Metagenome / Metatranscriptome Family F089771

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F089771
Family Type	Metagenome / Metatranscriptome
Number of Sequences	108
Average Sequence Length	53 residues
Representative Sequence	MMIPGLSHLLKDIKALEDYGRACQSREEERMVRLTREEVDVIESFRRFKAQDYD
Number of Associated Samples	77
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	81.48 %
% of genes near scaffold ends (potentially truncated)	17.59 %
% of genes from short scaffolds (< 2000 bps)	72.22 %
Associated GOLD sequencing projects	71
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.37

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (62.037 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (21.296 % of family members)
Environment Ontology (ENVO)	Unclassified (26.852 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (59.259 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 46.34% β-sheet: 0.00% Coil/Unstructured: 53.66%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.37
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.37
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF00884	Sulfatase	9.26
PF14707	Sulfatase_C	6.48
PF03551	PadR	1.85
PF08751	TrwC	1.85
PF14022	DUF4238	0.93
PF12680	SnoaL_2	0.93
PF04367	DUF502	0.93
PF03729	DUF308	0.93
PF07238	PilZ	0.93
PF13604	AAA_30	0.93
PF12637	TSCPD	0.93
PF08242	Methyltransf_12	0.93
PF12146	Hydrolase_4	0.93
PF05167	DUF711	0.93
PF00248	Aldo_ket_red	0.93
PF12543	DUF3738	0.93
PF02776	TPP_enzyme_N	0.93
PF02517	Rce1-like	0.93
PF00990	GGDEF	0.93
PF00069	Pkinase	0.93
PF00753	Lactamase_B	0.93
PF12710	HAD	0.93
PF00026	Asp	0.93
PF13590	DUF4136	0.93
PF02774	Semialdhyde_dhC	0.93
PF02245	Pur_DNA_glyco	0.93
PF05783	DLIC	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.70
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	1.85
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	1.85
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	1.85
COG0002	N-acetyl-gamma-glutamylphosphate reductase	Amino acid transport and metabolism [E]	0.93
COG0136	Aspartate-semialdehyde dehydrogenase	Amino acid transport and metabolism [E]	0.93
COG1266	Membrane protease YdiL, CAAX protease family	Posttranslational modification, protein turnover, chaperones [O]	0.93
COG2094	3-methyladenine DNA glycosylase Mpg	Replication, recombination and repair [L]	0.93
COG2848	Uncharacterized conserved protein, UPF0210 family	Cell cycle control, cell division, chromosome partitioning [D]	0.93
COG2928	Uncharacterized membrane protein	Function unknown [S]	0.93
COG3247	Acid resistance membrane protein HdeD, DUF308 family	General function prediction only [R]	0.93
COG4449	Predicted protease, Abi (CAAX) family	General function prediction only [R]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	62.04 %
Unclassified	root	N/A	37.96 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	62.04 %
Unclassified	root	N/A	37.96 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	62.04 %
Unclassified	root	N/A	37.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.96 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	20.37 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.96 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	12.04 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	2.78 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.93 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.93 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.96 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	12.04 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.78 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.93 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.93 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.96 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	12.04 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.78 %
unclassified Rhodospirillales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales	0.93 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.93 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.96 %
Granulicella	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella	5.56 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.78 %
Rhodospirillales bacterium URHD0017	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	0.93 %
Occallatibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter	0.93 %
Burkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia	0.93 %
unclassified Acidobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae	0.93 %
Edaphobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	0.93 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.96 %
unclassified Granulicella	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella	4.63 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.78 %
Occallatibacter savannae	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter → Occallatibacter savannae	0.93 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	0.93 %
Edaphobacter lichenicola	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	0.93 %
Granulicella paludicola	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella paludicola	0.93 %
Rhodospirillales bacterium URHD0017	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	0.93 %
Burkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia	0.93 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.96 %
Granulicella sp. L46	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp. L46	4.63 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.78 %
Occallatibacter savannae	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter → Occallatibacter savannae	0.93 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	0.93 %
Edaphobacter lichenicola	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	0.93 %
Granulicella paludicola	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella paludicola	0.93 %
Rhodospirillales bacterium URHD0017	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	0.93 %
Burkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia	0.93 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003352\|JGI26345J50200_1001459	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2123	Open in IMG/M
3300003370\|JGI26337J50220_1007156	All Organisms → cellular organisms → Bacteria	1319	Open in IMG/M
3300004080\|Ga0062385_10385838	All Organisms → cellular organisms → Bacteria	833	Open in IMG/M
3300004080\|Ga0062385_10548171	Not Available	722	Open in IMG/M
3300004080\|Ga0062385_10998715	Not Available	561	Open in IMG/M
3300004080\|Ga0062385_11035719	Not Available	553	Open in IMG/M
3300004082\|Ga0062384_100763394	Not Available	672	Open in IMG/M
3300004091\|Ga0062387_100553391	Not Available	815	Open in IMG/M
3300004091\|Ga0062387_100595340	Not Available	791	Open in IMG/M
3300004092\|Ga0062389_100323309	Not Available	1623	Open in IMG/M
3300004092\|Ga0062389_100684849	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1197	Open in IMG/M
3300004092\|Ga0062389_101755671	Not Available	801	Open in IMG/M
3300004092\|Ga0062389_103675369	Not Available	576	Open in IMG/M
3300004092\|Ga0062389_104614517	Not Available	518	Open in IMG/M
3300004635\|Ga0062388_101327150	Not Available	719	Open in IMG/M
3300005327\|Ga0070658_11498888	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp. L46	585	Open in IMG/M
3300005436\|Ga0070713_102177952	Not Available	537	Open in IMG/M
3300005437\|Ga0070710_10560350	Not Available	790	Open in IMG/M
3300005456\|Ga0070678_100007837	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	6355	Open in IMG/M
3300005533\|Ga0070734_10022704	All Organisms → cellular organisms → Bacteria	4107	Open in IMG/M
3300005533\|Ga0070734_10125269	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter → Occallatibacter savannae	1500	Open in IMG/M
3300005712\|Ga0070764_10303926	Not Available	922	Open in IMG/M
3300006162\|Ga0075030_100258957	All Organisms → cellular organisms → Bacteria	1394	Open in IMG/M
3300009101\|Ga0105247_10190735	All Organisms → cellular organisms → Bacteria → Acidobacteria	1372	Open in IMG/M
3300009623\|Ga0116133_1153504	Not Available	604	Open in IMG/M
3300010339\|Ga0074046_10368162	Not Available	872	Open in IMG/M
3300010343\|Ga0074044_10033373	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3607	Open in IMG/M
3300010397\|Ga0134124_11115919	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp. L46	806	Open in IMG/M
3300011120\|Ga0150983_14145030	Not Available	582	Open in IMG/M
3300012212\|Ga0150985_115776471	All Organisms → cellular organisms → Bacteria	931	Open in IMG/M
3300012469\|Ga0150984_105837633	Not Available	1755	Open in IMG/M
3300012957\|Ga0164303_11249300	Not Available	546	Open in IMG/M
3300012960\|Ga0164301_10230601	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	1202	Open in IMG/M
3300012987\|Ga0164307_10892384	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp. L46	715	Open in IMG/M
3300013296\|Ga0157374_10553712	All Organisms → cellular organisms → Bacteria	1158	Open in IMG/M
3300014164\|Ga0181532_10036980	All Organisms → cellular organisms → Bacteria	3327	Open in IMG/M
3300014164\|Ga0181532_10058270	All Organisms → cellular organisms → Bacteria	2521	Open in IMG/M
3300014201\|Ga0181537_10626886	All Organisms → cellular organisms → Bacteria	733	Open in IMG/M
3300014969\|Ga0157376_10367855	All Organisms → cellular organisms → Bacteria	1381	Open in IMG/M
3300014969\|Ga0157376_11736525	All Organisms → cellular organisms → Bacteria	660	Open in IMG/M
3300016750\|Ga0181505_10647840	Not Available	676	Open in IMG/M
3300017970\|Ga0187783_10529234	All Organisms → cellular organisms → Bacteria	854	Open in IMG/M
3300017970\|Ga0187783_10867064	Not Available	651	Open in IMG/M
3300018034\|Ga0187863_10222705	Not Available	1049	Open in IMG/M
3300018042\|Ga0187871_10017355	All Organisms → cellular organisms → Bacteria	4723	Open in IMG/M
3300020078\|Ga0206352_10717545	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp. L46	549	Open in IMG/M
3300020583\|Ga0210401_11013917	All Organisms → cellular organisms → Bacteria	689	Open in IMG/M
3300021171\|Ga0210405_10009913	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	8124	Open in IMG/M
3300021181\|Ga0210388_10095795	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	2537	Open in IMG/M
3300021181\|Ga0210388_10127011	All Organisms → cellular organisms → Bacteria → Acidobacteria	2202	Open in IMG/M
3300021181\|Ga0210388_10191459	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella paludicola	1788	Open in IMG/M
3300021181\|Ga0210388_11085987	Not Available	683	Open in IMG/M
3300021181\|Ga0210388_11149484	Not Available	660	Open in IMG/M
3300021181\|Ga0210388_11220357	Not Available	637	Open in IMG/M
3300021401\|Ga0210393_11042963	Not Available	661	Open in IMG/M
3300021401\|Ga0210393_11663681	Not Available	505	Open in IMG/M
3300021402\|Ga0210385_11395348	Not Available	536	Open in IMG/M
3300021403\|Ga0210397_10019843	All Organisms → cellular organisms → Bacteria	4120	Open in IMG/M
3300021403\|Ga0210397_10232439	All Organisms → cellular organisms → Bacteria	1331	Open in IMG/M
3300021403\|Ga0210397_10616940	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	830	Open in IMG/M
3300021405\|Ga0210387_10915116	All Organisms → cellular organisms → Bacteria	771	Open in IMG/M
3300021406\|Ga0210386_10610816	All Organisms → cellular organisms → Bacteria	942	Open in IMG/M
3300021475\|Ga0210392_10854284	All Organisms → cellular organisms → Bacteria	680	Open in IMG/M
3300022511\|Ga0242651_1036932	All Organisms → cellular organisms → Bacteria	568	Open in IMG/M
3300022523\|Ga0242663_1089474	All Organisms → cellular organisms → Bacteria	600	Open in IMG/M
3300022523\|Ga0242663_1125700	Not Available	533	Open in IMG/M
3300022528\|Ga0242669_1132901	Not Available	509	Open in IMG/M
3300022530\|Ga0242658_1206903	Not Available	536	Open in IMG/M
3300022711\|Ga0242674_1074253	All Organisms → cellular organisms → Bacteria	503	Open in IMG/M
3300024220\|Ga0224568_1020573	Not Available	666	Open in IMG/M
3300024225\|Ga0224572_1000803	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4162	Open in IMG/M
3300025315\|Ga0207697_10034363	All Organisms → cellular organisms → Bacteria	2076	Open in IMG/M
3300025938\|Ga0207704_11501345	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp. L46	578	Open in IMG/M
3300027698\|Ga0209446_1040609	All Organisms → cellular organisms → Bacteria	1172	Open in IMG/M
3300027701\|Ga0209447_10007025	All Organisms → cellular organisms → Bacteria	3323	Open in IMG/M
3300027729\|Ga0209248_10066545	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1097	Open in IMG/M
3300027737\|Ga0209038_10003463	All Organisms → cellular organisms → Bacteria	4666	Open in IMG/M
3300027768\|Ga0209772_10208628	All Organisms → cellular organisms → Bacteria	619	Open in IMG/M
3300027783\|Ga0209448_10015766	All Organisms → cellular organisms → Bacteria → Acidobacteria	2459	Open in IMG/M
3300027812\|Ga0209656_10336010	Not Available	690	Open in IMG/M
3300027817\|Ga0209112_10241519	All Organisms → cellular organisms → Bacteria	630	Open in IMG/M
3300027826\|Ga0209060_10087631	All Organisms → cellular organisms → Bacteria	1462	Open in IMG/M
3300027826\|Ga0209060_10203365	All Organisms → cellular organisms → Bacteria	912	Open in IMG/M
3300027908\|Ga0209006_11286756	Not Available	566	Open in IMG/M
3300031057\|Ga0170834_110214062	Not Available	601	Open in IMG/M
3300031708\|Ga0310686_116223793	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia	3005	Open in IMG/M
3300032174\|Ga0307470_10867370	All Organisms → cellular organisms → Bacteria	706	Open in IMG/M
3300032770\|Ga0335085_10015293	All Organisms → cellular organisms → Bacteria	11138	Open in IMG/M
3300032770\|Ga0335085_10152822	All Organisms → cellular organisms → Bacteria → Acidobacteria	2893	Open in IMG/M
3300032770\|Ga0335085_10181058	Not Available	2603	Open in IMG/M
3300032770\|Ga0335085_10256324	All Organisms → cellular organisms → Bacteria	2099	Open in IMG/M
3300032783\|Ga0335079_10113745	Not Available	3059	Open in IMG/M
3300032783\|Ga0335079_10378345	All Organisms → cellular organisms → Bacteria	1530	Open in IMG/M
3300032783\|Ga0335079_11870772	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	582	Open in IMG/M
3300032805\|Ga0335078_10071311	All Organisms → cellular organisms → Bacteria → Acidobacteria	5076	Open in IMG/M
3300032805\|Ga0335078_10106058	All Organisms → cellular organisms → Bacteria	4048	Open in IMG/M
3300032805\|Ga0335078_10733584	All Organisms → cellular organisms → Bacteria	1217	Open in IMG/M
3300032805\|Ga0335078_11422932	All Organisms → cellular organisms → Bacteria	781	Open in IMG/M
3300032828\|Ga0335080_10236056	Not Available	2001	Open in IMG/M
3300032829\|Ga0335070_10329907	All Organisms → cellular organisms → Bacteria	1472	Open in IMG/M
3300032829\|Ga0335070_10874249	All Organisms → cellular organisms → Bacteria	833	Open in IMG/M
3300032892\|Ga0335081_10095761	Not Available	4433	Open in IMG/M
3300032893\|Ga0335069_10096007	All Organisms → cellular organisms → Bacteria	3755	Open in IMG/M
3300032896\|Ga0335075_10858530	Not Available	839	Open in IMG/M
3300032898\|Ga0335072_10000732	All Organisms → cellular organisms → Bacteria	59240	Open in IMG/M
3300032954\|Ga0335083_10095159	All Organisms → cellular organisms → Bacteria → Proteobacteria	2953	Open in IMG/M
3300032955\|Ga0335076_10551641	Not Available	1035	Open in IMG/M
3300033158\|Ga0335077_10221242	All Organisms → cellular organisms → Bacteria → Acidobacteria	2114	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	89.81%
Host-Associated	Host-Associated	10.19%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	62.04%
Aquatic	Environmental → Aquatic	27.78%
Plants	Host-Associated → Plants	10.19%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	61.11%
Freshwater	Environmental → Aquatic → Freshwater	26.85%
Rhizosphere	Host-Associated → Plants → Rhizosphere	6.48%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.70%
Sediment	Environmental → Aquatic → Sediment	0.93%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	32.41%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	26.85%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	23.15%
Loam	Environmental → Terrestrial → Soil → Loam	5.56%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.63%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.85%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.93%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.93%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.93%

Habitat	Taxonomy	Distribution
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	25.93%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	23.15%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	23.15%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	9.26%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.63%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.70%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.85%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.93%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.93%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	21.30%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	20.37%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	19.44%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.70%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	3.70%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	2.78%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	2.78%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.78%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.78%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.85%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	1.85%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.85%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.93%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.93%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.93%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.93%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.93%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.93%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.93%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.93%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.93%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003352	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1	Environmental	Open in IMG/M
3300003370	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005533	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009623	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_10	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300014164	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG	Environmental	Open in IMG/M
3300014201	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG	Environmental	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300016750	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental	Open in IMG/M
3300020078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-5 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300022511	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-28-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022523	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022528	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022530	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022711	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024220	Spruce litter microbial communities from Bohemian Forest, Czech Republic ? CLU5	Environmental	Open in IMG/M
3300024225	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZU5	Host-Associated	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027698	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027701	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027729	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027737	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027768	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027783	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027817	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_O3 (SPAdes)	Environmental	Open in IMG/M
3300027826	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300032896	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI26345J50200_10014592	3300003352	Bog Forest Soil	MMIPGLSQLAKDLKAVEDHARACQSGDEERIVRLTREEVDVIESFRRFKAQD
JGI26337J50220_10071562	3300003370	Bog Forest Soil	MMIPGLSQLAKDLKAVEDHARACQSGDEERIVRLTREEVDVIESFRRFKAQDYN*
Ga0062385_103858382	3300004080	Bog Forest Soil	MMIPGLSHLLKDVKTLEEHARACQSADEKRMVLLTREEVDVIESFRRFKAQDYD*
Ga0062385_105481712	3300004080	Bog Forest Soil	MMIPGLALLLKDIKTLEEHARACQSREEERMVRLTREEVDVIESFRRFKAQDYD*
Ga0062385_109987151	3300004080	Bog Forest Soil	MMIPGMSQLFEDIKALEEYARANRLREEARMVLVTAEEADVIDSFRRFKAQEY*
Ga0062385_110357191	3300004080	Bog Forest Soil	MMIPGLSQLAKDLKTIEDLARACQSREEERMVRLTREEADVIESFRRFKAQDYD*
Ga0062384_1007633942	3300004082	Bog Forest Soil	MMIPGLSHLLKDIKTLEEHARACQSGDEERMLLLTREEVDVIKSFRRFKAQDYD*
Ga0062387_1005533912	3300004091	Bog Forest Soil	MTIPGLSQLAKDIKAIEDHARACQSREEERMMRLTREEVDVIESFRRFKAQDHD*
Ga0062387_1005953402	3300004091	Bog Forest Soil	MMIPGMAQLLEDKKVLEDLARADRSREELRMVLVTREEAD
Ga0062389_1003233093	3300004092	Bog Forest Soil	MMIPGMSELFEDIKTLEDYARAFRSKEELKMVLVTREEADVIDSFRRFKTQEY*
Ga0062389_1006848492	3300004092	Bog Forest Soil	MIIPGMSQLVEDIKALEDYARACRLRDELRMVLVTAEEADVIDSYRRFMAQEY*
Ga0062389_1017556711	3300004092	Bog Forest Soil	MMIPGMAQLLEDKKVLEDLARADRSREELRMVLVTREEADVIES
Ga0062389_1036753691	3300004092	Bog Forest Soil	MMIPGMSQLYKDIKALEDYARASQLREEVRMVLVTQEEADMIESFRRFNAQGYE*
Ga0062389_1046145171	3300004092	Bog Forest Soil	MMPGVSELLEDIKKLQDYARACRSRGELRMVLVTAEEADVIDSFRRFKAEEY*
Ga0062388_1013271501	3300004635	Bog Forest Soil	MTIPGLSQLAKDIKAIEDHARACQSREEERMMRLTREEVDVIESFRRF
Ga0070658_114988881	3300005327	Corn Rhizosphere	MVSAVQDLLKDIKILEDYARACQSGEELRIVPLTREEVDVIASFRRFMDQEID*
Ga0070713_1021779521	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MPIMTLLLRDIKTLEDYARALQSTEEERMMLVTREEADVLESFRRFKTQEYD*
Ga0070710_105603502	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	LIMPIMTLLLRDIKTLEDYARALQSTEEERMMLVTREEADVLESFRRFKTQEYD*
Ga0070678_1000078372	3300005456	Miscanthus Rhizosphere	MVSAVQDLLKDIKILEDYARACQSGEELRIVPLTREEVDVIASFRRFMDQKID*
Ga0070734_100227046	3300005533	Surface Soil	VMIPGMAHLLKDIKAVEDYARACQSREEMRMVLVTREEADVIDSFRRFKNQEE*
Ga0070734_101252692	3300005533	Surface Soil	MTIPGMSELLRDIKTLEDYARAGRSRGEEQMVLLTREEVEVIESFRRFKAQDYD*
Ga0070764_103039262	3300005712	Soil	VTIPGLSDLLKDIKTLEDHARAHHSREETRMVPLTREEADVVESYRRFLAQDYD*
Ga0075030_1002589572	3300006162	Watersheds	MTIPGLSQLAKDVKTIEEHARACQSGEAERIVLLTREEVEVIESFRRFKAQDYD*
Ga0105247_101907351	3300009101	Switchgrass Rhizosphere	MTLLLKDIKTLEDYARACWSKDEERMVLVTREEADVLESFRRFKNQESY*
Ga0116133_11535041	3300009623	Peatland	MFPGMSELLRDIKVLEGYAQACRVGEDTRMVLVTREEADVIESFRRFKAQDYD*
Ga0074046_103681622	3300010339	Bog Forest Soil	MQHLLKEIKVLEDYARACQSGEETRMVRLTREEADVIESFRRFKAEEY*
Ga0074044_100333732	3300010343	Bog Forest Soil	MVIPGLLQLVKDLKAIEEHAQACRSGEEERMVRLTREEVDVIESFRRFKAQDYD*
Ga0134124_111159192	3300010397	Terrestrial Soil	MVSAVQDLLKDIKILEDYARACQSGEELRIVPLTREEVDVIASFRRFMNQEID*
Ga0150983_141450302	3300011120	Forest Soil	MNKENCLTIPGLQNLYKEIKTLEDYARAHHSRDELEMVLVTREEAEVLDSFRRFKIEDYE
Ga0150985_1157764711	3300012212	Avena Fatua Rhizosphere	MTFLQNDIKVIEDHARACQSSEEERMVLITREEADVIESFRRFKAEEND*
Ga0150984_1058376331	3300012469	Avena Fatua Rhizosphere	MTFLQNDIKVIEDHARACQSSEEERMVLITREEADVLESFRRFKAEEND*
Ga0164303_112493001	3300012957	Soil	MTLLLKDIKTLEDYARACRSKDEERMVLVTREEADVLESFRRFKNQESY*
Ga0164301_102306011	3300012960	Soil	MVPAMRDLLKDIKILEDYARACQSGEELRIVPLTREEVEVIASFRRFMNDEID*
Ga0164307_108923841	3300012987	Soil	MVPAMRDLLKDIKILEDYARACQSGDELRIVPLTREEVEVIASFRRFMNDEID*
Ga0157374_105537122	3300013296	Miscanthus Rhizosphere	MTLLLKDIKTLEDYARACRSKDEERMVLVTREEADVLESFRRFKNQEGY*
Ga0181532_100369802	3300014164	Bog	MIPGMSNLLKDIKVLEDYGRACQLREEVRMVLLTREEEDVIESFRRFRAQEYD*
Ga0181532_100582702	3300014164	Bog	MMVPGMPHLLKDIRVVEDYARACQSGEETRMVPLTREEADVLESFRRFKAQEYD*
Ga0181537_106268862	3300014201	Bog	MIPGMPDLFKAIKAVEDHARACQSSEEQRMVLLTREEVDVIKSFRRFKAQEHD*
Ga0157376_103678552	3300014969	Miscanthus Rhizosphere	MMIPGLPELFKTIKTVEDHARACHSREEEERMVLLTREEADVIESFRRFKAQEYD*
Ga0157376_117365251	3300014969	Miscanthus Rhizosphere	AERGNHLTIPGMTLLLKDIKTLEDYARACRSKDEERMVLVTREEADVLESFRRFKNQESY
Ga0181505_106478401	3300016750	Peatland	MIPGMSNLLKDIKVLEDYGRACQLREEVRMVLLTREEEDVIESFRRFRAQEYD
Ga0187783_105292341	3300017970	Tropical Peatland	MMIPGLSQLAKDIKAVEDYARACHSTEEERMVLLTREEVEVIESFRRFKVQDYD
Ga0187783_108670642	3300017970	Tropical Peatland	MTIPGLSELAKDLKTIEDHARACHSREGERMVLLTREEFEVIESFRRFKAQDDD
Ga0187863_102227052	3300018034	Peatland	MMPGLSQLYEDIKTLEDYARACRSKEELQMVLITREEADVIDSFRRFMAKEY
Ga0187871_100173552	3300018042	Peatland	MMFPGMSELLRDIKVLEGYAQACRVGEDTRMVLVTREEADVIESFRRFKAQDYD
Ga0206352_107175452	3300020078	Corn, Switchgrass And Miscanthus Rhizosphere	MVSAVQDLLKDIKILEDYARACQSGEELRIVPLTREEVDVIASFRRFMDQEID
Ga0210401_110139172	3300020583	Soil	MIPGMPDLFKAIKAVEDHARACQSSEEERMVLLTREEADVIESFRRFKTQEHD
Ga0210405_100099136	3300021171	Soil	MMFPGISELLKDIKVLEDYGRACQPGEDARMVLVTPEEADVVESYRRFMAQDYD
Ga0210388_100957952	3300021181	Soil	MMPGISELLEDIKALEDYARACRSRGELRMVLVTAEEVDVIDSFRRFKAQEY
Ga0210388_101270111	3300021181	Soil	MQDLFKEIKALEDYARACQSGDELQMVLVTREEADVIESFRRFKIEGYE
Ga0210388_101914592	3300021181	Soil	VTIPGLNDLLRDIKALEDHAKAHHSRQETRMVPLTREEIDVIESFRRFKQDYE
Ga0210388_110859871	3300021181	Soil	MQHLFKEIKALEDYARACQSGDELHMVLVTQEEADVLESFRRFKSQDYD
Ga0210388_111494841	3300021181	Soil	MMPGISELLEDIKALEDYARACRSRGELRMVLVTAEEV
Ga0210388_112203571	3300021181	Soil	VTIPGLSDLLKDIKTLEDHARAHHSREETRMVPLTREEADVVESYRRFLAQDYD
Ga0210393_110429632	3300021401	Soil	MTIPGMSQLLENVKELEDYARACRSEGELRMVLITAEEADVIDSFRRFMTQEY
Ga0210393_116636812	3300021401	Soil	MMIPGTSQLRDAIKELEDYARSDRSRGELQMVLVTAEEADVIESFRRFKTEGY
Ga0210385_113953481	3300021402	Soil	MIPGISELLEDVKALEDWARACRSKGELRMILVTAEEVEVLDSFRRFKAGEY
Ga0210397_100198432	3300021403	Soil	MMIPGMSQLAKEIKTLEDHARACQSGEEGQMVLLTREEADVVESYRRFKAQDYD
Ga0210397_102324392	3300021403	Soil	MIPGMAHLLKDIKAVEDYARACQSREELRMVLVTREEADVIDSFRRFKDQDLE
Ga0210397_106169402	3300021403	Soil	LVKEIKTLEDHARAYRSGDELKMVFVTREEADVLDSFRRFKFQDYD
Ga0210387_109151162	3300021405	Soil	MPGLNDLLRDIKTLEDYAKANRSREEMRMVPLTREEVDVIESFRRFMAQDYS
Ga0210386_106108162	3300021406	Soil	MMFPGISELLKDIKVLEDYARACQPGEDARMVLVTREEADVVESYRRFMAQDYD
Ga0210392_108542842	3300021475	Soil	MIPGMAHLLKDIKAVEDYARACQSREELRMVLVTREEADVIDSFRRFKDQEYE
Ga0242651_10369321	3300022511	Soil	MAHLLKDIKAVEDYARACQSREELRMVLVTREEADVIDSFRRFKDQELE
Ga0242663_10894741	3300022523	Soil	PGMPDLFKAIKAVEDHARACQSSEEERMVLLTREEADVIESFRRFKTQEHD
Ga0242663_11257002	3300022523	Soil	VAQLYEEVKALEDYIRACQSDGEVRLVFVTREEADVIESFRRFKAQEY
Ga0242669_11329011	3300022528	Soil	KIRMIPGVAQLYEEVKALEDYIRACQSDGEVRLVFVTREEADVIESFRRFKAQEY
Ga0242658_12069032	3300022530	Soil	MLPGMSDLIEYVKALEDYARACRSQGELRMVLITAEEADVIDSFRRFKANEF
Ga0242674_10742531	3300022711	Soil	GIPRLLEDLKALEDHARAFRSRGELRMVLVTEEEADVVDSFRRFMAQEY
Ga0224568_10205732	3300024220	Plant Litter	METEKETNRLMIPGMSQLRDAIKELENFARASRSRQELRMVLVTAEEADVLDSYRQFLAQEY
Ga0224572_10008037	3300024225	Rhizosphere	MILPGMPDLLKDIKVLEDYGRACRLREEARMVLLTREEEDVIESFRRFKSEEYD
Ga0207697_100343633	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	MVSAVQDLLKDIKILEDYARACQSGEELRIVPLTREEVDVIASFRRFMDQKID
Ga0207704_115013452	3300025938	Miscanthus Rhizosphere	MVSAVQDLLKDIKILEDYARACQSGEELRIVPLTREEVDVIASFRRFMDQDID
Ga0209446_10406092	3300027698	Bog Forest Soil	MVIPGLLQLVKDLKAIEDHARACQSREEERMVRLTREEADVIESFRRFKAQDYD
Ga0209447_100070252	3300027701	Bog Forest Soil	MMIPGLSQLAKDLKAVEDHARACQSGDEERIVRLTREEVDVIESFRRFKAQDYD
Ga0209248_100665453	3300027729	Bog Forest Soil	MVIPGLLQLVKDLKAIEEHAQACRSGEEERMVRLTREEVDVIESFRRFKAQDYD
Ga0209038_100034631	3300027737	Bog Forest Soil	MMIPGLSQLAKDLKAVEDHARACQSGDEERIVRLTREEVDVIESFRRFKAQDYN
Ga0209772_102086281	3300027768	Bog Forest Soil	GGGPGKENDRMMIPGLSHLLKDIKTLEEHARACQSGDEERMLLLTREEVDVIKSFRRFKAQDYD
Ga0209448_100157662	3300027783	Bog Forest Soil	MMIPGLSHLLKDIKALEDYGRACQSREEERMVRLTREEVDVIESFRRFKAQDYD
Ga0209656_103360101	3300027812	Bog Forest Soil	MIPGMPDLFKAIKAVEDHARACQSREEERMVLLTREEADVIESFREFRGQGAFGNR
Ga0209112_102415192	3300027817	Forest Soil	IVKIPGMAHLLKDIKAVEDYARACQSREELRMVLVTREEADVIDSFRRFKDQE
Ga0209060_100876313	3300027826	Surface Soil	MIPGMAHLLKDIKAVEDYARACQSREEMRMVLVTREEADVIDSFRRF
Ga0209060_102033651	3300027826	Surface Soil	MTIPGMSELLRDIKTLEDYARAGRSRGEEQMVLLTREEVEVIESFRRFKAQDYD
Ga0209006_112867561	3300027908	Forest Soil	MMIPGTSQLRDAIKELEDYARSDRSRGELQMVLVTAEEADVIESFRRF
Ga0170834_1102140621	3300031057	Forest Soil	MIPIMTLLLKDIKTLEDYARACLSKEEERMVLVTREEADVLESFRRFKNQESY
Ga0310686_1162237933	3300031708	Soil	MQDLLKEITALEDYARACRSRDELQMVIVTREEADVIESFRRFKIEDYG
Ga0307470_108673702	3300032174	Hardwood Forest Soil	PGISELLRDIRVLEDYARACQPGEDARMVLVTREEADVIESFRRFMAQDYD
Ga0335085_100152932	3300032770	Soil	MIPGMPQLRKDIKVIENYARACQSSEEIRMMLLTQEEAEVIESFRRFKAEGYD
Ga0335085_101528222	3300032770	Soil	MMIPGMPQLRKDIKVIEHYARACQSTEEIRMMLLTQEEADVIESFRRFKAEGYD
Ga0335085_101810581	3300032770	Soil	MMIPGLTQLAKEIKAIEDHARACQSGEDDRMVRLTREEVDVVESFRRFKAKDYD
Ga0335085_102563242	3300032770	Soil	MLIPGMPQLRKDIKNIEDYARACQSTEEIRTMLLTREEAEVIDSFRRFKAEGCD
Ga0335079_101137453	3300032783	Soil	MMIPGMPQLRKDIKVIEDYARACQSTEEMGMMLLTQEEADVIESFRRFKAEGHD
Ga0335079_103783452	3300032783	Soil	MMIPGMPQLRKDIKVIEDHARACQSTEEIGMMLLTQEEADVIESFRRFKAEGHD
Ga0335079_118707722	3300032783	Soil	MMIPGMPQLRKDIKIVEDYARSCQSTEEIRMMLLTQEETDVIESFRRFKAGDHD
Ga0335078_100713116	3300032805	Soil	MMIPGLSQLAKDLKAVEDHARACQSREEEQMVLLTREEVEVIESFRRFKAQDYD
Ga0335078_101060584	3300032805	Soil	MMIPGMPQLRKDIKVIEDYARACQSTEEIRMVLLTREEEEVLESYRRFKGHDDD
Ga0335078_107335842	3300032805	Soil	MMIPGMPQLRKDIKIMEDYARACQSTEEIGMMLLTQEEADVIESFRRFKAEGHD
Ga0335078_114229321	3300032805	Soil	MMIPGMPQLRKDIKTIEDYARSCQSTEEIGMMLLTQEEADVIESFRRFKAEGHD
Ga0335080_102360562	3300032828	Soil	ENNPMIIPGLSQLAKDLKAVEDHARACQSREEEQMVLLTREEVEVIESFRRFKAQDYD
Ga0335070_103299071	3300032829	Soil	FRKDVKTIEDYARACQSTEEIGMMLLTQEEAEVVESFRRFKAEGHD
Ga0335070_108742491	3300032829	Soil	MMIPGMPQFRKDVKTIEDYALACQSTEEIRTMLVTQEEADVIESFRRFKAEGCD
Ga0335081_100957613	3300032892	Soil	MPLIRGTIGMMIPGMPQFRKDIKTIEDYARSCQSTEEIGMMLLTQEEADVIESFRRFKAEGHD
Ga0335069_100960073	3300032893	Soil	MMIPGMPQFRKDVKTIEDYARACQSTEEIGMMLLTQEEAEVVESFRRFKAEGHD
Ga0335075_108585301	3300032896	Soil	VTIPGLNELLRDIKTLEDHAKERRSPEETRVVLLTREEADVVESYRRFKTQDYD
Ga0335072_1000073252	3300032898	Soil	MMIPGMPQLRKDIKIIEDYARACQSTEEIGMMLLTQEEADVIESFRRFKAEGHD
Ga0335083_100951591	3300032954	Soil	MGLIIPGMPQLRKDIKVIEDYARACQSTEEIRTMLLTREEADVIESFRRFKAEDSD
Ga0335076_105516412	3300032955	Soil	MMIPGMPQLRKDIKIMEDYARACQSTEEIGMMLLTQEEADVIESFRRFKAE
Ga0335077_102212423	3300033158	Soil	MIIPGLSQLAKDLKAVEDHARACQSREEEQMVLLTREEVEVIESFRRFKAQDYD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F089771

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences