Metagenome / Metatranscriptome Family F089925

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F089925
Family Type	Metagenome / Metatranscriptome
Number of Sequences	108
Average Sequence Length	97 residues
Representative Sequence	MPSSISDSKSTALAYAKTLVGICVILMIAVEISSVYLLKHDSATYARISRQYDEAAKMRPARPGEPPSVLMVGNSLLLHGVELDRLQALTSSRM
Number of Associated Samples	78
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	85.71 %
% of genes near scaffold ends (potentially truncated)	92.59 %
% of genes from short scaffolds (< 2000 bps)	87.96 %
Associated GOLD sequencing projects	71
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.38

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (97.222 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (43.518 % of family members)
Environment Ontology (ENVO)	Unclassified (39.815 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (48.148 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 64.75% β-sheet: 0.00% Coil/Unstructured: 35.25%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.38
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.38
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF03062	MBOAT	37.96
PF13807	GNVR	7.41
PF13614	AAA_31	4.63
PF01656	CbiA	0.93
PF02357	NusG	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG0250	Transcription termination/antitermination protein NusG	Transcription [K]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	97.22 %
Unclassified	root	N/A	2.78 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	97.22 %
Unclassified	root	N/A	2.78 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	97.22 %
Unclassified	root	N/A	2.78 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	88.89 %
Unclassified	root	N/A	2.78 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	40.74 %
Unclassified	root	N/A	2.78 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	40.74 %
Unclassified	root	N/A	2.78 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	40.74 %
Unclassified	root	N/A	2.78 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	40.74 %
Unclassified	root	N/A	2.78 %
unclassified Acidobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae	0.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	40.74 %
Unclassified	root	N/A	2.78 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001089\|JGI12683J13190_1025593	All Organisms → cellular organisms → Bacteria → Acidobacteria	516	Open in IMG/M
3300001593\|JGI12635J15846_10810881	All Organisms → cellular organisms → Bacteria → Acidobacteria	536	Open in IMG/M
3300002245\|JGIcombinedJ26739_100826304	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	807	Open in IMG/M
3300002886\|JGI25612J43240_1030337	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	793	Open in IMG/M
3300002910\|JGI25615J43890_1026668	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	954	Open in IMG/M
3300002914\|JGI25617J43924_10025358	All Organisms → cellular organisms → Bacteria	2078	Open in IMG/M
3300002914\|JGI25617J43924_10035772	All Organisms → cellular organisms → Bacteria	1783	Open in IMG/M
3300005187\|Ga0066675_10572161	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	848	Open in IMG/M
3300005450\|Ga0066682_10330580	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	983	Open in IMG/M
3300005557\|Ga0066704_10041699	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	2861	Open in IMG/M
3300005557\|Ga0066704_10878535	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	555	Open in IMG/M
3300005586\|Ga0066691_10552757	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	686	Open in IMG/M
3300005598\|Ga0066706_10031738	All Organisms → cellular organisms → Bacteria	3380	Open in IMG/M
3300006052\|Ga0075029_100616429	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	726	Open in IMG/M
3300007258\|Ga0099793_10187712	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	988	Open in IMG/M
3300007265\|Ga0099794_10222450	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	970	Open in IMG/M
3300007265\|Ga0099794_10606669	All Organisms → cellular organisms → Bacteria → Acidobacteria	580	Open in IMG/M
3300009012\|Ga0066710_100013840	All Organisms → cellular organisms → Bacteria → Acidobacteria	8444	Open in IMG/M
3300009088\|Ga0099830_10281744	All Organisms → cellular organisms → Bacteria	1323	Open in IMG/M
3300009090\|Ga0099827_10820174	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	805	Open in IMG/M
3300010333\|Ga0134080_10682409	All Organisms → cellular organisms → Bacteria → Acidobacteria	508	Open in IMG/M
3300011269\|Ga0137392_10436025	All Organisms → cellular organisms → Bacteria → Acidobacteria	1088	Open in IMG/M
3300011269\|Ga0137392_11074296	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	660	Open in IMG/M
3300011270\|Ga0137391_10732036	All Organisms → cellular organisms → Bacteria → Acidobacteria	820	Open in IMG/M
3300011271\|Ga0137393_10705200	All Organisms → cellular organisms → Bacteria → Acidobacteria	864	Open in IMG/M
3300012096\|Ga0137389_10661896	All Organisms → cellular organisms → Bacteria → Acidobacteria	897	Open in IMG/M
3300012189\|Ga0137388_12042663	All Organisms → cellular organisms → Bacteria → Acidobacteria	501	Open in IMG/M
3300012203\|Ga0137399_10563394	All Organisms → cellular organisms → Bacteria → Acidobacteria	957	Open in IMG/M
3300012205\|Ga0137362_10127205	All Organisms → cellular organisms → Bacteria → Acidobacteria	2165	Open in IMG/M
3300012205\|Ga0137362_10834107	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	789	Open in IMG/M
3300012205\|Ga0137362_10906805	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	753	Open in IMG/M
3300012205\|Ga0137362_11483727	All Organisms → cellular organisms → Bacteria → Acidobacteria	565	Open in IMG/M
3300012351\|Ga0137386_10762860	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	695	Open in IMG/M
3300012361\|Ga0137360_11417387	All Organisms → cellular organisms → Bacteria → Acidobacteria	598	Open in IMG/M
3300012362\|Ga0137361_10120833	All Organisms → cellular organisms → Bacteria → Acidobacteria	2308	Open in IMG/M
3300012393\|Ga0134052_1211547	All Organisms → cellular organisms → Bacteria → Acidobacteria	559	Open in IMG/M
3300012683\|Ga0137398_10830877	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	646	Open in IMG/M
3300012685\|Ga0137397_10778099	All Organisms → cellular organisms → Bacteria → Acidobacteria	710	Open in IMG/M
3300012927\|Ga0137416_10275773	All Organisms → cellular organisms → Bacteria → Acidobacteria	1384	Open in IMG/M
3300012927\|Ga0137416_10338992	All Organisms → cellular organisms → Bacteria → Acidobacteria	1257	Open in IMG/M
3300012927\|Ga0137416_10849267	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	810	Open in IMG/M
3300012927\|Ga0137416_10952479	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	765	Open in IMG/M
3300012927\|Ga0137416_11512083	All Organisms → cellular organisms → Bacteria → Acidobacteria	610	Open in IMG/M
3300012929\|Ga0137404_10837307	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	837	Open in IMG/M
3300012929\|Ga0137404_11992673	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	541	Open in IMG/M
3300012944\|Ga0137410_10551732	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	947	Open in IMG/M
3300012957\|Ga0164303_11575445	All Organisms → cellular organisms → Bacteria → Acidobacteria	500	Open in IMG/M
3300015052\|Ga0137411_1196921	All Organisms → cellular organisms → Bacteria → Acidobacteria	576	Open in IMG/M
3300015054\|Ga0137420_1052170	All Organisms → cellular organisms → Bacteria → Acidobacteria	1634	Open in IMG/M
3300015054\|Ga0137420_1073047	All Organisms → cellular organisms → Bacteria → Acidobacteria	1090	Open in IMG/M
3300015054\|Ga0137420_1142259	All Organisms → cellular organisms → Bacteria → Acidobacteria	1594	Open in IMG/M
3300015054\|Ga0137420_1142260	All Organisms → cellular organisms → Bacteria → Acidobacteria	732	Open in IMG/M
3300015054\|Ga0137420_1411931	All Organisms → cellular organisms → Bacteria → Acidobacteria	1090	Open in IMG/M
3300015241\|Ga0137418_11066465	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	578	Open in IMG/M
3300017927\|Ga0187824_10043220	All Organisms → cellular organisms → Bacteria → Acidobacteria	1379	Open in IMG/M
3300018433\|Ga0066667_11347035	All Organisms → cellular organisms → Bacteria → Acidobacteria	625	Open in IMG/M
3300020170\|Ga0179594_10341464	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	568	Open in IMG/M
3300020199\|Ga0179592_10312632	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	696	Open in IMG/M
3300020579\|Ga0210407_10193330	All Organisms → cellular organisms → Bacteria	1579	Open in IMG/M
3300020579\|Ga0210407_11130330	All Organisms → cellular organisms → Bacteria → Acidobacteria	592	Open in IMG/M
3300020581\|Ga0210399_10470121	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1046	Open in IMG/M
3300021168\|Ga0210406_10323473	All Organisms → cellular organisms → Bacteria → Acidobacteria	1249	Open in IMG/M
3300021168\|Ga0210406_11289880	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	527	Open in IMG/M
3300021170\|Ga0210400_10509841	All Organisms → cellular organisms → Bacteria → Acidobacteria	993	Open in IMG/M
3300021403\|Ga0210397_10460318	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	959	Open in IMG/M
3300021405\|Ga0210387_10803361	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	831	Open in IMG/M
3300021406\|Ga0210386_10350774	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1269	Open in IMG/M
3300021406\|Ga0210386_11162849	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	653	Open in IMG/M
3300021420\|Ga0210394_10806030	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	820	Open in IMG/M
3300021432\|Ga0210384_10359380	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1311	Open in IMG/M
3300021432\|Ga0210384_11611997	All Organisms → cellular organisms → Bacteria → Acidobacteria	554	Open in IMG/M
3300021474\|Ga0210390_10987721	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	688	Open in IMG/M
3300021478\|Ga0210402_10035243	All Organisms → cellular organisms → Bacteria	4339	Open in IMG/M
3300021478\|Ga0210402_11099275	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	722	Open in IMG/M
3300021478\|Ga0210402_11740922	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	549	Open in IMG/M
3300021479\|Ga0210410_10271752	All Organisms → cellular organisms → Bacteria → Acidobacteria	1521	Open in IMG/M
3300021479\|Ga0210410_10297649	All Organisms → cellular organisms → Bacteria → Acidobacteria	1448	Open in IMG/M
3300021479\|Ga0210410_10619617	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	960	Open in IMG/M
3300021479\|Ga0210410_11666327	All Organisms → cellular organisms → Bacteria → Acidobacteria	531	Open in IMG/M
3300021559\|Ga0210409_11146657	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	652	Open in IMG/M
3300024251\|Ga0247679_1095047	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	505	Open in IMG/M
3300024330\|Ga0137417_1038937	All Organisms → cellular organisms → Bacteria → Acidobacteria	1664	Open in IMG/M
3300024330\|Ga0137417_1210177	All Organisms → cellular organisms → Bacteria → Acidobacteria	1253	Open in IMG/M
3300024330\|Ga0137417_1211418	All Organisms → cellular organisms → Bacteria → Acidobacteria	1240	Open in IMG/M
3300024347\|Ga0179591_1014660	All Organisms → cellular organisms → Bacteria	3547	Open in IMG/M
3300026319\|Ga0209647_1086022	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1538	Open in IMG/M
3300026497\|Ga0257164_1051568	All Organisms → cellular organisms → Bacteria → Acidobacteria	661	Open in IMG/M
3300026551\|Ga0209648_10292369	All Organisms → cellular organisms → Bacteria → Acidobacteria	1173	Open in IMG/M
3300026557\|Ga0179587_10634197	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	703	Open in IMG/M
3300027575\|Ga0209525_1042747	All Organisms → cellular organisms → Bacteria → Acidobacteria	1111	Open in IMG/M
3300027603\|Ga0209331_1144686	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	566	Open in IMG/M
3300027671\|Ga0209588_1118481	All Organisms → cellular organisms → Bacteria → Acidobacteria	848	Open in IMG/M
3300027674\|Ga0209118_1034983	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1527	Open in IMG/M
3300027738\|Ga0208989_10255600	All Organisms → cellular organisms → Bacteria → Acidobacteria	570	Open in IMG/M
3300027748\|Ga0209689_1085852	All Organisms → cellular organisms → Bacteria → Acidobacteria	1655	Open in IMG/M
3300027857\|Ga0209166_10716592	All Organisms → cellular organisms → Bacteria → Acidobacteria	503	Open in IMG/M
3300027862\|Ga0209701_10138287	All Organisms → cellular organisms → Bacteria → Acidobacteria	1496	Open in IMG/M
3300028138\|Ga0247684_1057311	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	632	Open in IMG/M
3300030854\|Ga0075385_11586476	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	698	Open in IMG/M
3300031128\|Ga0170823_14349927	All Organisms → cellular organisms → Bacteria → Acidobacteria	1655	Open in IMG/M
3300031231\|Ga0170824_114438539	All Organisms → cellular organisms → Bacteria	2735	Open in IMG/M
3300031720\|Ga0307469_10042064	All Organisms → cellular organisms → Bacteria	2787	Open in IMG/M
3300031754\|Ga0307475_10302122	All Organisms → cellular organisms → Bacteria → Acidobacteria	1285	Open in IMG/M
3300031823\|Ga0307478_10412385	All Organisms → cellular organisms → Bacteria → Acidobacteria	1120	Open in IMG/M
3300031962\|Ga0307479_11811301	All Organisms → cellular organisms → Bacteria → Acidobacteria	562	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	98.15%
Aquatic	Environmental → Aquatic	1.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	98.15%
Freshwater	Environmental → Aquatic → Freshwater	0.93%
Sediment	Environmental → Aquatic → Sediment	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	91.67%
Loam	Environmental → Terrestrial → Soil → Loam	6.48%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.93%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	47.22%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	30.56%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	13.89%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.48%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.93%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	43.52%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	25.00%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	7.41%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.48%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	6.48%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.70%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.85%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.85%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.93%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.93%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001089	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M3	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002886	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm	Environmental	Open in IMG/M
3300002910	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm	Environmental	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012393	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300015052	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015054	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300017927	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_4	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300024251	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK20	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300024347	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300026319	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)	Environmental	Open in IMG/M
3300026497	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-08-B	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027575	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O1 (SPAdes)	Environmental	Open in IMG/M
3300027603	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027671	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)	Environmental	Open in IMG/M
3300027674	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes)	Environmental	Open in IMG/M
3300027738	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M1 (SPAdes)	Environmental	Open in IMG/M
3300027748	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 (SPAdes)	Environmental	Open in IMG/M
3300027857	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028138	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK25	Environmental	Open in IMG/M
3300030854	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OB2 SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12683J13190_10255931	3300001089	Forest Soil	MRSSVFDSKSIALAYAKALVGICAILIIVVEISSIYLLKHHSVTYARVSRQYDEAVKMRPAGPGEPPCVLMVGNSLLLHGVELDRLRALTSGSMRI
JGI12635J15846_108108811	3300001593	Forest Soil	MRSSVFDSKSIALAYAKALVGICAILIIVVEISSIYLLKHHSVTYARVSRQYDEAVKMRPAGPGEPPCVLMVGNSLLLHGVELDRLRALTSD
JGIcombinedJ26739_1008263042	3300002245	Forest Soil	MPSSISDSKSRAIAHAKALAAICALLILVFEIASVYLLNHRSATYARISRQYGEALTMRPAGAGEPPSVLMVGNSLLLHGVQLNR
JGI25612J43240_10303371	3300002886	Grasslands Soil	MPSSTSGSKSKAMTYAKALAAICAALILMFELASIYLLNHRSATYARISRQYDEALKIRPASAGEPPNVLMVGNSLLLHGVQ
JGI25615J43890_10266682	3300002910	Grasslands Soil	MPSSTSGSKSKAMMYAKALAAICAVLILMFELASIYLLNHRSATYARISRQYDAALKIRPASAGEPPSVLMVGNSLLLHGVQVNRLQEMTSSSMRIYPIFLEA
JGI25617J43924_100253581	3300002914	Grasslands Soil	MHSSISDSKSRALTYAKVLAGICAILIIAIEIFSAYLLKHHSVTYARISRQYEAAVKIRPSGPGEPASVLMVGNSLLLHGVEMNRLQALTFNSMRINPIFLEATGYYDWLYTLER
JGI25617J43924_100357721	3300002914	Grasslands Soil	MPSSTSDSKSTAISCAKTLVGITALLIIALEISSAYLLKHKSVTYARISRQYEGALEMRPAQPGAPPSVLMVGNSLLLHGVQL
Ga0066675_105721612	3300005187	Soil	MHSSISDSKSKAITYAKMLVAVCALLVIVFELSSIYVLRHRSGTYARISKQYNEALSVRPSGPSEPPSVLIVGNSLLLHGIALDRLNALTSSRMRVYPIFLEATG
Ga0066682_103305801	3300005450	Soil	MHSSISDSKSKAIAYAKTLVAVCALLVIVFELSSIYVLRHRSGTYARISKQYNEALSVRPSGPSEPPSVLIVGNSLLLHGIALDRLNALTSSRMRVYPIFLEAT
Ga0066704_100416993	3300005557	Soil	MKDNSKFSALAYAKALIGICAILVIAFEFSASCLLKHHSPTYARISRQYEEALKTRPSRPGEPPSVLMVGNSLLLHGVELDRLKALT
Ga0066704_108785351	3300005557	Soil	MRLSISDSKSTALTYAKVLAGICAILMIGIEISSIYLLKHDSLTYARVSRQYDEAVKTRPAGPGEPPCVLMVGNSLLL
Ga0066691_105527571	3300005586	Soil	MPSSISDSKSRCLLHCKVLAGICASLLAVIEMSAIYLLNHHSPTYARISRQYSEAVKIRPAGPGEPANVLMVGNSLLLHGVELDRLRALTSARMNIYPIFLEATGFYDWMYALRGL
Ga0066706_100317383	3300005598	Soil	MRSSIFDSKSKAFGYAKALAAICALLIVVLEVSSVYLLKHRSGTYERISKQYNEARVARPGAPGEPPSVLIVGNSLLLRGIELDRLNALTASSMHIYPIFL
Ga0075029_1006164292	3300006052	Watersheds	MPSSISGSEPKAIAYAKALAAICALLILVFEIASVYLLNHQSATYARISRQYGEALAMRPAGAGEPPSVLMVGNSLLLHGVQLDRLQEMTSSRMRIYPIFLEATGYYDWLYALH
Ga0099793_101877121	3300007258	Vadose Zone Soil	MTYAKALAAICAALILMFELASIYLLNHRSATYARISRQYDEALKIRPASAGEPPNVLMVGNSLLLHGVQVNRLQEMTSSSMRIYPIFLEATG
Ga0099794_102224501	3300007265	Vadose Zone Soil	MRLSISDSKSTALTYAKVLLGICAILMIGIEISSIYLLKHDSLTYARVSRQYDEAVKTRPAGPGEPPCVLMVGNSLLLQGVKVDRLQ
Ga0099794_106066692	3300007265	Vadose Zone Soil	LAGICAIFIIAFEISAVYLLKHLSLTYKRISQQYDEAIKMHPCGPGEPPCVLMVGNSLLIYGVRLDQLRVMTSSKMNIYPIFLE
Ga0066710_1000138401	3300009012	Grasslands Soil	MRSSTSGSNGTALSYAKRLAGICAIFIVVFEISAVYLLKHLSLTYKRISEQYDEAVTMHPCGPGEPPCVLMVGNSLLMYGVKLDQLRVMTSAKMNIY
Ga0099830_101814072	3300009088	Vadose Zone Soil	MRDSKSTALAYAKALVGICAILVIAIEISSAYLLQHHSATYARVSRQYDEAVKMRPARPGEPPCVLM
Ga0099830_102817442	3300009088	Vadose Zone Soil	MTYANVLAGICAILIIAIEIFSAYLLKHHSVTYARISRQYEAAVKIRPSGPGEPASVLMVGNSLLLHGVEMNRLQALTFNSM
Ga0099827_108201742	3300009090	Vadose Zone Soil	LAGICALLIIALEVSSGYLLKHHSVTYVRISRQYDEAVKVRPAGPGELPSVLMVGNSLLLHGVELDRLQALTSDRMRIYPIFLEATGYYDWLYALRRLFRE
Ga0134080_106824092	3300010333	Grasslands Soil	MHSSISDSKSKAIAYAKTLVAVCALLVIAFELSSIYVLKHRSGTYARISKQYNEALSVRPSGPSEPPSVLIVGNSLLLHGIALDRLNALTSSRMRVYPIFLEATG
Ga0137392_104360252	3300011269	Vadose Zone Soil	VAYAKALLGICALIIIGFETSSCYLLNHFSLTYSRICRQYDQAVTTRHAGPGEPPSVLMVGNSLLLHGIQLDRLRSLTSARMQIYPVFLEATGYYDWL
Ga0137392_110742962	3300011269	Vadose Zone Soil	MRSFISDSKSQAITYAKVLAGICVILLIAIELSAAYLLKHDSATYARISQQYDEAVKMHPSGYGGPPGVLMVGNSLLLHGVELDRLREMTGSRMRIY
Ga0137391_107320361	3300011270	Vadose Zone Soil	MPSSISDSKTRALAHAITLVGICAVLIIALEISSVYLLRHNSATYARISRQYDEAVKMRPAGPDEPPSVLLVGNSLLLH
Ga0137393_107052002	3300011271	Vadose Zone Soil	VFQGTISMPSSISDSKSTALTYAKTLVGICVLLMIAVEISSVYLLKHDSATYARISRQYDEAAKMRPARAGEPPSVLMVGNSLLLHGVELDRLQALTS
Ga0137389_106618962	3300012096	Vadose Zone Soil	MKNNPKSIPLAHTKVLVGICAILVIAFEFAASYLLKHHSVTYTRISRQYEEALKIRPARPGETPSVLMVGNSLLLHGVELDRLKALTSTSMQIYPIF
Ga0137388_120426631	3300012189	Vadose Zone Soil	VLSSNSDSKPTALAYAKALVGICAILIIALEISSVYLLKHHSVTFARISRQYDEALKMRPAGPGEPQCVLMVGNSLLLHGVQLDRLQA
Ga0137399_105633941	3300012203	Vadose Zone Soil	MRSSVFDSKSLALAYAKALAGICAILIIAVEISSIYLLKHHSVTYARVSRQYDEAVKMRPAGPGEPPCVLMVGNSLLLHGVELNRLRALTSGSMR
Ga0137362_101272052	3300012205	Vadose Zone Soil	MPSSISDSKSTALAYAKTLVGICVILMIAVEISSVYLLKHDSATYARISRQYDEAAKMRPARPGEPPSVLMVGNSLLLHGVELDRLQALTSSRMRIHPIFLEA
Ga0137362_108341072	3300012205	Vadose Zone Soil	MPLSISDSKSTALTYAKVLAGICAILMIAIEISAIYLLKHDSLTYARVSRQYDEAVKTRPAGPGEPPCVLMVGN
Ga0137362_109068052	3300012205	Vadose Zone Soil	MRLSISDSKSTALAYAKILVGICAVLMIAIEISSIYLLKHDSLTYARVSRQYDEAVKTRPAGPGEPPCVLMVGNSLLLQGVKVDRLQ
Ga0137362_114837271	3300012205	Vadose Zone Soil	MRSSVFDSKSLALAYAKALAGICAILIIAVEISSIYLLKHHSATYARVSRQYDEAVKMRPAGPGEPPCVLMVGNSLLLHGVELNRLRALTSGSMRIYPVFLEATGYYDWLYG
Ga0137386_107628601	3300012351	Vadose Zone Soil	MRSSTSASKPAALAYAKALAGACLILILGLEIGSDYLLKHDSGTYARISQQYEQALKIRPAGNGEPTSVLMVGNSLLLRGVEMDRLKALTSSRMRIYPIFL
Ga0137360_114173871	3300012361	Vadose Zone Soil	MPSSISDSKSTALTYAKTLVGICVMLMIAVEISSVYLLKHDSATYARISRQYDEAAKMRPARPGEPPSVLMVGNSLLLHGVELD
Ga0137361_101208331	3300012362	Vadose Zone Soil	MQGTSKSIALAYSKSLIGICVILVIALELSSGYLLKHHSVTYARISRQYEEALTIRPAGAGDPPRVLMVGNSLLLHGVELDR
Ga0134052_12115471	3300012393	Grasslands Soil	MPSSISGSRAKAVTYAKGLVSICALLTVVFEISAVYLLKHRSPTYGRISKQYNDARTIHPSGPNEPPSVLMVGNSLLLHGVELDRLNALTSSQMRVYPIFLE
Ga0137398_101942011	3300012683	Vadose Zone Soil	MHSSIFDSKSQAITYAKTLVAVCAVLIIVFELSSIYLLKHRSGTYARISRQYDEALSVRPSGQGEPPSVLMVGNSLLLHGIELDRLNALTSSRMRVYPIFLEATGYYDWFYALQGLFRQ
Ga0137398_108308772	3300012683	Vadose Zone Soil	MTYAKALAGICAILIIAIEIFSGYLLKRHSVTYARISRQYDAAVKIRPAGPGEPASVLMVGNSLLLHGVEMNRLQAVQFDSVQ*
Ga0137397_107780992	3300012685	Vadose Zone Soil	MPSSISDSKSTALAYAKTLVGICVILMIAVEISSVYLLKHDSATYARISRQYDEAAKMRPARPGEPPSVLMVGNSLLLHGVELDRLQALTSSRM
Ga0137416_102757732	3300012927	Vadose Zone Soil	MRSSVFDSKSIALAYAKALVGICAILIIAVEISSIYLLKHHSVTYARVSRQYDEAVKMRPARPGELPCVLMVGNSLLLH
Ga0137416_103389922	3300012927	Vadose Zone Soil	LAAICALLIIVLEVSSVYFLKHRSGTYERISKQYSEARVARPGAPGEPPSVLIVGNSLLLHGIELDRLNALTASRMHIYPIFLEATGYYDWFYA
Ga0137416_108492672	3300012927	Vadose Zone Soil	MTYAKALAAICAALILMFELASIYLLNHRSATYARISRQYDEALKIRPASAGEPPNVLMVGNSLLLHGVQVNRLQEMTSSSMRIYPIFLEATGYYDWLYALHGLFLRG
Ga0137416_109524791	3300012927	Vadose Zone Soil	MRSSISDSKSTALAYAKVLVGICAILIIAIEISSIYLLKHHSLTYARVSRQYDEAVKMRPARPGELPCVLMVGNSLLLHG
Ga0137416_115120832	3300012927	Vadose Zone Soil	AMRSSVFDSKSLALAYAKALAGICAILIIAVEISSIYLLKHHSVTYARVSRQYDEAFKMRPARPGELPCVLMVGNSLLLHGDELDRLRALTSGSMRIYPIFLEAVVIT*
Ga0137404_108373072	3300012929	Vadose Zone Soil	MPSSISDSKSKAIAYAKALALICVLLILVFEIGSVYLLNNQSATYARISRQYDEALKMRPAGAAEPSSVLMVGNSLLLHGVQVD
Ga0137404_119926731	3300012929	Vadose Zone Soil	MRSSTSGSKSEAIAYAKALTAICVLLILVFEIASIYLLNHQSATYARISRQYDNALRIRPTDTAETPTVLMVGNSLLLHGVQLD
Ga0137410_105517322	3300012944	Vadose Zone Soil	MAYAAALAVICAGLMAVFEIVSVYLLNHQSATYARISRQYDEALKMRPGTAGEPPSVLMVGNSLLLHGVQVDRLQA
Ga0164303_115754452	3300012957	Soil	VASSISDSKTRALAQAITLVGICAILIIALEITSVYLLRHNSATYARISRQYDEAVKACPAGPGEPPSVLLVGNSLLLH
Ga0137411_11969212	3300015052	Vadose Zone Soil	MRSSVFDSKSIALAYAKALVGICAILIIAVEISSIYLLKHHSVTYARVSRQYDEAVKMRPARPGELPCVLMVGNSLLLHGVELDRLRALTSGSMRIYPIFLEA
Ga0137420_10521701	3300015054	Vadose Zone Soil	MRSSVFDSKSLALAYAKALAGICAILIIAVEISSAYLLKHHSVTYARVSRQYDEAVKMRPAGPGEPPCVLMVGNSLLLHGVELDRLRALTSGSNPAACASIPFSLRP
Ga0137420_10730471	3300015054	Vadose Zone Soil	MRSSVFDSKSLALAYAKALAGICAILIIAVEISSAYLLKHHSVTYARVSRQYDEAVKMRPAGPGEPPCVLMVGNSLLLHGVELDRLRALTSGSSMRIYPIFLEATGY
Ga0137420_11422591	3300015054	Vadose Zone Soil	MRSSVFDSKSLALAYAKALAGICAILIIAVEISSAYLLKHHSVTYARVSRQYDEAVKMRPAGPGEPPCVLMVGNSLLLHGVELDRFCGR*
Ga0137420_11422602	3300015054	Vadose Zone Soil	MRSSVFDSKSLALAYAKALAGICAILIIAVEISSAYLLKHHSVTYARVSRQYDEAVKMRPAGPGEPPCVLMVGISLLLHGVELDRLRALTSGS
Ga0137420_14119311	3300015054	Vadose Zone Soil	MRSSVFDSKSLALAYAKALAGICAILIIAVEISSAYLLKHHSVTYARVSRQYDEAVKMRPAGPGEPPCVLMVGNSLLLHGVELDRLRALTSGSMRIYPIFLEATGYY
Ga0137418_110664652	3300015241	Vadose Zone Soil	MRSSISGSKLTAITYAKALAAICALLAIVFEISSVYLLNHRSATYARVSRQYDEALGMRPGGPGEPPSVLMVGNSLLLHGVE
Ga0187824_100432202	3300017927	Freshwater Sediment	MHSSISDSKSAALAYTKALVVICLVLIIVSELCSVYLLKHDSLTYARISRQYDDALRIHPAAPDEPPTVLMVGNSLLLHGVELDRLAALTSNRMRIYPIFLE
Ga0066667_113470351	3300018433	Grasslands Soil	MHSSIFDSKSKAITYAKALVAVCALLIIVFELSSIYLLKHRSGTYARISRQYNEALSVRPSGPSEPPSVLIVGNSLLLHGIALDRLNALTSSRMRVYPIFLDATGYYDCFYALQGLFR
Ga0179594_103414642	3300020170	Vadose Zone Soil	MPSSISDSKSRCLLHCKVLAGICASLLAVIEISSIYLLNHHSPTYARISRQYSEAVKIRPAGPGEPANVLMVGNSLLLHGVELDR
Ga0179592_103126321	3300020199	Vadose Zone Soil	MRLSISDSKSTALTYAKVLVGICAILMIAIEISSIYLLKHDSLTYARVSRQYDEAVKTRPAGPGEPPCVLMVGNSLLLQGVKVDRLQALTSASMRIYPVFLEATGYYDWL
Ga0210407_101933301	3300020579	Soil	MPSSISDSKRTAVAYAKALLAICALVIIGFEISSHYLLNHFSLTYKRVSRQYEEAVTVHRAGPGEPPSV
Ga0210407_111303302	3300020579	Soil	MPSSISDSKTRALAHAITLVGICAVLIVALEITSVYLLRHHSATYARICRQYDVAVKMRPAGPGAPPTVLLVGNSLLLHGVELDRLQALTSSRMR
Ga0210399_104701211	3300020581	Soil	MPSSTSDSKSKAIAYAKALAAICAGLILVFETASVYLLNHQSATYARISRQYDEALKMRPAGAGEPPSVLMVGNSLLLHGVRLDRLQELTSSRMRVYPIFL
Ga0210406_103234731	3300021168	Soil	MPSSISDSKTTALAHAFALVGTCAVLIIALEITSVYLLRHNSATYARISRQYDEAVKIRPAGPGEPPSVLLVGNSLLLHGVQLDRLQALTSS
Ga0210406_112898801	3300021168	Soil	MPSSTSDSKSKAIAYAKALAAICAGLILVFETASVYLLNHQSATYARISRQYDEALKMRPAGAGEPPSVLMVGNSLLLHGVRLDRLQELTSSRMRVYPIFLEATGYYDWLYALHGLFLR
Ga0210400_105098412	3300021170	Soil	MHSSISDSKTRALAHAITLVGICAILTIALEITSVYLLRHNSATYARISRQYDQAVKMRPAGPGEPPSVLLVGNSLLLHGVELDRL
Ga0210397_104603182	3300021403	Soil	MPSFISGSKSKAIAYAKALAAICAVLILVFEITSVYLLKHQSATYARISRQYDEALKIHPADAGEPPNVLMVGNSLLLHGVQLNRLQELTSSRMRLYPIFLEAT
Ga0210387_108033611	3300021405	Soil	MPSSISDSKRTAVAYAKALLAICALVIIGFEISSHYLLNHFSLTYKRISRQYEEAVTVHRAGPGEPPSVLIVGNSLLLHGIQLDRLRSLTSARMQIYPVFLEATGY
Ga0210386_103507741	3300021406	Soil	MPSSTSGSNSKAMAYAKALAAICAMLMVVFEIASIYLLKHQSPTYARISRQYEEALKIRPAGGGEPPSVLMVGNSLLLHGV
Ga0210386_111628492	3300021406	Soil	MPSSISGSESKPIAYAKGLAAICALLILVFEIAAIYLLKHQSATYTRISRQYDEALKMRPAGAGEPPSVLMVGNSLLLHGVQLSRLQELTSTRMRLYPIFLEATGYYDWLY
Ga0210394_108060302	3300021420	Soil	MPSFISGSKSKAIAYAKALAAICAVLILVFETASVYLLKHQSATYARISRQYDEALKIHPADAGEPPNVLMVGNSLLLHGVQLNRLQELTSSRMRLYPILLEATGYYDWLYALHGL
Ga0210384_103593801	3300021432	Soil	MPSSISGSKSKAIAYAKALAAICALLILVFEIASVYLLKHRSGTYARISQQYAEALTIRPAGVGEPPSVLMVGNSLLLHGVQLDRLREITSSRMRVYPIFLE
Ga0210384_116119971	3300021432	Soil	MPSSISDSKSTAIAYAKALAAICVLLMLVFEIASVYLLHHQSATYARISQQYEEALKMRPAGAGEPPSVLMVGNSLLLHGVQVNRLQEMT
Ga0210390_109877211	3300021474	Soil	MPSSISGSKSKAIAYAKALAAICALLILVFEIASVYLLNHRSGTYARISRQYAEALTIRPAGAGEPPSVLMVGNSLLLHGVQLDRLQ
Ga0210402_100352434	3300021478	Soil	MRSFTSDSKFAALAYAKALAVICAMLMVAVEISSDYLLKHHSVTYARISGQYDEALKIRPAGPGEPASVLMVGNSLLLHGVQLERLQALTSSSMRVHPILLE
Ga0210402_110992752	3300021478	Soil	MLSSISDSKSKAIAYAKALAAICVLLILVFEIASVYLLNHQSATYARISRQYDDALKMRPAGSGEPSSVLMVGNSLLLHGVQVNCLQEMT
Ga0210402_117409221	3300021478	Soil	MPSSISGSKSKAMTYAKALAAICGVLILVFEIASVYLLNHWSPTYARISRQYDEALKIRPAGAGEPPSVLMVGNSLLLHGVEVNRLQELTSSRMRLYPVFLEATGYYDW
Ga0210410_101368033	3300021479	Soil	MPSSISGSKSKAIAYAKALAAICALLILVFEIASVYLLKHRSGTYARISQQYAEALTIRPAGVDEPPSVLMVGNSLLLHGVQLDRLREITSSRMRVYPIFLEATGYYDWLYALHGLFLRGAR
Ga0210410_102717522	3300021479	Soil	MPSSISDSKSKAIAYAKALAAICALLIVVFEIASVYLLNHQSATYARISRQYAEALTMRSGGAGEPPSVLMVGNSLLLHGVQVNRLQEMTSSRMRLYPIFLEA
Ga0210410_102976492	3300021479	Soil	MPSFISGSKSKAIAYAKALAAICAVLILVFETASVYLLKHQSGTYARISRQYDEALKIHPADAGEPPNVLMVGNSLLLHGVQLNRLQELTSSRMRLYPILLEATGYYDWLYGLH
Ga0210410_106196171	3300021479	Soil	MPSFTSGSKSKAIAYAKVLAAICAALILVFEITSVYLLNHQSATYARISRQYDDALKIRPAGAGEPPSVLMVGNSLLLHGVQLNRLQEL
Ga0210410_116663272	3300021479	Soil	MPSSISDSKSQAVAYAKVLAGVCAVLLIAIELAGIYLLKHDSATYARISHQYDEALTMHPCGYGAPPCVLMVGNSLLLHGV
Ga0210409_111466572	3300021559	Soil	MPSSISGSKSKAITYAKALAAICGVLILVFEIASVYLLNHWSPTYARISRQYDEALKIRPAGAGEPASVLMVGNSLLLHGVEVNRLQELTSSRMRVYP
Ga0247679_10950472	3300024251	Soil	MLSSISGSKSKAIAYTKVLAAICVVLILVFEIASVYLLNHRSATYARISRQYDEALKMPPAGAGEPPSVLMVGNSLLLHGVQVNRLQEMTSSSMRIYPIFLEATGYY
Ga0137417_10389371	3300024330	Vadose Zone Soil	MRLSISDSKSTALTYAKVVAGICAVLMIAIEISSIYLLKHDSLTYARVSRQYDEAVKTRPAGPGEPPCVLMVGNSLLLQGVKVDRLQALTSASMRIYPVFLEATG
Ga0137417_12101772	3300024330	Vadose Zone Soil	MRLSISDSKSTALTYAKVVAGICAVLMIAIEISSIYLLKHDSLTYARVSRQYDEAVKTRPAGPGEPPCVLMVGNSLLLQGVKVDRLQALTSASMRIYPVFLEAT
Ga0137417_12114181	3300024330	Vadose Zone Soil	MRSSVFDSKSLALAYAKALAGICAILIIAVEISSIYLLKHHSVTYARVSRQYDEAVKMRPARPGEPPCVLMVGNSLLLHGVELNRLRALTSGSMRIYPVFLEATGYYDWLYGLQRLF
Ga0179591_10146604	3300024347	Vadose Zone Soil	MPSSTSGSKSKTMTYAKALAAICAALILMFELASIYLLNHRSATYARISRQYDEALKIRPASAGEPPNVLMVGNSLLLHGVQVNRLQEMTSSSMRIYPIFLEATGYYDWLYALHGLFFVEPGRRL
Ga0209647_10860222	3300026319	Grasslands Soil	MRSSTSASKSQAIVCAKALVAVCAVLILVLEIASVYLLNHRSATYTRISQQYEQALKMRPAGAGEPPSVLMVGNSLLLHGVQVNRLQEMTSSRMRIYPIF
Ga0257164_10515682	3300026497	Soil	MPSSISDSKSTALTYAKTLVGICVLLMIAVEISSVYLLKHDSATYARISRQYDEAAKMRPARAGEPPSVLMVGNSLLLHGVELDRLQALTSSRMRIHPIFLE
Ga0209648_102923692	3300026551	Grasslands Soil	MPSSISDSKSTALAYAKTLVGICAILMIAVEITSVYLLKHDSATYARISRQYDEAAKMRPARPGEHPSVLMVGNSLLLHGVELDRLEALTSSRMRIYPIFLEATGYY
Ga0179587_106341971	3300026557	Vadose Zone Soil	MRLSISDSKSTALAYAKILVGICAVLMIAIEISSIYLLKHDSLTYARVSRQYDEAVKTRPAGPGEPPCVLMVGNSLLLQGVKVDRLQALTSASMRIYPVFLEATGYYDWL
Ga0209525_10427472	3300027575	Forest Soil	MPSSISDSKSQAIAYAKALALICVLLMIVFEIGSVYLLNHQSATYARISRQYDEALKIRHSEAGEPPSVLMVGNSLLLHGVQVDRLQEKTSSRMRLYPIF
Ga0209331_11446862	3300027603	Forest Soil	MHSSISDSKPQAVTYTKVLAGVCAVLLIAIELSAIYLLKHDSATYARISYQYDEAVRMHPCGYGAPPCVLMVGNSLLLHGVELNRL
Ga0209588_11184811	3300027671	Vadose Zone Soil	MPSSISDSKSTALAYAKTLVGICVILMIAVEISSVYLLKHDSATYARISRQYDEAAKMRPARPGEPPSVLMVGNSLLLHGVELDRLQALTSSRMRIH
Ga0209118_10349832	3300027674	Forest Soil	MPSSISGSKSKAIAYAKTLAAICAVLILVFEIASIYLLNHRSATYARISRQYDEALKIRPAGAGEPPSVLMVGNSLLLDGVDVERLQRSTSSRLRIYPV
Ga0208989_102556002	3300027738	Forest Soil	MPLSISDSKSKALTYAKVLAGICAILMIAIEISSIYLLKHDSLTYARVSRQYDEAVKTRPAGPGEPPCVLMVGNSLLLQGVKVDRLQALTSASMRI
Ga0209689_10858522	3300027748	Soil	MHSSISDSKSKAIAYAKTLVAVCALLVIAFELSSIYVLKHRSGTYARISKQYNEALSVRPSGPSEPPSVLMVGNSLLLHGIELDRLNALTSSRMRVYPIFLEAT
Ga0209166_107165921	3300027857	Surface Soil	MLSSISDSKSAALAYIKALVAACFVLIIVFEICSVYLLKHDSLTYARISRQYDEALRIQPAAPDEPPTVLMVGNSLLLHGVELDRLQALTS
Ga0209701_101382871	3300027862	Vadose Zone Soil	MRDSKSTALAYAKALLGICTILVIAIEISSAYLLQHHSATYARISRQYDEAIKMRPARPGDPPCVLMVGNSLLLHGVEL
Ga0247684_10573111	3300028138	Soil	MHSSISDSKSTALAYTKALAAICLVLIIVSELCSVYLLKHDSLTYARISRQYDDALRIHPAAPDEPPTVLMVGNSLLLHGVELDR
Ga0075385_115864762	3300030854	Soil	MPSSTSDSKSKAIGYAKAIAAICAVLSLVFEIAAVYLLNHQSATYARISRQYEEALRIRPTGTAEPPTVLMVGNSLLLHGVQVDRLQEMTSSSMRIIHIITNASFRL
Ga0170823_143499272	3300031128	Forest Soil	MPSSTSGSKSKAITYAKAIAAICALLILVSEIASVYLLNHQSATYARISRQYDDALKIRSAGAGEPPTVLMVGNSLLLHGVQLDRLQGLTASRMHLYPIFLEATGYYDW
Ga0170824_1144385391	3300031231	Forest Soil	MPSSTSGSKSKAITYAKAIAAICALLILVFEIASVYLLNHQSATYARISRQYDDALKIRSAGAGKPPTVLMVGNSLLLHGVQLDRLQGLTASRMHLYPIFLEATGYYDWLYALHG
Ga0307469_100420643	3300031720	Hardwood Forest Soil	MPSSTSGSKSDAIAYAKALAAICVVLILVFEIASVYLLNHRSATYARISRQYDEALKMHPASVGEPPSVLMVGNSLLLHGVQVNRLQEMTSSSMRIYPIFLEATG
Ga0307475_103021221	3300031754	Hardwood Forest Soil	MPSSISDSKRTAVAYAKALLAICALVIIGFEISSHYLLNHFSLTYKRISRQYEEAVTVHRAGPGEPPSVLIVGNSLLLHGIQLDRLRSLTSARMQIYPVFLEATG
Ga0307478_104123851	3300031823	Hardwood Forest Soil	MPSFTSGSKSKAIAYAKALAAICAALILVFELTSVYLLNHQSATYARISRQYDDALKIRPAAAGEPPSVLMVGNSLLLHGVQLNRLQDLTSSRMRIYPIFLEATG
Ga0307479_118113011	3300031962	Hardwood Forest Soil	MPSSTSVSKSKAIAYAKVLAAICALLIVVLEIASVYLLNHQSATYARISRQYDEALRIRRVGGGEPPTVLMVGNSLLLHGVQLDRLQELTASRMHLYPIFLEATG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F089925

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences