Representative Sequence MNLNKEQLNDVRHAVAYYMYHHVSISNPRYNDYEVILQLLSETKEEK
Number of Associated Samples 51
Number of Associated Scaffolds 108

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 43.12 %
% of genes near scaffold ends (potentially truncated) 24.77 %
% of genes from short scaffolds (< 2000 bps) 84.40 %
Associated GOLD sequencing projects 46
AlphaFold2 3D model prediction Yes
3D model pTM-score0.67

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (66.055 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(40.367 % of family members)
Environment Ontology (ENVO) Unclassified
(81.651 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(77.982 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 45.33%    β-sheet: 0.00%    Coil/Unstructured: 54.67%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.67
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 108 Family Scaffolds
PF00124Photo_RC 17.59
PF00504Chloroa_b-bind 8.33
PF07681DoxX 6.48
PF02945Endonuclease_7 5.56
PF05315ICEA 3.70
PF05869Dam 2.78
PF13392HNH_3 1.85
PF02867Ribonuc_red_lgC 0.93
PF01503PRA-PH 0.93

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 108 Family Scaffolds
COG2259Uncharacterized membrane protein YphA, DoxX/SURF4 familyFunction unknown [S] 6.48
COG4270Uncharacterized membrane proteinFunction unknown [S] 6.48
COG0209Ribonucleotide reductase alpha subunitNucleotide transport and metabolism [F] 0.93


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A66.06 %
All OrganismsrootAll Organisms33.94 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2189573028|GS313G0146KB_1112079340936Not Available796Open in IMG/M
3300000116|DelMOSpr2010_c10073146Not Available1385Open in IMG/M
3300001450|JGI24006J15134_10019890Not Available3105Open in IMG/M
3300001450|JGI24006J15134_10027028Not Available2563Open in IMG/M
3300001450|JGI24006J15134_10090170All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae1124Open in IMG/M
3300001450|JGI24006J15134_10092780All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae1101Open in IMG/M
3300002231|KVRMV2_101475387Not Available783Open in IMG/M
3300004448|Ga0065861_1117663All Organisms → Viruses → Predicted Viral1354Open in IMG/M
3300004448|Ga0065861_1218165Not Available524Open in IMG/M
3300004457|Ga0066224_1190612Not Available547Open in IMG/M
3300004460|Ga0066222_1061359All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria758Open in IMG/M
3300004461|Ga0066223_1103581All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes541Open in IMG/M
3300005239|Ga0073579_1017314All Organisms → Viruses → Predicted Viral1907Open in IMG/M
3300005239|Ga0073579_1091462Not Available1557Open in IMG/M
3300005239|Ga0073579_1165475Not Available968Open in IMG/M
3300005239|Ga0073579_1190873Not Available86332Open in IMG/M
3300005239|Ga0073579_1190873Not Available86332Open in IMG/M
3300005239|Ga0073579_1325411Not Available836Open in IMG/M
3300006024|Ga0066371_10292795Not Available511Open in IMG/M
3300006735|Ga0098038_1240599Not Available574Open in IMG/M
3300006752|Ga0098048_1093690Not Available912Open in IMG/M
3300006752|Ga0098048_1208318Not Available576Open in IMG/M
3300006789|Ga0098054_1112975All Organisms → Viruses → Predicted Viral1013Open in IMG/M
3300006793|Ga0098055_1010432All Organisms → Viruses → Predicted Viral4195Open in IMG/M
3300006793|Ga0098055_1027696Not Available2368Open in IMG/M
3300006793|Ga0098055_1037905All Organisms → Viruses1978Open in IMG/M
3300006793|Ga0098055_1105438Not Available1099Open in IMG/M
3300006793|Ga0098055_1106276Not Available1094Open in IMG/M
3300006793|Ga0098055_1132026Not Available967Open in IMG/M
3300006793|Ga0098055_1181997All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Podoviridae802Open in IMG/M
3300006793|Ga0098055_1206856Not Available744Open in IMG/M
3300006793|Ga0098055_1212116All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Synechococcaceae → Synechococcus → unclassified Synechococcus → Synechococcus sp. ROS8604734Open in IMG/M
3300006793|Ga0098055_1385900All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae519Open in IMG/M
3300006793|Ga0098055_1397189All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales510Open in IMG/M
3300006919|Ga0070746_10464227Not Available560Open in IMG/M
3300006921|Ga0098060_1102785All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes809Open in IMG/M
3300006921|Ga0098060_1136545Not Available683Open in IMG/M
3300006921|Ga0098060_1174406Not Available592Open in IMG/M
3300006924|Ga0098051_1023090All Organisms → Viruses → Predicted Viral1790Open in IMG/M
3300006925|Ga0098050_1074156Not Available879Open in IMG/M
3300006925|Ga0098050_1087867Not Available799Open in IMG/M
3300006925|Ga0098050_1099712All Organisms → Viruses743Open in IMG/M
3300006925|Ga0098050_1153295All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Llyrvirus → Synechococcus virus SSKS1580Open in IMG/M
3300006925|Ga0098050_1173256All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales541Open in IMG/M
3300007647|Ga0102855_1188409Not Available551Open in IMG/M
3300007863|Ga0105744_1199566Not Available503Open in IMG/M
3300007954|Ga0105739_1121571Not Available608Open in IMG/M
3300009058|Ga0102854_1042372All Organisms → Viruses1310Open in IMG/M
3300009529|Ga0114919_11069581Not Available542Open in IMG/M
3300009593|Ga0115011_10202220All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae1468Open in IMG/M
3300010150|Ga0098056_1198866Not Available670Open in IMG/M
3300017708|Ga0181369_1032621Not Available1221Open in IMG/M
3300017708|Ga0181369_1087585Not Available657Open in IMG/M
3300017725|Ga0181398_1000040Not Available34051Open in IMG/M
3300017740|Ga0181418_1145479Not Available570Open in IMG/M
3300017741|Ga0181421_1146400Not Available611Open in IMG/M
3300017744|Ga0181397_1008947Not Available3126Open in IMG/M
3300017744|Ga0181397_1013839All Organisms → Viruses → Predicted Viral2440Open in IMG/M
3300017744|Ga0181397_1035157Not Available1425Open in IMG/M
3300017757|Ga0181420_1066088Not Available1143Open in IMG/M
3300017757|Ga0181420_1210710All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales561Open in IMG/M
3300017762|Ga0181422_1123158All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Llyrvirus → Synechococcus virus SSKS1803Open in IMG/M
3300017762|Ga0181422_1129643All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae779Open in IMG/M
3300017762|Ga0181422_1191814Not Available618Open in IMG/M
3300017764|Ga0181385_1237120Not Available548Open in IMG/M
3300017767|Ga0181406_1236720Not Available537Open in IMG/M
3300017776|Ga0181394_1041868All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales1568Open in IMG/M
3300017781|Ga0181423_1280877Not Available617Open in IMG/M
3300017781|Ga0181423_1346817All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales541Open in IMG/M
3300020417|Ga0211528_10057073Not Available1678Open in IMG/M
3300020451|Ga0211473_10613279Not Available550Open in IMG/M
3300021185|Ga0206682_10319092Not Available673Open in IMG/M
(restricted) 3300024255|Ga0233438_10007993Not Available8047Open in IMG/M
(restricted) 3300024255|Ga0233438_10029623Not Available3094Open in IMG/M
(restricted) 3300024255|Ga0233438_10034354Not Available2783Open in IMG/M
(restricted) 3300024255|Ga0233438_10082409Not Available1516Open in IMG/M
(restricted) 3300024255|Ga0233438_10100879Not Available1318Open in IMG/M
(restricted) 3300024255|Ga0233438_10107962Not Available1257Open in IMG/M
(restricted) 3300024255|Ga0233438_10118964Not Available1175Open in IMG/M
(restricted) 3300024255|Ga0233438_10156371Not Available973Open in IMG/M
(restricted) 3300024255|Ga0233438_10186463All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Omegavirus → Omegavirus littlee862Open in IMG/M
(restricted) 3300024255|Ga0233438_10206589Not Available803Open in IMG/M
(restricted) 3300024255|Ga0233438_10209280Not Available795Open in IMG/M
(restricted) 3300024255|Ga0233438_10220270All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Llyrvirus → Synechococcus virus SSKS1768Open in IMG/M
(restricted) 3300024255|Ga0233438_10245667Not Available710Open in IMG/M
(restricted) 3300024255|Ga0233438_10276646Not Available652Open in IMG/M
(restricted) 3300024255|Ga0233438_10309584Not Available602Open in IMG/M
(restricted) 3300024255|Ga0233438_10387374Not Available512Open in IMG/M
(restricted) 3300024518|Ga0255048_10073399All Organisms → Viruses → Predicted Viral1701Open in IMG/M
(restricted) 3300024518|Ga0255048_10624334All Organisms → Viruses521Open in IMG/M
(restricted) 3300024520|Ga0255047_10244534Not Available911Open in IMG/M
3300025085|Ga0208792_1019663Not Available1416Open in IMG/M
3300025085|Ga0208792_1069789Not Available637Open in IMG/M
3300025108|Ga0208793_1010662All Organisms → Viruses → Predicted Viral3626Open in IMG/M
3300025108|Ga0208793_1015898All Organisms → cellular organisms → Bacteria2773Open in IMG/M
3300025108|Ga0208793_1038432Not Available1541Open in IMG/M
3300025108|Ga0208793_1138434All Organisms → Viruses652Open in IMG/M
3300025108|Ga0208793_1156828Not Available598Open in IMG/M
3300025168|Ga0209337_1025161Not Available3387Open in IMG/M
3300025168|Ga0209337_1161900Not Available955Open in IMG/M
3300025668|Ga0209251_1173083All Organisms → Viruses544Open in IMG/M
3300025879|Ga0209555_10133491Not Available1043Open in IMG/M
3300027906|Ga0209404_10074553Not Available1963Open in IMG/M
3300027906|Ga0209404_10611004Not Available730Open in IMG/M
3300028194|Ga0257106_1068401All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales1312Open in IMG/M
3300028197|Ga0257110_1002589Not Available8415Open in IMG/M
3300032073|Ga0315315_10148630All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales2185Open in IMG/M
3300032073|Ga0315315_10290325All Organisms → Viruses → Predicted Viral1524Open in IMG/M
3300032073|Ga0315315_10467933Not Available1169Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine40.37%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater17.43%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater14.68%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine7.34%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine4.59%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater3.67%
Estuary WaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water1.83%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine1.83%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine1.83%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine1.83%
Deep SubsurfaceEnvironmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface0.92%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous0.92%
Marine EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Marine Estuarine0.92%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine0.92%
Marine SedimentEnvironmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment0.92%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
2189573028Estuarine microbial communities from Columbia River, sample from South Channel ETM site, CMGS313-FOS-0p8-ETM-15mEnvironmentalOpen in IMG/M
3300000116Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010EnvironmentalOpen in IMG/M
3300001450Marine viral communities from the Pacific Ocean - LP-53EnvironmentalOpen in IMG/M
3300002231Marine sediment microbial communities from Santorini caldera mats, Greece - red matEnvironmentalOpen in IMG/M
3300004448Marine viral communities from Newfoundland, Canada BC-1EnvironmentalOpen in IMG/M
3300004457Marine viral communities from Newfoundland, Canada MC-1EnvironmentalOpen in IMG/M
3300004460Marine viral communities from Newfoundland, Canada BC-1EnvironmentalOpen in IMG/M
3300004461Marine viral communities from Newfoundland, Canada BC-2EnvironmentalOpen in IMG/M
3300005239Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of MaineEnvironmentalOpen in IMG/M
3300006024Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_DCM_ad_63m_LV_BEnvironmentalOpen in IMG/M
3300006735Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaGEnvironmentalOpen in IMG/M
3300006752Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaGEnvironmentalOpen in IMG/M
3300006789Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaGEnvironmentalOpen in IMG/M
3300006793Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaGEnvironmentalOpen in IMG/M
3300006919Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21EnvironmentalOpen in IMG/M
3300006921Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaGEnvironmentalOpen in IMG/M
3300006924Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaGEnvironmentalOpen in IMG/M
3300006925Marine viral communities from the Subarctic Pacific Ocean - 14_ETSP_OMZ_AT15311 metaGEnvironmentalOpen in IMG/M
3300007647Estuarine microbial communities from the Columbia River estuary - metaG 1370B-02EnvironmentalOpen in IMG/M
3300007863Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1459B_0.2umEnvironmentalOpen in IMG/M
3300007954Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1373B_0.2umEnvironmentalOpen in IMG/M
3300009058Estuarine microbial communities from the Columbia River estuary - metaG 1370A-02EnvironmentalOpen in IMG/M
3300009529Deep subsurface microbial communities from Black Sea to uncover new lineages of life (NeLLi) - Black_00105 metaGEnvironmentalOpen in IMG/M
3300009593Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 MetagenomeEnvironmentalOpen in IMG/M
3300010150Marine viral communities from the Subarctic Pacific Ocean - 17B_ETSP_OMZ_AT15314_CsCl metaGEnvironmentalOpen in IMG/M
3300017708Marine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaGEnvironmentalOpen in IMG/M
3300017725Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 21 SPOT_SRF_2011-04-29EnvironmentalOpen in IMG/M
3300017740Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 41 SPOT_SRF_2013-03-13EnvironmentalOpen in IMG/M
3300017741Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 44 SPOT_SRF_2013-06-19EnvironmentalOpen in IMG/M
3300017744Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 20 SPOT_SRF_2011-02-23EnvironmentalOpen in IMG/M
3300017757Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 43 SPOT_SRF_2013-05-22EnvironmentalOpen in IMG/M
3300017762Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 45 SPOT_SRF_2013-07-18EnvironmentalOpen in IMG/M
3300017764Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 8 SPOT_SRF_2010-02-11EnvironmentalOpen in IMG/M
3300017767Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 29 SPOT_SRF_2011-12-20EnvironmentalOpen in IMG/M
3300017776Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 17 SPOT_SRF_2010-11-23EnvironmentalOpen in IMG/M
3300017781Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 46 SPOT_SRF_2013-08-14EnvironmentalOpen in IMG/M
3300020417Marine microbial communities from Tara Oceans - TARA_B100000073 (ERX556034-ERR599082)EnvironmentalOpen in IMG/M
3300020451Marine microbial communities from Tara Oceans - TARA_B100001778 (ERX555927-ERR598996)EnvironmentalOpen in IMG/M
3300021185Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015EnvironmentalOpen in IMG/M
3300024255 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_10_MGEnvironmentalOpen in IMG/M
3300024518 (restricted)Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_2EnvironmentalOpen in IMG/M
3300024520 (restricted)Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_1EnvironmentalOpen in IMG/M
3300025085Marine viral communities from the Subarctic Pacific Ocean - 14_ETSP_OMZ_AT15311 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025108Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025168Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)EnvironmentalOpen in IMG/M
3300025668Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI073_LV_100m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025879Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_85LU_5_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300027906Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome (SPAdes)EnvironmentalOpen in IMG/M
3300028194Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_10mEnvironmentalOpen in IMG/M
3300028197Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_10mEnvironmentalOpen in IMG/M
3300032073Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 3416EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
GS313G0146KB_006274602189573028Marine EstuarineMTLNNEQLNDVKHAVAYYMYHHVSIQNPRYNDYEVILQLLSETKEKK
DelMOSpr2010_1007314623300000116MarineMNLNKEQLNDVRHAVAYYMYHHVSITNPRYNDYEVILQLLSETKEEK*
JGI24006J15134_1001989023300001450MarineMNLNKEQLNDVRHAVAYYMYHHVSISNPRYNDYEVILQVLSDIKEEK*
JGI24006J15134_1002702853300001450MarineMDLNREQLNDVMHAVSFYMHRHVSIQNPRYNDYEVILQVLNDIKKEK*
JGI24006J15134_1009017023300001450MarineMTLNKEQLNDVRHAVAYYMYHHVSISNPRYNDYEVILQLLSDSEVKK*
JGI24006J15134_1009278023300001450MarineMTLNNEQLNDVKHAVAYYMYHHVSIQNPRYNDYEVILQLLSETKAKK*
KVRMV2_10147538723300002231Marine SedimentMNFNDEQLRDIRAAVKYYMQRHVSINNPRYNDYEVILQLLTKSIKEHK*
Ga0065861_111766333300004448MarineMNLNKEQLNDVRHAVAYYMYHHVSINNPRYNDYEVILQLLSETKEEK*
Ga0065861_121816513300004448MarineMNLNKEQLNDVRHAVAYYMYHHVSISNPRYNDYEVILQLLSEHKKEAK*
Ga0066224_119061223300004457MarineMNLNKEQLNDVRHAMAYYMYHHVSISNPRYNDYEVILQLLSELKEEK*
Ga0066222_106135933300004460MarineMNLNKEQLNDVRHAVAYYMYHHVSISNPRYNDYEVILQLLSELKEEK*
Ga0066223_110358123300004461MarineMNLNKEQLNDVRHAVAYYMYHHISVNNPRYNDYEVILQLLSETKEEK*
Ga0073579_101731423300005239MarineMNLNKEQLNDLRYVLAHYMQNYVSITNPRYNDYEVILQLLSETKEEK*
Ga0073579_109146223300005239MarineMNLNKEQLNDVRHAVAYYMYHHVSVNNPRYNEYEVILQLLSDTKEETK*
Ga0073579_116547513300005239MarineKEQLNDVKHAVAYYMYHHVSVNNPRYNEYEVILQLLSETKEEK*LQ*
Ga0073579_1190873853300005239MarineMNLNKEQLNDVKHAVAYYMYHHVSVNNPRYNDYEVILQLLSETREEK*
Ga0073579_1190873873300005239MarineMNLNKEQLNDVKHAVAYYMYHHVSISNPRYNDYEVILQLLNEYKDESK*
Ga0073579_132541113300005239MarineMNDVRHAVAYYMYHHVSVNNPRYNEYEVILQLLNGTNEETK*
Ga0066371_1029279523300006024MarineMELKQEQLNDVKAAVRYYQQHHISPTNPRYKDYEVILQLLEKDKDE*
Ga0098038_124059923300006735MarineMDDLSLEQLNDIRAAVTHYQHHQVSISNPRYKDYEVILQLLEKRKE
Ga0098048_109369013300006752MarineMNLNKEQLNDVKHAVAYYMYHHVSISNPRYNDYEV
Ga0098048_120831813300006752MarineMNLNKEQLNDVKHAVAYYMYHHVSITNPRYNDYEVILQLLSELKEEKK*
Ga0098054_111297543300006789MarineMNLTKEQLNDVKHAVAYYMYHHVSIQNPRYNDYEVILQLLSETKEEK*
Ga0098055_101043273300006793MarineMMNLNKEQLNDVKHAVAYYMYHHVSITNPRYNDYEVILQLLSETKEEK*
Ga0098055_102769683300006793MarineMNLNKEQLNDVKHAVAYYMYHHVSIQNPRYNDYEVILQLLSETKEEK*
Ga0098055_103790533300006793MarineMNLNKEQLNDVRHAVAYYMYHHVSITNPRYNDYEVILQLLSELKEETK*
Ga0098055_110543833300006793MarineLLGSFNGPLIIMKLNKEQLNDVKHAVAYYMHHHVSIQNPRYNDYEVILQLLSETKEEK*
Ga0098055_110627623300006793MarineMNLNKEQLNDVKHAVAYYMYHHVSISNPRYNDYEVILQLLSETKEVK*LQ*
Ga0098055_113202633300006793MarineMTLNKEQLNDVKHAVAYYMYHHVSIQNPRYNDYEVILQLLSETKEEK*LQ*
Ga0098055_118199733300006793MarineAFFNVMNLNKEQLNDVKHAVAYYMYHHVSISNPRYNDYEVILQLLSETKEEAK*
Ga0098055_120685633300006793MarineCHKDYRQMNLNKEQLNDVKHAVAYYMYHHVSISNPRYNDYEVILQLLSETKEETK*
Ga0098055_121211633300006793MarineMNLNKEQLNDVRHAVAYYMYHHVSISNPRYNDYEVILQLLSEL
Ga0098055_138590023300006793MarineMNLTKEQLNDVRHAVAYYMYHHVSIQNPRYNDYEVILQLLTEYKNETL*
Ga0098055_139718923300006793MarineMNLNKEQLNDVRHAVAYYMYHHVSISNPRYNDYEVILQLLSELKEKK*
Ga0070746_1046422723300006919AqueousMKLTKEQLNDVQHAVAYYMYHHVSINNPRYNDYEVILQLLSDYKDTK*
Ga0098060_110278533300006921MarineMNLNKEQLNDVKHAVAYYMYHHVSITNPRYNDYEVILQLLSELKEDNDCNN*
Ga0098060_113654533300006921MarineMKLNKEQLNDVKHAVAYYMYHHVSIQNPRYNDYEVILQLLSETKEEK*
Ga0098060_117440623300006921MarineMMNLNKEQLNDVKHAVAYYMYHHVSISNPRYNDYEVILQLLSEYKAELNDCNN*
Ga0098051_102309033300006924MarineMNLNKEQLNDVKHAVAYYMYHHVSITNPRYNDYEVILQLLSETKEEK*
Ga0098050_107415613300006925MarineLLGSFNGPSIIMKLNKEQLNDVKHAVAYYMYHHVSIQNPRYNDYEVILQLLSETKEEK*
Ga0098050_108786713300006925MarineMNLNKEQLNDVKHAVAYYMYHHVSITNPRYNDYEVILQLLSELK
Ga0098050_109971223300006925MarineMNLNKEQLNDVKHAVAYYMYHHVSISNPRYNDYEVILQLLSETKEEAK*
Ga0098050_115329523300006925MarineMALNKEQLNDVKHAVAYYMYHHVSIQNPRYNDYEVILQLL
Ga0098050_117325623300006925MarineMNLNKEQLNDVKHAVAYYMYHHVSIQNPRYNDYEVILQLLSETKEEK*L*
Ga0102855_118840933300007647EstuarineMTLNKEQLNDVKHAVAYYMYHHVSIQNPRYNDYEVILQLLSETKE
Ga0105744_119956613300007863Estuary WaterMTLNKEQLTDLKHAVSYYMSQQVSIQNPRYNDYEVILQL
Ga0105739_112157113300007954Estuary WaterMTLNKEQLNDVRHAVAYYMFHHVSISNPRYNDYEVILQL
Ga0102854_104237233300009058EstuarineMTLNKEQLNDVKHAVAYYMYHHVSIQNPRYNDYEVILQLLSETKEEK*
Ga0114919_1106958123300009529Deep SubsurfaceMNLNKEQLNDVRHAVAYYMYHHVSINNPRYQDYEVILQLLSDTKEETK*
Ga0115011_1020222013300009593MarineMNLNKEQLNDVRHAVAYYMYHHVSISNPRYKDYEVILQL
Ga0098056_119886623300010150MarineMNLNKEQLNDVRHAVAYYMYHHVSITNPRYNDYEVILQLLSELKEETK
Ga0181369_103262143300017708MarineKFFNAMNLNKEQLNDVRHAVAYYMYHHVSISNPRYNDYEVILQLLSELKEDNDCNNE
Ga0181369_108758523300017708MarineMMNLNKEQLNDVKHAVAYYMYHHVSIQNPRYNDYEVILQLLSETKEEK
Ga0181398_1000040373300017725SeawaterMNLNKEQLNDVRHAVAYYMYHHVSIQNPRYNDYEVILQLLSDTKEEAK
Ga0181418_114547923300017740SeawaterMNLNKEQLNDVKHAVAYYMYHHVSIQNPRYNDYEVILQLLSETKEKK
Ga0181421_114640013300017741SeawaterMTLNKEQLNDVKHAVAYYMYHHVSIQNPRYNDYEVILQLLSETKATENDDSN
Ga0181397_100894783300017744SeawaterMTLNKEQLNDVKHAVAYYMYHHVSIQNPRYNDYEVILQLLSETKGKENDDSD
Ga0181397_101383923300017744SeawaterMNLNKEQLNDVRHAVAYYMYHHVSISNPRYNDYEVILQLLSETKEETK
Ga0181397_103515753300017744SeawaterRAFFNAMNLNKEQLNDVRHAVAYYMYHHVSISNPRYNDYEVILQLLSETKAEK
Ga0181420_106608833300017757SeawaterMNLNKEQLNDVRHAVAYYMYHHVSISNPRYNDYEVILQLLSETKEE
Ga0181420_121071023300017757SeawaterMNLNKEQLNDVRHAVAYYMYHHVSISNPRYNDYEVILQLLSDTKEEK
Ga0181422_112315833300017762SeawaterMNLNKEQLNDVRHAVAYYMYHHVSIQNPRYDDYEVILQLLNETKEETK
Ga0181422_112964323300017762SeawaterMNLNKEQLNDVRHAVAYYMYHHVSISNPRYNDYEVILQLLSETKGETK
Ga0181422_119181423300017762SeawaterMTLNKEQLNDVKHAVAYYMYHHVSISNPRYSEYEAILQLLSETKATENDDSN
Ga0181385_123712013300017764SeawaterMALTKEQLNDVKHAVAYYMYHHVSIQNPRYNDYEVILQLLSETKEETK
Ga0181406_123672023300017767SeawaterMNFNKEQLNDVRHAVAYYMYHHVSIKNPRYNDYEVILQLLSETKGKENDDSNXRRR
Ga0181394_104186833300017776SeawaterMTLNKEQLNDVKHAVAYYMYHHVSISNPRYSDYEAILQLLSETKATENDDSN
Ga0181423_128087713300017781SeawaterTLNKEQLNDVKHAVAYYMYHHVSIHNPRYNDYEVILQLLSETKEEK
Ga0181423_134681723300017781SeawaterMTLNNEQLNDVKHAVAYYMYHHVSIQNPRYNDYEVILQLLSETKAKK
Ga0211528_1005707323300020417MarineMDLNQEQLNDVRAAVKFYQQHHISPTNPRYKEYEVILQLLEKYKDDQ
Ga0211473_1061327923300020451MarineMNFNDEQLRDIRAAVKYYMQRHVSINNPRYNDYEVILQLLTKSIKEHK
Ga0206682_1031909233300021185SeawaterMTLNKEQLNDVKHAVAYYMYHHVSIQNPRYNDYEVILQLLSETKEEK
(restricted) Ga0233438_1000799323300024255SeawaterMNLNKEQLNDVKHAVAYYMYHHVSIQNPRYNDYEVILQLLSETKEETK
(restricted) Ga0233438_1002962363300024255SeawaterMGLTKEQLNDVKHAVAYYMYHHVSISNPRYNDYEVILQLLSETKEEKXP
(restricted) Ga0233438_1003435433300024255SeawaterMNLNKEQLNDVRHAVAYYMYHHVSISNPRYNDYEVILQLLSECNEQNDCNN
(restricted) Ga0233438_1008240933300024255SeawaterMDLTNEQLNDVRHAVAYYMYHHVSVKNPRYNDYEVILHLLSETKEETK
(restricted) Ga0233438_1010087923300024255SeawaterMNLNKEQLNDVRHAVAYYMYHHVSISNPRYNDYEVILQLLSETKEEKXLK
(restricted) Ga0233438_1010796213300024255SeawaterMNLNKEQLNDVRHAVAYYMYHHVSISNPRYNDYEVILQL
(restricted) Ga0233438_1011896413300024255SeawaterMNLNKEQLNDVKHAVAYYMYHHVSIQNPRYNDYEVIL
(restricted) Ga0233438_1015637123300024255SeawaterMNLNKEQLNDVKHAVAYYMYHHVSIQNPRYNDYEVILQLLNELKGEEND
(restricted) Ga0233438_1018646333300024255SeawaterMNLNKEQLNDVRHAVAYYMYHHVSIQNPRYNDYEVILQLLSETKEETK
(restricted) Ga0233438_1020658933300024255SeawaterMTLNKEQLNDVKHAVAYYMYHHVSIQNPRYNDYEVILQLLSETKAKENDDSN
(restricted) Ga0233438_1020928023300024255SeawaterMNLNKEQLNDVRHAVAYYMYHHVSISNPRYDDYEVILQLLSETKEEK
(restricted) Ga0233438_1022027013300024255SeawaterMALTKEQLNDVRHAVAYYMYHHVSISNPRYNDYEVILQLLSETKEETKXL
(restricted) Ga0233438_1024566723300024255SeawaterMKLTKEQLNDVKHAVAYYMYHHVSIQNPRYSDYEVILQLLSETKEEK
(restricted) Ga0233438_1027664623300024255SeawaterMNLNKEQLNDVRHAVAYYMYHHVSISNPRYTDYEVILQLLSETKEEK
(restricted) Ga0233438_1030958433300024255SeawaterAVAYYMYHHVSISNPRYNDYEVILQLLSDTKEETQ
(restricted) Ga0233438_1038737423300024255SeawaterMALTKEQLNDVRHAVAYYMYHHVSISNPRYNDYEVILQLLSETKEEKXP
(restricted) Ga0255048_1007339933300024518SeawaterMNLTKEQLNDVKHAVAYYMYHHVSINNPRYNDYEVILQLLSETKEEK
(restricted) Ga0255048_1062433423300024518SeawaterMTLNKEQLNDVKHAVAYYMYHHVSIQNPRYNDYEVILQLLSETKGKENDDSN
(restricted) Ga0255047_1024453423300024520SeawaterMKLTNEQLNDVRHAVAYYMYHHVSVKNPRFNDYEVILQLLSETKE
Ga0208792_101966313300025085MarineMNLNKEQLNDVKHAVAYYMYHHVSISNPRYNDYEVI
Ga0208792_106978913300025085MarineMNLNKEQLNDVRHAVAYYMYHHVSISNPRYNDYEVILQLLSE
Ga0208793_101066243300025108MarineMMNLNKEQLNDVKHAVAYYMYHHVSITNPRYNDYEVILQLLSETKEEK
Ga0208793_101589813300025108MarineMNLNKEQLNDVRHAVAYYMYHHVSISNPRYNDYEVILQLLSELKEKK
Ga0208793_103843213300025108MarineMALNKEQLNDVKHAVAYYMYHHVSITNPRYNDYEVILQLLSETKEEKXLQ
Ga0208793_113843423300025108MarineMNLNKEQLNDVKHAVAYYMYHHVSIQNPRYNDYEVILQLLSETKEEK
Ga0208793_115682823300025108MarineMKLNKEQLNDVKHAVAYYMHHHVSIQNPRYNDYEVILQLLSETKEEK
Ga0209337_102516123300025168MarineMNLNKEQLNDVRHAVAYYMYHHVSISNPRYNDYEVILQVLSDIKEEK
Ga0209337_116190023300025168MarineMTLNKEQLNDVKHAVAYYMYHHVSITNPRYNDYEVILQVLSDIKKEK
Ga0209251_117308323300025668MarineMNLNKEQLNDVRHAVAYYMYHHVSISNPRYNDYEVILQLLSETKEEK
Ga0209555_1013349113300025879MarineMALTKEQLNDVRHAVAYYMYHHVSISNPRYNDYEVILQLLSETKEEK
Ga0209404_1007455333300027906MarineMNFNDEQLRDIRAAVKYYMQRHVSIKNPRYDDYEVILQLLSKSITEHK
Ga0209404_1061100423300027906MarineMNLNKEQLNDVRHAVAYYMYHHVSISNPRYNDYEVI
Ga0257106_106840123300028194MarineMNLNKEQLNDLRFVLAHYMQKNVSISNPRYKDYEVILQLLNETEVSK
Ga0257110_100258923300028197MarineMNLNKEQLNDVRHAVAYYMYHHVSISNPRYNDYEVILQLLSEYKNETK
Ga0315315_1014863053300032073SeawaterMTLNKEQLNDVKHAVAYYMYHHVSIQNPRYNDYEVILQLLSETKEKK
Ga0315315_1029032543300032073SeawaterMNLSKEQLNDVKHAVAYYMYHHVSIQNPRYNDYEVILQLLSETKEETK
Ga0315315_1046793353300032073SeawaterKEQLNDVRHAVAYYMYHHVSISNPRYNDYEVILQLLSETKAEK


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