Metagenome / Metatranscriptome Family F089779

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F089779
Family Type	Metagenome / Metatranscriptome
Number of Sequences	108
Average Sequence Length	69 residues
Representative Sequence	VDNELEVIRDEMEQTRANLADKLGALETQVRETVSGATEAVSSTVEGVKDVVSSVSETVESVTETFNVSKQVE
Number of Associated Samples	66
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	93.52 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	100.00 %
Associated GOLD sequencing projects	64
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.58

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (51.852 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (29.630 % of family members)
Environment Ontology (ENVO)	Unclassified (29.630 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (32.407 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 70.30% β-sheet: 0.00% Coil/Unstructured: 29.70%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.58
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.58
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF07332	Phage_holin_3_6	100.00

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	52.78 %
Unclassified	root	N/A	47.22 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	51.85 %
Unclassified	root	N/A	47.22 %
Viruses	superkingdom	All Organisms → Viruses	0.93 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	51.85 %
Unclassified	root	N/A	47.22 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.22 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	34.26 %
unclassified Bacteria	no rank	All Organisms → cellular organisms → Bacteria → unclassified Bacteria	0.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.22 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	34.26 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.22 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	34.26 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.22 %
Planctomycetales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales	22.22 %
Gemmatales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales	1.85 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.22 %
Planctomycetaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae	11.11 %
unclassified Planctomycetales	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → unclassified Planctomycetales	3.70 %
Gemmataceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae	1.85 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.22 %
Schlesneria	genus	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Schlesneria	9.26 %
Planctomycetales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → unclassified Planctomycetales → Planctomycetales bacterium	3.70 %
Gemmata	genus	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Gemmata	1.85 %
unclassified Planctomycetaceae	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae	1.85 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.22 %
Schlesneria paludicola	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Schlesneria → Schlesneria paludicola	9.26 %
Planctomycetales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → unclassified Planctomycetales → Planctomycetales bacterium	3.70 %
Planctomycetaceae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	0.93 %
Planctomycetaceae bacterium SCGC AG-212-F19	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium SCGC AG-212-F19	0.93 %
Gemmata massiliana	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Gemmata → Gemmata massiliana	0.93 %
Gemmata obscuriglobus	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Gemmata → Gemmata obscuriglobus	0.93 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003162\|Ga0006778J45830_1072140	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Gemmata → Gemmata obscuriglobus	553	Open in IMG/M
3300003577\|Ga0007416J51690_1089604	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	585	Open in IMG/M
3300003579\|Ga0007429J51699_1048813	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	1082	Open in IMG/M
3300003579\|Ga0007429J51699_1054455	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	1107	Open in IMG/M
3300003579\|Ga0007429J51699_1101376	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	909	Open in IMG/M
3300003693\|Ga0032354_1108378	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	722	Open in IMG/M
3300003735\|Ga0006780_1019438	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	917	Open in IMG/M
3300003735\|Ga0006780_1032795	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Schlesneria → Schlesneria paludicola	751	Open in IMG/M
3300003735\|Ga0006780_1051757	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	847	Open in IMG/M
3300004798\|Ga0058859_11774105	Not Available	677	Open in IMG/M
3300004800\|Ga0058861_11981574	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Schlesneria → Schlesneria paludicola	855	Open in IMG/M
3300004801\|Ga0058860_11981354	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	858	Open in IMG/M
3300005764\|Ga0066903_101776371	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	1177	Open in IMG/M
3300005764\|Ga0066903_105240431	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Schlesneria → Schlesneria paludicola	686	Open in IMG/M
3300005764\|Ga0066903_106132137	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Gemmata → Gemmata massiliana	629	Open in IMG/M
3300009083\|Ga0105047_10802979	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	801	Open in IMG/M
3300010071\|Ga0127477_145555	Not Available	527	Open in IMG/M
3300010100\|Ga0127440_1064636	Not Available	532	Open in IMG/M
3300010101\|Ga0127481_1017992	Not Available	600	Open in IMG/M
3300010109\|Ga0127497_1012523	Not Available	609	Open in IMG/M
3300010132\|Ga0127455_1163536	Not Available	528	Open in IMG/M
3300010133\|Ga0127459_1013992	Not Available	556	Open in IMG/M
3300010136\|Ga0127447_1038093	Not Available	522	Open in IMG/M
3300010143\|Ga0126322_1105083	All Organisms → cellular organisms → Bacteria	774	Open in IMG/M
3300010145\|Ga0126321_1411216	Not Available	509	Open in IMG/M
3300010147\|Ga0126319_1030100	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	1076	Open in IMG/M
3300010154\|Ga0127503_10475482	Not Available	756	Open in IMG/M
3300010865\|Ga0126346_1123856	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales	1067	Open in IMG/M
3300010878\|Ga0136899_10062361	All Organisms → Viruses → Predicted Viral	1062	Open in IMG/M
3300011120\|Ga0150983_15988022	Not Available	557	Open in IMG/M
3300011332\|Ga0126317_10342067	Not Available	507	Open in IMG/M
3300011333\|Ga0127502_10041821	Not Available	1088	Open in IMG/M
3300011333\|Ga0127502_10610952	Not Available	509	Open in IMG/M
3300011333\|Ga0127502_10872786	Not Available	611	Open in IMG/M
3300012212\|Ga0150985_101079697	All Organisms → cellular organisms → Bacteria	852	Open in IMG/M
3300012212\|Ga0150985_103148084	All Organisms → cellular organisms → Bacteria	960	Open in IMG/M
3300012212\|Ga0150985_103753681	Not Available	1206	Open in IMG/M
3300012212\|Ga0150985_108573387	Not Available	630	Open in IMG/M
3300012212\|Ga0150985_111639623	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → unclassified Planctomycetales → Planctomycetales bacterium	1190	Open in IMG/M
3300012212\|Ga0150985_112174093	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Schlesneria → Schlesneria paludicola	1151	Open in IMG/M
3300012212\|Ga0150985_113029541	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales	1152	Open in IMG/M
3300012371\|Ga0134022_1071329	Not Available	558	Open in IMG/M
3300012380\|Ga0134047_1056417	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium SCGC AG-212-F19	859	Open in IMG/M
3300012380\|Ga0134047_1079424	Not Available	770	Open in IMG/M
3300012393\|Ga0134052_1031726	Not Available	942	Open in IMG/M
3300012407\|Ga0134050_1209066	Not Available	853	Open in IMG/M
3300012469\|Ga0150984_103622327	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → unclassified Planctomycetales → Planctomycetales bacterium	1204	Open in IMG/M
3300012469\|Ga0150984_105381797	All Organisms → cellular organisms → Bacteria	517	Open in IMG/M
3300012469\|Ga0150984_110425526	Not Available	1136	Open in IMG/M
3300012469\|Ga0150984_116534066	All Organisms → cellular organisms → Bacteria	1016	Open in IMG/M
3300012469\|Ga0150984_119332488	Not Available	594	Open in IMG/M
3300018468\|Ga0066662_12570799	Not Available	537	Open in IMG/M
3300019233\|Ga0184645_1150560	Not Available	701	Open in IMG/M
3300019233\|Ga0184645_1161150	All Organisms → cellular organisms → Bacteria	923	Open in IMG/M
3300019254\|Ga0184641_1176118	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales	789	Open in IMG/M
3300019254\|Ga0184641_1402895	Not Available	622	Open in IMG/M
3300019254\|Ga0184641_1457552	Not Available	547	Open in IMG/M
3300019259\|Ga0184646_1456248	Not Available	594	Open in IMG/M
3300020069\|Ga0197907_10589446	Not Available	637	Open in IMG/M
3300020069\|Ga0197907_11417970	All Organisms → cellular organisms → Bacteria	1188	Open in IMG/M
3300020075\|Ga0206349_1415046	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales	1166	Open in IMG/M
3300020076\|Ga0206355_1614077	All Organisms → cellular organisms → Bacteria	793	Open in IMG/M
3300020077\|Ga0206351_10712380	Not Available	528	Open in IMG/M
3300020078\|Ga0206352_11105426	Not Available	687	Open in IMG/M
3300020080\|Ga0206350_10778532	Not Available	1154	Open in IMG/M
3300020080\|Ga0206350_11212612	Not Available	622	Open in IMG/M
3300020082\|Ga0206353_10467293	Not Available	898	Open in IMG/M
3300020610\|Ga0154015_1537411	All Organisms → cellular organisms → Bacteria	875	Open in IMG/M
3300020610\|Ga0154015_1615842	All Organisms → cellular organisms → Bacteria	825	Open in IMG/M
3300021951\|Ga0222624_1622722	All Organisms → cellular organisms → Bacteria	1098	Open in IMG/M
3300022195\|Ga0222625_1674024	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Schlesneria → Schlesneria paludicola	1087	Open in IMG/M
3300022531\|Ga0242660_1115171	Not Available	673	Open in IMG/M
3300030785\|Ga0102757_11423709	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Schlesneria → Schlesneria paludicola	898	Open in IMG/M
3300030830\|Ga0308205_1014334	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales	850	Open in IMG/M
3300030902\|Ga0308202_1013837	All Organisms → cellular organisms → Bacteria	1175	Open in IMG/M
3300030902\|Ga0308202_1027579	All Organisms → cellular organisms → Bacteria	936	Open in IMG/M
3300030902\|Ga0308202_1040647	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales	822	Open in IMG/M
3300030903\|Ga0308206_1063837	All Organisms → cellular organisms → Bacteria	760	Open in IMG/M
3300030903\|Ga0308206_1157086	Not Available	552	Open in IMG/M
3300030905\|Ga0308200_1042281	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Schlesneria → Schlesneria paludicola	825	Open in IMG/M
3300030905\|Ga0308200_1043677	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales	816	Open in IMG/M
3300030905\|Ga0308200_1049900	Not Available	780	Open in IMG/M
3300030905\|Ga0308200_1063372	Not Available	719	Open in IMG/M
3300030905\|Ga0308200_1091220	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	636	Open in IMG/M
3300030939\|Ga0138303_1105559	Not Available	592	Open in IMG/M
3300030989\|Ga0308196_1019526	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales	782	Open in IMG/M
3300030993\|Ga0308190_1046225	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Schlesneria → Schlesneria paludicola	825	Open in IMG/M
3300030993\|Ga0308190_1054775	Not Available	780	Open in IMG/M
3300030993\|Ga0308190_1112908	Not Available	609	Open in IMG/M
3300031058\|Ga0308189_10124442	All Organisms → cellular organisms → Bacteria	852	Open in IMG/M
3300031058\|Ga0308189_10125661	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → unclassified Planctomycetales → Planctomycetales bacterium	849	Open in IMG/M
3300031058\|Ga0308189_10150335	Not Available	798	Open in IMG/M
3300031058\|Ga0308189_10309615	Not Available	621	Open in IMG/M
3300031082\|Ga0308192_1048331	Not Available	633	Open in IMG/M
3300031089\|Ga0102748_11786983	Not Available	588	Open in IMG/M
3300031091\|Ga0308201_10180400	Not Available	684	Open in IMG/M
3300031092\|Ga0308204_10039905	All Organisms → cellular organisms → Bacteria	1091	Open in IMG/M
3300031092\|Ga0308204_10059014	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Schlesneria → Schlesneria paludicola	958	Open in IMG/M
3300031093\|Ga0308197_10052316	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Schlesneria → Schlesneria paludicola	1060	Open in IMG/M
3300031093\|Ga0308197_10188037	Not Available	693	Open in IMG/M
3300031094\|Ga0308199_1064875	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	743	Open in IMG/M
3300031094\|Ga0308199_1123608	Not Available	592	Open in IMG/M
3300031096\|Ga0308193_1083822	Not Available	527	Open in IMG/M
3300031123\|Ga0308195_1015861	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → unclassified Planctomycetales → Planctomycetales bacterium	879	Open in IMG/M
3300031123\|Ga0308195_1023902	All Organisms → cellular organisms → Bacteria	768	Open in IMG/M
3300031123\|Ga0308195_1033273	Not Available	689	Open in IMG/M
3300031422\|Ga0308186_1035710	Not Available	529	Open in IMG/M
3300032515\|Ga0348332_11359955	All Organisms → cellular organisms → Bacteria	1151	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	77.78%
Host-Associated	Host-Associated	22.22%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	62.04%
Plants	Host-Associated → Plants	19.44%
Aquatic	Environmental → Aquatic	15.74%
Human	Host-Associated → Human	2.78%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	61.11%
Freshwater	Environmental → Aquatic → Freshwater	15.74%
Rhizoplane	Host-Associated → Plants → Rhizoplane	10.19%
Rhizosphere	Host-Associated → Plants → Rhizosphere	9.26%
Digestive System	Host-Associated → Human → Digestive System	2.78%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	57.41%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	10.19%
Soil	Host-Associated → Plants → Rhizosphere → Soil	9.26%
Sediment	Environmental → Aquatic → Freshwater → Sediment	7.41%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	7.41%
Loam	Environmental → Terrestrial → Soil → Loam	3.70%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	2.78%
Ice	Environmental → Aquatic → Freshwater → Ice	0.93%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	51.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	10.19%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	9.26%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	7.41%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	7.41%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	4.63%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.70%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	2.78%
Glacial Lake	Environmental → Aquatic → Freshwater → Ice → Glacial Lake	0.93%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.93%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	29.63%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	11.11%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	10.19%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	10.19%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	9.26%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	7.41%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	7.41%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.63%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.78%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	2.78%
Freshwater	Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater	0.93%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.93%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.93%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003162	Avena fatua rhizosphere microbial communities - H4_Rhizo_Litter_21 (Metagenome Metatranscriptome, Counting Only)	Host-Associated	Open in IMG/M
3300003577	Grassland soil microbial communities from Hopland, California, USA - Sample H2_Rhizo_32 (Metagenome Metatranscriptome, Counting Only)	Host-Associated	Open in IMG/M
3300003579	Grassland soil microbial communities from Hopland, California, USA - Sample H4_Rhizo_45 (Metagenome Metatranscriptome, Counting Only)	Host-Associated	Open in IMG/M
3300003693	Avena fatua rhizosphere microbial communities - H2_Rhizo_Litter_49 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300003735	Avena fatua rhizosphere microbial communities - H4_Bulk_Litter_23 (Metagenome Metatranscriptome, Counting Only)	Host-Associated	Open in IMG/M
3300004798	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300004800	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300004801	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-3 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300009083	Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - MAT-04 (megahit assembly)	Environmental	Open in IMG/M
3300010071	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_5_0_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010100	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_20_5_0_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010101	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_5_24_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010109	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_0_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010132	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_16_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010133	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_8_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010136	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_2_24_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010143	Soil microbial communities from Mekong Delta, Cambodia to study soil gas exchange rates - MK-CA-DRY metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010145	Soil microbial communities from Hawaii, USA to study soil gas exchange rates - KP-HI-INT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010147	Soil microbial communities from California, USA to study soil gas exchange rates - BB-CA-RED metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010865	Boreal forest soil eukaryotic communities from Alaska, USA - C3-3 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010878	Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines Pi 3A (Eukaryote Community Metatranscriptome) (version 7)	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011332	Soil microbial communities from California, USA to study soil gas exchange rates - SR-CA-SC2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300011333	Cornfield soil microbial communities from Stanford, California, USA - CI-CA-CRN metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012371	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_2_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012380	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_0_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012393	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012407	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_16_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300019233	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019254	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019259	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020069	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020075	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-5 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020076	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v3)	Environmental	Open in IMG/M
3300020077	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-5 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020080	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020082	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020610	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021951	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022195	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022531	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-28-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300030785	Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PI 5C (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030830	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_368 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030902	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_356 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030903	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_369 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030905	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_204 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030939	Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A9_MS_spring Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300030989	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_197 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030993	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_185 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031058	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031082	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_193 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031089	Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PI 2B (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031091	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_355 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031092	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_367 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031093	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_198 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031094	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_203 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031096	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_194 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031123	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_196 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031422	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_181 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0006778J45830_10721402	3300003162	Avena Fatua Rhizosphere	VDNELEVIRDEMEQTRASLADKLGALEEQVRETVSGAQEAVSSTVEGVKEVVSTVSDTVDSVKEQFSLSKQFDERPWLCV
Ga0007416J51690_10896042	3300003577	Avena Fatua Rhizosphere	VDNELEVIRDEMEQTRASLADKLGALEEQVRETVSGATEAVSSTVEGVKEVVSTVSDTVGSVKDQFSISKQFEEHPWVCMGVAVG
Ga0007429J51699_10488133	3300003579	Avena Fatua Rhizosphere	VDRELEVIHNQMEETRESLASKLGALESQVRDTVGTASEAVTSTVEGVKDVVETVSETVGSVTETFNFSKQVE
Ga0007429J51699_10544553	3300003579	Avena Fatua Rhizosphere	VDNELEVIRDEMEQTRANLAEKLGALETQVRETVSGATEAVSSTVEGVKDVVSTVSETVESVTETFNVSKQ
Ga0007429J51699_11013763	3300003579	Avena Fatua Rhizosphere	VDSELEVIRDEMEQTRASLADKLGALETQVRETVSGASEAVHSTVEGVKEVVSSVKETAETVTEQFSISRQFEQRPW
Ga0032354_11083782	3300003693	Avena Fatua Rhizosphere	MDSEPELEVIREQMHHTRSSLSDKLEALESQVLDTVQTATETVANTVGEVKDVVETVSETVQSVTEKFSISHQVEQRPWTMVA
Ga0006780_10194383	3300003735	Avena Fatua Rhizosphere	VDSERELEVIRDEMEQTRANLADKLGALEEQVRETVSTASETVTSTVEGVKEVVSNVSETVGSVTETLNFPKQIEQHPWIAVGVAV
Ga0006780_10327953	3300003735	Avena Fatua Rhizosphere	VDNELEVIRDEMEQTRANLADKLGALETQVRETVVGAKEAVSSTVEGVKEVVGSVSETMGTVAETFDV
Ga0006780_10517573	3300003735	Avena Fatua Rhizosphere	VDNELEVIRDEMEQTRASLAEKLGALETQVRETVSDATDAVSSTVDGVKNVVSTVSETVESVTETFNLSKH
Ga0058859_117741051	3300004798	Host-Associated	VDNELEVIRDEMEQTRANLAEKLEALESQVRETVSGATDAVSSTVEGVKDVVSSVSETVETV
Ga0058861_119815741	3300004800	Host-Associated	VDSELEVIRDEMEQTRASLADKLGALEQQVRETVSGASEAVHSTVEGVKEVVSSVKETAETVTEQFSLSRQFEQ
Ga0058860_119813541	3300004801	Host-Associated	VDRELEVIRDEMEQTRANLADKLGALEEQVRETVSTASETVTSTVEGVKEVVETVSETVEGVTE
Ga0066903_1017763711	3300005764	Tropical Forest Soil	VDNELEVIRDEMEEKRASLAAKLEALESQVRDTVQSASEAVSSTVGGVKEAVHTVTETVGTVSEKVT
Ga0066903_1052404311	3300005764	Tropical Forest Soil	VDSELEVIRDEMEQTRANLADKLGALESQVRETVSGASEAVSSTVEGVKGVVETVSETVESVTETFNLSKQVEQHPWMAF
Ga0066903_1061321371	3300005764	Tropical Forest Soil	VDRELEVIHNQMEETRESLAHKLGALESQVRDTVGTASEAVSSTVEGVKDVVETVSETV
Ga0105047_108029791	3300009083	Freshwater	MEQTRDALSNKLEALESQVMDTVQTATEGVASAVEGVKATVETVSGTVQSVTDTLNVSRH
Ga0127477_1455552	3300010071	Grasslands Soil	VIRDEMEQTRASLADKLGALEEQVRETVSGAQEAVSSTVEGVKEAVSSVTETVGSVREQFSLSKQFDE
Ga0127440_10646362	3300010100	Grasslands Soil	VIRDEMEQTRANLADKLGALETQVRETVSGATEAVSSTVEGVKDVVSSVSETVESVTDTFNVSK
Ga0127481_10179921	3300010101	Grasslands Soil	VIRDEMEQTRSNLADKLGALETQVRETVVGAKEAVSSTVEGVKEAVGSVTETVGAVTEQLSVSK
Ga0127497_10125231	3300010109	Grasslands Soil	VIRDEMEQTRASLADKLGALENQVRDTVSGATDAVNSTVEGVKGVVESVSGTVE
Ga0127455_11635362	3300010132	Grasslands Soil	MEQTRANLADKLGALENQVRETVSDATEAVSSTVEGVKGVVETVSETVETVTETFNVSK
Ga0127459_10139921	3300010133	Grasslands Soil	VIRDEMEQTRANLADKLGALEEQVRETVSTASETVTSTVEGVKEVVSNVSETVGSVTETLNFPKQV
Ga0127447_10380931	3300010136	Grasslands Soil	VIRDEMEQTRANLAEKLGALENQVRETVSGATDAVSSTVEGVKDVVSTVSETVESVTETFNV
Ga0126322_11050833	3300010143	Soil	VIRDEMEQTRASLAEKLGALENQVRETVSGATEAVSSTVEGVKGVVSSVSETVESVTETF
Ga0126321_14112162	3300010145	Soil	VIRDEMEHTRANLADKLGALEEQVRETVTSASETVTSTVEGVKEVVDTVSETVGSVT
Ga0126319_10301001	3300010147	Soil	VIRDEMEETRANLTNKLEALESQVRETVSGASEAVTSTVEGVKEVVETVSDTVGSMTETFNI
Ga0127503_104754823	3300010154	Soil	VIRDEMELTRANLADKLGALETQVRETVSSATEAVSSTVEGVKDVISTVSESVESVTETFNVSKQVE
Ga0126346_11238561	3300010865	Boreal Forest Soil	VIHNQMEETRESLANKLGALESQVRETVGTATEAVTSTVEGVKDVVETVSETVGSVTETFNI
Ga0136899_100623613	3300010878	Soil	VIRDEMEMTRANLADKLGALENQVRETVSSASETVTSTVEGVKEVVGTVSETVGDVTD
Ga0150983_159880221	3300011120	Forest Soil	VIRDEMELTRANLADKLGALENQVRETVSGATDAVSSTVEGVKGVVESVSETVESVTETFNLSKQVEQHP
Ga0126317_103420672	3300011332	Soil	VIRDEMEQTRANLADKLGALETQVRETVSDAKEAVSSTVEGVKEAVGSVSETMGTVAETF
Ga0127502_100418213	3300011333	Soil	VDRELEVIRDEMEQTRANLADKLGALETQVRETVSTASETVTSTVEGVKEVVSNVSETVGSVTETLNVPKQVE
Ga0127502_106109521	3300011333	Soil	VIRDEMENTRASLAGKLEALESQVRDTVSGASEAVNTTVEGVKDVVSSVSETVGSVTET
Ga0127502_108727862	3300011333	Soil	VIRDEMEQTRSNLADKLGALESQVRETVSTASETVTSTVEGVKEVVDTVSETVEGVTETFNISKH
Ga0150985_1010796973	3300012212	Avena Fatua Rhizosphere	VDRELEVIRDDMEQTRASLADKLGALESQVRETVSGASETVTSTVEGVKEVVSNVTDTVESVSEKVADTFNFSKQV
Ga0150985_1031480843	3300012212	Avena Fatua Rhizosphere	VIRDEMEQTRASLADKLGALEEQVRETVSGAQEAVSSTVEGVKEAVSSVTETVGSVREQFSLSKQFDERPWVCMGAAVAA
Ga0150985_1037536813	3300012212	Avena Fatua Rhizosphere	VIRDEMEQTRSNLADKLGALEDQVRETVSSASETVTSTVEGVKEVVSNVTETVGSVGEALNVPKQVEQHPWIAVGVAVAAG
Ga0150985_1085733871	3300012212	Avena Fatua Rhizosphere	VDRELEVIRDEMEQTRANLADKLGALEEQVRETVSSASDTVTSTVEGVKEVVETVSDTVGSVTETFNISKHVEQHPM
Ga0150985_1116396231	3300012212	Avena Fatua Rhizosphere	VIRDEMEQTRANLAEKLGALENQVRETVSGATEAVSSTVEGVKDVVSTVSETVESVTETFNVSKQ
Ga0150985_1121740933	3300012212	Avena Fatua Rhizosphere	VIRDRMELTRSNLADKLGALESQVRETVSSASDTVTSTVEGVKEVVSNVSETVENVTDTFNVSKKIDE
Ga0150985_1130295413	3300012212	Avena Fatua Rhizosphere	VIRDEMEQTRANLADKLGALESQVRETVSGATEAVSSTVEGVKEVVSTVSETVESVTETFNVS
Ga0134022_10713292	3300012371	Grasslands Soil	VIRDEMEQTRASLADKLGALETQVRETVSGATDAVSSTVEGVKDVVSSVSDTVDTVKEQFSISKQFDEHPWLAV
Ga0134047_10564171	3300012380	Grasslands Soil	VIRDEMEETRANLANKLEALESQVRETVSGASEAVSSTVEGVKDVVSNVTDTVESVTETLNLSKQVEEHPWAAFGIAVA
Ga0134047_10794243	3300012380	Grasslands Soil	VIRDEMEQTRANLADKLGALEEQVRETVSSASETVTSTVEGVKEVVDTVSETVESVTETFNISKQIEQ
Ga0134052_10317263	3300012393	Grasslands Soil	MEQTRANLADKLGALENQVRETVSGATDAVSSTVEGVKGVVETVSETVESVAETFNLS
Ga0134050_12090663	3300012407	Grasslands Soil	VIRDEMEQTRANLADKLGALENQVRETVSGATEAVSSTVEGVKDVVSSVTETVESVTETFNV
Ga0150984_1036223274	3300012469	Avena Fatua Rhizosphere	VIRDEMEQTRANLADKLGALETQVRETVVGAKEAVSSTVEGVKEVVGSVSETMGTVAETFDVT
Ga0150984_1053817972	3300012469	Avena Fatua Rhizosphere	VIRDQMEETRASLADKLEALETQVRETVSSASETVTSAVDGVKEVVETVTDKVGSAVDNV
Ga0150984_1104255263	3300012469	Avena Fatua Rhizosphere	VIRDDMEQTRANLADKLGALESQVRETVSSASETVTSTVEGVKEVVSNVTDTVGSVTDT
Ga0150984_1165340663	3300012469	Avena Fatua Rhizosphere	MDRTRANLGEKLEALEEQVKDTVQVATEGVTAAVEGVKETVETVSETVSTVTETFNISKHIEQHPW
Ga0150984_1193324882	3300012469	Avena Fatua Rhizosphere	VIRDEMEQTRASLADKLGALEDQVRETVSGAQEAVSSTVSGVKEAVSSVTETVGSVREQFSLSKQFDERPWVCM
Ga0066662_125707992	3300018468	Grasslands Soil	VDSELEVIRDEMEQTRANLDDKLGALENQVRETVSGATEAVSSTVEGVKGVVETVSETVESV
Ga0184645_11505602	3300019233	Groundwater Sediment	VDRELEVIRDEMELTRANLADKLGALENQVRETVSGASETVTSTVEGVKDVVETVSDTVSSVTDTFNISKQVEE
Ga0184645_11611503	3300019233	Groundwater Sediment	VDNELEVIRDEMEQTRADLAAKLGALENQVRETVSGATEAVSSTVEGVKEVVETVSETVESVTETFNFSRQFEQHP
Ga0184641_11761183	3300019254	Groundwater Sediment	VDNELEVIRDEMEQTRANLADKLGALETQVRETVSDAREAVSSTVEGVKEVVGSVSETVGSVAEQFSV
Ga0184641_14028952	3300019254	Groundwater Sediment	VDNELEVIRDEMELTRANLAEKLGALENQVRETVSGATEAVSSTVEGVKEVVSTVSDTVDSVKEQFSLSKQFDE
Ga0184641_14575522	3300019254	Groundwater Sediment	VDNELEVIRDEMEQTRANLADKLGALESQVRETVSSASETVTSTVEGVKEVVSNVSETVGNVGDALNIPK
Ga0184646_14562481	3300019259	Groundwater Sediment	VDNELEVIRDEMELTRANLAEKLGALENQVRETVSGATEAVSSTVEGVKDVVSSVSETVESVTETFNVYKHV
Ga0197907_105894462	3300020069	Corn, Switchgrass And Miscanthus Rhizosphere	VDNELEVIRDEMEQTRANLAEKLEALESQVRETVSGATEAVSSTVEGVKDVVETVTETVENVTETFNVSKQVEQH
Ga0197907_114179703	3300020069	Corn, Switchgrass And Miscanthus Rhizosphere	VDSELEVIRDEMELTRASLADKLGALEQQVRETVSGASEAVHSTVEGVKEVVSSVKETAETVTEQFSLSRQFEQH
Ga0206349_14150463	3300020075	Corn, Switchgrass And Miscanthus Rhizosphere	VDNELEVIRDEMEQTRANLADKLGALETQVRQTVSGATEAVNSTVEGVKEVVSNVTETVETVTETFNVSKQ
Ga0206355_16140771	3300020076	Corn, Switchgrass And Miscanthus Rhizosphere	VDSELEVIRDEMELTRASLADKLGALEQQVRETVSGASEAVHSTVEGVKEVVSSVKETAETVTEQFSISRQFEQHPWA
Ga0206351_107123802	3300020077	Corn, Switchgrass And Miscanthus Rhizosphere	VDSERELEVIRDEMEQTRANLADKLGALEEQVRDTVSSASETVSSTVEGVKDVVSNVTETVENVTDTFNVSKQIE
Ga0206352_111054261	3300020078	Corn, Switchgrass And Miscanthus Rhizosphere	VDSELEVIRDEMEQTRANLAEKLGALENQVRETVSGATEAVSSTVEGVKGVVESVSETVESVTE
Ga0206350_107785321	3300020080	Corn, Switchgrass And Miscanthus Rhizosphere	VDSELEVIRDEMEQTRANLADKLGALENQVRETVSGATEAVSSTVEGVKGVVETVSETVESVTETFNL
Ga0206350_112126121	3300020080	Corn, Switchgrass And Miscanthus Rhizosphere	VDNELEVIRDEMEQTRASLADKLGALEERVSETVSGATEAVSSTVAGVKEVVSSVSDTVGSVKEQISVSKQFDEH
Ga0206353_104672931	3300020082	Corn, Switchgrass And Miscanthus Rhizosphere	VDSELEVIRDEMEQTRASLADKLGALENQVRETVSDATDAVHSTVEGVKDVVGTVSETFESVTEQLSVTKQVENH
Ga0154015_15374113	3300020610	Corn, Switchgrass And Miscanthus Rhizosphere	VDSELEVIRDEMELTRASLADKLGALEQQVRETVSGASEAVHSTVEGVKEVVSSVKETAETVTEQFSISRQFEQH
Ga0154015_16158423	3300020610	Corn, Switchgrass And Miscanthus Rhizosphere	VDNELEVIRDEMEQTRANLADKLGALENQVRETVSGATEAVSSTVEGVKDVVSSVSETVESVTETFNVSKQVEQH
Ga0222624_16227223	3300021951	Groundwater Sediment	VDNELEVIRDEMEQTRANLADKLGALETQVRETVSGATDAVNSTVEGVKDVVSTVSETVESVTETFNVSKQ
Ga0222625_16740243	3300022195	Groundwater Sediment	VDSELEVIRDEMEQTRANLADKLGALEEQVRETVSNASETVASTVEGVKEVVSNVSETVGNVTDTLNVP
Ga0242660_11151711	3300022531	Soil	VDSERELEVIRDEMEQTRANLADKLGALEEQVRETVSSASETVTSTVEGVKEVVSNVSETVGTVTDTLNIPKQVEQHPWVALGTAVAAGF
Ga0102757_114237093	3300030785	Soil	VDSELEVIRDEMEETRANLANKLEALESQVRETVSGASEAVTSTVEGVKEVVENVTGTVESVTETFNISKQVEEHPWAA
Ga0308205_10143343	3300030830	Soil	VDNELEVIRDEMEQTRANLADKLGALENQVRETVSGATDAVTSTVEGVKDVVSTVSETVESVTETFNVSKQVE
Ga0308202_10138373	3300030902	Soil	VDSELEVIRDEMEQTRASLAGKLEALESQVRDTVSGASEAVNTTVEGVKDVVSSVSETVGSVKETFNVSRHIEEN
Ga0308202_10275793	3300030902	Soil	VDNELEVIRDEMEQTRANLADKLGALETQVRETVSGATEAVSSTVEGVKDVVSSVSETVESVTETFNVYK
Ga0308202_10406473	3300030902	Soil	VDSERELEVIRDEMEQTRANLADKLGALESQVRETVSSASETVTSTVEGVKEVVSNVTETVGSVTE
Ga0308206_10638373	3300030903	Soil	VDSELEVIRDEMEQTRANLADKLGALENQVRETVSGATDAVNSTVEGVKEVVETVSGTVESVTETFNVSKQVEQHP
Ga0308206_11570861	3300030903	Soil	VDSELEVIRDEMEQTRANLADKLGALESQVRETVSTASETVASTVEGVKEVVGNVSETVESVTETLNISKQVDQHPWVALGVAVAAGFV
Ga0308200_10422811	3300030905	Soil	VDSELEVIRDEMEQTRANLADKLGALENQVRETVSGATDAVNSTVEGVKGVVESVSGTVESVTETFNVSKQVEQHP
Ga0308200_10436773	3300030905	Soil	VDNELEVIRDEMEQTRANLAEKLEALESQVRETVSGATDAVNSTVEGVKEVVETVSGTVESV
Ga0308200_10499003	3300030905	Soil	VDNELEVIRDEMEQTRADLAAKLGALENQVRETVSGATEAVSSTVEGVKEVVETVSETVESVTETFNFSRQFE
Ga0308200_10633723	3300030905	Soil	VDSERELEVIRDEMEQTRANLADKLGALESQVRETVSSASETVTSTVEGVKEVVSNVSET
Ga0308200_10912202	3300030905	Soil	VDSQRELEVIRDEMENTRANLADKLGALESQVRETVSSASETVTSTVEGVKEVVSNVSETVGTVTDTFNVPK
Ga0138303_11055591	3300030939	Soil	VDSELEVIRDEMEQTRANLADKLGALENQVRETVSGATEAVSSTVEGVKGVVETVSETVESVTETFNF
Ga0308196_10195263	3300030989	Soil	VDNELEVIRDEMEQTRASLADKLGALEDQVRETVSDAKEAVSSTVEGVKEAVSSTVEGVKEAVGTVSETMGTVAETFD
Ga0308190_10462251	3300030993	Soil	VDSERELEVIRDEMEQTRASLAGKLEALESQVRDTVSGASEAVNTTVEGVKDVVSSVSETVGSVKETFNV
Ga0308190_10547753	3300030993	Soil	VDSERELEVIRDEMEQTRANLADKLGALESQVRETVSSASETVTSTVEGVKEVVSNVTETVGNVTDTLNIPKQIEQHPWAAMGVAMAA
Ga0308190_11129082	3300030993	Soil	VDSELEVIRDEMEQTRANLADKLGALENQVRETVSGATEAVSSTVEGVKGVVETVSETVESVTETFNLSKQVE
Ga0308189_101244423	3300031058	Soil	VDSELEVIRDEMEQTRANLAGKLEALESQVRDTVSGASEAVNTTVEGVKDVVSSVSDTVGSVKETFNVSKHIE
Ga0308189_101256613	3300031058	Soil	VDSELEVIRDEMEQTRANLADKLGALESQVRETVSTASETVSSTVEGVKEVVSNVSETVGSVTDTLNIPKQAE
Ga0308189_101503353	3300031058	Soil	VDNELEVIRDEMEQTRADLAAKLGALENQVRETVSGATEAVSSTVEGVKEVVETVSETVESVTETFNFSRQFEQ
Ga0308189_103096151	3300031058	Soil	VDRELEVIRDEMEQTRANLADKLGALEEQVRETVSSASDTVTSTVEGVKEVVETVSDTVGSVTETFNISKHIEQHPML
Ga0308192_10483312	3300031082	Soil	VDNELEVIRDEMEQTRSNLADKLGALETQVRETVSDAKLAVSSTVEGVKEVVGSVTDTVGSVADTFNVNKQVD
Ga0102748_117869832	3300031089	Soil	VDNELEVIRDEMELTRANLAVKLEALETQVRETVSGATEAVSSTVDGVKDVVSSVSETVE
Ga0308201_101804002	3300031091	Soil	VDSELEVIRDEMEQTRASLAGKLEALESQVRDTVSGASEAVNTTVEGVKDVVSSVSETVGSVK
Ga0308204_100399051	3300031092	Soil	VDNELEVIRDEMEQTRANLADKLGALETQVRETVSGATEAVSSTVEGVKDVVSSVSETVE
Ga0308204_100590143	3300031092	Soil	VDSERELEVIRDEMEQTRANLADKLGALESQVRETVSTASETVTSTVEGVKEVVSNVSETVGNVGDALNIPKQIEQHPWIA
Ga0308197_100523161	3300031093	Soil	VDSELEVIRDEMEQTRANLADKLGALESQVRETVSSASETVTSTVEGVKEVVSSVSETVENVTDTLNV
Ga0308197_101880372	3300031093	Soil	VDNELEVIRDEMEQTRANLADKLGALETQVRETVSGATDAVNSTVEGVKDVVSTVSETVESVTETFNVSKQVEQ
Ga0308199_10648753	3300031094	Soil	VDSELEVIRDEMEQTRASLAGKLEALESQVRDTVSGASEAVNTTVEGVKDVVSSVSETVGSVKETF
Ga0308199_11236081	3300031094	Soil	VDRELEVIRDEMENTRANLADKLGALESQVRETVSTASETVASTVEGVKEVVTGVSETVE
Ga0308193_10838223	3300031096	Soil	VDSELEVIRDEMEQTRANLADKLGALENQVRETVSGATDAVNSTVEGVKGVVESVSGTVE
Ga0308195_10158611	3300031123	Soil	VDNELEVIRDEMELTRSNLADKLGALETQVRETVSDAREAVSSTVEGVKEVVGSVSETVGSVTEQL
Ga0308195_10239021	3300031123	Soil	VDRELEVIHNQMEETRESLASKLGALESQVRDTVGTASEAVTSTVEGVKDVVETVSETVGSVTETFNISKQAE
Ga0308195_10332731	3300031123	Soil	VDSELEVIRDEMEQTRANLADKLGALENQVRETVSGATDAVNSTVEGVKEVVETVSGTVESVTETFNVSKQVE
Ga0308186_10357102	3300031422	Soil	VDNELEVIRDEMEQTRANLADKLGALETQVRETVSGATEAVSSTVEGVKDVVSSVSETVESVTETFNVSKQVE
Ga0348332_113599553	3300032515	Plant Litter	VDNELEVIRDEMDLTRTSLSDKLEALESQVHETVVTATNTVAETVENVKGVVESVTGAVESVAD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F089779

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences