Metagenome / Metatranscriptome Family F089657

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F089657
Family Type	Metagenome / Metatranscriptome
Number of Sequences	108
Average Sequence Length	65 residues
Representative Sequence	MQTRLKIALAAAGFALATIPAFAAEMPTDGSKNFSPPSDAPSYFANETVPESARVDRAAAFDKED
Number of Associated Samples	84
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	91.30 %
% of genes near scaffold ends (potentially truncated)	82.41 %
% of genes from short scaffolds (< 2000 bps)	84.26 %
Associated GOLD sequencing projects	81
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.27

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (57.407 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (61.111 % of family members)
Environment Ontology (ENVO)	Unclassified (75.926 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (61.111 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 23.66% β-sheet: 0.00% Coil/Unstructured: 76.34%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.27
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.27
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF01042	Ribonuc_L-PSP	57.41
PF00106	adh_short	2.78
PF13560	HTH_31	1.85
PF00027	cNMP_binding	0.93
PF00043	GST_C	0.93
PF05494	MlaC	0.93
PF01464	SLT	0.93
PF01546	Peptidase_M20	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG0251	Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family	Defense mechanisms [V]	57.41
COG0435	Glutathionyl-hydroquinone reductase	Energy production and conversion [C]	0.93
COG0625	Glutathione S-transferase	Posttranslational modification, protein turnover, chaperones [O]	0.93
COG2854	Periplasmic subunit MlaC of the ABC-type intermembrane phospholipid transporter Mla	Cell wall/membrane/envelope biogenesis [M]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	57.41 %
Unclassified	root	N/A	42.59 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	57.41 %
Unclassified	root	N/A	42.59 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	57.41 %
Unclassified	root	N/A	42.59 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.59 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	28.70 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.59 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	22.22 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.59 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	11.11 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5.56 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.85 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	0.93 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.59 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	11.11 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	1.85 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.93 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.93 %
Hyphomicrobiales incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis	0.93 %
Rhodobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	0.93 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.59 %
unclassified Rhodospirillaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae	11.11 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	1.85 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.93 %
Paracoccus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Paracoccus	0.93 %
Enhydrobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Enhydrobacter	0.93 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.93 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.59 %
Rhodospirillaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	11.11 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1.85 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	0.93 %
Paracoccus sulfuroxidans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Paracoccus → Paracoccus sulfuroxidans	0.93 %
Enhydrobacter aerosaccus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Enhydrobacter → Enhydrobacter aerosaccus	0.93 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.93 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.59 %
Rhodospirillaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	11.11 %
unclassified Streptomyces	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces	1.85 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.93 %
Paracoccus sulfuroxidans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Paracoccus → Paracoccus sulfuroxidans	0.93 %
Enhydrobacter aerosaccus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Enhydrobacter → Enhydrobacter aerosaccus	0.93 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.93 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.59 %
Rhodospirillaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	11.11 %
Streptomyces sp. GbtcB6	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. GbtcB6	1.85 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.93 %
Paracoccus sulfuroxidans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Paracoccus → Paracoccus sulfuroxidans	0.93 %
Enhydrobacter aerosaccus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Enhydrobacter → Enhydrobacter aerosaccus	0.93 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.93 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005764\|Ga0066903_103667630	All Organisms → cellular organisms → Bacteria → Proteobacteria	826	Open in IMG/M
3300005764\|Ga0066903_106064307	All Organisms → cellular organisms → Bacteria	633	Open in IMG/M
3300010048\|Ga0126373_11036684	Not Available	886	Open in IMG/M
3300010343\|Ga0074044_10394102	All Organisms → cellular organisms → Bacteria	907	Open in IMG/M
3300010359\|Ga0126376_11223027	All Organisms → cellular organisms → Bacteria	767	Open in IMG/M
3300010360\|Ga0126372_13333198	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	500	Open in IMG/M
3300010366\|Ga0126379_12239353	Not Available	647	Open in IMG/M
3300010376\|Ga0126381_100369857	All Organisms → cellular organisms → Bacteria → Proteobacteria	1988	Open in IMG/M
3300010376\|Ga0126381_101097252	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1149	Open in IMG/M
3300010376\|Ga0126381_103635901	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	604	Open in IMG/M
3300016270\|Ga0182036_10333872	Not Available	1163	Open in IMG/M
3300016341\|Ga0182035_10771422	Not Available	842	Open in IMG/M
3300016341\|Ga0182035_12157352	All Organisms → cellular organisms → Bacteria	505	Open in IMG/M
3300016404\|Ga0182037_10802289	Not Available	812	Open in IMG/M
3300016404\|Ga0182037_11679941	Not Available	566	Open in IMG/M
3300017928\|Ga0187806_1116714	All Organisms → cellular organisms → Bacteria	863	Open in IMG/M
3300017932\|Ga0187814_10309562	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	606	Open in IMG/M
3300017995\|Ga0187816_10113845	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1164	Open in IMG/M
3300020580\|Ga0210403_10389635	All Organisms → cellular organisms → Bacteria → Proteobacteria	1138	Open in IMG/M
3300020581\|Ga0210399_10927618	All Organisms → cellular organisms → Bacteria	705	Open in IMG/M
3300021432\|Ga0210384_10729629	All Organisms → cellular organisms → Bacteria	886	Open in IMG/M
3300021560\|Ga0126371_12342891	Not Available	645	Open in IMG/M
3300022533\|Ga0242662_10311871	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	527	Open in IMG/M
3300027039\|Ga0207855_1033536	All Organisms → cellular organisms → Bacteria	694	Open in IMG/M
3300027701\|Ga0209447_10127318	All Organisms → cellular organisms → Bacteria	700	Open in IMG/M
3300030969\|Ga0075394_12069556	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	596	Open in IMG/M
3300031128\|Ga0170823_16233624	All Organisms → cellular organisms → Bacteria	743	Open in IMG/M
3300031543\|Ga0318516_10411171	All Organisms → cellular organisms → Bacteria	779	Open in IMG/M
3300031544\|Ga0318534_10384085	Not Available	807	Open in IMG/M
3300031545\|Ga0318541_10378165	Not Available	791	Open in IMG/M
3300031546\|Ga0318538_10542838	Not Available	630	Open in IMG/M
3300031572\|Ga0318515_10766840	Not Available	509	Open in IMG/M
3300031573\|Ga0310915_10688114	Not Available	722	Open in IMG/M
3300031679\|Ga0318561_10180074	All Organisms → cellular organisms → Bacteria → Proteobacteria	1142	Open in IMG/M
3300031713\|Ga0318496_10483065	All Organisms → cellular organisms → Bacteria	685	Open in IMG/M
3300031719\|Ga0306917_11597252	Not Available	500	Open in IMG/M
3300031723\|Ga0318493_10421325	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	732	Open in IMG/M
3300031744\|Ga0306918_10865617	Not Available	705	Open in IMG/M
3300031751\|Ga0318494_10085683	Not Available	1719	Open in IMG/M
3300031763\|Ga0318537_10069587	Not Available	1289	Open in IMG/M
3300031763\|Ga0318537_10085407	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1164	Open in IMG/M
3300031764\|Ga0318535_10531807	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	522	Open in IMG/M
3300031765\|Ga0318554_10424938	All Organisms → cellular organisms → Bacteria	753	Open in IMG/M
3300031768\|Ga0318509_10462505	All Organisms → cellular organisms → Bacteria	709	Open in IMG/M
3300031768\|Ga0318509_10693566	All Organisms → cellular organisms → Bacteria → Proteobacteria	565	Open in IMG/M
3300031771\|Ga0318546_11215091	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	529	Open in IMG/M
3300031778\|Ga0318498_10512077	All Organisms → cellular organisms → Bacteria	528	Open in IMG/M
3300031779\|Ga0318566_10394003	Not Available	682	Open in IMG/M
3300031782\|Ga0318552_10598986	All Organisms → cellular organisms → Bacteria	562	Open in IMG/M
3300031793\|Ga0318548_10594671	Not Available	538	Open in IMG/M
3300031794\|Ga0318503_10293901	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	527	Open in IMG/M
3300031794\|Ga0318503_10318090	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	506	Open in IMG/M
3300031795\|Ga0318557_10128974	All Organisms → cellular organisms → Bacteria → Proteobacteria	1135	Open in IMG/M
3300031795\|Ga0318557_10550164	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. GbtcB6	530	Open in IMG/M
3300031797\|Ga0318550_10388070	Not Available	676	Open in IMG/M
3300031797\|Ga0318550_10661286	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	501	Open in IMG/M
3300031805\|Ga0318497_10298374	All Organisms → cellular organisms → Bacteria	897	Open in IMG/M
3300031821\|Ga0318567_10541878	All Organisms → cellular organisms → Bacteria	661	Open in IMG/M
3300031835\|Ga0318517_10394771	Not Available	625	Open in IMG/M
3300031845\|Ga0318511_10252654	All Organisms → cellular organisms → Bacteria	791	Open in IMG/M
3300031879\|Ga0306919_10643232	Not Available	818	Open in IMG/M
3300031880\|Ga0318544_10055038	All Organisms → cellular organisms → Bacteria	1444	Open in IMG/M
3300031896\|Ga0318551_10850457	All Organisms → cellular organisms → Bacteria	531	Open in IMG/M
3300031897\|Ga0318520_10980663	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	533	Open in IMG/M
3300031910\|Ga0306923_10764184	Not Available	1070	Open in IMG/M
3300031941\|Ga0310912_10424893	Not Available	1035	Open in IMG/M
3300031946\|Ga0310910_10452992	Not Available	1018	Open in IMG/M
3300031947\|Ga0310909_10549056	Not Available	967	Open in IMG/M
3300031954\|Ga0306926_11055862	Not Available	963	Open in IMG/M
3300031954\|Ga0306926_11648417	All Organisms → cellular organisms → Bacteria	734	Open in IMG/M
3300031954\|Ga0306926_12006730	All Organisms → cellular organisms → Bacteria	650	Open in IMG/M
3300031962\|Ga0307479_10023438	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	5845	Open in IMG/M
3300031981\|Ga0318531_10106692	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1237	Open in IMG/M
3300032025\|Ga0318507_10347340	Not Available	646	Open in IMG/M
3300032041\|Ga0318549_10122224	All Organisms → cellular organisms → Bacteria	1147	Open in IMG/M
3300032041\|Ga0318549_10403845	Not Available	616	Open in IMG/M
3300032042\|Ga0318545_10059799	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1300	Open in IMG/M
3300032054\|Ga0318570_10141678	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1072	Open in IMG/M
3300032059\|Ga0318533_10941256	Not Available	634	Open in IMG/M
3300032060\|Ga0318505_10333619	All Organisms → cellular organisms → Bacteria	716	Open in IMG/M
3300032063\|Ga0318504_10122420	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Enhydrobacter → Enhydrobacter aerosaccus	1181	Open in IMG/M
3300032064\|Ga0318510_10095807	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Paracoccus → Paracoccus sulfuroxidans	1122	Open in IMG/M
3300032076\|Ga0306924_11159572	All Organisms → cellular organisms → Bacteria	839	Open in IMG/M
3300032090\|Ga0318518_10463674	All Organisms → cellular organisms → Bacteria	649	Open in IMG/M
3300032091\|Ga0318577_10622909	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	512	Open in IMG/M
3300032174\|Ga0307470_10970882	All Organisms → cellular organisms → Bacteria	673	Open in IMG/M
3300032261\|Ga0306920_101298305	Not Available	1047	Open in IMG/M
3300032515\|Ga0348332_10568396	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1036	Open in IMG/M
3300032892\|Ga0335081_12669896	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. GbtcB6	511	Open in IMG/M
3300033289\|Ga0310914_10382440	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1273	Open in IMG/M
3300033290\|Ga0318519_10208822	All Organisms → cellular organisms → Bacteria → Proteobacteria	1116	Open in IMG/M
3300033290\|Ga0318519_10287081	All Organisms → cellular organisms → Bacteria	960	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	96.30%
Aquatic	Environmental → Aquatic	3.70%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	95.37%
Freshwater	Environmental → Aquatic → Freshwater	3.70%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	90.74%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	3.70%
Loam	Environmental → Terrestrial → Soil → Loam	2.78%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.85%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	83.33%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	7.41%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.78%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.78%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.85%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.93%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	61.11%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	19.44%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	7.41%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.78%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.78%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.85%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.93%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.93%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017928	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1	Environmental	Open in IMG/M
3300017932	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022533	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300027039	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 14 (SPAdes)	Environmental	Open in IMG/M
3300027701	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM3 (SPAdes)	Environmental	Open in IMG/M
3300030969	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA12 Emin (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031794	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032042	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0066903_1036676303	3300005764	Tropical Forest Soil	MQMKLKIALAAAGFALATNPVFAVEMPTDGSKNFSTPADAPSYFTNETVPESARVANPAT
Ga0066903_1060643072	3300005764	Tropical Forest Soil	MQARLKIAVAAAGFTLATTPAFAVEMPTDGSKNFSPPTDAPSYFTNETVPESVRVDRAASFDKEDAGIGATTPD
Ga0126373_110366843	3300010048	Tropical Forest Soil	MQTKLKTALGAVGFALATIPAFAVEMPTEGSKNFSTPSDAPSYFTNEATPESARVGRAVTFDEEDARIGSTTPDV
Ga0074044_103941023	3300010343	Bog Forest Soil	MQIKLTNVLVAAGFALASFPALAGEMPADGTKNFSTPNEAPSYFANETVPESARVD
Ga0126376_112230271	3300010359	Tropical Forest Soil	MQIKLKIALASVCFTLATIPAFAVEMPTDGSKNFSTPNDAPSYFTNETIPESARVDHAATFDNEDTGVR
Ga0126372_133331982	3300010360	Tropical Forest Soil	MQIKLTITAAAAFFVLASFPVPAVEMPAEGTKNFSAPGEAPSYFANETVPESARVANPATFTREDVAAVP
Ga0126379_122393531	3300010366	Tropical Forest Soil	MQTRLKTALAAAGFALATIPAFAVEMPTDGSKNFSTPSDAPSYFTNEAVPESARFDRAATFDEEETGIGSTTPEVGPAVSA
Ga0126381_1003698574	3300010376	Tropical Forest Soil	MRTRLKIAFAAAGFALAASPALAAEMPTDGSKNFSAPSDAPSYFANETAPESARIDRQATFTSEDVT
Ga0126381_1010972523	3300010376	Tropical Forest Soil	MQIKLKIALAATGFALAIIPAVAVEMPTDGSKNFSTPNDAPAYFANEAVPESARVANPATFTREDVAAAP
Ga0126381_1036359012	3300010376	Tropical Forest Soil	MQMKLKIALAAAGFALATNPVFAVEMPTDGSKNFSTPADAPSYFTNETVPESARVANPATFTSEDVAA
Ga0182036_103338721	3300016270	Soil	MQTRLKIALAAVGVAVAAIPAFAVEMPTDGSKNFSPPTAAPSYFTNETLPESARVDRAASFDEEDAGGGATTP
Ga0182035_107714222	3300016341	Soil	MQTRLKIALDAVGFALAVIPAFAVEMPTDGSKNFSPPTDAPSYFTNETVPESARVD
Ga0182035_117345541	3300016341	Soil	MQTRLKIALAAAGFALATNPAFAVEMPTDGSKNFSPPTDAPSYFTNETVPES
Ga0182035_121573522	3300016341	Soil	MQIKLKIALAAASFALATIPVFAGEMPTDGTKNFSTPTDAPSYFTNETVPESARVA
Ga0182037_108022891	3300016404	Soil	MQTGLKTALAAARFALVTIPAFAVEMPTDGSKNFSAPSDAPSYFTNEAIPESARVDRAATFDNEDTGVRSAAPED
Ga0182037_116799411	3300016404	Soil	MQTRLKIALAAVGVAVAAIPAFAVEMPTDGSKNFSPPTAAPSYFTNETLPESARVDRAASFDEEDAGGGATTPDVGPAVSVGTDTT
Ga0182038_112303011	3300016445	Soil	MQTRLKIALAAVGFALAASPTFAVEMPTDGSKNFSPPTDAPSYFTNETVPETARVDR
Ga0187806_11167142	3300017928	Freshwater Sediment	MQIKLTIALVAAGFALASFPAFAAEMPADGTKNFSTPSDAPSYFAHETVPESARVDRAATFDREDLAEGPAISDVEPAVSV
Ga0187814_103095622	3300017932	Freshwater Sediment	MQIKLTIALVAAGFALASFPAFAAEMPADGTKNFSTASDVLSFFAHVTVPE
Ga0187816_101138452	3300017995	Freshwater Sediment	MQIKLTIALVAAGFALASFPAFAAEMPADGTKNFSTPSDAPSYFAHETVPESARVDRAATFDREDLAEGPAISDVEPAV
Ga0210403_103896352	3300020580	Soil	MQKITLAAAGFALAAVPTFAVEMPTDGSKNFSPPAAAPAYFANEAVPESARVANPATFSDEE
Ga0210399_109276181	3300020581	Soil	MQIKFKIAIAVTGFALATVPAFAVEMPIDGSKNFSAPGDAPSYFANEAVPEAARVDHSASFTSEDVAAAPDAEPATSV
Ga0210384_107296293	3300021432	Soil	MQIKLKIALAAAGFALATIPAFAVEMPTDGSKNFSTPADAPAYFANEAVPEAARVANQATFTSE
Ga0126371_123428912	3300021560	Tropical Forest Soil	MQTRLKTALGAAGVALATIPAFAAEMPTEGSKNFSTPSDAPSYFTNEAVPESARVHRAVTFDEEDARIGSTTPDVRPAVSPGM
Ga0242662_103118712	3300022533	Soil	MPIFAMEMTSGGEIMQIKLKIALAAAGFALATIPAFAVEMPTDGSKNFSTPADAPAYFANEAVPESARVANPATFT
Ga0207855_10335362	3300027039	Tropical Forest Soil	MQIRLKIALAAVSFALATIPAFAVEMPTDGSKNFSTPNDAPSYFTNETVPESARVANPVPFTSEDVAAAPEDG
Ga0209447_101273182	3300027701	Bog Forest Soil	MQIKLTNVLVAAGFALASFPAFAAEMPADGTKNFSAPSDAPAYFANETVPESARVDHAATFTREEVAAAPEGSDVEPAVSVGTGRHG
Ga0075394_120695562	3300030969	Soil	MQIKFKIAIAVTGFALATVPAFAVEMPIDGSKNFSAPGDAPSYFANEAVPEAARVDHSASFTSEDVAAAPD
Ga0170823_162336241	3300031128	Forest Soil	MQIKFKTALAVAGFALATVPAFAVEMPTDGSKNFSTPADAPSYFANEAVPESARVDRPANFTHEDV
Ga0318516_104111711	3300031543	Soil	MQTRLKITLAAAGFTLAASPGFAVEMPTDGSKNFSAPSEAPSYFANETAPESARIDRQETFTSEDVATAPDAGPTSP
Ga0318534_103840852	3300031544	Soil	MQTRLKIALAAVGVAVAAIPAFAVEMPTDGSKNFSPPTAAPSYFTNETLPESAR
Ga0318541_103781651	3300031545	Soil	MQTRLKIALGAVGFALAAIPAFAVEMPTDGSKNFSPPADAPSYFTNETVPESARV
Ga0318538_104167702	3300031546	Soil	MQTRLKIALAAAGFALAAIPAFAAEMPTDGSKNFSTPTAAPSYFTNEAVPESGR
Ga0318538_105428382	3300031546	Soil	MQTRLKIALDAVGFALAVIPAFAVEMPTDGSKNFSPPTDAPSYFTNETVPESARVDRAESFDNEDVGIGATTPDVGPAVSV
Ga0318515_107668402	3300031572	Soil	MQTRLKIALAAVGVAVAAIPAFAVEMPTDGSKNFSPPTAAPSYFTNETLPESARVDR
Ga0310915_106881141	3300031573	Soil	MQTMLKIALAAVGFALAAIPAFAVEMPTDGSKNFTSPTDAPSYFTSETVPESARVDRAASFDEEDV
Ga0318555_101014405	3300031640	Soil	MQTRLKIALAAVGFALAASPTFAVEMPTDGSKNFSPPTDAPSYFTNETVPETARV
Ga0318561_101800741	3300031679	Soil	MQIKLKIALAAASFALATIPVFAGEMPTDGTKNFSTPTDAPSYFANETVPESARVDHATPFTSEDVAAVPEDG
Ga0318496_104830651	3300031713	Soil	MQIKLKIALAAASFALATIPVFAGEMPTDGTKNFSTPTDAPSYFANETVPESARVDHAT
Ga0306917_115972522	3300031719	Soil	MQTMLKIALAAVGFALAAIPAFAVEMPTDGSKNFTSPTDAPSYFTSETVPESARVDRAASFDEEDVGATTPDVGDTTQYDRH
Ga0318493_104213252	3300031723	Soil	LKIALAAGGFALATIPAFAVEMPTDGSKNFSPPTDAPSYFTNETVPESARVDRADAGIGVTT
Ga0318500_101325101	3300031724	Soil	MQTMLKIALAAVGFALAAIPAFAVEMPTDGSKNFTSPTDAPSYFTSETL
Ga0306918_108656171	3300031744	Soil	MQTRLKIALDAVGFALAVIPAFAVEMPTDGSKNFSPPTDAPSYFTNETVPESARVDRAD
Ga0318502_100959335	3300031747	Soil	MQTRLKIALAAVGFALAASPTFAVEMPTDGSKNFSPPTDAPSYFTNET
Ga0318494_100856835	3300031751	Soil	MQTRLKIALGAVGFALAAIPAFAVEMPTDGSKNFSPPTDAPSYLTNETLPESARVDRAASFDEED
Ga0318494_103188413	3300031751	Soil	MQTRLKIALAAAGFALAAIPAFAAEMPTDGSKNFSTPTAAPSYFTNEAVPESG
Ga0318537_100695872	3300031763	Soil	MQTRLKIALAAVGVAVAAIPAFAVEMPTDGSKNFSPPTAAPSYFTNETLPESARVDRAASFDEEDAGGGATTPDVGPAVSVG
Ga0318537_100854071	3300031763	Soil	MQIKLKIALAAASFALATIPVFAGEMPTDGTKNFSTPTDAPSYFANETVPESARVDHATPFTSE
Ga0318537_101802983	3300031763	Soil	MQTRLKIALAAVGFALAASPTFAVEMPTDGSKNFSPPTDAPSYFTNETVPE
Ga0318535_105318072	3300031764	Soil	MQTRLKIALAAAGFALAAIPAFAAEMPTDGSKNFSTPTAAPSYFTNEAVPESARVDRS
Ga0318554_104249381	3300031765	Soil	MQIKLKIALAAACFALGTIPAFAGEMPTDGSKNFSTPSDAPSYFINETVPESARVDHAT
Ga0318509_104625051	3300031768	Soil	MGREIMQIRLKIALAAACFALGTIPAFAGEMPTDGSKNFSTPNDAPSYFTNETVPESARVDHATPFTS
Ga0318509_106935662	3300031768	Soil	MEMTVGGEIMQTRLKITLAAAGFTLAASPGFAVEMPTDGSKNFSAPSEAPSYFANETAPESARIDRQETFTSEDV
Ga0318546_112150912	3300031771	Soil	MQTRLKIALAAAGFALATIPAFAAEMPTDGSKNFSPPSDAPSYFANETVPESARVDRAAAFDKEDAGIGPA
Ga0318498_105120771	3300031778	Soil	MQTRLKIVLAAAGFALAAIPAFAAEMPTDGSKNFSTPTVAPSYFTNEAVPESARVDRSADFSSEDVAAAPEDGPAVSA
Ga0318566_103940031	3300031779	Soil	MQTRLKIALDAVGFALAVIPAFAVEMPTDGSKNFSPPTDAPSYFTNETMPESARVDRAD
Ga0318552_105989861	3300031782	Soil	MGREIMQIRLKIALAAACFALGTIPAFAGEMPTDGSKNFSTPNDAPSYFTNETVPE
Ga0318548_105946712	3300031793	Soil	MQTRLKIALAAVGVAVAAIPAFAVEMPTDGSKNFSPPTAAPSYFTNETLPESARVDRAAS
Ga0318503_102939012	3300031794	Soil	MQIKLKIALAAACFALGTIPAFAGEMPTDGSKNFSTPSDAPSYFINETVPESARVDHATPFTSEDVA
Ga0318503_103180902	3300031794	Soil	MQTRLKIALAAAGFALATIPAFAAEMPTDGSKNFSPPSDAPSYFANETVPESARVDRAAAFDKEDT
Ga0318557_101289741	3300031795	Soil	MQIKLKIALAAASFALATIPVFAGEMPTDGTKNFSTPTDAPSYFANETVPESARVDHATPFTSEDVAAVPE
Ga0318557_105501642	3300031795	Soil	MQTRLKIALAAAGFALATIPAFAAEMPTDGSKNFSPPSDAPSYFANETVPESARVDRAAAFDKEDTGISPMTPDVG
Ga0318550_103880702	3300031797	Soil	MQTRLKIALAAVGVAVAAIPAFAVEMPTDGSKNFSPPTAAPSYFTNETLPESARVDRAASFDEEDAGGGAT
Ga0318550_106612861	3300031797	Soil	MQARLKIAVAAAGFALATIPAFAVEMPTDGSKNFSPPTDAPSYFTNETVPESVRVDRAASFD
Ga0318497_102983742	3300031805	Soil	MQIKLKIALAAASFALATIPVFAGEMPTDGTKNFSTPTDAPSYFANETVPESARVDHATPFTSEDVAAVPEDGPAVSGA
Ga0318567_105418782	3300031821	Soil	MQIKLKIALASVCFTLATIPAFAVEMPTDGSKNFSTPNDAPSYFTNETIPESARVD
Ga0318517_103947711	3300031835	Soil	MVLWGEIMQTRLKIAAAAAGFALATIPAFAVEMPTDGSKNFSPPTDAPSYFTNETVPESARVDRAAA
Ga0318511_102526541	3300031845	Soil	MQIKLKIALASVCFTLATIPVFAVEMPTDGSKNFSTPNDAPSYFTNETIPESARVD
Ga0306919_101039771	3300031879	Soil	MQTRLKIALAAVGFALAASPTFAVEMPTDGSKNFSPPTDAPSYFTNETVPETAR
Ga0306919_106432322	3300031879	Soil	MQTRLKIALGAVGFALAAIPAFAVEMPTDGSKNFSPPTDAPSYFTNETVPESARVDRAASFDNEEAGIGATIPDV
Ga0306919_114512222	3300031879	Soil	MQTRLKIALAAAGFALAAIPAFAAEMPTDGSKNFSTPTAAPSYFTNEAVPES
Ga0306919_114703902	3300031879	Soil	MEIGRGGEIMQIKLKIALAGASFALASIPVFAGEMPTDGTKNFSTPTDAPSYFTNETV
Ga0318544_100550381	3300031880	Soil	MQIKLKIALASVCFTLATIPAFAVEMPTDGSKNFSTPNDAPSYFTNETIPESARVDHAAAFDTE
Ga0318544_102621462	3300031880	Soil	MQTMLKIALAAVGFALAAIPAFAVEMPTDGSKNFTSPTDAPSYFTSETLPESARVD
Ga0318551_108504572	3300031896	Soil	MGREIMQIRLKIALAAACFALGTIPAFAGEMPTDGSKNFSTPNDAPSYFTNETVPESARVDHATPFTSECFVEL
Ga0318520_109806632	3300031897	Soil	MEMTVGGEIMQTRLKITLAAAGFTLAASPGFAVEMPTDGSKNFSAPSEAPSYFANETAPESARIDRQETFT
Ga0306923_107641842	3300031910	Soil	MQTRLKIALDAVGFALAVIPAFAVEMPTDGSKNFSPPTDAPSYFTNETVPESARVDRAESFDNEDVG
Ga0306921_102374571	3300031912	Soil	MQARLKIAVAAAGFALATIPAFAVEMPTDGSKNFSPPTDAPSYFTNETVPESVRV
Ga0310912_104248931	3300031941	Soil	MQTRLKIALAAGGFALATIPAFAVEMPTDGSKNFSPPTDAPSYFTNETVPESARVDRADAGIGVTTSHVGPAVS
Ga0310910_104529921	3300031946	Soil	MQTRLKIALDAVGFALAVIPAFAVEMPTDGSKNFSPPTDAPSYFTNETVPESA
Ga0310909_105490563	3300031947	Soil	MQTRLKIALAAAGFALATIPAFAVEMPTDGSKNFSPPTDAPSYFTNETVPESARVDRAAAFDQQDVGIG
Ga0306926_110558622	3300031954	Soil	MQTRLKIALDAVGFALAVIPAFAVEMPTDGSKNFSPPTDAPSYFTNETVPESARVDRAES
Ga0306926_116484172	3300031954	Soil	MQIKLKIALAAASFALASIPVFAGEMPTDGTKNFSTPTDAPSYFANETVPESARVDHATPFTS
Ga0306926_120067301	3300031954	Soil	MQMKLKIALAAAGFALATNPAFAVEMPTDGSKNFSTPADAPSYFTNETVPESARVANPATFTSEDVA
Ga0307479_100234381	3300031962	Hardwood Forest Soil	MQIKLKIALVAASFALATIPVFAGEMPTDGTKNFSTPNDAPSYFANETVPESARVANPASFTSEDVAAAPQDEPAVSGRTE
Ga0318531_101066923	3300031981	Soil	MQIKLKIALASVCFTLATIPAFAVEMPTDGSKNFSTPNDAPSYFTNETIPESARVDHAAAFDTEDTGV
Ga0318569_104741392	3300032010	Soil	MQTMLKIALAAVGFALAAIPAFAVEMPTDGSKNFTSPTDAPSYFTSETVPESA
Ga0318507_103473401	3300032025	Soil	MEIGPGGEIMQIKFKIALAVAGFTLATVPAFAVEMPTDGSKNFSAPGDAPSYFANEAIPEAGRVD
Ga0318549_101222241	3300032041	Soil	MQIKLKIALAAACFALGTIPAFAGEMPTDGSKNFSTPSDAPSYFINETVPESARVDHATPFT
Ga0318549_104038451	3300032041	Soil	MEMTVGGEIMQTRLKITLAAAGFTLAASPGFAVEMPTDGSKNFSAPSEAPSYFANETAPESARIDRQETFTSED
Ga0318545_100597991	3300032042	Soil	MQIKLKIALAAASFALATIPVFAGEMPTDGTKNFSTPTDAPSYFANETVPESARVASPASFT
Ga0318570_101416783	3300032054	Soil	MQTRLKIVLAAAGFALAAIPAFAAEMPTDGSKNFSTPTVAPSYFTNEAVPESARVDRSADFSSEDVAAAPE
Ga0318533_109412563	3300032059	Soil	MQTRLKIALGAIGFALAAIPAFAVEMPTDGSKNFSPPTDAPSYFTNETVPESAR
Ga0318505_103336191	3300032060	Soil	MGREIMQIRLKIALAAACFALGTIPAFAGEMPTDGSKNFSTPNDAPSYFTNETVPESARVDHATPFTSEDVAAVPE
Ga0318504_101224201	3300032063	Soil	MQIKLKIALAAASFALATIPGFAGEMPTDGTKNFSTPTDAPSYFANETVPESARVASPASFTSEDVAA
Ga0318510_100958075	3300032064	Soil	MQTRLKIALAAVGFALAASPTFAVEMPTDGSKNFSPPTDAPSYFTNETVPETARVDRAASFDEEDAGIGATT
Ga0306924_111574681	3300032076	Soil	MQTRLKIALAAAGFALAAIPAFAAEMPTDGSKNFSTPTAAPSYFTNEAVPESGRVDR
Ga0306924_111595721	3300032076	Soil	MQIKFKIALAVAGFALATVPAFAVEMPTDGSKNFSAPGDAPSYFANEAIPEAGRVDHPANFT
Ga0318518_104636741	3300032090	Soil	MGREIMQIRLKIALAAACFALGTIPAFAGEMPTDGSKNFSTPNDAPSYFTNETVPESARV
Ga0318577_106229091	3300032091	Soil	MQTRLKIALAAAGFALATIPAFAAEMPTDGSKNFSPPSDAPSYFANETVPESARVDRAAAFDKED
Ga0307470_109708822	3300032174	Hardwood Forest Soil	MQIKLKIALVAASFALATIPVFAGEMPTDGTKNFSTPNDAPSNFANETVPES
Ga0306920_1012983051	3300032261	Soil	MQTRLKIALGAIGFALAAIPAFAVEMPTDGSKNFSPPTDAPSYFTNETVPESARVDRADA
Ga0348332_105683961	3300032515	Plant Litter	MQIKLTKVLVAAGFALASFPALAGEMPADGTKNFSTPNEAPSYFANETVPESARVDHTTPFTAEDVAAAPEDEPAVS
Ga0335081_126698961	3300032892	Soil	MQIKLTIALVAAGFALASFPALGAEMPADGTKNFSAPSDAPSYFAHETVPESARVDRAATFDREDL
Ga0310914_1002055610	3300033289	Soil	MQTRLKIALAAAGVALAAIPAFAVEMPTDGSKNFSPSAAVPSYFTNETLPEPAR
Ga0310914_103824403	3300033289	Soil	MQTMLNIALAAVGFALAAIPAFAVEMPTDGSKNFTSPTDAPSYFTSETLPESTRFDRAASFDEEDV
Ga0318519_102088223	3300033290	Soil	MQIKLKIALAAASFALATIPVFAGEMPTDGTKNFSTPNDAPSYFANETVPESARVA
Ga0318519_102870811	3300033290	Soil	MQIKLKIALAAACFALGTIPAFAGEMPTDGSKNFSTPSDAPSYFINETVPESARVDH

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F089657

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences