Metagenome Family F089946

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Overview

Basic Information
Family ID	F089946
Family Type	Metagenome
Number of Sequences	108
Average Sequence Length	66 residues
Representative Sequence	MEKVVENKVFNRRPPMFSCIRLRKRQQCCKPKIGGETQVTNKLSSESSKDQIQYRTMCERSIM
Number of Associated Samples	8
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	4.63 %
% of genes from short scaffolds (< 2000 bps)	3.70 %
Associated GOLD sequencing projects	6
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (93.519 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Root Nodules (65.741 % of family members)
Environment Ontology (ENVO)	Unclassified (100.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (100.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 15.87% β-sheet: 7.94% Coil/Unstructured: 76.19%
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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.52 %
All Organisms	root	All Organisms	6.48 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.52 %
cellular organisms	root	All Organisms → cellular organisms	6.48 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.52 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	6.48 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.52 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	6.48 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.52 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6.48 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.52 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	6.48 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.52 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	6.48 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.52 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	6.48 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.52 %
Mycobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	6.48 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.52 %
Mycobacterium tuberculosis complex	species group	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex	6.48 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.52 %
Mycobacterium tuberculosis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	6.48 %

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300021320\|Ga0214544_1027024	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	2457	Open in IMG/M
3300021320\|Ga0214544_1029014	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	2090	Open in IMG/M
3300021321\|Ga0214542_1041188	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	1157	Open in IMG/M
3300021321\|Ga0214542_1041699	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	1130	Open in IMG/M
3300021321\|Ga0214542_1066837	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	513	Open in IMG/M
3300021324\|Ga0214545_1026385	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	3162	Open in IMG/M
3300027357\|Ga0209589_1070451	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	551	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	100.00%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	100.00%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	100.00%

Habitat	Taxonomy	Distribution
Root Nodules	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Root Nodules	65.74%
Root Nodules	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Root Nodules	34.26%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300006943	Root nodule microbial communities of legume samples collected from California USA - Cow pea white BW	Host-Associated	Open in IMG/M
3300006944	Root nodule microbial communities of legume samples collected from California, USA - Cow pea red BW	Host-Associated	Open in IMG/M
3300021320	Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS3	Host-Associated	Open in IMG/M
3300021321	Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS1	Host-Associated	Open in IMG/M
3300021324	Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS4	Host-Associated	Open in IMG/M
3300021327	Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS2	Host-Associated	Open in IMG/M
3300027296	Root nodule microbial communities of legume samples collected from California, USA - Cow pea red BW (SPAdes)	Host-Associated	Open in IMG/M
3300027357	Root nodule microbial communities of legume samples collected from California USA - Cow pea white BW (SPAdes)	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0099822_10290001	3300006943	Root Nodules	MEKVVGNKVFNQKPSMFSCIRLRKRQQCCKPKIGGETQVTNKLSSESSKDQLQCKTMCERSIILIN*
Ga0099822_10923971	3300006943	Root Nodules	EKEVKKKIMEKVVENKVFNRKPPMFSCIRLRKRQQCCKPKIGGETQVTNKLSSESSKDQIQ*
Ga0099822_10974771	3300006943	Root Nodules	GREIEEKEKEVKKKIMEKVVENKVFNRKRPMFSCICLRKRQQCCKPKIGGETQVSNKLSSKSSWDQI*
Ga0099822_11019432	3300006943	Root Nodules	MEKVVENMVFNRKPPMFSCIRLRKRQQCCKPKIGGETIVTNKLSPESSKDQFST*
Ga0099822_11056361	3300006943	Root Nodules	KIMEKVVENKVFNRRPPMFSCVRLRKRQQCCKPKIGGETQVTNKLSSESSKDQIQYRTICERSMM*
Ga0099822_11144961	3300006943	Root Nodules	EGREIEEKEKEVKKKIMEKVVENKVFNRKPPMFSCIRLRKRQQCCKPKIGGETQVSNKLSSESSKDQIEYMTMCERSIM*
Ga0099822_11149381	3300006943	Root Nodules	MEKVVDNKVFNRKPPMFSCIRLRKRQQCYKPKIGGETQVTNNLYSESSKDPIQYMTMCERSIM*
Ga0099823_11213192	3300006944	Root Nodules	MENVVENKVFNRRPPMFSCIRLGKRQQCCKPKIGGETQVTNKLSSESSKDQIQYRTMCERNIM*
Ga0099823_11215083	3300006944	Root Nodules	MKKVVENKVFNRRPPKFSCIRLRKRQLCCKPKIGGETQVTNKLSSESSKDQIQYRT
Ga0214544_10270244	3300021320	Root Nodules	MEKVVDNKVFNRKPPMFSCIRLRKRQQCYKPKIGGETQVTNNLYSESSKDPIQYMTMCERSIM
Ga0214544_10290144	3300021320	Root Nodules	MEKVVENKVLNRRPSMFSCIRLRKRQQCCKPKIGGETQVTNNLYSESSKDLIQYMTMCERSIM
Ga0214544_10305813	3300021320	Root Nodules	MEKVVENKVCNRRPPMFSCIRLRKQQQCCTPKIGGETQVTNKLSSESSKDQIQYRTMCERSIM
Ga0214544_10321232	3300021320	Root Nodules	MEKVVENKVFNRRPPMFSCIRLRKRQQCCKPKIGGETQVTNKLYSESSKDQIQYMTMCERSIM
Ga0214544_10324711	3300021320	Root Nodules	MEKVVENKVFNQMPPMFSCIRLRKRQQCYKPKIGGETKVTNKIKFESSKDQIQFMTMCERSIM
Ga0214544_10326892	3300021320	Root Nodules	MEKVVENKVFNRRPPMFSCIRLRKRQQCCKPKIGGETQVTNKLSSESSKDQIQYRTMCERSIM
Ga0214544_10356371	3300021320	Root Nodules	EKEKEVKKKIMEKVVENKVFNRKPPMFSCICLRKRQQCCKPKSGGETQVTKKLSSESTNDQIQYMTMCERSIM
Ga0214544_10365893	3300021320	Root Nodules	TAEGREIEEKEKEVKKKIMEKVVENKVFNRKPPMFSCIHLRKRQQCCRPKIGGETQVTNKLSS
Ga0214544_10374523	3300021320	Root Nodules	MEKVVENKVFNRRPPMFSCIRLRKRQQCCKPKIGGETQVTNKLSSESSKDQIQYMTMCERSIM
Ga0214544_10404951	3300021320	Root Nodules	AEGREIEEKEKEVKKNIMERVVENKVFNRKPPMFSCIRLRKRQQCCKPSFGGETQVTNKLSSE
Ga0214544_10410482	3300021320	Root Nodules	KEVKKKIMEKVVENKVFNRKPPMFSCIRLRKRQQCCKPKIGGETQVTNKLSPESNKDQIQYITICERSII
Ga0214544_10410792	3300021320	Root Nodules	EKEKEVKKKIMEKVVENKVFNRKPPMFSCIRLRKRQQCCKPKTGGETQVTIKLSSESSKDQIPYSTMCERSIM
Ga0214544_10438753	3300021320	Root Nodules	VKKKIMEKVVENKVFNRRPPMFSCIRLRKRQQCYKPKIGGETTVTNKLSPESSKDQIE
Ga0214544_10442032	3300021320	Root Nodules	MEKEVENKVFNRKPPMFSCIRLRKRQQCCKPKIGGETQVTNKLSSESSKDQIQYRTMFERSIM
Ga0214544_10451002	3300021320	Root Nodules	MEKVVENKVFNRRPPMFSCVRLRKRQQCCKPKIGGETQVTNKLSSESSKDQIQYRTICERSMM
Ga0214544_10454132	3300021320	Root Nodules	MIMEKVVDNKVFDRKPPMFSCIRLRKRQQCCKPKIGGETQVTNKLSSESSKDQIQYRTMCERSIM
Ga0214544_10491912	3300021320	Root Nodules	IEEKEKEVKKKMMEKVVENKVFNRKPPMFSCIRLRKRQQCCKPKIGGETQVTNKLSSESSKDQIQYRTMCERSIM
Ga0214544_10494792	3300021320	Root Nodules	EGREIEEKEKEVKKKIMEKVVENKVFNRKRPMFSCICLRKRQQCCKPKIGGETQVSNKLSSKSSWDQI
Ga0214544_10508171	3300021320	Root Nodules	MEKVVENKVFNRKPPMFSCIRLRKRQQCCKPKIGGETQVTNKLSSESSKDQIQYKTMSERRTLVIFFXDGHG
Ga0214544_10512961	3300021320	Root Nodules	MEKVVENKVFNQKPPMFSCIRLRKRQQCCKPKIGGETQVTNKLSSESSKDQIQY
Ga0214544_10515681	3300021320	Root Nodules	MENVVENKVFNRRPPMFSCIRLXKREQCCKPKIGGETQVTNKLSSESSKDQVQYKTMCERSIMXYCDEYVFLPSFNV
Ga0214544_10516572	3300021320	Root Nodules	MEKVVENKVFNRRPPMFSCIRLRKRQQCYKPKIGGETQVTNKLSSKSSKDSIQY
Ga0214544_10521293	3300021320	Root Nodules	EKEKEVKKKIMEKVVENKVFNRKPPMFSCICLRKRQQCCKPNIGGQTQVTNKLSSESSKDQIQYMTMCERSIM
Ga0214544_10547821	3300021320	Root Nodules	IEEKEKEVKKKIMENVVENKVFNRRPPMFSCIRLRKRQQCCKPKIGGETQVTNKLSSESSKDQIQYRTMCGRSIM
Ga0214544_10553563	3300021320	Root Nodules	KEVRKKIMEKVVENKVFNRKPPMFSCIRLRKRQQCCKPKIGGKTQVTNKLSSETSKDQIQYRTMCERRIM
Ga0214544_10579912	3300021320	Root Nodules	MKKVVEKKVFNRRLPMFSCIRLRKRQQCCKPKIGGETQVTNKLSSESSKDQIQYR
Ga0214544_10590701	3300021320	Root Nodules	EKEKEVRKKIMEKVVENKVFNRKPPMFSCIRLRKRQQCCKPKIGGETQVTNKLSSESSKDQIQYKTMCERRIM
Ga0214544_10605882	3300021320	Root Nodules	MEKVVENKVFNRRPPMFSCIRLRKRQQCCKPKIGGETQVTNKLSSESSKDQIQYRTM
Ga0214542_10251035	3300021321	Root Nodules	KLQKEGKLKKKIMEKVVENKVFNRKPPMFSCIRLRKRQQCCKPKIGGETQVTKNFSSESSKDQIQ
Ga0214542_10282697	3300021321	Root Nodules	MEKVVENKVFNRKPPMFSCIRLRKRQQCCKPKIGGETEVTNNLYSESSKDQI
Ga0214542_10385391	3300021321	Root Nodules	MEKVVENKVFNRKPPMFSCIRLRKRQQCCKPKIGGETQVTNKLSSESSKDQIQYKTMCERSIM
Ga0214542_10406161	3300021321	Root Nodules	EKEKEVKKKIMEKVVENKVFNRKPPMFSCIRLRKRQQCCKPKIGGETQVTNKLSSESSKYQMQYRTMCERSIM
Ga0214542_10411884	3300021321	Root Nodules	MEKVVDNKVFNRRPPMFSCINLXKRQQCCKPKIGGETQVTNKLSSESSKDQIQYRTMCERSIM
Ga0214542_10416993	3300021321	Root Nodules	REIEEKEKEVKKKIMEKVVENKVFNRKPPMFSCIRLXKRQQCCKPKIGGETQVTNKLSSEPIKDQIQYRTMCERNIMXYCSHELSSSSLEMGMASF
Ga0214542_10480052	3300021321	Root Nodules	MEKVVENKVFNRRPPMFSCIRLRKRQQCCKPKIGGETQVTNKLSSESSKDQIQYKTMCEGCIM
Ga0214542_10493311	3300021321	Root Nodules	AEGREIEEKEKEVKKKIMEKVVENKVFNRKPPMFSCIRLRKQRQCCKPNIGGETKVTNKLSTESSKDQIQYVTNCERSIL
Ga0214542_10499932	3300021321	Root Nodules	MEKVVENKVFNRRPAMFSCIRLPQRQQCCKPMIGGETQVTNKLYSESSKDQIQYMTMCERSIM
Ga0214542_10553131	3300021321	Root Nodules	MEKVVENKVFNRRPPMFSCIRLRKRQQCCKPKIGGETQVTNKLSSESSKDQIQYKTMCERNIM
Ga0214542_10566732	3300021321	Root Nodules	MEGRENEEKEKEVKKKIMEKVVENKVFNRKPPMFSCIRLRKRQQCCKPKIGGETQVNNKLSSESSKDQIQ
Ga0214542_10591221	3300021321	Root Nodules	VKEKIMEKVVENKVFNRRPPMFSCVRLRKRQQCCKPKIGGETQVTNKLSSESSKDQIQYRTICERSMM
Ga0214542_10591771	3300021321	Root Nodules	MEIEEKEKEVKKKIMEKVVENKVFNRKPPMFSCIRLRKRQQCWKPKIGRETQVTNKLSSESSKDQIQYRTMCERSIM
Ga0214542_10601762	3300021321	Root Nodules	MEKVVENKVFNRRPPMFSCIRLRKRQQCCKPKIGGETQVTNKLSSESSKDQIQYKTMCERSIM
Ga0214542_10614771	3300021321	Root Nodules	MEKVVENKVFNRRPPMFSCIRLRKRQQCCKPKIGGETQVTNKLSSESSKDQIQYRTMCESSIM
Ga0214542_10615731	3300021321	Root Nodules	MEKVVENKVFNRKPPMFSCIRLRKRQQCCKPKIGGETQVTNKLSSESSKDQIQY
Ga0214542_10635152	3300021321	Root Nodules	MKKVVEKKVFNRRLPMFSCIRLRKRQQCCKPKIGGETQVTNKLSSESSKDQIQYRT
Ga0214542_10635641	3300021321	Root Nodules	MEKVVENKVFNRKPPMFSCIRLRKRQQCCKPKIGGETQVTNKLSSESSKDQIQYRTMCE
Ga0214542_10641221	3300021321	Root Nodules	KEKEVKKKIMEKVVENKVFNRKPPMFSCIRLRKRQQCCKPKIGGEPTVTNKLSPESSKDQIQ
Ga0214542_10664192	3300021321	Root Nodules	MIMEKVVDNNVFNRRLPMFSCIRLRKRQQCCKPKIGGETQVTNKLSSESSKDQIQYK
Ga0214542_10668372	3300021321	Root Nodules	EIEEKEKELKNKIMEKVVENKVFNRKPPMFSCIRLPQRQQCCKPKIGGETQVTNNLSSESSKDQIHYMTMCERSIM
Ga0214542_10676572	3300021321	Root Nodules	MEKVVVNKVFNRRPPMFSCIRLRKRQQCCKPKIGGETQVTNKLSSESSKDQIQYRTMCERSIM
Ga0214542_10679672	3300021321	Root Nodules	LEKEKEVKKKIMEKVVENKVFNRKPPMFSCIRLRKRQQCCKPKIGGETQVSNKLSSESSKDQIEYMTKCERSII
Ga0214545_10263851	3300021324	Root Nodules	MQKVVEKKVFNRKPPMFSCIRLRKRQQCCKPKIGGETQVTNKLSSESSKDQIQYRTMCERSIM
Ga0214545_10292932	3300021324	Root Nodules	MKKVVENKVFNRKPPMFSCIRLRKRQQCCKPKIGGETQVTNKRSPESSKDQIRE
Ga0214545_10307946	3300021324	Root Nodules	MEKVVENKVFNRRPPMFSCIRLRKRQQCCKPKIGGETQVTNKLSSESSKDQIQYRTMCERNIM
Ga0214545_10363052	3300021324	Root Nodules	MEKVVDNKVFNRRPPMFSCIRLRKRQQCCKPKIGGETQVTNKLSSESSKDQIQYRTMCERSIM
Ga0214545_10440623	3300021324	Root Nodules	MENVVENKVFNRRPPMFSCIRLRKRQQCCKPKIGGETQVTNKLSSESSTDQIQYRTMCERNIM
Ga0214545_10492423	3300021324	Root Nodules	EGREIEEKEKEVKKKIMEKVVENKVFNRKPPMFSCIRLRKRQQCCKPKIGRETQVTNKLSSESSKDQIQYRTMYERSIM
Ga0214545_10611912	3300021324	Root Nodules	MEKVVENMVFNRKPPMFSCIRLRKRQQCCKPKIGGETIVTNKLSPESSKDQFST
Ga0214545_10646172	3300021324	Root Nodules	IEDKEKEVKKKIMEKVVENKVFNRKPPMFSCIRLRKRQQCCKQKIDGETQVTNKLSSESSKDQIQYRTMCEKSIM
Ga0214545_10664862	3300021324	Root Nodules	MEKVVKNKVFNRKPPMFSCIRLRKREQCCKPKIGGETQVTNKLSSESSKDQIQYRTMCERSIM
Ga0214545_10670562	3300021324	Root Nodules	TAEGREIEEKEKEVKKKIMEKVVENKVFNRKPPMFSCIHLRKGQQCCKPKIGGETQVTNKLSS
Ga0214543_10324792	3300021327	Root Nodules	MENVVENKVFNRRPPMFSCIRLGKRQQCCKPKIGGETQVTNKLSSESSKDQIQYRTMCERNIM
Ga0214543_10363711	3300021327	Root Nodules	MENVVENKVFNRRPPMFSCIRLGKRQQCCKPKIGGETQVTNKLSSESSKDQIQYRTMCERSIM
Ga0214543_10363713	3300021327	Root Nodules	MENVAENKVFNRRPPMFSCIRLRKRQQCCKPKIGGETQVTNKLSSESSTDQIQYRTMCERNIM
Ga0214543_10380391	3300021327	Root Nodules	MEIEEKEKDVKKKIMEKVVENKVFNRKPPMFSCIRFRKRQQCCKPKIGGETQVTNKLSSESSKDQIQYRTMCERSIM
Ga0214543_10387691	3300021327	Root Nodules	MEKVVENKVFNRRPPMFSCIRLRKRQQCCKPKIGGETQVTNKLSSESSKDQIRYRKMYERSIM
Ga0214543_10390344	3300021327	Root Nodules	IEEKEKEVKKKIMEKVVENKVFNRKPPMFSCICLRKRQQCCKPKSGGETQVTKKLSSESTNDQIQYMTMCERSIM
Ga0214543_10403051	3300021327	Root Nodules	REIEEKEKEVKKKIMEKVVENKVFNRKPPMFSCIRLRKRQQCCKPKIGRETQVTNKLSSESSKDQI
Ga0214543_10545012	3300021327	Root Nodules	EIEEKEKEVKKKIMEKVVENKVFNRKPPMFSCIHLRKRQQCCRPKIGGETQVTNKLSS
Ga0214543_10570891	3300021327	Root Nodules	EGREIEEKEKEVKKKIMEKVVENKVFNRKPPMFSCIRLQKRQQCCKPKIGGETQVTNKLSSESSKDTFQYRTMCERSIM
Ga0214543_10655553	3300021327	Root Nodules	KKIMEKVVENKVFNRKPPMFSCIRLRKRQQCCKPKIGGETQVSNKLSSESSKDQIEYMKKCERSIM
Ga0209389_10666681	3300027296	Root Nodules	MEKVVENKVFNRRPPMFSCIRLRKRQQCCKPKIGGETQVTNKLSSESSEDQIQYRTMCERSIM
Ga0209389_10706591	3300027296	Root Nodules	EKEVKKKIMEKVVENKVFNRKPPMFSCIRLRKRQQCCKPKIGRESTVTNKLSTESSKDQIQYVTILERSIM
Ga0209389_10714935	3300027296	Root Nodules	EGREIEEKEKEVKKKIMEKVVENKVFNRKPPMFSCICLRKRQQCCKPKSGGETQVTKKLSSESTNDQIQYMTMCERSIM
Ga0209389_10837473	3300027296	Root Nodules	MEKVVENKVFDRKPPMFSCIRLRKRQQCCKPKIGGETQVTNKLSSESSKDQIQYRTMCKRSIM
Ga0209389_10855414	3300027296	Root Nodules	MEKVLENNAFNRRPPMFSCIRLRKRQQCCKPKIGGETQVTNKLSSESSKDQIQYRTMCERSIV
Ga0209389_10875644	3300027296	Root Nodules	VKKKIMEKVVENKVFNRKPPMFSCIRLRKRQQCCKPKIGGETEVTNKLSSESSKDQIQYRTVCERGMM
Ga0209389_10979791	3300027296	Root Nodules	NEVKIKMMEKVVENKEFNRRPPMFSCICLRKRQQCCKPKIGGETQVTNKLSSESSKDQIQYRTMCERSIM
Ga0209389_11053591	3300027296	Root Nodules	EEKEKEVKKKIMEKVVENKVFNRKPPMFSCIRLRKRQQCCKRRIGGQTQVTNKLSSESSKDQIQYRTMCERSIM
Ga0209389_11152983	3300027296	Root Nodules	MEIEEKVKDVKKKIMEKVVENKVFNRKPPMFSCIRFRKRQQCCKPKIGGETQVTNKLSSESSKDQIQYRTMCERSIM
Ga0209389_11260741	3300027296	Root Nodules	MEKVVENKVFNRKPPMFSCIRLRKRQQCCKPKIGGETQVTNKLSSESSKDQIQYKTMCER
Ga0209389_11276851	3300027296	Root Nodules	MEKVVENKVFNRKPPMFSCIRLRKRQQCCKPKIGGETQVTNKLSSESSKDQIQYRT
Ga0209389_11330121	3300027296	Root Nodules	MIMEKVVDNNVFNRRLPMFSCIRLRKRQQCCKPKIGGETQVTNKLSSESSKDQIQYKT
Ga0209389_11393463	3300027296	Root Nodules	EKEVKKKIMEKVVENKVFNRKPPMFSCIRLRKRQQCCKPKIGRETQVTNKLSFESGKNQIQYNTMCERSIM
Ga0209589_10346125	3300027357	Root Nodules	MEKVVENKEFNRRPPMFSCICLRKRQQCCKPKIGGETQVTNKLSSESSKDQIQYRTMCERSIM
Ga0209589_10364634	3300027357	Root Nodules	MEKVVENKVFNRKPPMFSCIRLRKRQQCCKPKIGGEAQVTNKFSSESSKDQIQYSTMCERSIM
Ga0209589_10441331	3300027357	Root Nodules	EVKKKIMEKVVENKVFNRRPPMFSCVRLRKRQQCCKPKIGGETQVTNKLSSESSKDQIQYMTMCEISIM
Ga0209589_10459012	3300027357	Root Nodules	EKEKEVKKKIMEKVVENKVFNRKPPMFSCIRLRKRQQCCKPKTGGETQVTIKLSSESSKDQIQYMNICERSIM
Ga0209589_10479754	3300027357	Root Nodules	MQKVVENRVFNRKPPMLSCIRLRKRQQCCKPKIGGETQVTNKLSSESSKDQIQYRTMCE
Ga0209589_10488743	3300027357	Root Nodules	EKEKEVKKKIMEKVVENKVFNRKPPMFSCIRLRKRQLCCKPKIGRETQVTNKISSESSKDQIEYMTMCERSIM
Ga0209589_10596021	3300027357	Root Nodules	VFNRRPPMFSCIRLRKRQQCCKPKIGGETQVTNKLSSESSKDQIQYRTMCERSIM
Ga0209589_10612402	3300027357	Root Nodules	EGREIEEKEKEVKKKIMEKVVENKVFNRKPPMFSCIRLQKRQECCKPKIGGETQVTNKLSFESSKDQI
Ga0209589_10677213	3300027357	Root Nodules	KEVKKKIMENVVENKVFNRRPPMFSCIRLRKRQQCCKPKIGGETQVTNKLSSESSKDQIQYRTMCGRSIM
Ga0209589_10683152	3300027357	Root Nodules	EKEKEVKKKNMEKVVENKVFNRKPPMFSCIRLRKRQQCCKPKIGGETQVTNKLSSESSKDQIQYRTMCERSTM
Ga0209589_10688371	3300027357	Root Nodules	EEKEKEVKKKIMEKVVENKVFNRKPPMFSCIRLRKRQQCCKRRIGGETQVTNKLSSESRKDQIQYRTMCERSII
Ga0209589_10704512	3300027357	Root Nodules	EIEEKEKEVKKKIMEKVVENKVFNRRPPMFSCIRLRKRQQCFKPKIGGETQVTNKLSSESSKDQIQYRTMCERSIM
Ga0209589_10707271	3300027357	Root Nodules	GREIEEKEKEVKKKIMEKVVENKVFNRKPPMFSCIRLQKRQECCKPKIGGETQVTNKLSFESSKDQI
Ga0209589_10722461	3300027357	Root Nodules	MDKVVEKKVFNRRPPMFSCIRLRKRQQCCKPKIGGETQVTNKLSSESSKDQIQYRTMCERSIM
Ga0209589_10737051	3300027357	Root Nodules	MEKVVENKVFKRRPPMFSCIRLRKRQQCCKPKIGGETQVTNKLSSESSKDQIHDMTMCE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F089946

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences