Metagenome / Metatranscriptome Family F089581

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F089581
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	41 residues
Representative Sequence	LLDQIAEPLRVAARADEVVRGPAEHPSGVDGITVGITV
Number of Associated Samples	96
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	96.33 %
% of genes from short scaffolds (< 2000 bps)	91.74 %
Associated GOLD sequencing projects	94
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.36

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (51.376 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (25.688 % of family members)
Environment Ontology (ENVO)	Unclassified (22.018 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (55.046 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 18.18% β-sheet: 6.06% Coil/Unstructured: 75.76%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.36
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.36
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF04909	Amidohydro_2	32.11
PF13280	WYL	5.50
PF12802	MarR_2	4.59
PF10009	DUF2252	2.75
PF03706	LPG_synthase_TM	0.92
PF13412	HTH_24	0.92
PF01022	HTH_5	0.92
PF00005	ABC_tran	0.92
PF01458	SUFBD	0.92
PF03781	FGE-sulfatase	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG0392	Predicted membrane flippase AglD2/YbhN, UPF0104 family	Cell wall/membrane/envelope biogenesis [M]	0.92
COG0719	Fe-S cluster assembly scaffold protein SufB	Posttranslational modification, protein turnover, chaperones [O]	0.92
COG1262	Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain	Posttranslational modification, protein turnover, chaperones [O]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	51.38 %
Unclassified	root	N/A	48.62 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	51.38 %
Unclassified	root	N/A	48.62 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	51.38 %
Unclassified	root	N/A	48.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.62 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	44.95 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.62 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	44.95 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.83 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.62 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	43.12 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.92 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.62 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	3.67 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	2.75 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	1.83 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	0.92 %
Hyphomicrobiales incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.62 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	2.75 %
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	1.83 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1.83 %
Pseudorhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes	0.92 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.92 %
Nocardiopsaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.62 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	2.75 %
Amycolatopsis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis	1.83 %
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	1.83 %
Pseudorhodoplanes sinuspersici	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes → Pseudorhodoplanes sinuspersici	0.92 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.92 %
Nocardiopsaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.62 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	2.75 %
Amycolatopsis pithecellobii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → Amycolatopsis pithecellobii	1.83 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1.83 %
Pseudorhodoplanes sinuspersici	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes → Pseudorhodoplanes sinuspersici	0.92 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.92 %
Nocardiopsaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001356\|JGI12269J14319_10363038	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	508	Open in IMG/M
3300003218\|JGI26339J46600_10134304	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	584	Open in IMG/M
3300003505\|JGIcombinedJ51221_10286098	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	670	Open in IMG/M
3300004635\|Ga0062388_100339827	Not Available	1274	Open in IMG/M
3300005338\|Ga0068868_101570544	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	617	Open in IMG/M
3300005434\|Ga0070709_10998792	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	665	Open in IMG/M
3300005434\|Ga0070709_11487671	Not Available	550	Open in IMG/M
3300005454\|Ga0066687_10599202	Not Available	654	Open in IMG/M
3300005455\|Ga0070663_100012280	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	5412	Open in IMG/M
3300005535\|Ga0070684_100525803	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1097	Open in IMG/M
3300005602\|Ga0070762_10535398	Not Available	771	Open in IMG/M
3300005602\|Ga0070762_11186779	Not Available	528	Open in IMG/M
3300005610\|Ga0070763_10715058	Not Available	587	Open in IMG/M
3300006173\|Ga0070716_101252538	Not Available	598	Open in IMG/M
3300006176\|Ga0070765_100296873	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1492	Open in IMG/M
3300006573\|Ga0074055_11870376	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	509	Open in IMG/M
3300006755\|Ga0079222_10564488	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	857	Open in IMG/M
3300006806\|Ga0079220_10849564	Not Available	699	Open in IMG/M
3300006881\|Ga0068865_100207835	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1523	Open in IMG/M
3300006893\|Ga0073928_10164631	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1774	Open in IMG/M
3300006954\|Ga0079219_12029614	Not Available	548	Open in IMG/M
3300009672\|Ga0116215_1398738	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	596	Open in IMG/M
3300009700\|Ga0116217_10446805	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	816	Open in IMG/M
3300009700\|Ga0116217_10648880	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	655	Open in IMG/M
3300009792\|Ga0126374_10320721	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1048	Open in IMG/M
3300009839\|Ga0116223_10898702	Not Available	505	Open in IMG/M
3300010043\|Ga0126380_10354620	Not Available	1069	Open in IMG/M
3300010048\|Ga0126373_12507480	Not Available	575	Open in IMG/M
3300010371\|Ga0134125_12508633	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	560	Open in IMG/M
3300010373\|Ga0134128_13202165	All Organisms → cellular organisms → Bacteria	503	Open in IMG/M
3300010375\|Ga0105239_10488388	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1399	Open in IMG/M
3300012199\|Ga0137383_10802218	Not Available	687	Open in IMG/M
3300012201\|Ga0137365_10580013	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	822	Open in IMG/M
3300012208\|Ga0137376_10167997	Not Available	1892	Open in IMG/M
3300012917\|Ga0137395_10739097	Not Available	712	Open in IMG/M
3300012961\|Ga0164302_10135904	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1424	Open in IMG/M
3300012989\|Ga0164305_10385621	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1068	Open in IMG/M
3300016270\|Ga0182036_10690187	Not Available	825	Open in IMG/M
3300017928\|Ga0187806_1051969	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1248	Open in IMG/M
3300017930\|Ga0187825_10378109	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → Amycolatopsis pithecellobii	541	Open in IMG/M
3300017974\|Ga0187777_10600909	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	775	Open in IMG/M
3300017995\|Ga0187816_10554897	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes → Pseudorhodoplanes sinuspersici	517	Open in IMG/M
3300018007\|Ga0187805_10635864	Not Available	505	Open in IMG/M
3300018047\|Ga0187859_10826036	Not Available	533	Open in IMG/M
3300018062\|Ga0187784_10099882	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae	2361	Open in IMG/M
3300018090\|Ga0187770_11654391	Not Available	523	Open in IMG/M
3300020581\|Ga0210399_10909458	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	713	Open in IMG/M
3300021180\|Ga0210396_10423735	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1169	Open in IMG/M
3300021401\|Ga0210393_11183116	Not Available	616	Open in IMG/M
3300021406\|Ga0210386_11253473	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	625	Open in IMG/M
3300021407\|Ga0210383_10057643	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3240	Open in IMG/M
3300021407\|Ga0210383_10851608	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	778	Open in IMG/M
3300021474\|Ga0210390_10258086	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1476	Open in IMG/M
3300021478\|Ga0210402_10285041	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1528	Open in IMG/M
3300021478\|Ga0210402_11609903	Not Available	576	Open in IMG/M
3300021860\|Ga0213851_1573378	Not Available	553	Open in IMG/M
3300024219\|Ga0247665_1014279	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	937	Open in IMG/M
3300025905\|Ga0207685_10815432	Not Available	515	Open in IMG/M
3300025907\|Ga0207645_10674008	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	703	Open in IMG/M
3300025928\|Ga0207700_11662973	Not Available	564	Open in IMG/M
3300025929\|Ga0207664_10388559	Not Available	1240	Open in IMG/M
3300026557\|Ga0179587_11036034	Not Available	540	Open in IMG/M
3300027505\|Ga0209218_1110591	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	576	Open in IMG/M
3300027609\|Ga0209221_1007249	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2836	Open in IMG/M
3300027648\|Ga0209420_1005788	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	4933	Open in IMG/M
3300027725\|Ga0209178_1426697	Not Available	507	Open in IMG/M
3300027767\|Ga0209655_10260179	Not Available	564	Open in IMG/M
3300027775\|Ga0209177_10436930	Not Available	532	Open in IMG/M
3300027855\|Ga0209693_10268538	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	835	Open in IMG/M
3300027857\|Ga0209166_10085688	Not Available	1774	Open in IMG/M
3300027857\|Ga0209166_10112397	All Organisms → cellular organisms → Bacteria	1511	Open in IMG/M
3300027869\|Ga0209579_10298219	Not Available	869	Open in IMG/M
3300027882\|Ga0209590_10186235	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1306	Open in IMG/M
3300028146\|Ga0247682_1026472	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1025	Open in IMG/M
3300028380\|Ga0268265_12115913	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → Amycolatopsis pithecellobii	570	Open in IMG/M
3300028759\|Ga0302224_10422821	Not Available	542	Open in IMG/M
3300028768\|Ga0307280_10062132	Not Available	1187	Open in IMG/M
3300030007\|Ga0311338_10265078	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1921	Open in IMG/M
3300031572\|Ga0318515_10778809	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	505	Open in IMG/M
3300031681\|Ga0318572_10385325	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	833	Open in IMG/M
3300031708\|Ga0310686_106860314	Not Available	614	Open in IMG/M
3300031708\|Ga0310686_117009115	Not Available	693	Open in IMG/M
3300031769\|Ga0318526_10335268	Not Available	618	Open in IMG/M
3300031770\|Ga0318521_10828097	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	564	Open in IMG/M
3300031778\|Ga0318498_10289239	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	736	Open in IMG/M
3300031781\|Ga0318547_10189006	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1226	Open in IMG/M
3300031859\|Ga0318527_10083054	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1298	Open in IMG/M
3300031860\|Ga0318495_10478842	Not Available	544	Open in IMG/M
3300031897\|Ga0318520_10226690	Not Available	1109	Open in IMG/M
3300031910\|Ga0306923_12214568	All Organisms → cellular organisms → Bacteria	551	Open in IMG/M
3300032008\|Ga0318562_10095703	Not Available	1680	Open in IMG/M
3300032008\|Ga0318562_10664369	Not Available	600	Open in IMG/M
3300032042\|Ga0318545_10113332	Not Available	954	Open in IMG/M
3300032060\|Ga0318505_10493874	Not Available	578	Open in IMG/M
3300032076\|Ga0306924_11488653	Not Available	718	Open in IMG/M
3300032091\|Ga0318577_10587542	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	529	Open in IMG/M
3300032261\|Ga0306920_102027914	Not Available	805	Open in IMG/M
3300032261\|Ga0306920_102155878	Not Available	776	Open in IMG/M
3300032770\|Ga0335085_10484835	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1414	Open in IMG/M
3300032892\|Ga0335081_12182217	Not Available	584	Open in IMG/M
3300033134\|Ga0335073_11319080	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	712	Open in IMG/M
3300033289\|Ga0310914_11191884	Not Available	663	Open in IMG/M
3300033290\|Ga0318519_10069008	Not Available	1828	Open in IMG/M
3300033290\|Ga0318519_11080663	All Organisms → cellular organisms → Bacteria	500	Open in IMG/M
3300034163\|Ga0370515_0474784	Not Available	528	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	94.50%
Host-Associated	Host-Associated	5.50%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	85.32%
Aquatic	Environmental → Aquatic	9.17%
Plants	Host-Associated → Plants	5.50%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	83.49%
Freshwater	Environmental → Aquatic → Freshwater	8.26%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.75%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.75%
Peat	Environmental → Terrestrial → Peat	1.83%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	60.55%
Loam	Environmental → Terrestrial → Soil → Loam	16.51%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	7.34%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	6.42%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.75%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.83%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.83%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.92%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	32.11%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	22.94%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	9.17%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.34%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	6.42%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.59%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	3.67%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	3.67%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.75%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.83%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.92%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.92%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	25.69%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.42%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.50%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	5.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.59%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	4.59%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	4.59%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.59%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	3.67%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.67%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.75%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.75%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.75%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.75%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.75%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.83%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	1.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.83%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	0.92%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.92%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.92%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.92%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001356	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007	Environmental	Open in IMG/M
3300003218	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006573	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009672	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300009839	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300017928	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1	Environmental	Open in IMG/M
3300017930	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_5	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021860	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2014 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300024219	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK06	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027505	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O3 (SPAdes)	Environmental	Open in IMG/M
3300027609	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027648	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O1 (SPAdes)	Environmental	Open in IMG/M
3300027725	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes)	Environmental	Open in IMG/M
3300027767	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027775	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027857	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028146	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK23	Environmental	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028759	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_1	Environmental	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300032008	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18	Environmental	Open in IMG/M
3300032042	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M
3300034163	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_04D_14	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12269J14319_103630382	3300001356	Peatlands Soil	RALLEQIAEPLRVAARADTVVSGPAGHPSGVAGITVGITP*
JGI26339J46600_101343042	3300003218	Bog Forest Soil	HDAQAQALLDQIAEPLRVAARADAVVRGPAEHASGVPGITVGIAV*
JGIcombinedJ51221_102860982	3300003505	Forest Soil	ALLDEIAEPLRLAARADAVLRGDAGHPSGVDGVTVAITV*
Ga0062388_1003398272	3300004635	Bog Forest Soil	EAARALLDQIAEPLRVAARADEVVRGPAEHPSGVDGITVGITV*
Ga0068868_1015705442	3300005338	Miscanthus Rhizosphere	AARSLLDQIAEPLRIAARADALILGPAGHPSGVDGITVGIAV*
Ga0070709_109987922	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	QADDAQARSLLDQIAEPLRVAARADALVRGPAEHPSGVAGISVEIVV*
Ga0070709_114876712	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	ARSLLDQIAEPLRIAARADALVLGPAECPSGVDGIAVGITV*
Ga0066687_105992022	3300005454	Soil	ARARSLLDQIAEPLRVAARADALVLGPASHPSGVDGITVGIAV*
Ga0070663_1000122801	3300005455	Corn Rhizosphere	AARSLLDQIAEPLRIAARADALILGHAGHPSGVDGITVGIAV*
Ga0070684_1005258032	3300005535	Corn Rhizosphere	AHDDAARSLLDQIAEPLRIAARADALVLAPAGHPSGVDGITVGIAV*
Ga0070762_105353982	3300005602	Soil	AQAGALLDQIAEPLRVAARADEVVRGPAGHPSGAAGITVRIVS*
Ga0070762_111867791	3300005602	Soil	TPAAETLLDQIAEPLRIAARARTLVRAPATDPTGASTHPSGVDGITIGITA*
Ga0070763_107150582	3300005610	Soil	DQIAVPLRVAARADEVVRGPADHPSGVDGITVGITV*
Ga0070716_1012525382	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	ARSLLDQIAEPLRIAARADALILGPAECPSGVDGITVGITV*
Ga0070765_1002968731	3300006176	Soil	LLDKIAEPLRVAARAETVVRGPAEHPSGVAGITVGITV*
Ga0070765_1022862752	3300006176	Soil	AAAAALLDEIAEPLRLAARADAVLRGDAGHPSGVDGVTVAVTV*
Ga0074055_118703761	3300006573	Soil	LLDQIAEPLRVAARADALVLGPAEQPSGVDGITVGIAV*
Ga0079222_105644882	3300006755	Agricultural Soil	LDQIAEPLRIAARADALVLGPADHPSGVDGITVGIAV*
Ga0079220_108495641	3300006806	Agricultural Soil	AGSLLDQIAEPLRVAARADAMVRGVADHPSGVDGITVGITV*
Ga0068865_1002078351	3300006881	Miscanthus Rhizosphere	DQIAEPLRIAARADALVLGPAGHPSGIDGITVGIAV*
Ga0073928_101646311	3300006893	Iron-Sulfur Acid Spring	AAEALLGQIAEPLRVAARADQVIRGPAAHPSGVDGITVGIGP*
Ga0079219_120296141	3300006954	Agricultural Soil	QARSLLDQIAEPLRIAARADALVLGPAEYPSGVDGITVGIAI*
Ga0116215_13987381	3300009672	Peatlands Soil	AEALLDQIAEPLRIAARADAVVRGPAQQPSGVAGITVGIAV*
Ga0116217_104468051	3300009700	Peatlands Soil	LLDQIAEPLRVAARADAVVHGPAEQPSGIDGITVGIAV*
Ga0116217_106488802	3300009700	Peatlands Soil	HDEAARALLEQIAEPLRVAARADTVVSGPAGHPSGVAGITVGITP*
Ga0126374_103207212	3300009792	Tropical Forest Soil	ADDARARSLLDQIAEPLRAAARADAIAHGVAGYPSGVPGISVEIVA*
Ga0116223_108987021	3300009839	Peatlands Soil	RALLEQIAEPLRVAARADAVISGPAEYPSGVAGITVGIVP*
Ga0126380_103546202	3300010043	Tropical Forest Soil	LIAEPLRLAARADAVARGEAGHPSGVDGITVAVTPR*
Ga0126373_125074801	3300010048	Tropical Forest Soil	LLDVIAEPLRLAARADLVVRGDAAHPSGVDDVTLAIVPARPAV*
Ga0134125_125086331	3300010371	Terrestrial Soil	QAHDDAARSLLDQIAEPLRIAARADALVLAPAGHPSGVDGITVGIAV*
Ga0134128_132021652	3300010373	Terrestrial Soil	LDQIAEPLRVAARADALVRGPAEHPSGVAGISVEIVV*
Ga0105239_104883881	3300010375	Corn Rhizosphere	DAARSLLDQIAEPLRIAARADALILGPAGHPSGVDGITVGIAV*
Ga0137383_108022182	3300012199	Vadose Zone Soil	DLLDLIAEPLRLAARADAVARGEAGHPSGVDGVTVAVTPR*
Ga0137365_105800131	3300012201	Vadose Zone Soil	RSLLGQIAEPLRVAARADTLVRGPAEHPSGVDGITVGIAV*
Ga0137376_101679971	3300012208	Vadose Zone Soil	HDARARSLLDQIAEPLRVAARADALVLGPASHPSGIEGITVGIAV*
Ga0137395_107390972	3300012917	Vadose Zone Soil	DQIAEPLRVAARADALVLGPADHPSGVDGITVGIAV*
Ga0164302_101359042	3300012961	Soil	HDAAARSLLDQIAEPLRIAARADALILGPAGHSSGVDGITVGIAV*
Ga0164305_103856212	3300012989	Soil	DDAARSLLDQIAEPLRIAARADALVLAPAGHPSGVDGITVGIAV*
Ga0182036_106901872	3300016270	Soil	ARSLLDQIAEPLRVAARADALVLGPAEHPSGVDGITVGIAV
Ga0187806_10519692	3300017928	Freshwater Sediment	LLDQIAEPLRIAARAGAVVRGPAEHASGVAGITVGIAV
Ga0187825_103781091	3300017930	Freshwater Sediment	QIAEPLRVAARADAVVRGPAEHFSGVAGITVGIVP
Ga0187777_106009091	3300017974	Tropical Peatland	QIAEPLRVAARAGAVVRGPAEHPSGVDGITVGIAV
Ga0187816_105548972	3300017995	Freshwater Sediment	AARALLDQIAEPLRVAARADEVVRGPATHPSGVDGITVAITV
Ga0187805_106358642	3300018007	Freshwater Sediment	VDEIGKPLRLAARADAVLRGDAGHPSGVDGVTVAIEV
Ga0187859_108260361	3300018047	Peatland	AGALLDQIAEPLRIAARADTVVRGTTAHPSGVAGITVGIAV
Ga0187784_100998821	3300018062	Tropical Peatland	LARIAEPLRVAARADVVRLGPADHPSGVDGITVGVTV
Ga0187770_116543911	3300018090	Tropical Peatland	GALLDQVAEPLRIAARADEVIRGEAGHPGGVPGITVGVVP
Ga0210399_109094582	3300020581	Soil	QIAEPLRVAARAGAVVRGPAEHPSGVDGISVGIAV
Ga0210396_104237351	3300021180	Soil	ARAEALLGRIAEPLRIAARADAVIRGRAEHPSGVAGITVGITVGR
Ga0210393_111831161	3300021401	Soil	DQIAEPLRIAARADAVVRGPAEHFSGVDGITVGIVP
Ga0210386_112534732	3300021406	Soil	AAAAALLDEIAEPLRLAARADAVLRGDAGHPSGVDGVTVAVTV
Ga0210383_100576433	3300021407	Soil	AALLDEIAEPLRLAARADAVLRGDAGHPSGVDGVTVAVTV
Ga0210383_108516082	3300021407	Soil	ALLARIAEPLRIAARADAVIRGRAEHPSGVAGITVGITVGR
Ga0210390_102580861	3300021474	Soil	DEAAEALLDQIAEPLRIAARADAVVRGPAEHLSGVDGITVGIVP
Ga0210402_102850411	3300021478	Soil	QALLDQIAEPLRVAARAGAVVRGPAEHPSGVDGISVGIAV
Ga0210402_116099033	3300021478	Soil	DRIDEPLRIAARADTVVRGTAGHPSGVAGITVGIAV
Ga0213851_15733781	3300021860	Watersheds	QALLDQIAEPLRLAARADAVVRGPAAHPSGVEGITVGIVA
Ga0247665_10142792	3300024219	Soil	DQIAEPLRIAARADALILGPAGHPSGVDGITVGIAV
Ga0207685_108154322	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	QIAEPLRVAARADAVVRGTASHPSGVDGITVGITV
Ga0207645_106740081	3300025907	Miscanthus Rhizosphere	ARSLLDQIAEPLRVAARADAVVRGTAGHPSGVAGITVGIAV
Ga0207700_116629731	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	DAQAQALLDQIAEPLRVAARADAVVRGTAGHPSGVAGITVGITA
Ga0207664_102572442	3300025929	Agricultural Soil	TAAAAALLDEIAEPLRLAARADALLRGDAGHPSGVDGVTVAVAV
Ga0207664_103885591	3300025929	Agricultural Soil	LDQIAEPLRIAARADALVLGPAECPSGVDGIAVGITV
Ga0179587_110360341	3300026557	Vadose Zone Soil	RSLLDQIAEPLRVAARADALVLGPAEYPSGVDGITVGIAV
Ga0209218_11105911	3300027505	Forest Soil	AHDENAAALLDQIAEPLRIAARADTVVRGPAEHFSGVAGITVGIVP
Ga0209221_10072491	3300027609	Forest Soil	DPDAEQLLSIIAEPLRVAARADAVVFGEADHASGVDGITVAIAV
Ga0209420_10057887	3300027648	Forest Soil	LLDQIAEPLRVAARAEEVIRGPAEHPSGVAGITVGITP
Ga0209178_14266972	3300027725	Agricultural Soil	LDQIAEPLRVAARADAVVRGTAGHPSGVAGITVGIEV
Ga0209655_102601792	3300027767	Bog Forest Soil	LLDQIAEPLRVAARADEVVRGPAEHPSGVDGITVGITV
Ga0209177_104369302	3300027775	Agricultural Soil	QARSLLDQIAEPLRIAARADALVLGPAEYPSGVDGITVGIAI
Ga0209693_102685381	3300027855	Soil	QIAEPLRVAARAETVVRGPAEHPSGVAGITVGILPETT
Ga0209166_100856883	3300027857	Surface Soil	AAALLDQVAESLRVAARADAVLRGPAEYPSGVDGITVGIVA
Ga0209166_101123973	3300027857	Surface Soil	ADGPKAEALLAQIAEPLRIAARADAMVRGSAEHPSGVDGITVGISV
Ga0209579_102982191	3300027869	Surface Soil	QAEALLAQIAEPLRLAARADAVVRAPAAHPSGVDGITVGIVP
Ga0209590_101862351	3300027882	Vadose Zone Soil	QTSALLDQIAEPLRVAARADALVRGPAGHPSGVAGITVGIAV
Ga0247682_10264721	3300028146	Soil	LLDQIAEPLRIAARADALILGPAGHPSGVDGITVGIAV
Ga0268265_121159131	3300028380	Switchgrass Rhizosphere	DVAARSLLDQIAEPLRIAARADALILGPAGHPSGVDGITVGIAV
Ga0302224_104228212	3300028759	Palsa	TAAAETLLDQIAEPLRIAARAGTLVRAPATHPSGVDAITGGIVA
Ga0307280_100621321	3300028768	Soil	SLLDQIGEPLRVAARADALVLGPADHPSGVDGITVGIAV
Ga0311338_102650781	3300030007	Palsa	AAEALLDQIAEPLRIAVRADALVRGAAEHPSGVDGITVAIAPQVS
Ga0318515_107788092	3300031572	Soil	LDRIAEPLRVAARADELVRGPADHPSGVDGISVGILP
Ga0318572_103853251	3300031681	Soil	LDQIAEPLRVAARADALVLGPAEHPSGVRGITVGIAL
Ga0310686_1068603142	3300031708	Soil	QARDAQTEALLAQIAEPLRLAARADVVVRGPAAHPSGVEGITVGIVP
Ga0310686_1170091151	3300031708	Soil	DEAAEALLDQIAEPLRIAARADSVVRGPAEHPGGVAGITVGIVA
Ga0318526_103352682	3300031769	Soil	RSTASAQALLDQIAEPLRVAARADAVLRGPAEHPSGVDGITVGIVP
Ga0318521_108280971	3300031770	Soil	LLDQIAEPLRVAARADTVVRGPAEHPSGVDGITVSIVP
Ga0318498_102892392	3300031778	Soil	ALLDQIAEPLRVAARADEVVRGPATYPSGVAGITVGITV
Ga0318547_101890062	3300031781	Soil	AHDEPADALLNQIAEPLRVAARADAVVRGAATYPSGVAGVTVAIAP
Ga0318527_100830541	3300031859	Soil	LLDQIAEPLRVAARAEAVVLAPAEHPSGVAGITVGIAV
Ga0318495_104788421	3300031860	Soil	LDLIAEPLRLAARADAVARGEAGHPSGVDGVTVSIVPARG
Ga0306919_103707102	3300031879	Soil	TPAADLLDLIAEPLRLAARADAVARGEAGHPSGVDGVTVAVTPR
Ga0318520_102266902	3300031897	Soil	LDRIAEPLRIAARAEAVVRAPAAHPSGVAGITVGIVA
Ga0306923_122145682	3300031910	Soil	QIAEPLRVAARADEVVRGPAGHPSGVAAITVGIVPSDG
Ga0318562_100957032	3300032008	Soil	DQIAEPLRVAARADALVLGPAEHPSGVDGITVGIAV
Ga0318562_106643691	3300032008	Soil	PAAADLLDVIAEPLRLAARADAIVRGAASHPSGVEGITVGIAV
Ga0318545_101133322	3300032042	Soil	DTPAARALLDQIAEPLRVAARAGAVVRGPADHPSGVDGIMVGIAV
Ga0318505_104938742	3300032060	Soil	SHDAAAQALLDQIAEPLRVAARADAVLRGPAEHPSGVDGITVGIVP
Ga0306924_114886533	3300032076	Soil	RDAQAGALLDQIGEPLRVAARADALVRGPAGHPSGVPGITVAIEA
Ga0306924_120197811	3300032076	Soil	TAAAAALLDEIAEPLRLAARADAVLRGDAGHPSGVDGVTVAITV
Ga0318577_105875421	3300032091	Soil	QIAEPLRVAARADALVLGPAEHPSGVRGITVGIAV
Ga0306920_1020279141	3300032261	Soil	LLDLIAEPLRLAARADAVARGEAGHPSGVDGVTVAVTPR
Ga0306920_1021558782	3300032261	Soil	HDAEARALLDRIAEPLRIAARAEAVVRAPAAHPSGVAGITVGIVA
Ga0335085_104848351	3300032770	Soil	ARSLLDQIAEPLRVAARADALVLGPAEHPSGVGGITVGITV
Ga0335081_121822172	3300032892	Soil	AHDAQAAALLDQIAEPLRIAARADAVVLAPAEHPSGVAGITVAIEA
Ga0335073_113190802	3300033134	Soil	ALLDQIAAPLRIAARADTLVRGPAGYPAGVPDITVAIAP
Ga0310914_111918842	3300033289	Soil	QIAEPLRVAARADEVVRGPAEHLSGVAGITVGINP
Ga0318519_100690082	3300033290	Soil	RTPEAADLLDVIAEPLRLAARADAIVRGAASHPSGVEGITVGIAV
Ga0318519_110806631	3300033290	Soil	VQAHDDAARALLDQIAGPLRIAARADEVIRGSADQPSGVDGISVGIVP
Ga0370515_0474784_3_113	3300034163	Untreated Peat Soil	DQIAEPLRIAARARTLVRAPAIHPSGVDGITIGITV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F089581

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences