Metagenome / Metatranscriptome Family F089584

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F089584
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	61 residues
Representative Sequence	MAMFDETYRVIAVESQSLTIQGNISGEVLTIVNPDPDIPLTQEDYPVGQLIALTDPSASGVN
Number of Associated Samples	72
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	72.90 %
% of genes near scaffold ends (potentially truncated)	22.94 %
% of genes from short scaffolds (< 2000 bps)	75.23 %
Associated GOLD sequencing projects	66
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.59

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (52.294 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (16.514 % of family members)
Environment Ontology (ENVO)	Unclassified (40.367 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (55.963 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 3.33% β-sheet: 23.33% Coil/Unstructured: 73.33%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.59
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.59
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF14014	DUF4230	12.84
PF00072	Response_reg	10.09
PF13302	Acetyltransf_3	5.50
PF00903	Glyoxalase	2.75
PF01381	HTH_3	1.83
PF07043	DUF1328	1.83
PF03544	TonB_C	1.83
PF02511	Thy1	0.92
PF03743	TrbI	0.92
PF00962	A_deaminase	0.92
PF02410	RsfS	0.92
PF13620	CarboxypepD_reg	0.92
PF04773	FecR	0.92
PF04264	YceI	0.92
PF09723	Zn-ribbon_8	0.92
PF00437	T2SSE	0.92
PF02687	FtsX	0.92
PF01855	POR_N	0.92
PF08245	Mur_ligase_M	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG0810	Periplasmic protein TonB, links inner and outer membranes	Cell wall/membrane/envelope biogenesis [M]	1.83
COG5487	Uncharacterized membrane protein YtjA, UPF0391 family	Function unknown [S]	1.83
COG0674	Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, alpha subunit	Energy production and conversion [C]	0.92
COG0799	Ribosomal silencing factor RsfS, regulates association of 30S and 50S subunits	Translation, ribosomal structure and biogenesis [J]	0.92
COG1351	Thymidylate synthase ThyX, FAD-dependent family	Nucleotide transport and metabolism [F]	0.92
COG1816	Adenosine/6-amino-6-deoxyfutalosine deaminase	Nucleotide transport and metabolism [F]	0.92
COG2353	Polyisoprenoid-binding periplasmic protein YceI	General function prediction only [R]	0.92
COG2948	Type IV secretory pathway, VirB10 component	Intracellular trafficking, secretion, and vesicular transport [U]	0.92
COG4231	TPP-dependent indolepyruvate ferredoxin oxidoreductase, alpha subunit	Energy production and conversion [C]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.29 %
All Organisms	root	All Organisms	47.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.29 %
cellular organisms	root	All Organisms → cellular organisms	47.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.29 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	47.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.29 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	37.61 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	1.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.29 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	15.60 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	11.01 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	1.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.29 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	15.60 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	11.01 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.29 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	15.60 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	11.01 %
Chitinophagia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia	1.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.29 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	15.60 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	4.59 %
Chitinophagales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales	1.83 %
Acidobacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.29 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	15.60 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	3.67 %
Chitinophagaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae	1.83 %
Acidobacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.29 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	15.60 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	3.67 %
unclassified Chitinophagaceae	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae	1.83 %
Acidobacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.29 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	15.60 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	3.67 %
Chitinophagaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium	1.83 %
Acidobacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459022\|GZEQPF101CXXWF	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	517	Open in IMG/M
2228664022\|INPgaii200_c0819422	Not Available	800	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_104684209	Not Available	695	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_105864595	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	4607	Open in IMG/M
3300000789\|JGI1027J11758_12659093	Not Available	602	Open in IMG/M
3300001867\|JGI12627J18819_10000440	All Organisms → cellular organisms → Bacteria	13653	Open in IMG/M
3300003505\|JGIcombinedJ51221_10048934	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1601	Open in IMG/M
3300003505\|JGIcombinedJ51221_10063879	All Organisms → cellular organisms → Bacteria → Acidobacteria	1424	Open in IMG/M
3300004120\|Ga0058901_1129250	Not Available	504	Open in IMG/M
3300004631\|Ga0058899_11401142	Not Available	501	Open in IMG/M
3300004633\|Ga0066395_10774411	Not Available	574	Open in IMG/M
3300005332\|Ga0066388_100071862	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3773	Open in IMG/M
3300005332\|Ga0066388_102867220	All Organisms → cellular organisms → Bacteria → Acidobacteria	881	Open in IMG/M
3300005332\|Ga0066388_103238851	Not Available	832	Open in IMG/M
3300005332\|Ga0066388_104072771	Not Available	745	Open in IMG/M
3300005434\|Ga0070709_10129902	All Organisms → cellular organisms → Bacteria	1718	Open in IMG/M
3300005434\|Ga0070709_10338421	Not Available	1109	Open in IMG/M
3300005434\|Ga0070709_11063341	Not Available	646	Open in IMG/M
3300005434\|Ga0070709_11241587	Not Available	600	Open in IMG/M
3300005434\|Ga0070709_11686591	Not Available	517	Open in IMG/M
3300005435\|Ga0070714_102235198	Not Available	532	Open in IMG/M
3300005436\|Ga0070713_100087837	All Organisms → cellular organisms → Bacteria → Acidobacteria	2667	Open in IMG/M
3300005436\|Ga0070713_101693504	Not Available	614	Open in IMG/M
3300005437\|Ga0070710_10082314	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	1881	Open in IMG/M
3300005439\|Ga0070711_101948637	Not Available	516	Open in IMG/M
3300005529\|Ga0070741_10013237	All Organisms → cellular organisms → Bacteria	14638	Open in IMG/M
3300005533\|Ga0070734_10429496	Not Available	753	Open in IMG/M
3300005538\|Ga0070731_10081043	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2152	Open in IMG/M
3300005538\|Ga0070731_10492856	Not Available	816	Open in IMG/M
3300005542\|Ga0070732_10076703	All Organisms → cellular organisms → Bacteria → Acidobacteria	1954	Open in IMG/M
3300005542\|Ga0070732_10131530	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1485	Open in IMG/M
3300005559\|Ga0066700_10153939	All Organisms → cellular organisms → Bacteria → Acidobacteria	1560	Open in IMG/M
3300005764\|Ga0066903_100473975	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2106	Open in IMG/M
3300005921\|Ga0070766_10777547	Not Available	651	Open in IMG/M
3300006041\|Ga0075023_100102195	Not Available	993	Open in IMG/M
3300006050\|Ga0075028_100649686	Not Available	631	Open in IMG/M
3300010043\|Ga0126380_10052980	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium	2204	Open in IMG/M
3300010043\|Ga0126380_11025558	Not Available	697	Open in IMG/M
3300010048\|Ga0126373_10016249	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	6181	Open in IMG/M
3300010048\|Ga0126373_10059119	All Organisms → cellular organisms → Bacteria	3431	Open in IMG/M
3300010048\|Ga0126373_10114361	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2515	Open in IMG/M
3300010048\|Ga0126373_10453442	Not Available	1317	Open in IMG/M
3300010048\|Ga0126373_11793175	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	677	Open in IMG/M
3300010048\|Ga0126373_12784325	Not Available	546	Open in IMG/M
3300010048\|Ga0126373_13084482	Not Available	519	Open in IMG/M
3300012207\|Ga0137381_11565815	Not Available	550	Open in IMG/M
3300012209\|Ga0137379_11483951	Not Available	579	Open in IMG/M
3300012989\|Ga0164305_11758060	Not Available	558	Open in IMG/M
3300014153\|Ga0181527_1295986	Not Available	639	Open in IMG/M
3300015371\|Ga0132258_12305226	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium	1350	Open in IMG/M
3300017927\|Ga0187824_10004400	All Organisms → cellular organisms → Bacteria	3880	Open in IMG/M
3300017927\|Ga0187824_10078052	Not Available	1047	Open in IMG/M
3300017927\|Ga0187824_10137062	Not Available	805	Open in IMG/M
3300017927\|Ga0187824_10139610	Not Available	798	Open in IMG/M
3300017929\|Ga0187849_1155241	Not Available	920	Open in IMG/M
3300017930\|Ga0187825_10029517	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1846	Open in IMG/M
3300017930\|Ga0187825_10046954	All Organisms → cellular organisms → Bacteria → Acidobacteria	1462	Open in IMG/M
3300018433\|Ga0066667_11364026	Not Available	621	Open in IMG/M
3300018468\|Ga0066662_10036002	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3005	Open in IMG/M
3300019877\|Ga0193722_1071471	Not Available	860	Open in IMG/M
3300020579\|Ga0210407_11482219	Not Available	501	Open in IMG/M
3300020581\|Ga0210399_10001951	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	16024	Open in IMG/M
3300020581\|Ga0210399_10005722	All Organisms → cellular organisms → Bacteria	9657	Open in IMG/M
3300020581\|Ga0210399_11047670	Not Available	655	Open in IMG/M
3300020582\|Ga0210395_10029033	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4054	Open in IMG/M
3300020582\|Ga0210395_11228539	Not Available	550	Open in IMG/M
3300020583\|Ga0210401_10047554	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4057	Open in IMG/M
3300020583\|Ga0210401_10110507	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2580	Open in IMG/M
3300021403\|Ga0210397_10001344	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	15714	Open in IMG/M
3300021441\|Ga0213871_10167395	Not Available	675	Open in IMG/M
3300021474\|Ga0210390_10481744	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1046	Open in IMG/M
3300021478\|Ga0210402_10199155	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1840	Open in IMG/M
3300021560\|Ga0126371_10001991	All Organisms → cellular organisms → Bacteria	17486	Open in IMG/M
3300021560\|Ga0126371_10994550	Not Available	981	Open in IMG/M
3300021560\|Ga0126371_11515382	Not Available	799	Open in IMG/M
3300022529\|Ga0242668_1054990	Not Available	719	Open in IMG/M
3300022724\|Ga0242665_10074745	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	957	Open in IMG/M
3300022726\|Ga0242654_10452768	Not Available	501	Open in IMG/M
3300025906\|Ga0207699_10443128	Not Available	930	Open in IMG/M
3300025929\|Ga0207664_10428795	All Organisms → cellular organisms → Bacteria → Acidobacteria	1178	Open in IMG/M
3300027047\|Ga0208730_1021007	Not Available	739	Open in IMG/M
3300027071\|Ga0209214_1007562	All Organisms → cellular organisms → Bacteria → Acidobacteria	1259	Open in IMG/M
3300027071\|Ga0209214_1035684	Not Available	661	Open in IMG/M
3300027562\|Ga0209735_1082677	Not Available	697	Open in IMG/M
3300027576\|Ga0209003_1091607	Not Available	570	Open in IMG/M
3300027706\|Ga0209581_1000021	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	643573	Open in IMG/M
3300027869\|Ga0209579_10123280	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1377	Open in IMG/M
3300027910\|Ga0209583_10123757	Not Available	1026	Open in IMG/M
3300031231\|Ga0170824_121200658	Not Available	709	Open in IMG/M
3300031234\|Ga0302325_10690694	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1473	Open in IMG/M
3300031544\|Ga0318534_10090462	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium	1746	Open in IMG/M
3300031572\|Ga0318515_10478800	Not Available	665	Open in IMG/M
3300031680\|Ga0318574_10502798	All Organisms → cellular organisms → Bacteria → Acidobacteria	710	Open in IMG/M
3300031715\|Ga0307476_10700111	Not Available	750	Open in IMG/M
3300031718\|Ga0307474_10010709	All Organisms → cellular organisms → Bacteria	6640	Open in IMG/M
3300031718\|Ga0307474_10176275	All Organisms → cellular organisms → Bacteria → Acidobacteria	1621	Open in IMG/M
3300031718\|Ga0307474_11404533	Not Available	550	Open in IMG/M
3300031720\|Ga0307469_10000090	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	35463	Open in IMG/M
3300031720\|Ga0307469_10294444	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1333	Open in IMG/M
3300031753\|Ga0307477_11166227	Not Available	501	Open in IMG/M
3300031754\|Ga0307475_10153042	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1832	Open in IMG/M
3300031754\|Ga0307475_10161675	All Organisms → cellular organisms → Bacteria → Acidobacteria	1782	Open in IMG/M
3300031754\|Ga0307475_11187984	Not Available	594	Open in IMG/M
3300031962\|Ga0307479_10153006	All Organisms → cellular organisms → Bacteria → Acidobacteria	2263	Open in IMG/M
3300031962\|Ga0307479_11480714	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	636	Open in IMG/M
3300031962\|Ga0307479_11689843	Not Available	587	Open in IMG/M
3300032805\|Ga0335078_10209170	All Organisms → cellular organisms → Bacteria	2700	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.17%
Host-Associated	Host-Associated	1.83%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	87.16%
Aquatic	Environmental → Aquatic	11.01%
Plants	Host-Associated → Plants	1.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	86.24%
Freshwater	Environmental → Aquatic → Freshwater	8.26%
Sediment	Environmental → Aquatic → Sediment	2.75%
Peat	Environmental → Terrestrial → Peat	0.92%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.92%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	58.72%
Loam	Environmental → Terrestrial → Soil → Loam	26.61%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	8.26%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.75%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.92%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	29.36%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	22.94%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	15.60%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	11.01%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.42%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	5.50%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	2.75%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.75%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.92%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	16.51%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	11.93%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	11.01%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	9.17%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	9.17%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	7.34%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	5.50%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	5.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.59%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.75%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	1.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.83%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.83%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.83%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.92%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	0.92%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.92%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	0.92%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.92%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459022	Grass soil microbial communities from Rothamsted Park, UK - FA2 (control condition)	Environmental	Open in IMG/M
2228664022	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004120	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF238 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004631	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF234 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005533	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006041	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300014153	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_60_metaG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300017927	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_4	Environmental	Open in IMG/M
3300017929	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_100	Environmental	Open in IMG/M
3300017930	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_5	Environmental	Open in IMG/M
3300018005	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_150	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300019877	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m1	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021441	Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1	Host-Associated	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022529	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022724	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300027047	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF042 (SPAdes)	Environmental	Open in IMG/M
3300027071	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027562	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027576	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027706	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen15_06102014_R2 (SPAdes)	Environmental	Open in IMG/M
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027910	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FA2_06884670	2170459022	Grass Soil	IFDETYRVIAVESQALTIQGNVSGEVLTITNPEPEIPFTAEEYPVGQLIGLTDPSESAPN
INPgaii200_08194221	2228664022	Soil	MAIFDETYRVIAVESQALTIQGNVSGEVLTIMNPEPDVPFTAEEYPVGQLIGLTDPSSSAPN
INPhiseqgaiiFebDRAFT_1046842092	3300000364	Soil	MAIFDETYRVIAVESQALTIQGNVSGEVLTIVNPEPEIPFTAEEYPVGQLIGLTDPSETAPN*
INPhiseqgaiiFebDRAFT_1058645954	3300000364	Soil	MAIFDETYRVIAVESQALTIQGNVSGEVLTIMNPEPDVPFTAEEYPVGQLIGLTDPSSSAPN*
JGI1027J11758_126590932	3300000789	Soil	AIFDETYRVIAVESQALTIQGNVSGEVLTIMNPEPDVPFTAEEYPVGQLIGLTDPSSSAPN*
JGI12627J18819_100004409	3300001867	Forest Soil	MALFDETYRIIAVESQSLTVRGTVSGEVIRIVNTNPEIPLSEKEYPVGQLIALSDPTSSPVN*
JGIcombinedJ51221_100489342	3300003505	Forest Soil	MTMFDETYRVIAVEEQSLTIRGNISGEVLTIMTADPEVSLTQEDYRVGQLIALSDPNASGVN*
JGIcombinedJ51221_100638791	3300003505	Forest Soil	MFDETYRVIAVEEQSLTIQGNISGEVLTIVTAYPEIPLTEEDYRVGQLIALSDPNASGVN
Ga0058901_11292502	3300004120	Forest Soil	PMAVFDETYRVIAVESQSLTVRGTISGEVITIVNTNPEVPLSEKEYPLGQLIALSDPSASAVN*
Ga0058899_114011421	3300004631	Forest Soil	FDETYRVIAVESQSLTVRGTISGEVITIVNTNPEVPLSEKEYPLGQLIALSDPSASAVN*
Ga0066395_107744111	3300004633	Tropical Forest Soil	MAIFDETYRVIAVESQALTIQGNVSGEVLTIVNPEPEVPFTAEEYPVGQLIGLTDPTESAPN*
Ga0066388_1000718623	3300005332	Tropical Forest Soil	MAIFDETYRVIAVESQALTIQGNVSGEVLTIVNPEPEIPFTAEEYPVGQLIGLTDPTESAPN*
Ga0066388_1028672202	3300005332	Tropical Forest Soil	MAIFDETYRVIAVESQALTIQGNVSGEVLTIVNPEPEVPFTAEEYPVGQLIGLSDPTESAPN*
Ga0066388_1032388512	3300005332	Tropical Forest Soil	MTLFDETYRVIAVDSQSLTVRGTTSGEVITIVNTTPELPLSEAEYPLGQLIALSDPSASIRTTN*
Ga0066388_1040727712	3300005332	Tropical Forest Soil	MAMFDETYRVIAVESQSLTIRGNVSGEIYTIVNPDPDTPLTQEDYPVGQLIALSDPSASGVN*
Ga0070709_101299021	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MAMFDETYRVIAVESQSLTIQGNVSGEVFTIVNPDPDTPLTQADYPVGQLIALSDPSASGVN*
Ga0070709_103384211	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MAIFDETYRVIAVESQALTIQGNVSGEVLTITNPEPEIPFTAEEYPVGQLIGLTDPSE
Ga0070709_110633411	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MAIFDETYRVIAVESQSLTVQGNVSGEVLTIMNSDPEIPIPVEEYPVGQLIALSDPTRQGEN*
Ga0070709_112415871	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MTVFDETYRVIAVEEQSLTIRGNISGEVLTIMTADPEVSLTQEDYRVGQLIALSDPNASGVN*
Ga0070709_116865912	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MAMFDETYRVIAVESQSLTIQGNLSGEVLTIVNPDPDIPLTQEDYPVGQLIALTDPTASGVN*
Ga0070714_1022351982	3300005435	Agricultural Soil	AMAMFDETYRVIAVESQSLTIQGNVSGEVFTIVNPDPDTPLTQADYPVGQLIALSDPSASGVN*
Ga0070713_1000878371	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MFDETYRVIAVESQSLTIQGNVSGEVFTIVNPDPDTPLTQEDYPVGQLIALSDPSASGVN
Ga0070713_1016935041	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MTVFDETYRVIAVEEQSLTIRGNISGEVLTIMTADPEVSLTQEEYRVGQLIALSDPSASGVN*
Ga0070710_100823142	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MAIFDETYRVIAVESQALTIQGNVSGEVLTITNPEPEIPFTAEEYPVGQLIGLTDPSESAPN*
Ga0070711_1019486372	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MFDETYRVIAVEEQSLTIRGNISGEVLTIMTADTEVSLTQADYRVGQLIALSDPNASGVN
Ga0070741_100132375	3300005529	Surface Soil	MAIFDETYRVIAVESQSLVVRGNTSGEILTIVNNDPEVPIREEDYPVGQLIALSDPSQQWAN*
Ga0070734_104294962	3300005533	Surface Soil	MALFDETYRVIAVESQSLTVRGTVSGEVITIVNTNPEVPLSEKEYPLGQLIALSDPSTSAAN*
Ga0070731_100810434	3300005538	Surface Soil	MALFDETYRVIAVESQSLTVRGTISGEVITIVNTNPDVPLSEKEYPLGQLIALSDPSASAVN*
Ga0070731_104928562	3300005538	Surface Soil	MTLFDETYRVIAVDSQSLTVRGTTSGEVITIVNTNPEVPLSEAEYPLGQLIALSDPSASTAN*
Ga0070732_100767031	3300005542	Surface Soil	MAIFDETYRVIAVESQSLTIQGNVSGEVLTILNPDPELPLREEDYPVGQLIALSDPSVQGEN*
Ga0070732_101315302	3300005542	Surface Soil	MTMFDETYRVIAVEAQSLTIRGNISGEVLTIMTADPEVSLTQEDYRVGQLIALSDPNASGVN*
Ga0066700_101539393	3300005559	Soil	MTMFDETYRVIAVEQQSLTIRGNISGEVLTIMTADPEVSLTQEDYRVGQLIALSDPNASGVN*
Ga0066903_1004739751	3300005764	Tropical Forest Soil	MALFDETYRVIAVDSQSLTVRGTMSGEIVTIVNTTPELPLSEAEYPLGQLIALSDPSASTRTSN*
Ga0070766_107775471	3300005921	Soil	MAVFDETYRVIAVESQSLTVRGTISGEVITIVNTNPEVPLSEKEYPLGQLIALSDPSASAVN*
Ga0075023_1001021952	3300006041	Watersheds	MAIFNETYRVIAVESQSLTIRGSVSGEVLKIVNPEPEIPFTPEEYPVGQLIGLTDPSASAPN*
Ga0075028_1006496861	3300006050	Watersheds	MAIFNETYRVIAVESQSLTIRGSVSGEVLKIVNPEPEIPFTPEEYPVGQLIGLSDPSASAPN*
Ga0126380_100529803	3300010043	Tropical Forest Soil	MAIFDETYRVIAVESQALTIQGNVSGEVFTIVNPEPEVPFTAEEYPVGQLIGLSDPTESAPN*
Ga0126380_110255582	3300010043	Tropical Forest Soil	MTLFDETYRVIAVDSQSLTVRGTTSGEVITIVNTTPELPLSEAEYPLGQLIALSDPSASLRTTN*
Ga0126373_100162493	3300010048	Tropical Forest Soil	MALFDETFRIIAVESQSLTVRGTVSGEVLTIVNTNPEIPLSEKEYPLGQLIALSDPSASTVN*
Ga0126373_100591193	3300010048	Tropical Forest Soil	MFDETYRVIAVEEQSLTVRGNISGEVLTIMTADPEVSLTQEDYRVGQLIALSDPNASGVN
Ga0126373_101143613	3300010048	Tropical Forest Soil	MALFDETYRILAVESQSLTVRGTVSGEVIRIVNTNPEIPLSEKEYPVGQLIALSDPTSSPVN*
Ga0126373_104534422	3300010048	Tropical Forest Soil	MALFDETYRVIAVDNQSLTVRGTTSGEVYTIVNTNPDVPLSEREYPPGQLIALTDPSTFSKSN*
Ga0126373_117931751	3300010048	Tropical Forest Soil	MAIFDETYRVIAVESQSLVVRGNVTGEILTIVNDDPAMPIREEDYPVGQLIALSDPSRRWEN*
Ga0126373_127843251	3300010048	Tropical Forest Soil	MALFDETYRVIAVDSQSLTVRGTISGEVVTIVNTNPEFPLTQEEYPLGQLIALSDPSTSSSSN*
Ga0126373_130844821	3300010048	Tropical Forest Soil	SRKGETMALFDETYRVIAVDNQSLTVRGTTSGEVYTIVNTNPDVPLSEKEYPLGQLIALTDPSTLSKSN*
Ga0137381_115658152	3300012207	Vadose Zone Soil	MAIFDETYRVIAVESQALTIQGSVSGEVLTIVNPEPEIPFTAEEYPVGQLIGLTDPSESSAPN*
Ga0137379_114839511	3300012209	Vadose Zone Soil	MAIFDETYRVIAVESQALTIQGSVSGEVLTIVNPEPEIPFTAEEYPVGQLIGLTDPSES
Ga0164305_117580601	3300012989	Soil	MAIFDETYRVIAVESQALTIQGNVSGEVLTIVNPEPETPFTAEEYPVGQLIGLT
Ga0181527_12959861	3300014153	Bog	MAIFDETYRIIAVESKSVTIQGSVSGEVLTIVKTPFENPLTQEELSVGQLIALTDPSASVVN*
Ga0132258_123052261	3300015371	Arabidopsis Rhizosphere	MAIFDETYRVIAVESQALTIQGNVSGEVLTITNPEPEVPFTAEEYPVGQLIGLTDPSESAPN*
Ga0187824_100044002	3300017927	Freshwater Sediment	MAIFDETYRVIAVESQSLTVQGNVTGEVLTIMNSDPEIPIPVEDYPVGQLIALSDPTKQGDN
Ga0187824_100780521	3300017927	Freshwater Sediment	MAIFDETYRVIAVESQSLVVRGNVSGEILRIVNDDPEMPIREEDYPVGQLIALSDPSEQWEN
Ga0187824_101370621	3300017927	Freshwater Sediment	MAIFDETYRVIAVESQSLVVQGNLTGEVLTIVNSDPEIPIPVEEYPVGQLIALSDPTKQGEN
Ga0187824_101396101	3300017927	Freshwater Sediment	MAIFDETYRVIAVESQALTIQGNVTGEVLTIVNPEPEIPFTAEEYPVGQLIGLTDPSETAIN
Ga0187849_11552411	3300017929	Peatland	MAIFDETYRIIAVESKSVTIQGSVSGEVLTIVKTPFENPLTQEELSVGQLIALTDPSASVVN
Ga0187825_100295172	3300017930	Freshwater Sediment	MAIFDETYRVIAVESQSLVVQGNLSGEVLTIVNSDPEIPIPVEEYPVGQLIALSDPTKQGEN
Ga0187825_100469542	3300017930	Freshwater Sediment	MAMFDETYRVIAVESQSLTIQGNVSGEVFTIVNPDPDTPLTQEDYPVGQLIALSDPSASGVN
Ga0187878_13156441	3300018005	Peatland	MAIFDETYRIIAVESKSVTIQGSVSGEVLTIVKTPFENPLTQEELSVGQLIAL
Ga0066667_113640261	3300018433	Grasslands Soil	MAMFDETYRVIAVESQSLTIQGNISGEVLTIVNPDPDIPLTQEDYPVGQLIALTDPSASGVN
Ga0066662_100360023	3300018468	Grasslands Soil	MTMFDETYRVIAVEEQSLTIRGNISGEVLTIMTADPEVSLTQEDYRVGQLIALSDPNASGVN
Ga0193722_10714712	3300019877	Soil	MAIFDETYRVIAVDSQSLTIQGSISGEVLTIVNPEPEVPFTQEQYPVGQLIGLSDPSRSTPN
Ga0210407_114822192	3300020579	Soil	MALFDETYRVIAVDSQCLTVRGTTSGEVMTIVNTNPELPLSEAEYPLGQLIALTDPSASTSN
Ga0210399_1000195118	3300020581	Soil	MSMFDETYRVIAVEEQSLTIRGNISGEVLTIMTADPEVSLTQEDYRVGQLIALSDPNASGVN
Ga0210399_100057223	3300020581	Soil	MALFDETYRVVAVDSQSLTVRGTTSGEILTIVNTNPEIPLNEAEYPLGQLIALSDPSATTSN
Ga0210399_110476701	3300020581	Soil	MTMFDETYRVIAVEEQSLTIQGNISGEVLTIVTAYPEIPLTEEDYRVGQLIALSDPNA
Ga0210395_100290335	3300020582	Soil	MAVFDETYRVIAVESQSLTVRGTISGEVITIVNTNPEVPLSEKEYPLGQLIALSDPSASAVN
Ga0210395_112285391	3300020582	Soil	MAIFDETYRVIAVESQSLTIQGNVSGEVLTILNPDPELPLREEDYPVGQLIALSDPSVQGEN
Ga0210401_100475546	3300020583	Soil	MTMFDETYRVIAVEEQSLTIQGNISGEVLTIVTAYPEIPLTEEDYRVGQLIALSDPNASGVN
Ga0210401_101105073	3300020583	Soil	MTLFDETYRVIAVDSQSLTVRGTTSGEVITIVNTNPEVPLSEAEYPLGQLIALSDPSASTAN
Ga0210397_1000134417	3300021403	Soil	ETYRVIAVEEQSLTIRGNISGEVLTIMTADPEVSLTQEDYRVGQLIALSDPNASGVN
Ga0210389_102923471	3300021404	Soil	VAVDSQSLTVRGTTSGEILTIVNTNPEIPLNEAEYPLGQLIALSDPSATTSN
Ga0213871_101673952	3300021441	Rhizosphere	MALFDETYRVIAVESQSLTVRGTISGEIVTIVNTTPEIPLSEEEYPLGQLIALTDPSTSSFPN
Ga0210390_104817441	3300021474	Soil	EVRMALFDETYRVVAVDSQSLTVRGTTSGEILTIVNTNPEIPLNEAEYPLGQLIALSDPSATTSN
Ga0210402_101991553	3300021478	Soil	MAIFDETYRVIAVESQALTIQGNVSGEVLTITNPEPEIPFTAEEYPVGQLIGLTDPSESAAN
Ga0126371_100019918	3300021560	Tropical Forest Soil	MALFDETYRVIAVDSQSLTVRGTMSGEIVTIVNTTPELPLSEAEYPLGQLIALSDPSASTRTSN
Ga0126371_109945502	3300021560	Tropical Forest Soil	MTMFDETYRVIAVEEQSLTIQGNISGEVLTIVTADPDIPLSEEDYRVGQLIALSDPNASGVN
Ga0126371_115153822	3300021560	Tropical Forest Soil	MTLFDETYRVIAVDSQSLTVRGTTSGEVITIVNTTPELPLSEAEYPLGQLIALSDPSASIRTTN
Ga0242668_10549902	3300022529	Soil	VIAVEEQSLTIRGNISGEVLTIMTADPEVSLTQEDYRVGQLIALSDPNASGVN
Ga0242665_100747451	3300022724	Soil	PMAVFDETYRVIAVESQSLTVRGTISGEVITIVNTNPEVPLSEKEYPLGQLIALSDPSASAVN
Ga0242654_104527682	3300022726	Soil	MFDETYRVIAVEEQSLTIRGNISGEVLTIMTADPEVSLTQEDYRVGQLIALSDPNASGVN
Ga0207699_104431281	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MTVFDETYRVIAVEEQSLTIRGNISGEVLTIMTADPEVSLTQEEYRVGQLIALSDPSASGVN
Ga0207664_104287951	3300025929	Agricultural Soil	MTMFDETYRVIAVEEQSLTIRGNISGEVLTIMTADPEVSLTQDEYRVGQLIALSDPSASGVN
Ga0208730_10210071	3300027047	Forest Soil	IAVEEQSLTIRGNISGEVLTIMTADPEVSLTQEDYRVGQLIALSDPNASGVN
Ga0209214_10075621	3300027071	Forest Soil	VFDETYRVIAVEEQSLTIRGNISGEVLTIMTADPEVSLTQEDYRVGQLIALSDPNASGVN
Ga0209214_10356843	3300027071	Forest Soil	IAVESQSLTVRGTVSGEVIRIVNTNPEIPLSEKEYPVGQLIALSDPTSSPVN
Ga0209735_10826772	3300027562	Forest Soil	MAIFDETYRVIAVDSQSLTIQGSISGEVLTIVNPEPEVPFTPEQYPVGQLIGLSDPSRSTPN
Ga0209003_10916071	3300027576	Forest Soil	MALFDETYRVIAVDSQNLTVRGTISGEIVTIVNTNPEFPLTEEEYPLGQLIALTDPSFSSFSN
Ga0209581_1000021582	3300027706	Surface Soil	MAIFDETYRVIAVESQSLVVRGNTSGEILTIVNNDPEVPIREEDYPVGQLIALSDPSQQWAN
Ga0209579_101232801	3300027869	Surface Soil	GTHGASNSVRKGGPMALFDETYRVIAVESQSLTVRGTISGEVITIVNTNPDVPLSEKEYPLGQLIALSDPSASAVN
Ga0209583_101237572	3300027910	Watersheds	MAIFNETYRVIAVESQSLTIRGSVSGEVLKIVNPEPEIPFTPEEYPVGQLIGLTDPSASAPN
Ga0170824_1212006582	3300031231	Forest Soil	MALFDETYRVIAVDSQSLTVRGTTSGEVVTIVNTTPELPLTEAEYPLGQLIALTDPSASTSN
Ga0302325_106906942	3300031234	Palsa	MENSATFHESYRVIAVDPQSLILQGTLTGEVVTIKNADPATPLTQEDYPVGKLIALTVPATGAAN
Ga0318534_100904622	3300031544	Soil	MAIFDETYRVIAVESQSLVVRGNVTGEILTIVNDDLAMPIREEDYPVGQLIALSDPSQRWEN
Ga0318515_104788002	3300031572	Soil	MAIFDETYRVIAVESQSLVVRGNVTGEILTIVNDDLAMPIREEDYPVGQLIALSDPSQR
Ga0318574_105027982	3300031680	Soil	SDEVVMAIFDETYRVIAVESQSLVVRGNVTGEILTIVNDDLAMPIREEDYPVGQLIALSDPSQRWEN
Ga0307476_107001112	3300031715	Hardwood Forest Soil	MALFDETYRVIAVESQSLTVRGTISGEVITIVNTNPDVPLSEKEYPLGQLIALSDPSASAVN
Ga0307474_100107096	3300031718	Hardwood Forest Soil	MTMFDETYRVIAVEAQSLTIRGNISGEVLTIMTADPEVSLTQEDYRVGQLIALSDPNASGVN
Ga0307474_101762753	3300031718	Hardwood Forest Soil	MTMFDETYRVIAVEEQSLTIQGNTSGEVLTIVTAYPEIPLTEEDYRVGQLIALSDPNASGVN
Ga0307474_114045331	3300031718	Hardwood Forest Soil	MALFDETYRVIAVESQSLTVRGTISGEVITIVNTNPDVPLSEKEYPLGQLIALSDPSASAIN
Ga0307469_1000009034	3300031720	Hardwood Forest Soil	MAIFDETYRVIAVESQSLTIQGNRSGEVLTITNPEPDIPFTAEEYPVGQLIGLTDPSETAPN
Ga0307469_102944443	3300031720	Hardwood Forest Soil	MTLFDETYRVIAVDSQSLTVRGTTSGEVITIMNTNPEIPLSEAEYPLGQLIALSDPSASTAN
Ga0307477_111662271	3300031753	Hardwood Forest Soil	MTMFDETYRVIAVEEQSLTIQGNISGEVLTIVTAYPEIPLTEEDYRVGQLIALTDPNASGVN
Ga0307475_101530422	3300031754	Hardwood Forest Soil	MAMFDETYRVIAVESQSLTIRGNVTGEVLTIVTADPEISLTQENYRVGQLIALTDPYASAPN
Ga0307475_101616755	3300031754	Hardwood Forest Soil	FDETYRVIAVESQSLTIQGNVSGEVLTILNPDPELPLREEDYPVGQLIALSDPSVQGEN
Ga0307475_111879841	3300031754	Hardwood Forest Soil	MTMFDETYRVIAVEEQSLTIQGNISGEVLTIVTAYPEIPLTEEDYRVGQLIALTDPNA
Ga0307479_101530061	3300031962	Hardwood Forest Soil	MFDETYRVIAVESQSLTIRGNVTGEVLTIVTADPEISLTQENYRVGQLIALTDPYASAPN
Ga0307479_114807141	3300031962	Hardwood Forest Soil	MAIFDETYRVIAVESQSLVVRGNITGEILTIVNNDPAMPIREEDYPVGQLIALSDPSEQWTN
Ga0307479_116898432	3300031962	Hardwood Forest Soil	AVESQSLTIQGNVSGEVLTILNPDPELPLREEDYPVGQLIALSDPSVQGEN
Ga0335078_102091701	3300032805	Soil	MEIFDETYRIIAVESHRLTIRGNVSGEVLTIVNPVPEFPLAQEDFSVGQLIELTDPSASAPN

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F089584

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences