Metagenome / Metatranscriptome Family F089663

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F089663
Family Type	Metagenome / Metatranscriptome
Number of Sequences	108
Average Sequence Length	55 residues
Representative Sequence	MALDPAVLKARIDLRVCELKALAAWTAVNWRGRAEREQPPRGLPPPPARRNEDDE
Number of Associated Samples	61
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	63.55 %
% of genes near scaffold ends (potentially truncated)	39.81 %
% of genes from short scaffolds (< 2000 bps)	82.41 %
Associated GOLD sequencing projects	56
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.46

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (57.407 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (42.593 % of family members)
Environment Ontology (ENVO)	Unclassified (63.889 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (56.481 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 39.76% β-sheet: 0.00% Coil/Unstructured: 60.24%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.46
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.46
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF12307	DUF3631	1.85
PF03401	TctC	0.93
PF01699	Na_Ca_ex	0.93
PF03118	RNA_pol_A_CTD	0.93
PF05272	VirE	0.93
PF13289	SIR2_2	0.93
PF13458	Peripla_BP_6	0.93
PF04392	ABC_sub_bind	0.93
PF01939	NucS	0.93
PF13560	HTH_31	0.93
PF01717	Meth_synt_2	0.93
PF10028	DUF2270	0.93
PF00692	dUTPase	0.93
PF02357	NusG	0.93
PF06048	DUF927	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG0202	DNA-directed RNA polymerase, alpha subunit/40 kD subunit	Transcription [K]	0.93
COG0250	Transcription termination/antitermination protein NusG	Transcription [K]	0.93
COG0387	Cation (Ca2+/Na+/K+)/H+ antiporter ChaA	Inorganic ion transport and metabolism [P]	0.93
COG0530	Ca2+/Na+ antiporter	Inorganic ion transport and metabolism [P]	0.93
COG0620	Methionine synthase II (cobalamin-independent)	Amino acid transport and metabolism [E]	0.93
COG0717	dCTP deaminase	Nucleotide transport and metabolism [F]	0.93
COG0756	dUTP pyrophosphatase (dUTPase)	Defense mechanisms [V]	0.93
COG1637	Endonuclease NucS, RecB family	Replication, recombination and repair [L]	0.93
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.93
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.93
COG5519	Predicted ATPase domain of Cch-like helicases, DUF927 family	General function prediction only [R]	0.93
COG5545	Predicted P-loop ATPase and inactivated derivatives	Mobilome: prophages, transposons [X]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.41 %
All Organisms	root	All Organisms	42.59 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.41 %
cellular organisms	root	All Organisms → cellular organisms	42.59 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.41 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	42.59 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.41 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	28.70 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.85 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → environmental samples	0.93 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.41 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	23.15 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	0.93 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.93 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.93 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.93 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.93 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.41 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	11.11 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	6.48 %
Dehalococcoidia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	0.93 %
Blastocatellales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales	0.93 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.93 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.93 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.93 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.41 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	7.41 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	6.48 %
unclassified Dehalococcoidia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia	0.93 %
Pyrinomonadaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae	0.93 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	0.93 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.93 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.93 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.93 %
Desulfuromonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales	0.93 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.93 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.41 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	7.41 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	6.48 %
unclassified Pyrinomonadaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae	0.93 %
Dehalococcoidia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	0.93 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.93 %
Geobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae	0.93 %
Burkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia	0.93 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.93 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.93 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	0.93 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.41 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	6.48 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	5.56 %
unclassified Mesorhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium	0.93 %
Bradyrhizobium archetypum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium archetypum	0.93 %
Pyrinomonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	0.93 %
unclassified Burkholderia	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → unclassified Burkholderia	0.93 %
Geobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geobacter	0.93 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.93 %
Dehalococcoidia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	0.93 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.93 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	0.93 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.41 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	6.48 %
Bradyrhizobium sp. 6(2017)	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 6(2017)	5.56 %
Streptomyces paucisporeus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces paucisporeus	0.93 %
unclassified Geobacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geobacter → unclassified Geobacter	0.93 %
Burkholderia sp. D7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → unclassified Burkholderia → Burkholderia sp. D7	0.93 %
Mesorhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp.	0.93 %
Bradyrhizobium archetypum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium archetypum	0.93 %
Pyrinomonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	0.93 %
Dehalococcoidia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	0.93 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.93 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	0.93 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.41 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	6.48 %
Bradyrhizobium sp. 6(2017)	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 6(2017)	5.56 %
Geobacter sp. OR-1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geobacter → unclassified Geobacter → Geobacter sp. OR-1	0.93 %
Streptomyces paucisporeus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces paucisporeus	0.93 %
Burkholderia sp. D7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → unclassified Burkholderia → Burkholderia sp. D7	0.93 %
Mesorhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp.	0.93 %
Bradyrhizobium archetypum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium archetypum	0.93 %
Pyrinomonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	0.93 %
Dehalococcoidia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	0.93 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.93 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	0.93 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.93 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000793\|AF_2010_repII_A001DRAFT_10078539	Not Available	707	Open in IMG/M
3300004268\|Ga0066398_10062769	All Organisms → cellular organisms → Bacteria → Proteobacteria	783	Open in IMG/M
3300005363\|Ga0008090_10006338	Not Available	558	Open in IMG/M
3300005437\|Ga0070710_10966968	Not Available	618	Open in IMG/M
3300005764\|Ga0066903_100018762	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	7237	Open in IMG/M
3300005764\|Ga0066903_100235375	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces paucisporeus	2800	Open in IMG/M
3300005764\|Ga0066903_100735513	Not Available	1748	Open in IMG/M
3300005764\|Ga0066903_100975520	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	1545	Open in IMG/M
3300005764\|Ga0066903_101285025	Not Available	1366	Open in IMG/M
3300005764\|Ga0066903_101368676	Not Available	1327	Open in IMG/M
3300005764\|Ga0066903_101393615	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → unclassified Burkholderia → Burkholderia sp. D7	1316	Open in IMG/M
3300005764\|Ga0066903_103392448	Not Available	860	Open in IMG/M
3300005764\|Ga0066903_103846756	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium archetypum	806	Open in IMG/M
3300005764\|Ga0066903_103923249	Not Available	798	Open in IMG/M
3300005764\|Ga0066903_104463998	Not Available	747	Open in IMG/M
3300005764\|Ga0066903_105129767	Not Available	694	Open in IMG/M
3300005764\|Ga0066903_107836477	Not Available	549	Open in IMG/M
3300005764\|Ga0066903_109093532	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	502	Open in IMG/M
3300010046\|Ga0126384_10433614	Not Available	1118	Open in IMG/M
3300010361\|Ga0126378_10207992	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp.	2036	Open in IMG/M
3300010361\|Ga0126378_11230344	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	846	Open in IMG/M
3300010366\|Ga0126379_11181151	All Organisms → cellular organisms → Bacteria → Proteobacteria	871	Open in IMG/M
3300010366\|Ga0126379_13390211	Not Available	534	Open in IMG/M
3300010376\|Ga0126381_104973411	Not Available	510	Open in IMG/M
3300010398\|Ga0126383_10222903	Not Available	1829	Open in IMG/M
3300010398\|Ga0126383_10242377	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geobacter → unclassified Geobacter → Geobacter sp. OR-1	1763	Open in IMG/M
3300010398\|Ga0126383_10697364	Not Available	1093	Open in IMG/M
3300010398\|Ga0126383_11001920	Not Available	924	Open in IMG/M
3300010398\|Ga0126383_11273024	Not Available	825	Open in IMG/M
3300010398\|Ga0126383_11751630	Not Available	710	Open in IMG/M
3300010398\|Ga0126383_13071970	Not Available	545	Open in IMG/M
3300010398\|Ga0126383_13171921	Not Available	537	Open in IMG/M
3300010398\|Ga0126383_13316145	Not Available	526	Open in IMG/M
3300012971\|Ga0126369_12561632	Not Available	595	Open in IMG/M
3300016270\|Ga0182036_11525987	Not Available	561	Open in IMG/M
3300016294\|Ga0182041_10455679	Not Available	1100	Open in IMG/M
3300016319\|Ga0182033_10020197	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4037	Open in IMG/M
3300016319\|Ga0182033_11084345	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	715	Open in IMG/M
3300016319\|Ga0182033_11690568	Not Available	573	Open in IMG/M
3300016319\|Ga0182033_11849014	Not Available	548	Open in IMG/M
3300016341\|Ga0182035_10051739	Not Available	2791	Open in IMG/M
3300016341\|Ga0182035_10105474	All Organisms → cellular organisms → Bacteria	2075	Open in IMG/M
3300016422\|Ga0182039_12268943	Not Available	501	Open in IMG/M
3300016445\|Ga0182038_11348769	Not Available	638	Open in IMG/M
3300021560\|Ga0126371_10182856	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2182	Open in IMG/M
3300021560\|Ga0126371_10287406	All Organisms → cellular organisms → Bacteria	1768	Open in IMG/M
3300021560\|Ga0126371_10625579	Not Available	1225	Open in IMG/M
3300021560\|Ga0126371_11621046	Not Available	773	Open in IMG/M
3300021560\|Ga0126371_13338671	Not Available	542	Open in IMG/M
3300031543\|Ga0318516_10085452	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1766	Open in IMG/M
3300031543\|Ga0318516_10176487	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 6(2017)	1230	Open in IMG/M
3300031544\|Ga0318534_10687993	Not Available	578	Open in IMG/M
3300031544\|Ga0318534_10868462	Not Available	506	Open in IMG/M
3300031545\|Ga0318541_10001611	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	8457	Open in IMG/M
3300031545\|Ga0318541_10005526	All Organisms → cellular organisms → Bacteria	5323	Open in IMG/M
3300031546\|Ga0318538_10018153	Not Available	3084	Open in IMG/M
3300031561\|Ga0318528_10354375	Not Available	788	Open in IMG/M
3300031572\|Ga0318515_10037808	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 6(2017)	2386	Open in IMG/M
3300031572\|Ga0318515_10050559	All Organisms → cellular organisms → Bacteria	2091	Open in IMG/M
3300031573\|Ga0310915_10005571	All Organisms → cellular organisms → Bacteria	7001	Open in IMG/M
3300031573\|Ga0310915_10726922	Not Available	700	Open in IMG/M
3300031573\|Ga0310915_10959311	Not Available	598	Open in IMG/M
3300031679\|Ga0318561_10224644	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1021	Open in IMG/M
3300031682\|Ga0318560_10367694	All Organisms → cellular organisms → Bacteria	777	Open in IMG/M
3300031682\|Ga0318560_10384553	Not Available	759	Open in IMG/M
3300031713\|Ga0318496_10023352	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3080	Open in IMG/M
3300031713\|Ga0318496_10055552	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 6(2017)	2059	Open in IMG/M
3300031719\|Ga0306917_10470769	All Organisms → cellular organisms → Bacteria	985	Open in IMG/M
3300031744\|Ga0306918_11031517	Not Available	638	Open in IMG/M
3300031744\|Ga0306918_11349391	Not Available	547	Open in IMG/M
3300031748\|Ga0318492_10348522	All Organisms → cellular organisms → Bacteria → Proteobacteria	775	Open in IMG/M
3300031751\|Ga0318494_10029041	All Organisms → cellular organisms → Bacteria	2813	Open in IMG/M
3300031769\|Ga0318526_10120032	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 6(2017)	1060	Open in IMG/M
3300031770\|Ga0318521_10885428	Not Available	545	Open in IMG/M
3300031771\|Ga0318546_10696985	Not Available	714	Open in IMG/M
3300031779\|Ga0318566_10246741	Not Available	885	Open in IMG/M
3300031794\|Ga0318503_10045881	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1321	Open in IMG/M
3300031796\|Ga0318576_10276264	Not Available	793	Open in IMG/M
3300031819\|Ga0318568_10710440	Not Available	625	Open in IMG/M
3300031819\|Ga0318568_10784020	Not Available	591	Open in IMG/M
3300031860\|Ga0318495_10502256	Not Available	529	Open in IMG/M
3300031879\|Ga0306919_10120343	Not Available	1878	Open in IMG/M
3300031880\|Ga0318544_10149048	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	896	Open in IMG/M
3300031890\|Ga0306925_10360638	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1560	Open in IMG/M
3300031910\|Ga0306923_10322121	Not Available	1764	Open in IMG/M
3300031910\|Ga0306923_10593735	Not Available	1244	Open in IMG/M
3300031910\|Ga0306923_11504142	Not Available	704	Open in IMG/M
3300031912\|Ga0306921_12711686	Not Available	509	Open in IMG/M
3300031912\|Ga0306921_12744443	Not Available	505	Open in IMG/M
3300031945\|Ga0310913_11058984	Not Available	567	Open in IMG/M
3300031954\|Ga0306926_10326175	All Organisms → cellular organisms → Bacteria	1899	Open in IMG/M
3300031954\|Ga0306926_11456031	Not Available	792	Open in IMG/M
3300032010\|Ga0318569_10457901	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	595	Open in IMG/M
3300032043\|Ga0318556_10033606	All Organisms → cellular organisms → Bacteria	2403	Open in IMG/M
3300032043\|Ga0318556_10277898	Not Available	875	Open in IMG/M
3300032052\|Ga0318506_10048911	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1700	Open in IMG/M
3300032054\|Ga0318570_10097759	All Organisms → cellular organisms → Bacteria → Proteobacteria	1278	Open in IMG/M
3300032059\|Ga0318533_10052579	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2714	Open in IMG/M
3300032065\|Ga0318513_10272103	Not Available	822	Open in IMG/M
3300032066\|Ga0318514_10232261	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	969	Open in IMG/M
3300032068\|Ga0318553_10110821	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 6(2017)	1404	Open in IMG/M
3300032089\|Ga0318525_10521918	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	607	Open in IMG/M
3300032089\|Ga0318525_10662030	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 6(2017)	532	Open in IMG/M
3300032090\|Ga0318518_10133078	Not Available	1257	Open in IMG/M
3300032094\|Ga0318540_10392519	Not Available	670	Open in IMG/M
3300032261\|Ga0306920_101493977	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	965	Open in IMG/M
3300033290\|Ga0318519_10354325	All Organisms → cellular organisms → Bacteria	868	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	100.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	85.19%
Loam	Environmental → Terrestrial → Soil → Loam	14.81%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	64.81%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.44%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	13.89%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	42.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	21.30%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	19.44%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	13.89%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.93%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.93%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.93%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300004268	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031794	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A001DRAFT_100785392	3300000793	Forest Soil	MALDPAVLKARIDLRVHRLKLLAAWTAVNWRGRADSEQSLRGRVEQEQLLRXLPPPPGRRDEDNER*
Ga0066398_100627692	3300004268	Tropical Forest Soil	MALDPAVLKARIDLRVAQLKQLAAWTTVNWRGRAEREQQPRGLPPPPARRNEDDE*
Ga0008090_100063381	3300005363	Tropical Rainforest Soil	MALDPAVLKARIDLRIYQLKRLAAWTVANCRGRAEREQLLRGLPPLPAHRNEDDE*
Ga0070710_109669681	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MALDPAVLKARIDLRVCELKAFAAWTAANWRGRAEPERLSRGLPPPPAEEAALGTIIATREQV*
Ga0066903_1000187625	3300005764	Tropical Forest Soil	MALDPAVLKARIDRRVCEPRLLAAWAAVNFRRRVEREGLLPRGLLPPPLVRRNEDDE*
Ga0066903_1002353756	3300005764	Tropical Forest Soil	MALDPAVLKARIDLRVAQLKQLAAWTTVNWRGRAEREQQPRGLP
Ga0066903_1007355133	3300005764	Tropical Forest Soil	MALDPAILKARIDRRVCELRLLAAWTAVNFRRRVEREQQLRDLPPPPARRNENDE*
Ga0066903_1009755203	3300005764	Tropical Forest Soil	MALDPATLKARIDWRVCELKLLAAETAVSCARERERPMRDLPPPSRRRNEDDA*
Ga0066903_1012850252	3300005764	Tropical Forest Soil	MALDPVALKARIDLRVCQLKQLAAWTAVNWRGRVEREQPPRGLPPPPARRNEDDE*
Ga0066903_1013686761	3300005764	Tropical Forest Soil	MALDPAVLKARIEWRISELKVLAAQMAVNWGRACERERQTRGLPSPPARRDEDE*
Ga0066903_1013936153	3300005764	Tropical Forest Soil	MALDPAVLKARIDRRVCELKLLVAWTAVNWRGRAEQQLRGRAEQEQLLRGLPPPPARRNEDDE*
Ga0066903_1033924481	3300005764	Tropical Forest Soil	GMALDPAVLKARIDLRICQLKWLAAWTVANCRERAEREQLLRGLPPLPTHRNEDDDK*
Ga0066903_1038467563	3300005764	Tropical Forest Soil	MALDPAVLKARLNLRICQLKWLAAWTVVNCRERVEREQLLRGLPLLPARRNRDEDDDE*
Ga0066903_1039232491	3300005764	Tropical Forest Soil	MALDPAVLKARIDLRVCELRVLAAETAVSWARPRERERLMRDLPPPPAHRNEDNE*
Ga0066903_1044639981	3300005764	Tropical Forest Soil	AAGMALDPATLEARIHLRVCELKALAAWTAVNCRGHMAREQLLRGLPRLPARRDRDEDDDE*
Ga0066903_1051297673	3300005764	Tropical Forest Soil	MALDPAVLKARIHLRVCELKALAAWTVVNCRGRVEREQLLRGLPPLPVRRNDNDDE*
Ga0066903_1078364772	3300005764	Tropical Forest Soil	MALDPTVLKARIHLRVCELKALAAWTVVNCRGRVERDQLLRGLPPLPARRNSDEDDE*
Ga0066903_1090935322	3300005764	Tropical Forest Soil	MMLDPAVLKARIDLRICQLKQLAAWTAVNCRGRVEREQLLRGLPPLPARRNED
Ga0126384_104336142	3300010046	Tropical Forest Soil	MALDPVVLKARIEWRVCQLKLLAAWVVVNCCGRAEREQLLRGLPPPPARRNEDDE*
Ga0126378_102079922	3300010361	Tropical Forest Soil	MALDSAVLKARIDRRVCEFRLLAAWAAMNFRRRVEREQLLRDLPPPFARRNEDDER*
Ga0126378_112303442	3300010361	Tropical Forest Soil	MALDPAVLKARIDLRIYQLKALAAWTVANCRGRVEREQLLRGLPPLPARRNEDDE*
Ga0126379_111811511	3300010366	Tropical Forest Soil	MALDPAVLKARIDLRVCQLKWLAAWTAVNWRGRAEPEQLPRGLPPPPTRRNEDDE*
Ga0126379_133902112	3300010366	Tropical Forest Soil	MALDPAVLKVRIDRRVCELKLLAAWTVANCRGRVEGEQLTRGLPPLPAYRNEDDE*
Ga0126381_1049734111	3300010376	Tropical Forest Soil	MALDPAVLKARIDRRVCELKLLAARTAVNWRGRAEQQLRGRAEQEQLLRGLPPPPARRNEDDE*
Ga0126383_102229033	3300010398	Tropical Forest Soil	MALDPAILKARIDLRICQLKRLAAWTAVNCRGRVEWEQLLRGLPRLPARRDEDDE*
Ga0126383_102423774	3300010398	Tropical Forest Soil	MALDPVVLKVRIDLRICQLKQLAAWTAVNWRGRAEREQLPRGLPPPPARRNEDDE*
Ga0126383_106973641	3300010398	Tropical Forest Soil	MALDPATLEARIHLRVCELKALAAWTAVNCRGHMAREQLLRGLPRLPARRD
Ga0126383_110019201	3300010398	Tropical Forest Soil	MALDPAVLKARIELRVCQLKKQLAAWTALNWRMHAEREQPRRGLPPPPGRRDEDDE*
Ga0126383_112730244	3300010398	Tropical Forest Soil	MALDPAVLKVRIDLRVYQLKQLAAWTTVNWRGRPEREQPPRDLPPPPARRDDDDE*
Ga0126383_117516303	3300010398	Tropical Forest Soil	MALDPAVLKARIEWRISELKVLAAQTAVNWGRACERERQTRGLPSPPARRDEDE*
Ga0126383_130719702	3300010398	Tropical Forest Soil	LDPAVLKARIDLRVCELRLLAAWITLNWRGRAEPEQPPRGRPPPSARGNEDDDE*
Ga0126383_131719212	3300010398	Tropical Forest Soil	MALDPAVLKAHIDLRVCQLKQLAAWTVANCRGRVEREQLLRGLPPLPARRDEDDE*
Ga0126383_133161452	3300010398	Tropical Forest Soil	MALDPAVLKVRIDRRVCELKLLVAWTVANCRGRVEGEQLTRGLPPLPAYRNEDDE*
Ga0126369_125616322	3300012971	Tropical Forest Soil	MALDPAVLKARIDWRVCELKLLAAWITLNWRGRAEREQLPRGLPPPPARRNEDDAG*
Ga0182036_115259872	3300016270	Soil	MALDPAVLKARIDLRVAQLKQLAAWTVVNWRARAEREQLPRGLPPPPARRNAD
Ga0182041_104556791	3300016294	Soil	DPVVLKARIDLRVYQLKWLAAWTVANCRERAEREQLLRGLPPLPARRNRDEDDDE
Ga0182033_100201974	3300016319	Soil	MALDPAVLKARIDLRIYQLKLLAAWTVASCRGRAEREQLLHSLPLLPAHRNEDDE
Ga0182033_110843451	3300016319	Soil	MALDPAVLKARIDLRVCELKALAAWTAVNWRGRAEREQPPRGLPPPPARRNEDDE
Ga0182033_116905681	3300016319	Soil	RRAACGIGCGMALDPAVLKARIDLRVCQLKELAAWTAVNCRGRVEREQLLRGLPPLPARRDEE
Ga0182033_118490142	3300016319	Soil	MALDPAVLKARIDLRVCELKLLAAWITLKWRGRAEREQPPRGRVDEEQLLRGLPPPPARRNED
Ga0182035_100517393	3300016341	Soil	MALDPAVLKARIDLRVCELKPLAAWTVVNCRGRVEREQVLRGLPPLPARRDEDDE
Ga0182035_101054744	3300016341	Soil	MALDPAVLKARIDLRVAQLKQLAAWTTVNWRGRAEREQQPRGLPPPPA
Ga0182039_122689431	3300016422	Soil	MALDPAVLKARIDLRVCQLKELAVWTALNWRGHAERKQPPRDPPPARRNED
Ga0182038_113487691	3300016445	Soil	MALDPAILKARIDSRVYQLKLLAAWTVANCRGRAEREQLLRGLPPLPARRNDDDD
Ga0126371_101828562	3300021560	Tropical Forest Soil	MALDPAVLKARIDLRVAQLKQLAAWTTVNWRGRAEREQQPRGLPPPPARRNEDDE
Ga0126371_102874062	3300021560	Tropical Forest Soil	MALDPAVLKARIDRRVCELKLLVAWTAVNWRGRAEQQLRGRAEQEQLLRGLPPPPARRNEDDE
Ga0126371_106255792	3300021560	Tropical Forest Soil	MALDPAILKARIDRRVCELRLLAAWTAVNFRRRVEREQQLRDLPPPPARRNENDE
Ga0126371_116210461	3300021560	Tropical Forest Soil	MALDPAILKARIDLRVYQLKQLAAWTAVNWRGRAEREQLPRGLPPPPARRNEDDE
Ga0126371_133386713	3300021560	Tropical Forest Soil	MALDPAVLKARIHLRVCELKALAAWTVVNCRGRVEREQLLRGLSPLPARRDRDEDDDE
Ga0318516_100854523	3300031543	Soil	MALDPAVLKARIDLRIYQLKLLAAWTVASCRGRAEREQLLHGLPLLPAHRNEDDE
Ga0318516_101764873	3300031543	Soil	MALDPAVLKARIDLRICQLKRLAAWTVANCRGRVEREQLLRGLPPLPVRRDEDDDE
Ga0318534_106879931	3300031544	Soil	MALDLAVLKVRIDLRVCELKALAAWTALNWRGHAEREQPPRGLPPPPARRNEDDE
Ga0318534_108684622	3300031544	Soil	MALDPAILKARIDSRVYQLKLLAAWTVANCRGRAEREQLLRGLPPLPARRNDDDDEG
Ga0318541_100016115	3300031545	Soil	MALDPAILKARIDLRIYQLKLLAAWTVASCRGRAEREQLLHGLPLLPAHRNEDDE
Ga0318541_100055262	3300031545	Soil	MTLDPAVLKARIDLRVYQLKWLAAWTVANCRERAEREQLLRGLPPLPARRNENDDQVISGRQPSSWPPWSR
Ga0318538_100181533	3300031546	Soil	MALDPAVLKARIDRQVYQLKQLAAWTVVNCRGRAEREQLLRGLPPLPARRDEDDE
Ga0318528_103543753	3300031561	Soil	MARDPAVLKVRIDLRVHQLKPLAAWTAVNWRGRVEREQPPRGLPPPPARRNEDDE
Ga0318515_100378084	3300031572	Soil	MALDSAVLKARIDLRICQLKRLAAWTVANCRGRVEREQLLRGLPPLPVRRDEDDDE
Ga0318515_100505591	3300031572	Soil	MTLDPAVLKARIDLRVYQLKWLAAWTVANCRERAEREQLLRGLPPLPARRNENDDQVISGRQ
Ga0310915_100055711	3300031573	Soil	MTLDPAVLKARIDLRVYQLKWLAAWTVANCRERAEREQLLRGLPPLSARR
Ga0310915_107269222	3300031573	Soil	MALDPAVLKARIDVRICELKVLAAWTAVNWRGRAEPELPCGPSPPPARRNEDE
Ga0310915_109593111	3300031573	Soil	MALDPAVLKARIDLRVCQLKELAVWTALNWRGHAERKQPPRDPPPARRNEDDE
Ga0318561_102246441	3300031679	Soil	ALDPAVLKARIDVRICELKVLAAWTAVNWRGRAEPELPCGPSPPPARRNEDE
Ga0318560_103676942	3300031682	Soil	MALDLAVLKVRIDLRVCELKALAAWTALNWRGHAEREQPPRGLPPPPAR
Ga0318560_103845532	3300031682	Soil	VFKVRIDLRVCELKALAAWTALNWRGHAEREQPPRGLPPPPARRNEDDE
Ga0318496_100233521	3300031713	Soil	ALGMALDTAVLKARIDLRVCELRVLAAETAVSWARPRERERLMRDLPPPPAHRNEDNE
Ga0318496_100555523	3300031713	Soil	AVLKARIDLRICQLKRLAAWTVANCRGRVEREQLLRGLPPLPVRRDEDDDE
Ga0306917_104707692	3300031719	Soil	MALDPAVLKARIDLRVAQLKQLAAWTTVNWRGRAEREQQPRGLPPPPHA
Ga0318500_101021422	3300031724	Soil	MALDPAVLKARIDLRVCELRVLAAETAVSWARPRERERLMRDLPPPPA
Ga0306918_110315171	3300031744	Soil	MALDPAVLKARINLRICQLKWLAAWTVVNCRERVEREQLLRGLPLLPARRNRDE
Ga0306918_113493911	3300031744	Soil	MARDPAVLKVRIDLRVHQLKPLAAWTAVNWRGRVEREQPPRGLPPPPARRNE
Ga0318492_103485222	3300031748	Soil	MALDPAVLKARIDLRVAQLKQLAAWTTVNWRGRAEREQQPRGLPPPARRNEDDE
Ga0318494_100290414	3300031751	Soil	MALDPAVLKARIDRQVYQLKQLAAWTVVNCRGRAEREQLLRGLPPLPARRDED
Ga0318526_101200321	3300031769	Soil	LKARIDLRICQLKRLAAWTVANCRGRVEREQLLRGLPPLPVRRDEDDDE
Ga0318521_108854281	3300031770	Soil	VLKVRIDLRVCELKALAAWTALNWRGHAEREQPPRGLPPPPARRNEDDE
Ga0318546_106969853	3300031771	Soil	MARDPAVLKVRIDLRVHQLKPLAAWTAVNWRGRVEREQQPRGLPPPARRNEDDE
Ga0318566_102467412	3300031779	Soil	VLKARIDRQVYQLKQLAAWTVVNCRGRAEREQLLRGLPPLPARRDEDDE
Ga0318503_100458814	3300031794	Soil	MALDPAVLKARIDLRIYQLKLLAAWTVASCRGRAEREQLLRGLPPLPARRNDDDDEG
Ga0318576_102762641	3300031796	Soil	MARDPAVLKVRIDLRVHQLKPLAAWTAVNWRGSVEREQPPRGLPPPPARRNEDDE
Ga0318568_107104401	3300031819	Soil	RIDSRVYQLKLLAAWTVANCRGRAEREQLLRGLPPLPARRNDDDDEG
Ga0318568_107840201	3300031819	Soil	MALDPAVLKARIDLRIYQLKLLAAWTVASCRGRAEREQLLHGLPLLPAHRN
Ga0318495_105022561	3300031860	Soil	MTLDPAVLKARIDLRVYQLKWLAAWTVANCRERAEREQLLRGLPPLPARRNENDDQVI
Ga0306919_101203432	3300031879	Soil	MALDPAVLKARIDLRVCELRVLAAETAVSWARPRERERLMRDLPPPPAHRNEDNE
Ga0318544_101490481	3300031880	Soil	MALDPAVLKARIDLRIYQLKLLAAWTVASCRGRAEREQLLHGLPLLPAH
Ga0306925_103606381	3300031890	Soil	MALDPAVLKARIDVRICELKVLAAWSAVNWRGRAEPELPCGPSPPPARRNEDE
Ga0306923_103221214	3300031910	Soil	MALDPAVLKARIDRQVYQLKQLAAWTVVNCRGRAEREQLLRGLPPLP
Ga0306923_105937353	3300031910	Soil	MALDPAVLKARIDLRVCELKALAAWTVVNCRGRVEREQLLRGLPPLPARRDEE
Ga0306923_115041422	3300031910	Soil	MALDPAVLKARINLRICQLKWLAAWTVVNCRERVEREQLLRGLPLLPARRNRDEDDDE
Ga0306921_127116861	3300031912	Soil	MALDPAVLKARIDLRVCELKLLAAWITLNWRGRAEREQPPRGRVDEEQLLRGLPPPPARRNEDDE
Ga0306921_127444431	3300031912	Soil	MALDPVVLKARIDLRVYQLKWLAAWTVANCRERAEREQLLRGLPPLPARRNRDEDDDE
Ga0310913_110589842	3300031945	Soil	MAFDPAVLKARIDLRVAQLKQLAAWTAVNCRGCVEREQLLRGLPPLPARRDRDEDDDE
Ga0306926_103261751	3300031954	Soil	MALDPAVLKARIDLRVCQLKELAVLTVLNCRGRAEREQLLRGLPPLPAR
Ga0306926_114560312	3300031954	Soil	MALDPAILKARIDLRVCQLKQLAAWTALNWRVHAEREQPPRGVPPPPARRNEDDE
Ga0318569_104579012	3300032010	Soil	MALDPAVLKARIDLRVAQLKQLAAWTTVNWRGRAEREQQPRGLPPPPARCNEDDE
Ga0318556_100336064	3300032043	Soil	MTLDPAVLKARIDLRVYQLKWLAAWTVANCRERAEREQLLRGLPPLPA
Ga0318556_102778981	3300032043	Soil	KVRIDLRVCELKALAAWTALNWRGHAEQEQPPRGLPPPPARRNEDDE
Ga0318506_100489114	3300032052	Soil	MALDPAVLKARIDLRIYQLKLLAAWTVASCRGRAEREQLLHGLPLLPAHRDEDDE
Ga0318570_100977593	3300032054	Soil	MALDPAVLKARIDLRVCELKLLAAWVAVNWRGRAEREQQPRGLPPPARRNEDDE
Ga0318533_100525795	3300032059	Soil	MALDPAVLKARISLRVCQLKELAAWTAVNWHGRAEREQPPQPPGRRDEDDE
Ga0318513_102721031	3300032065	Soil	LKVRIDLRVCELKALAAWTALNWRGHAEREQPPRGLPPPPARRNEDDE
Ga0318514_102322611	3300032066	Soil	MTLDPAVLKARIDLRVYQLKWLAAWTVANCRERAEREQLLRGLPPLPARRNENDDQVISGRQPSSWPPWSM
Ga0318553_101108212	3300032068	Soil	GMALDPAVLKARIDLRICQLKRLAAWTVANCRGRVEREQLLRGLPPLPVRRDEDDDE
Ga0318525_105219184	3300032089	Soil	MALDPAVLKARIDLRIYQLKLLAAWTVASCRGRAEREQLLHGLPLLPA
Ga0318525_106620302	3300032089	Soil	LDPAVLKARIDLRICQLKRLAAWTVANCRGRVEREQLLRGLPPLPVRRDEDDDE
Ga0318518_101330784	3300032090	Soil	MTLDPAVLKARIDLRVYQLKWLAAWTVANCRERAEREQLLRGLPPLPARRNENDDQV
Ga0318540_103925191	3300032094	Soil	GMALDPAILKARIDSRVYQLKLLAAWTVANCRGRAEREQLLRGLPPLPARRNDDDDEG
Ga0306920_1014939772	3300032261	Soil	MAFDPAVLKVRIDSRVYQLKLLAAWTVTNCRGRAEREQLLRGLPPLPVRRNEDDE
Ga0318519_103543252	3300033290	Soil	MALDPAVLKARIDLRVAQLKQLAAWTTVNWRGRAEREQQPRGLPPP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F089663

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences