NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F089904

Metagenome Family F089904

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F089904
Family Type Metagenome
Number of Sequences 108
Average Sequence Length 60 residues
Representative Sequence MTEEVSEEIKKEIFDLISTPGVEIEEIAEKLNLDYDKVMKILSDEYLKHNLDYGRRMCCR
Number of Associated Samples 50
Number of Associated Scaffolds 108

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.97 %
% of genes near scaffold ends (potentially truncated) 10.19 %
% of genes from short scaffolds (< 2000 bps) 56.48 %
Associated GOLD sequencing projects 43
AlphaFold2 3D model prediction Yes
3D model pTM-score0.54

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (72.222 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface
(32.407 % of family members)
Environment Ontology (ENVO) Unclassified
(41.667 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Subsurface (non-saline)
(34.259 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 44.32%    β-sheet: 0.00%    Coil/Unstructured: 55.68%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.54
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 108 Family Scaffolds
PF01557FAA_hydrolase 18.52
PF14697Fer4_21 10.19
PF00687Ribosomal_L1 7.41
PF03946Ribosomal_L11_N 6.48
PF01946Thi4 3.70
PF01156IU_nuc_hydro 3.70
PF00406ADK 3.70
PF00037Fer4 3.70
PF01339CheB_methylest 2.78
PF00071Ras 2.78
PF00466Ribosomal_L10 2.78
PF00106adh_short 1.85
PF09512ThiW 1.85
PF01841Transglut_core 1.85
PF01575MaoC_dehydratas 0.93
PF10559Plug_translocon 0.93
PF08713DNA_alkylation 0.93
PF00428Ribosomal_60s 0.93
PF00298Ribosomal_L11 0.93
PF02223Thymidylate_kin 0.93
PF10120ThiP_synth 0.93
PF02776TPP_enzyme_N 0.93
PF12773DZR 0.93
PF13187Fer4_9 0.93
PF13229Beta_helix 0.93
PF01613Flavin_Reduct 0.93
PF13240zinc_ribbon_2 0.93
PF01884PcrB 0.93
PF00132Hexapep 0.93

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 108 Family Scaffolds
COG0080Ribosomal protein L11Translation, ribosomal structure and biogenesis [J] 7.41
COG0081Ribosomal protein L1Translation, ribosomal structure and biogenesis [J] 7.41
COG2201Chemotaxis response regulator CheB, contains REC and protein-glutamate methylesterase domainsSignal transduction mechanisms [T] 5.56
COG0563Adenylate kinase or related kinaseNucleotide transport and metabolism [F] 3.70
COG1635Thiazole synthase/Archaeal ribulose 1,5-bisphosphate synthetaseCarbohydrate transport and metabolism [G] 3.70
COG1957Inosine-uridine nucleoside N-ribohydrolaseNucleotide transport and metabolism [F] 3.70
COG0244Ribosomal protein L10Translation, ribosomal structure and biogenesis [J] 2.78
COG0125Thymidylate kinaseNucleotide transport and metabolism [F] 0.93
COG1646Glycerol-1-phosphate heptaprenyltransferaseLipid transport and metabolism [I] 0.93
COG1853FMN reductase RutF, DIM6/NTAB familyEnergy production and conversion [C] 0.93
COG2058Ribosomal protein L12E/L44/L45/RPP1/RPP2Translation, ribosomal structure and biogenesis [J] 0.93
COG49123-methyladenine DNA glycosylase AlkDReplication, recombination and repair [L] 0.93


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A72.22 %
All OrganismsrootAll Organisms27.78 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001751|JGI2172J19969_10062617Not Available1177Open in IMG/M
3300001752|JGI2173J19968_10169691Not Available611Open in IMG/M
3300001752|JGI2173J19968_10215569Not Available532Open in IMG/M
3300002052|SMTZ1_10002650Not Available17985Open in IMG/M
3300002052|SMTZ1_10014785All Organisms → cellular organisms → Archaea → Euryarchaeota → Thermococci → Thermococcales → Thermococcaceae7682Open in IMG/M
3300002052|SMTZ1_10035805All Organisms → cellular organisms → Bacteria5924Open in IMG/M
3300002465|LO132_10083288Not Available1196Open in IMG/M
3300003144|Ga0052244_1013264Not Available628Open in IMG/M
3300005613|Ga0074649_1066157All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Lokiarchaeota → unclassified Lokiarchaeota → Candidatus Lokiarchaeota archaeon1462Open in IMG/M
3300007533|Ga0102944_1000539Not Available28873Open in IMG/M
3300007900|Ga0111031_1097842Not Available1375Open in IMG/M
3300008516|Ga0111033_1030808All Organisms → cellular organisms → Archaea2540Open in IMG/M
3300008517|Ga0111034_1265041Not Available4046Open in IMG/M
3300009034|Ga0115863_1003225Not Available25348Open in IMG/M
3300009034|Ga0115863_1003321Not Available24932Open in IMG/M
3300009034|Ga0115863_1021154Not Available8896Open in IMG/M
3300009034|Ga0115863_1074785All Organisms → cellular organisms → Archaea4273Open in IMG/M
3300009034|Ga0115863_1085669Not Available3958Open in IMG/M
3300009034|Ga0115863_1122988All Organisms → cellular organisms → Archaea → Euryarchaeota3204Open in IMG/M
3300009034|Ga0115863_1412707All Organisms → cellular organisms → Archaea → Euryarchaeota1562Open in IMG/M
3300009034|Ga0115863_1697588All Organisms → cellular organisms → Archaea1138Open in IMG/M
3300009150|Ga0114921_10074058All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales2200Open in IMG/M
3300009150|Ga0114921_11354377Not Available533Open in IMG/M
3300009314|Ga0117908_1038706Not Available4775Open in IMG/M
3300009488|Ga0114925_10001301All Organisms → cellular organisms → Archaea12198Open in IMG/M
3300009488|Ga0114925_10005830All Organisms → cellular organisms → Archaea → Euryarchaeota6555Open in IMG/M
3300009488|Ga0114925_10022151All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales3638Open in IMG/M
3300009488|Ga0114925_10022596Not Available3608Open in IMG/M
3300009488|Ga0114925_10072426Not Available2125Open in IMG/M
3300009488|Ga0114925_10140247Not Available1566Open in IMG/M
3300009488|Ga0114925_10828157Not Available666Open in IMG/M
3300009488|Ga0114925_10847740Not Available659Open in IMG/M
3300009488|Ga0114925_11266551Not Available543Open in IMG/M
3300009499|Ga0114930_10446698Not Available591Open in IMG/M
3300009504|Ga0114946_10311527Not Available828Open in IMG/M
3300009529|Ga0114919_10090775Not Available2225Open in IMG/M
3300009788|Ga0114923_10057849All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Lokiarchaeota2668Open in IMG/M
3300009788|Ga0114923_10225383Not Available1351Open in IMG/M
3300009788|Ga0114923_10398188Not Available1014Open in IMG/M
3300009788|Ga0114923_10471010Not Available932Open in IMG/M
3300009788|Ga0114923_11176550Not Available593Open in IMG/M
3300010413|Ga0136851_11381126Not Available679Open in IMG/M
3300011118|Ga0114922_10062409All Organisms → cellular organisms → Archaea → Euryarchaeota3233Open in IMG/M
3300011118|Ga0114922_10345441All Organisms → cellular organisms → Archaea1239Open in IMG/M
3300011118|Ga0114922_10881083Not Available729Open in IMG/M
3300012002|Ga0153774_1007324Not Available10935Open in IMG/M
3300014903|Ga0164321_10402698All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Lokiarchaeota → unclassified Lokiarchaeota → Candidatus Lokiarchaeota archaeon674Open in IMG/M
3300017963|Ga0180437_10032861All Organisms → cellular organisms → Archaea → Euryarchaeota → Thermococci → Thermococcales → Thermococcaceae → Thermococcus5212Open in IMG/M
3300017963|Ga0180437_10283656Not Available1266Open in IMG/M
3300017963|Ga0180437_10323410All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Lokiarchaeota → unclassified Lokiarchaeota → Candidatus Lokiarchaeota archaeon1168Open in IMG/M
3300017963|Ga0180437_10687683Not Available742Open in IMG/M
3300017971|Ga0180438_10028911All Organisms → cellular organisms → Archaea → Euryarchaeota5737Open in IMG/M
3300017971|Ga0180438_10157997Not Available1846Open in IMG/M
3300017990|Ga0180436_10920838Not Available661Open in IMG/M
3300017991|Ga0180434_10525140All Organisms → cellular organisms → Bacteria908Open in IMG/M
3300018080|Ga0180433_10000907Not Available50484Open in IMG/M
3300018080|Ga0180433_10076039Not Available2984Open in IMG/M
3300021468|Ga0190360_1173000Not Available697Open in IMG/M
3300021468|Ga0190360_1274897Not Available500Open in IMG/M
(restricted) 3300022938|Ga0233409_10133114Not Available808Open in IMG/M
3300024263|Ga0209978_10107713Not Available1427Open in IMG/M
3300024265|Ga0209976_10003904All Organisms → cellular organisms → Bacteria8202Open in IMG/M
3300024265|Ga0209976_10039106Not Available2475Open in IMG/M
3300024265|Ga0209976_10214659Not Available1022Open in IMG/M
3300024265|Ga0209976_10346531Not Available789Open in IMG/M
3300024432|Ga0209977_10002868All Organisms → cellular organisms → Archaea → Euryarchaeota7802Open in IMG/M
3300024432|Ga0209977_10012050All Organisms → cellular organisms → Archaea4076Open in IMG/M
3300024432|Ga0209977_10049729Not Available2039Open in IMG/M
3300024432|Ga0209977_10058785All Organisms → cellular organisms → Archaea1870Open in IMG/M
3300024432|Ga0209977_10289266All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Lokiarchaeota → unclassified Lokiarchaeota → Candidatus Lokiarchaeota archaeon789Open in IMG/M
3300024432|Ga0209977_10412431Not Available639Open in IMG/M
3300024433|Ga0209986_10222025Not Available931Open in IMG/M
3300027811|Ga0256868_10025926Not Available2759Open in IMG/M
3300027888|Ga0209635_10041163Not Available3761Open in IMG/M
3300027888|Ga0209635_10127469Not Available2085Open in IMG/M
3300027888|Ga0209635_10141571Not Available1970Open in IMG/M
3300027888|Ga0209635_10152000Not Available1894Open in IMG/M
3300027888|Ga0209635_10417790Not Available1040Open in IMG/M
3300027888|Ga0209635_10649835Not Available779Open in IMG/M
3300027888|Ga0209635_10672201Not Available762Open in IMG/M
3300027888|Ga0209635_10969397Not Available591Open in IMG/M
3300027893|Ga0209636_10791319All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Lokiarchaeota → unclassified Lokiarchaeota → Candidatus Lokiarchaeota archaeon728Open in IMG/M
3300027901|Ga0209427_10017151Not Available7709Open in IMG/M
3300027901|Ga0209427_10017265All Organisms → cellular organisms → Archaea7682Open in IMG/M
3300027901|Ga0209427_10020560Not Available6913Open in IMG/M
3300027901|Ga0209427_10112627Not Available2407Open in IMG/M
3300027901|Ga0209427_10222637Not Available1560Open in IMG/M
3300027901|Ga0209427_10681164Not Available745Open in IMG/M
3300027901|Ga0209427_10902226Not Available614Open in IMG/M
3300027917|Ga0209536_100460813Not Available1587Open in IMG/M
3300027917|Ga0209536_100970766Not Available1048Open in IMG/M
3300027917|Ga0209536_101752428Not Available750Open in IMG/M
3300031255|Ga0315554_1233848Not Available596Open in IMG/M
3300031281|Ga0307420_1234024Not Available564Open in IMG/M
3300031359|Ga0307426_1072093All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Lokiarchaeota → unclassified Lokiarchaeota → Candidatus Lokiarchaeota archaeon1362Open in IMG/M
3300031552|Ga0315542_1023526Not Available2762Open in IMG/M
3300031652|Ga0315553_10071084Not Available1851Open in IMG/M
3300031652|Ga0315553_10131757Not Available1206Open in IMG/M
3300031653|Ga0315550_1125790Not Available1055Open in IMG/M
3300031746|Ga0315293_10020939Not Available5856Open in IMG/M
3300032020|Ga0315296_10674362All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Lokiarchaeota → unclassified Lokiarchaeota → Candidatus Lokiarchaeota archaeon522Open in IMG/M
3300032156|Ga0315295_10374765Not Available1447Open in IMG/M
3300033489|Ga0299912_10013474All Organisms → cellular organisms → Archaea → Euryarchaeota6908Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Deep SubsurfaceEnvironmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface32.41%
Marine SedimentEnvironmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment23.15%
Hypersaline Lake SedimentEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment9.26%
Sediment, IntertidalEnvironmental → Aquatic → Marine → Intertidal Zone → Sediment → Sediment, Intertidal7.41%
Salt Marsh SedimentEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh Sediment6.48%
SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Sediment2.78%
Marine SedimentEnvironmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment2.78%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh2.78%
Hydrothermal Vent Microbial MatEnvironmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Vent Microbial Mat1.85%
SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment0.93%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Microbialites → Unclassified → Freshwater Lake0.93%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater0.93%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine0.93%
Marine SedimentEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine Sediment0.93%
Marine SedimentEnvironmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment0.93%
Saline Water And SedimentEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment0.93%
Saline Lake Microbial MatEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Microbial Mats → Saline Lake Microbial Mat0.93%
Mangrove SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Mangrove Sediment0.93%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.93%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil0.93%
Pond SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Pond Soil0.93%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001751Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-30_32EnvironmentalOpen in IMG/M
3300001752Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-1-36_30EnvironmentalOpen in IMG/M
3300002052Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-1-36_30EnvironmentalOpen in IMG/M
3300002465Anoxic frehswater biofilm from Lago dell Orsa, Frasassi caves, ItalyEnvironmentalOpen in IMG/M
3300003144Marine sediment microbial communities from deep subseafloor - Sample from 18.6 mbsfEnvironmentalOpen in IMG/M
3300005613Saline sediment microbial communities from Etoliko Lagoon, Greece - sedimentEnvironmentalOpen in IMG/M
3300007533Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_restored_D_shore_MGEnvironmentalOpen in IMG/M
3300007900Marine sediment microbial communities from Aarhus Bay station M5, Denmark - 25 cmbsf. Combined Assembly of MM1PM1EnvironmentalOpen in IMG/M
3300008516Marine sediment microbial communities from Aarhus Bay station M5, Denmark - 125 cmbsf. Combined Assembly of MM3PM3EnvironmentalOpen in IMG/M
3300008517Marine sediment microbial communities from Aarhus Bay station M5, Denmark - 175 cmbsf. Combined Assembly of Gp0128389 and Gp0131431 MM4PM4EnvironmentalOpen in IMG/M
3300009034Intertidal mud flat sediment archaeal communities from Garolim Bay, Chungcheongnam-do, KoreaEnvironmentalOpen in IMG/M
3300009150Deep subsurface microbial communities from South Atlantic Ocean to uncover new lineages of life (NeLLi) - Benguela_00093 metaGEnvironmentalOpen in IMG/M
3300009314Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 900m, 250-2.7um, replicate aEnvironmentalOpen in IMG/M
3300009488Deep subsurface microbial communities from Indian Ocean to uncover new lineages of life (NeLLi) - Sumatra_00607 metaGEnvironmentalOpen in IMG/M
3300009499Deep subsurface microbial communities from Anholt, Denmark to uncover new lineages of life (NeLLi) - Anholt_01485 metaGEnvironmentalOpen in IMG/M
3300009504Lake sediment microbial communities from Walker lake, Nevada to study Microbial Dark Matter (Phase II) - Walker Lake 11/02/13 Deep SedimentEnvironmentalOpen in IMG/M
3300009529Deep subsurface microbial communities from Black Sea to uncover new lineages of life (NeLLi) - Black_00105 metaGEnvironmentalOpen in IMG/M
3300009788Deep subsurface microbial communities from Indian Ocean to uncover new lineages of life (NeLLi) - Sumatra_00157 metaGEnvironmentalOpen in IMG/M
3300010413Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China - Maipo_9EnvironmentalOpen in IMG/M
3300011118Deep subsurface microbial communities from Aarhus Bay to uncover new lineages of life (NeLLi) - Aarhus_00045 metaGEnvironmentalOpen in IMG/M
3300012002Saline lake microbial mat microbial communities from Tebenquiche Lake, II Region de Antofagasta, Chile - Tebenquiche 201212EnvironmentalOpen in IMG/M
3300014903Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay12, Core 4567-28, 21-24 cmEnvironmentalOpen in IMG/M
3300017963Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_D_1 metaGEnvironmentalOpen in IMG/M
3300017971Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_D_2 metaGEnvironmentalOpen in IMG/M
3300017990Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_S_2 metaGEnvironmentalOpen in IMG/M
3300017991Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_D_2 metaGEnvironmentalOpen in IMG/M
3300018080Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_D_1 metaGEnvironmentalOpen in IMG/M
3300021468Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-18-3-4_MGEnvironmentalOpen in IMG/M
3300022938 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_oxic_13_MGEnvironmentalOpen in IMG/M
3300024263Deep subsurface microbial communities from South Atlantic Ocean to uncover new lineages of life (NeLLi) - Benguela_00093 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300024265Deep subsurface microbial communities from Indian Ocean to uncover new lineages of life (NeLLi) - Sumatra_00157 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300024432Deep subsurface microbial communities from Indian Ocean to uncover new lineages of life (NeLLi) - Sumatra_00607 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300024433Deep subsurface microbial communities from Black Sea to uncover new lineages of life (NeLLi) - Black_00105 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027811Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT92D227 HiSeqEnvironmentalOpen in IMG/M
3300027888Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-30_32 (SPAdes)EnvironmentalOpen in IMG/M
3300027893Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-1-52-54 (SPAdes)EnvironmentalOpen in IMG/M
3300027901Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-1-36_30 (SPAdes)EnvironmentalOpen in IMG/M
3300027917Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-8_12 (SPAdes)EnvironmentalOpen in IMG/M
3300031255Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1603-70EnvironmentalOpen in IMG/M
3300031281Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1602-40EnvironmentalOpen in IMG/M
3300031359Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1603-40EnvironmentalOpen in IMG/M
3300031511Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1603-20EnvironmentalOpen in IMG/M
3300031552Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1601-20EnvironmentalOpen in IMG/M
3300031652Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1601-40EnvironmentalOpen in IMG/M
3300031653Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1601-90EnvironmentalOpen in IMG/M
3300031746Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_20EnvironmentalOpen in IMG/M
3300032020Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G14_18EnvironmentalOpen in IMG/M
3300032029Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1601-170EnvironmentalOpen in IMG/M
3300032156Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G14_0EnvironmentalOpen in IMG/M
3300033489Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT95D214EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
JGI2172J19969_1006261723300001751Marine SedimentMSLEVSEEVKKEIFQLIATPGIEIEDISKKTNLDQDTILKILSEEYLKCNLDHGRRLCCRF*
JGI2173J19968_1016969123300001752Marine SedimentMTEEISDKIKKEIFKLISTPGVEIEEIAEKVNSAYHSNLNYEKVMNILS
JGI2173J19968_1021556913300001752Marine SedimentEIFRLICIPGTCIEEIAKKLNLDYDKVKEILSEEFLKHNLDHGRRLCCRF*
SMTZ1_10002650193300002052Marine SedimentMMTSEINENIKQEIFRLICIPGTCIEEIAKKLNLDYDKVKEILSEEFLKHNLDHGRRLCCRF*
SMTZ1_1001478573300002052Marine SedimentMCMEFSEEVKKKICELISKPGITIEDISKEVNLDYDTIMRILSEEYFKYNLDYGRRLCCRF*
SMTZ1_1003580543300002052Marine SedimentMTEEVSEDIKKEIFILISTPGIEIQDIAEKLNLDYDRVMNILADEYFKHNLDYGRRMCCRF*
LO132_1008328813300002465Freshwater LakeMTLEVSKDVKEEIFKLISIPGIEIEDIAKKVNLDQETVMKVLSDEYFRTDLTHGRRLCCRF*
Ga0052244_101326423300003144Marine SedimentMTVEVSEEVKKEIFKLIATPGIEIDDIVKKTKLDSETILNILSEEYLRCNLDHGKSLCCR
Ga0074649_106615733300005613Saline Water And SedimentMTEEVSEETKKEILQLISTPGVEVQDIAEKLNLEYEKVMNVLSDEYLKHNLDYGRRMCCRF*
Ga0102944_1000539283300007533Pond SoilMIEVNEETKKTIFELITVPGMDIEDIAKKLNLDYQTVHEILSEEYLKNNLDYGRRLCCRWT*
Ga0111031_109784233300007900Marine SedimentMSSEVSEEIKQTIFRLISEPGVEIEDIVKEVELDRETVMNILTDEYSKNDLDQGRRLCCRF*
Ga0111033_103080843300008516Marine SedimentKKKIFDLISTPGIEIEDIIEKVNLDCDTIMKILSEEYFKCNLDHGRSLCCR*
Ga0111034_126504133300008517Marine SedimentMSIEVSEEVKKKICELISTPGIGIEDISKEVNLDYDTVMKTLSEEYFKYNLDHGRSLCCRF*
Ga0115863_1003225303300009034Sediment, IntertidalMNSEVSEEVKKVIFDLISTPGIEIEDIINRVNLDYDTILNILSEEYFKCNLDHGHRLCCRF*
Ga0115863_1003321283300009034Sediment, IntertidalMEVNKEVIKKICELISTPGTEIEDIAKEVNLDYDTVMKILSEEYFKCNLDYGRRLCCRF*
Ga0115863_1021154113300009034Sediment, IntertidalMEVNKEVIKKICELISTPGTEIEDIAKEVNLDYDTVMKILSEEYFKCNLDYGRRLCCRWRACKF*
Ga0115863_107478563300009034Sediment, IntertidalMNPEISEEIKKEIFDLISTPGIELEDIIKKVDLDYDTILDILSEEYFKCNLDHGRRLCCRF*
Ga0115863_108566913300009034Sediment, IntertidalMTSDVNEETKKEIFRLISTPGIEIEDIVKQVNLDYDTVMKILCDEYLRNNLDYGRRLCCRF*
Ga0115863_112298843300009034Sediment, IntertidalMSIEITEEVKNEIFKLISTPGVEIEEIAEKVNLDCNIVMKILEDEYFRHNLDYGRRLCCRY*
Ga0115863_141270713300009034Sediment, IntertidalFFVIMSIEITEEVKNEIFKLISTPGVEIEEIAEKVNLDCNIVMKILEDEYFRHNLDYGRRLCCRY*
Ga0115863_169758813300009034Sediment, IntertidalFTLVNMEVNKEVIKKICELISTPGTEIEDIAKEVNLDYDTVMKILSEEYFKCNLDYGRRLCCRF*
Ga0114921_1007405843300009150Deep SubsurfaceMNSDVDEETKKEIFKLISTPGIEIEDIVERVNLDYDKVMKILSDEYLRNNLDYGRRLCCRF*
Ga0114921_1028628733300009150Deep SubsurfaceMNSEVSEEVKKEIFNLISTPGIEIEDIIKKVKLNYDTILNILSEEYFRCNLDHGRRLCCKF*
Ga0114921_1135437713300009150Deep SubsurfaceMISDVNEETKKEIFKLISTPGIEIQDIVERVNLDYDQVMKILSDEYLRNNLDYGRSLCCRF*
Ga0117908_103870623300009314MarineMIDVDLKKKIFELISTPGIEVEDIAKSVNLEFDEVMEILSEEYLRTNLDFGRRLCCR*
Ga0114925_1000130193300009488Deep SubsurfaceMPAEISEDIKKQIFKMISTPGVEISDIAKKLSLDYDKVVEILADEYLKHNLDYGRRMCCRF*
Ga0114925_1000583043300009488Deep SubsurfaceMTVEVSEEVKKEIFQLIATPGIDIEEISKKINLDQDTILKILSEEYFKCNLDHGRRLCCRF*
Ga0114925_1002215133300009488Deep SubsurfaceMISDVNEETKKEIFRLISTPGIEIKDIVERVNLDYDKVMKILSDEYLRNNLDYGRRLCCRF*
Ga0114925_1002259653300009488Deep SubsurfaceMSDDVSEDVKKEIFRLICQPGTEIEDIAKILNLDNEKIMEILSNEYLKTNLDHGRRLCCRF*
Ga0114925_1007242623300009488Deep SubsurfaceMTEEVSEDVKKEIFRLISIPGIEIDDIVKQLNLDYDKVMKILENEYLRANLDYGRRLCCRF*
Ga0114925_1014024723300009488Deep SubsurfaceVTEEVSEEIKKEIFELISTPGVEIEEIAEKLNLDYDQVMKILSDEYLKHNLDYGRRMCCRF*
Ga0114925_1082815713300009488Deep SubsurfaceMTEEVSEEIKKEIFDLISTPGVEIEEIAEKLNLDYDEVMKILSDEYLKHNLDYGRRMCCRF*
Ga0114925_1084774013300009488Deep SubsurfaceMSVNVSEEVKKEIFDLISIPGMEIEDIAKKVSLDYDTIIKILSDEYLKNNLDYGRRLCCRF*
Ga0114925_1126655123300009488Deep SubsurfaceMTEEVSEDVKKEVFRLISIPGIEIDDIVKQLNLDYDKVMKILENEYLKANLDYGRRLCCRF*
Ga0114930_1044669813300009499Deep SubsurfaceMTVEVSEEVKKEIFQLIATPGIEIEDISKKTNLDHDTILKILSEEYLRCNLDFGRSLCCR
Ga0114946_1031152723300009504SedimentMKELSEDIKKKIFELITVPGIEIKEISETLNIDYDTVMEILCNEYFKHNLDHGRRLCCR*
Ga0114919_1009077513300009529Deep SubsurfaceMTEEISEEIKKEIFQLICQPGIEIEDIAKSVNLDFDKVMEILTNEYSRNDLDYGRRLCCRF*
Ga0114923_1005784923300009788Deep SubsurfaceMTEEVSEEVKKQIFKLISTPGVQIEDIVEKVNLDYDKVMNILEDEYLRHNLDYGRRLCCRF*
Ga0114923_1022538333300009788Deep SubsurfaceMKSEISEEVEKEIFKLISTPGVEIEDIIKKLNLDYDTVMNILSEEFLKHDFNQGRRLCCRF*
Ga0114923_1039818823300009788Deep SubsurfaceMTEEVSEEIKKEILALISIPGVEIEEIAEKLNLNYDKVMKILSDEYLKYNLDYGRRMCCRF*
Ga0114923_1047101023300009788Deep SubsurfaceMVAEVSEEVKKEIFKLICTPGIEIEDIAKKVELNYDTVMKILSDEYLKNNLDYGRRLCCRF*
Ga0114923_1117655023300009788Deep SubsurfaceMTEEVSEEIKKEIFDLISTPGVEIEEIAEKLNLDYDKVMKILSDEYLKHNLDYGRRMCCRF*
Ga0136851_1138112623300010413Mangrove SedimentMTEVSEEIKKKIFELIIVPGIEIQEIAEKVNLDFDTVMEVLSDEYLRHNLDYGRRLCCR*
Ga0114922_1006240963300011118Deep SubsurfaceMTEEVSEEIKKEILELISIPGVEIEEIAEKLNLDHDKVMKILSDEYFKHNLDHGRRMCCRF*
Ga0114922_1034544123300011118Deep SubsurfaceMTTEVSEEVKKEIFELISTPGTEIVDIAEKLNLEYDKVMDILANEYLKNNLDHGRKLCCRF*
Ga0114922_1088108323300011118Deep SubsurfaceMTLEVSEEVKKEIFQLIATPGIEIEDISKKVNLDCETILNILSEEYFKCNLDHGRRLCCRF*
Ga0153774_100732483300012002Saline Lake Microbial MatMSEEVPEEIKKKIFKMISTPGTDIEEIANEVNLEFDQVMEILSEEYLRSNLDYGRRLCCRF*
Ga0164321_1040269813300014903Marine SedimentMTEEVSEEIRNQIFELISTPGIELEEIAEKVNLDYEKVKEILTDECLRHNLDYGRRLCCR
Ga0180437_1003286153300017963Hypersaline Lake SedimentMSLEVSEEIKQTIFRLISEPGVEIEDIVKKVNLDRDTVMKILSDEYTRNDLDQGRRLCCR
Ga0180437_1028365623300017963Hypersaline Lake SedimentMVEEVTEDIKKEIFKLISTPGIEIQDIATKLNIDYDRVMKILSDEYLKHNLDYGRRMCCR
Ga0180437_1032341023300017963Hypersaline Lake SedimentMTEEVSEEIRNQIFELICTPGIEIEEIAEKVNLDYDKVKEILTDECLRHNLDYGRRLCCR
Ga0180437_1068768313300017963Hypersaline Lake SedimentMTQDISEETKKQIFKLISTPGIEIKDIAEKLNLDYDQVMKILADEYLKHNLDYGRRMCCR
Ga0180438_1002891163300017971Hypersaline Lake SedimentMSLEVSEEIKQTIFRLISEPGVEIEDIIKKVNLDLNTVMKILSDEYTRNDLDQGRRLCCR
Ga0180438_1015799743300017971Hypersaline Lake SedimentEEVSEEIRNQIFELICTPGIEIEEIAEKVNLDYDKVKEILTDECLRHNLDYGRRLCCR
Ga0180436_1092083823300017990Hypersaline Lake SedimentMSSEVSEEIKQTIFRLISEPGVEIEDIVKKVNLDRDTVMKILSDEYTRNDLDQGRRLCCR
Ga0180434_1052514023300017991Hypersaline Lake SedimentMSLEVSEEIKQTIFRLISEPGVEIEDIVKKVNLDRDTVMKILSDEYTKNDLDHGRRLCCR
Ga0180433_10000907453300018080Hypersaline Lake SedimentMSSEVSEEIKQMIFRLISKPGMEIEDIVEKVNLDRDTVMKILSDEYTKNDLDHGRRLCCR
Ga0180433_1007603923300018080Hypersaline Lake SedimentMTEKRVQVSEEQKKEIFELISTAGVEIKDIVKKTGIDYDTVMKILSEEYLKNNLDFGRRLCCRY
Ga0190360_117300023300021468Hydrothermal Vent Microbial MatFKLISTPGIEIDDIAQKVKLDTETILKLLSDEYLRNNLDHGRRLCCRF
Ga0190360_127489713300021468Hydrothermal Vent Microbial MatMNKENISEELKKEIFELIAKPGIEIEDISKKTGLDYEIIMKILSDEYLKYNLD
(restricted) Ga0233409_1013311423300022938SeawaterMTEEVSEDVKKEVFRLISIPGIEIDNIAKQLNLAYDKVMKILENEYLRANLDQ
Ga0209978_1010771323300024263Deep SubsurfaceMNSDVDEETKKEIFKLISTPGIEIEDIVERVNLDYDKVMKILSDEYLRNNLDYGRRLCCR
Ga0209978_1050516723300024263Deep SubsurfaceMNSEVSEEVKKEIFNLISTPGIEIEDIIKKVKLNYDTILNILSEEYFRCNLDHGRRLCCK
Ga0209976_1000390443300024265Deep SubsurfaceMTEEVSEEIRNQIFKLISTPGIELEEIAEKVNLDYDKVKEILTDECLRHNLDYGRRLCCR
Ga0209976_1003910623300024265Deep SubsurfaceMTEEVSEEIKKEIFDLISTPGVEIEEIAEKLNLDYDKVMKILSDEYLKHNLDYGRRMCCR
Ga0209976_1021465933300024265Deep SubsurfaceMKSEISEEVEKEIFKLISTPGVEIEDIIKKLNLDYDTVMNILSEEFLKHDFNQGRRLCCR
Ga0209976_1034653123300024265Deep SubsurfaceMTEEVSEEVKKQIFKLISTPGVQIEDIVEKVNLDYDKVMNILEDEYLRHNLDYGRRLCCR
Ga0209977_1000286863300024432Deep SubsurfaceMPAEISEDVKKQIFKMISTPGVEISDIAKKLSLDYDKVVEILADEYLKHNLDYGRRMCCR
Ga0209977_1001205023300024432Deep SubsurfaceMTVEVSEEVKKEIFQLIATPGIDIEEISKKINLDQDTILKILSEEYFKCNLDHGRRLCCR
Ga0209977_1004972923300024432Deep SubsurfaceMISDVNEETKKEIFRLISTPGIEIKDIVERVNLDYDKVMKILSDEYLRNNLDYGRSLCCR
Ga0209977_1005878523300024432Deep SubsurfaceMSDDVSEDVKKEIFRLICQPGTEIEDIAKILNLDNEKIMEILSNEYLKTNLDHGRRLCCR
Ga0209977_1028926613300024432Deep SubsurfaceMTEEVSEEIRNQIFELISTPGIELEEIAEKVNLDYDKVKEILTDECLRHNLDYGRRLCCR
Ga0209977_1041243113300024432Deep SubsurfaceMTEEVSEDVKKEIFRLISIPGIEIDDIVKQLNLDYDKVMKILENEYLRANLDYGRRLCCR
Ga0209986_1022202513300024433Deep SubsurfaceMTEEISEEIKKEIFQLICQPGIEIEDIAKSVNLDFDKVMEILTNEYSRNDLDYGRRLCCR
Ga0256868_1002592613300027811SoilMEGKVSEDTKKKIFQLISTPGIEIEEIAKIVNLDYDIVMDMLANEYLRTNFNYGRRLCCR
Ga0209635_1004116313300027888Marine SedimentMTIEITEEIKKKICQLISTPANDIEEIAKKVNLDYDTVKEILSEEYYKCNLEYGRRLCCR
Ga0209635_1012746913300027888Marine SedimentMSIEITEKVKKEIFKLISTPGVEIEEIAEKVNLDCKIVMKILEDEYFQYDLNHGRRLCCR
Ga0209635_1014157133300027888Marine SedimentMNSDVNEETKKEIFRLISTPGIEIEDIVERVNLDYDKVMKILSDEYLRNNLDYGRRLCCR
Ga0209635_1015200033300027888Marine SedimentMSLEVSEEVKKEIFQLIATPGIEIEDISKKTNLDQDTILKILSEEYLKCNLDHGRRLCCR
Ga0209635_1041779023300027888Marine SedimentMMTSEINENIKQEIFRLICIPGTCIEEIAKKLNLDYDKVKEILSEEFLKHNLDHGRRLCCRF
Ga0209635_1064983513300027888Marine SedimentMTEEVSEEIKKEIFTLISTPGVEIEDIVEKLNLDYDKVMKILENEYSRANLDQGRSLCCR
Ga0209635_1067220123300027888Marine SedimentMTEEISDQIKKEIFKLISTPGIEIDEIAEKVNSAYNSNLNYDKVMNILSEEFFKHNLDYGRRLCCRF
Ga0209635_1096939723300027888Marine SedimentMVEEITEDIKKEIFKLISTPGIEIQDIATKLNIEYDRVMKILSDEYLKHNLDYGRRMCCR
Ga0209636_1079131913300027893Marine SedimentMSREITEEIKNEIFKLISTPGVEIEEIAEKVNLDCKIVMKILEDEYFRHNLDYGRRLCCR
Ga0209427_1001715163300027901Marine SedimentMTEEVSEEIKKVIFQLISTPGVEIQDIAEKLNLDYEKVMNVLSDEYLKHNLDYGRRMCCR
Ga0209427_1001726573300027901Marine SedimentMCMEFSEEVKKKICELISKPGITIEDISKEVNLDYDTIMRILSEEYFKYNLDYGRRLCCR
Ga0209427_1002056073300027901Marine SedimentMSSEISEQIKEEIFKLISTPGIEIEEISKKVNLDLETVLSILSEEYFKCNLDHGRRLCCR
Ga0209427_1011262723300027901Marine SedimentMTEEVSEEIKKQIFELITTPGVEIEDIVIKLNLDYDKVMDILANEYLRNNLDHGRRLCCR
Ga0209427_1022263723300027901Marine SedimentMTEEVSEDIKKEIFILISTPGIEIQDIAEKLNLDYDRVMNILADEYFKHNLDYGRRMCCR
Ga0209427_1068116413300027901Marine SedimentMSIEITEEVKKEIFNLISTPGVEIEEIAKKVNLDCKIVMKILEDAFERHNLDYGRRLCCR
Ga0209427_1090222623300027901Marine SedimentMTEEVSEEIRNQIFELICTPGIEIEEIAEKVNLDYDKVKEILTDECLRNNLDYGRRLCCR
Ga0209536_10046081313300027917Marine SedimentMTEEVSEEIKKEIFELITIPGVEIKDIVEKLNLDYDKVMKIIENEYSRANLDQGRSLCCR
Ga0209536_10097076623300027917Marine SedimentMTEEVSEEIKKEIFELISTPGVEIEDIVEKLNLDYDKVMKIIENEYSRANLDQGRRLCCR
Ga0209536_10175242823300027917Marine SedimentMTEEVSEEIKKEIFELISMPGVEIQDIAEKLNLDYEKVMNVLSDEYLKHNLDYGRRMCCR
Ga0315554_102831623300031255Salt Marsh SedimentMNSEISEEVKKKIFDLISTPGIEIEDIIEKVNLDCDTIMKILSEEYLKHDLNHGRRLCCR
Ga0315554_123384813300031255Salt Marsh SedimentMTEEVSEDIKKEIFTLISTPGIEIQDIAEKLNLDYDRVMNILSDEY
Ga0307420_123402413300031281Salt MarshMSSEISEEVKKKIFDLISTPGIEIEDIIEKVNLDCDTIMKILSEEYLKCDLNHGRRLCCR
Ga0307426_107209333300031359Salt MarshMTEEVSEDIKKEIFKLISTPGIEIQDIAEKLNLDYDRVMNILADEYYKHNLDYGRRMCCR
Ga0307424_105796713300031511Salt MarshMNSEISEEVKKKIFDLISTPGIEIEDIIEKVNLDCDTIMKILSEEYLKHDLN
Ga0315542_102352613300031552Salt Marsh SedimentMATEISKEIKSKIFKLISTPGIEIEDIVQEVNLDYDTVMDILTNEYLRSDLTQGRRLCCR
Ga0315553_1007108443300031652Salt Marsh SedimentMSSEVKKKIFDLISTPGIEIEDIIEKVNLDCDTIMKILSEEYLKCDLNHGRRLCCRF
Ga0315553_1013175733300031652Salt Marsh SedimentMTLEVSEEVKKEIFQLISTPGIEIEDISKKTNLDSETILNILSEEYLKCDLDHGRRLCCR
Ga0315550_112579023300031653Salt Marsh SedimentMTEEVTEEIKKEILQLISTPGIQIEDIVEKMNLDYDKVMKILSDEYLKHNLDYGRRMCCR
Ga0315293_1002093963300031746SedimentMEAKVSEETKQKIFQLISTPGVEIEEIVKIVNLDYDIVMDILANEYLRTNLNYGRRLCCR
Ga0315296_1067436223300032020SedimentMSSEISEQVKKEIFELISTPGIEIEDIAKKVNLDYDTVMKILSEEYLRTDLNHGRRLCCR
Ga0315546_104124913300032029Salt Marsh SedimentMSSEISEEVKKEIFDLISTPGIEIEDISEKVNLDCDTIMNILSEEYLKHDLNHGRRLCCR
Ga0315295_1037476523300032156SedimentMESKVSEEIKKKIFQLISTPGVEIEEIVKIVNLEYDIVIDILANEYLRTNLNYGRRLCCR
Ga0299912_1001347473300033489SoilMEGKVSEDTKKKIFQLISTPGIEIEEIAKIVNLDYDIVMDMLANEYLRTNLNYGRRLCCR


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