NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F090003

Metagenome / Metatranscriptome Family F090003

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F090003
Family Type Metagenome / Metatranscriptome
Number of Sequences 108
Average Sequence Length 61 residues
Representative Sequence HGDMDTTMVFDASKTMVDHAKAKGVNVTWLPVIGGQHVDAWAQPEILKQTFDFFDKYKAKQK
Number of Associated Samples 92
Number of Associated Scaffolds 108

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 5.56 %
% of genes near scaffold ends (potentially truncated) 89.81 %
% of genes from short scaffolds (< 2000 bps) 90.74 %
Associated GOLD sequencing projects 84
AlphaFold2 3D model prediction Yes
3D model pTM-score0.42

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (75.926 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(12.037 % of family members)
Environment Ontology (ENVO) Unclassified
(40.741 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(63.889 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 35.56%    β-sheet: 0.00%    Coil/Unstructured: 64.44%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.42
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 108 Family Scaffolds
PF08714Fae 16.67
PF00557Peptidase_M24 3.70
PF00578AhpC-TSA 2.78
PF01968Hydantoinase_A 2.78
PF09127Leuk-A4-hydro_C 1.85
PF13505OMP_b-brl 1.85
PF02416TatA_B_E 1.85
PF06778Chlor_dismutase 1.85
PF09587PGA_cap 1.85
PF00072Response_reg 0.93
PF13561adh_short_C2 0.93
PF12802MarR_2 0.93
PF01523PmbA_TldD 0.93
PF00275EPSP_synthase 0.93
PF13263PHP_C 0.93
PF13011LZ_Tnp_IS481 0.93
PF01243Putative_PNPOx 0.93
PF12796Ank_2 0.93
PF13570PQQ_3 0.93
PF13620CarboxypepD_reg 0.93
PF07715Plug 0.93
PF10503Esterase_PHB 0.93
PF00593TonB_dep_Rec 0.93
PF07676PD40 0.93
PF08241Methyltransf_11 0.93
PF03928HbpS-like 0.93
PF00083Sugar_tr 0.93
PF06026Rib_5-P_isom_A 0.93

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 108 Family Scaffolds
COG1795Formaldehyde-activating enzyme (5,6,7,8-tetrahydromethanopterin hydrolyase)Energy production and conversion [C] 16.67
COG0308Aminopeptidase N, contains DUF3458 domainAmino acid transport and metabolism [E] 1.85
COG1826Twin-arginine protein secretion pathway components TatA and TatBIntracellular trafficking, secretion, and vesicular transport [U] 1.85
COG3253Coproheme decarboxylase/chlorite dismutaseCoenzyme transport and metabolism [H] 1.85
COG0120Ribose 5-phosphate isomeraseCarbohydrate transport and metabolism [G] 0.93
COG0312Zn-dependent protease PmbA/TldA or its inactivated homologGeneral function prediction only [R] 0.93

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms75.93 %
UnclassifiedrootN/A24.07 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300002077|JGI24744J21845_10072100Not Available630Open in IMG/M
3300003267|soilL1_10135617All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis1028Open in IMG/M
3300003324|soilH2_10318818All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis1323Open in IMG/M
3300004114|Ga0062593_100926706All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → unclassified Sphingomonadales → Sphingomonadales bacterium884Open in IMG/M
3300004463|Ga0063356_102277059All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → unclassified Sphingomonadales → Sphingomonadales bacterium826Open in IMG/M
3300004801|Ga0058860_12015919Not Available650Open in IMG/M
3300005093|Ga0062594_101078376All Organisms → cellular organisms → Bacteria782Open in IMG/M
3300005093|Ga0062594_101850329All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura atramentaria638Open in IMG/M
3300005294|Ga0065705_11167985All Organisms → cellular organisms → Bacteria508Open in IMG/M
3300005340|Ga0070689_100333554All Organisms → cellular organisms → Bacteria1269Open in IMG/M
3300005353|Ga0070669_101236254All Organisms → cellular organisms → Bacteria646Open in IMG/M
3300005354|Ga0070675_100295290All Organisms → cellular organisms → Bacteria1427Open in IMG/M
3300005354|Ga0070675_101754338All Organisms → cellular organisms → Bacteria → Proteobacteria573Open in IMG/M
3300005355|Ga0070671_101343263All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → unclassified Sphingomonadales → Sphingomonadales bacterium631Open in IMG/M
3300005364|Ga0070673_100112294All Organisms → cellular organisms → Bacteria2262Open in IMG/M
3300005364|Ga0070673_100236873All Organisms → cellular organisms → Bacteria1585Open in IMG/M
3300005364|Ga0070673_101904770Not Available564Open in IMG/M
3300005455|Ga0070663_100467966All Organisms → cellular organisms → Bacteria1042Open in IMG/M
3300005456|Ga0070678_100260703All Organisms → cellular organisms → Bacteria → Proteobacteria1458Open in IMG/M
3300005457|Ga0070662_100784035Not Available810Open in IMG/M
3300005459|Ga0068867_100617186All Organisms → cellular organisms → Bacteria948Open in IMG/M
3300005459|Ga0068867_101578575Not Available613Open in IMG/M
3300005466|Ga0070685_10945619All Organisms → cellular organisms → Bacteria644Open in IMG/M
3300005471|Ga0070698_100158329All Organisms → cellular organisms → Bacteria2210Open in IMG/M
3300005535|Ga0070684_101653894Not Available604Open in IMG/M
3300005539|Ga0068853_101170038All Organisms → cellular organisms → Bacteria742Open in IMG/M
3300005546|Ga0070696_101615465All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → unclassified Sphingomonadales → Sphingomonadales bacterium557Open in IMG/M
3300005614|Ga0068856_100582444All Organisms → cellular organisms → Bacteria1140Open in IMG/M
3300005618|Ga0068864_100125589Not Available2299Open in IMG/M
3300005718|Ga0068866_10532088Not Available783Open in IMG/M
3300005834|Ga0068851_10915797Not Available550Open in IMG/M
3300005836|Ga0074470_10896143All Organisms → cellular organisms → Bacteria → Proteobacteria896Open in IMG/M
3300005840|Ga0068870_10216497All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1170Open in IMG/M
3300005840|Ga0068870_10241726All Organisms → cellular organisms → Bacteria → Acidobacteria1115Open in IMG/M
3300005841|Ga0068863_101504908All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → unclassified Sphingomonadales → Sphingomonadales bacterium682Open in IMG/M
3300005842|Ga0068858_100091459All Organisms → cellular organisms → Bacteria2832Open in IMG/M
3300006854|Ga0075425_101657802All Organisms → cellular organisms → Bacteria720Open in IMG/M
3300006881|Ga0068865_101677478All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → unclassified Sphingomonadales → Sphingomonadales bacterium572Open in IMG/M
3300009098|Ga0105245_12734526All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → unclassified Sphingomonadales → Sphingomonadales bacterium546Open in IMG/M
3300009156|Ga0111538_10404971All Organisms → cellular organisms → Bacteria1728Open in IMG/M
3300010036|Ga0126305_10328145Not Available998Open in IMG/M
3300010040|Ga0126308_10024988All Organisms → cellular organisms → Bacteria → Proteobacteria3271Open in IMG/M
3300010360|Ga0126372_10104469All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium2141Open in IMG/M
3300010396|Ga0134126_11219412Not Available835Open in IMG/M
3300010397|Ga0134124_12679790All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → unclassified Sphingomonadales → Sphingomonadales bacterium542Open in IMG/M
3300010401|Ga0134121_11677294All Organisms → cellular organisms → Bacteria → Acidobacteria658Open in IMG/M
3300011119|Ga0105246_10039907All Organisms → cellular organisms → Bacteria3165Open in IMG/M
3300012200|Ga0137382_11307019All Organisms → cellular organisms → Bacteria512Open in IMG/M
3300012212|Ga0150985_100320152Not Available581Open in IMG/M
3300012212|Ga0150985_104052033All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → unclassified Sphingomonadales → Sphingomonadales bacterium505Open in IMG/M
3300012212|Ga0150985_108834463Not Available808Open in IMG/M
3300012212|Ga0150985_118159413All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pseudanabaenales → Leptolyngbyaceae → Phormidesmis → Phormidesmis priestleyi → Phormidesmis priestleyi Ana805Open in IMG/M
3300012212|Ga0150985_121313713Not Available882Open in IMG/M
3300012469|Ga0150984_103995710All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → unclassified Sphingomonadales → Sphingomonadales bacterium516Open in IMG/M
3300012469|Ga0150984_104740903Not Available578Open in IMG/M
3300012486|Ga0157331_1039332All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → unclassified Sphingomonadales → Sphingomonadales bacterium505Open in IMG/M
3300012893|Ga0157284_10300391All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → unclassified Sphingomonadales → Sphingomonadales bacterium526Open in IMG/M
3300012905|Ga0157296_10158228All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → unclassified Sphingomonadales → Sphingomonadales bacterium685Open in IMG/M
3300012907|Ga0157283_10162456All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → unclassified Sphingomonadales → Sphingomonadales bacterium670Open in IMG/M
3300013100|Ga0157373_11508350All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Erythrobacteraceae513Open in IMG/M
3300014969|Ga0157376_12171040Not Available594Open in IMG/M
3300015200|Ga0173480_10037580All Organisms → cellular organisms → Bacteria2115Open in IMG/M
3300015371|Ga0132258_12841170All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylobacter → Methylobacter tundripaludum1205Open in IMG/M
3300015371|Ga0132258_13840471All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → unclassified Sphingomonadales → Sphingomonadales bacterium1023Open in IMG/M
3300015371|Ga0132258_13876152All Organisms → cellular organisms → Bacteria1017Open in IMG/M
3300015374|Ga0132255_103395822Not Available678Open in IMG/M
3300015374|Ga0132255_104636609All Organisms → cellular organisms → Bacteria → Proteobacteria582Open in IMG/M
3300018064|Ga0187773_11010411All Organisms → cellular organisms → Bacteria546Open in IMG/M
3300018429|Ga0190272_12769790Not Available540Open in IMG/M
3300018469|Ga0190270_10976582All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → unclassified Sphingomonadales → Sphingomonadales bacterium871Open in IMG/M
3300018476|Ga0190274_13848042All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → unclassified Sphingomonadales → Sphingomonadales bacterium508Open in IMG/M
3300021082|Ga0210380_10415327Not Available616Open in IMG/M
3300021406|Ga0210386_10997367All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → unclassified Sphingomonadales → Sphingomonadales bacterium714Open in IMG/M
3300022880|Ga0247792_1131143All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → unclassified Sphingomonadales → Sphingomonadales bacterium533Open in IMG/M
3300025315|Ga0207697_10276195All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → unclassified Sphingomonadales → Sphingomonadales bacterium744Open in IMG/M
3300025885|Ga0207653_10190589All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes770Open in IMG/M
3300025903|Ga0207680_10930754All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → unclassified Sphingomonadales → Sphingomonadales bacterium623Open in IMG/M
3300025912|Ga0207707_10255177All Organisms → cellular organisms → Bacteria1523Open in IMG/M
3300025923|Ga0207681_11085988All Organisms → cellular organisms → Bacteria → Proteobacteria672Open in IMG/M
3300025931|Ga0207644_11188171Not Available641Open in IMG/M
3300025934|Ga0207686_11091880Not Available650Open in IMG/M
3300025945|Ga0207679_12197523All Organisms → cellular organisms → Bacteria500Open in IMG/M
3300025960|Ga0207651_12027126All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → unclassified Sphingomonadales → Sphingomonadales bacterium517Open in IMG/M
3300026035|Ga0207703_10261081All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → unclassified Sphingomonadales → Sphingomonadales bacterium1566Open in IMG/M
3300026078|Ga0207702_11634047Not Available637Open in IMG/M
3300026095|Ga0207676_10083827Not Available2597Open in IMG/M
3300026118|Ga0207675_102564185All Organisms → cellular organisms → Bacteria520Open in IMG/M
3300026121|Ga0207683_10324593All Organisms → cellular organisms → Bacteria1410Open in IMG/M
3300028047|Ga0209526_10427784All Organisms → cellular organisms → Bacteria874Open in IMG/M
3300028380|Ga0268265_12662403All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria506Open in IMG/M
3300028812|Ga0247825_10019872All Organisms → cellular organisms → Bacteria → Proteobacteria4395Open in IMG/M
3300031091|Ga0308201_10126367Not Available773Open in IMG/M
(restricted) 3300031248|Ga0255312_1128989All Organisms → cellular organisms → Bacteria → Proteobacteria625Open in IMG/M
3300031547|Ga0310887_10920899All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium555Open in IMG/M
3300031562|Ga0310886_10228841All Organisms → cellular organisms → Bacteria1029Open in IMG/M
3300031708|Ga0310686_109938620All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → unclassified Sphingomonadales → Sphingomonadales bacterium530Open in IMG/M
3300031708|Ga0310686_118024086All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1118Open in IMG/M
3300031716|Ga0310813_11465061All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium635Open in IMG/M
3300031820|Ga0307473_11179933All Organisms → cellular organisms → Bacteria568Open in IMG/M
3300031854|Ga0310904_10074681All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus → Candidatus Solibacter usitatus Ellin60761782Open in IMG/M
3300031858|Ga0310892_10522351Not Available794Open in IMG/M
3300032017|Ga0310899_10031794Not Available1807Open in IMG/M
3300032075|Ga0310890_10177906All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → unclassified Sphingomonadales → Sphingomonadales bacterium1437Open in IMG/M
3300032075|Ga0310890_11506225All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus → Candidatus Solibacter usitatus Ellin6076554Open in IMG/M
3300032144|Ga0315910_11084220All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → unclassified Sphingomonadales → Sphingomonadales bacterium625Open in IMG/M
3300032955|Ga0335076_10677260All Organisms → cellular organisms → Bacteria913Open in IMG/M
3300034149|Ga0364929_0274698All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → unclassified Sphingomonadales → Sphingomonadales bacterium571Open in IMG/M
3300034820|Ga0373959_0222387All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → unclassified Sphingomonadales → Sphingomonadales bacterium507Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil12.04%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere8.33%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil7.41%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere6.48%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere5.56%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere4.63%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere4.63%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere3.70%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil2.78%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil2.78%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere2.78%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere2.78%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere2.78%
Serpentine SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil1.85%
Sugarcane Root And Bulk SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil1.85%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere1.85%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere1.85%
Corn, Switchgrass And Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere1.85%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere1.85%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere1.85%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere1.85%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere1.85%
Groundwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment0.93%
Sediment (Intertidal)Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)0.93%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil0.93%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil0.93%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere0.93%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil0.93%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil0.93%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil0.93%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil0.93%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland0.93%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil0.93%
Sandy SoilEnvironmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil0.93%
SedimentEnvironmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment0.93%
Host-AssociatedHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated0.93%
Arabidopsis Thaliana RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere0.93%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.93%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.93%
Rhizosphere SoilHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil0.93%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300002077Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3Host-AssociatedOpen in IMG/M
3300003267Sugarcane bulk soil Sample L1EnvironmentalOpen in IMG/M
3300003324Sugarcane bulk soil Sample H2EnvironmentalOpen in IMG/M
3300004114Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5EnvironmentalOpen in IMG/M
3300004463Combined assembly of Arabidopsis thaliana microbial communitiesHost-AssociatedOpen in IMG/M
3300004801Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-3 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300005093Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All BlocksEnvironmentalOpen in IMG/M
3300005294Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk SoilEnvironmentalOpen in IMG/M
3300005340Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaGEnvironmentalOpen in IMG/M
3300005353Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaGHost-AssociatedOpen in IMG/M
3300005354Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaGHost-AssociatedOpen in IMG/M
3300005355Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaGHost-AssociatedOpen in IMG/M
3300005364Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaGHost-AssociatedOpen in IMG/M
3300005455Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaGHost-AssociatedOpen in IMG/M
3300005456Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaGHost-AssociatedOpen in IMG/M
3300005457Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaGHost-AssociatedOpen in IMG/M
3300005459Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2Host-AssociatedOpen in IMG/M
3300005466Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaGEnvironmentalOpen in IMG/M
3300005471Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaGEnvironmentalOpen in IMG/M
3300005535Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaGEnvironmentalOpen in IMG/M
3300005539Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2Host-AssociatedOpen in IMG/M
3300005546Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaGEnvironmentalOpen in IMG/M
3300005614Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2Host-AssociatedOpen in IMG/M
3300005618Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2Host-AssociatedOpen in IMG/M
3300005718Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2Host-AssociatedOpen in IMG/M
3300005834Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2Host-AssociatedOpen in IMG/M
3300005836Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.42_YBBEnvironmentalOpen in IMG/M
3300005840Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2Host-AssociatedOpen in IMG/M
3300005841Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2Host-AssociatedOpen in IMG/M
3300005842Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2Host-AssociatedOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300006881Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2Host-AssociatedOpen in IMG/M
3300009098Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaGHost-AssociatedOpen in IMG/M
3300009156Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)Host-AssociatedOpen in IMG/M
3300010036Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26EnvironmentalOpen in IMG/M
3300010040Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55EnvironmentalOpen in IMG/M
3300010360Tropical forest soil microbial communities from Panama - MetaG Plot_6EnvironmentalOpen in IMG/M
3300010396Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2EnvironmentalOpen in IMG/M
3300010397Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4EnvironmentalOpen in IMG/M
3300010401Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1EnvironmentalOpen in IMG/M
3300011119Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaGHost-AssociatedOpen in IMG/M
3300012200Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012212Combined assembly of Hopland grassland soilHost-AssociatedOpen in IMG/M
3300012469Combined assembly of Soil carbon rhizosphereHost-AssociatedOpen in IMG/M
3300012486Unplanted soil (control) microbial communities from North Carolina - M.Soil.8.old.120510EnvironmentalOpen in IMG/M
3300012893Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S059-202B-1EnvironmentalOpen in IMG/M
3300012905Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S013-104B-2EnvironmentalOpen in IMG/M
3300012907Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S044-104R-1EnvironmentalOpen in IMG/M
3300013100Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaGHost-AssociatedOpen in IMG/M
3300014969Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaGHost-AssociatedOpen in IMG/M
3300015200Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)EnvironmentalOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300018064Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MGEnvironmentalOpen in IMG/M
3300018429Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 TEnvironmentalOpen in IMG/M
3300018469Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 TEnvironmentalOpen in IMG/M
3300018476Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 TEnvironmentalOpen in IMG/M
3300021082Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_coex redoEnvironmentalOpen in IMG/M
3300021406Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-OEnvironmentalOpen in IMG/M
3300022880Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S106-311C-6EnvironmentalOpen in IMG/M
3300025315Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)Host-AssociatedOpen in IMG/M
3300025885Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025903Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025912Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025923Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025931Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025934Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025945Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025960Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026035Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026078Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026095Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026118Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026121Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300028047Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300028380Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300028812Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48EnvironmentalOpen in IMG/M
3300031091Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_355 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031248 (restricted)Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH5_T0_E5EnvironmentalOpen in IMG/M
3300031547Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4EnvironmentalOpen in IMG/M
3300031562Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3EnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031716Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3EnvironmentalOpen in IMG/M
3300031820Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515EnvironmentalOpen in IMG/M
3300031854Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1EnvironmentalOpen in IMG/M
3300031858Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2EnvironmentalOpen in IMG/M
3300032017Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D4EnvironmentalOpen in IMG/M
3300032075Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3EnvironmentalOpen in IMG/M
3300032144Garden soil microbial communities collected in Santa Monica, California, United States - Edamame soilEnvironmentalOpen in IMG/M
3300032955Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5EnvironmentalOpen in IMG/M
3300034149Sediment microbial communities from East River floodplain, Colorado, United States - 20_j17EnvironmentalOpen in IMG/M
3300034820Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_2Host-AssociatedOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
JGI24744J21845_1007210013300002077Corn, Switchgrass And Miscanthus RhizosphereVFDASKTMVDHAKAKGVNVTWLPVIGGQHVDAWAQPEILKQTFDFFDKYKAKQK*
soilL1_1013561723300003267Sugarcane Root And Bulk SoilHGDMDTTMVFSASEAMVQHAKAKGVDATWLPVPGGAHTDAWAQPAIVNQIFDFFDAHKTKTK*
soilH2_1031881823300003324Sugarcane Root And Bulk SoilGDMDTTMVFSASEAMVQHAKAKGVDATWLPVPGGAHTDAWAQPAIVNQIFDFFDAHKTKTK*
Ga0062593_10092670633300004114SoilDTTMVFDASKTMVDHAKAKGIDATWLPVPGGAHTDAWAQQEILNKTFDFFDAHKTKLK*
Ga0063356_10227705913300004463Arabidopsis Thaliana RhizosphereTTMVFDASKTMVDHAKAKGIDATWLPVPGGAHTDAWAQQEILNKTFDFFDAHKAKLK*
Ga0058860_1201591923300004801Host-AssociatedGDMDTTMVFDASKTMVDHAKAKGLNVTWLPVVGGQHVDAWAQPEILKQTFDFFDKYKTKQK*
Ga0062594_10107837623300005093SoilVVHGDMDTTMVFDASKTMVDHAKAKGIDATWLPVPGGAHTDAWAQQEILNKTFDFFDAHKTKLK*
Ga0062594_10185032913300005093SoilLVIHGDMDTTMVFSASEAMVQHAKAKGVNATWLPVPGGAHTDAWAQPAIIGQIFDFFDAHKTKSR*
Ga0065705_1116798513300005294Switchgrass RhizosphereHGDADTTMVFSASQAMVEHAKAKGVDATWLPVAGGAHTDAWAQPEILNQIFDFFDAHKAKAR*
Ga0070689_10033355413300005340Switchgrass RhizosphereHGDMDTVMVFDASKTMVDHAKAKGVNATWLPVAGGMHTDAWAQPEVISQIFDFFDKYKKK
Ga0070669_10123625423300005353Switchgrass RhizosphereVLVVHGDMDTTMVFDASKVMVDHAKAKGVNVTWLPVIGGAHVDAWAQPDILKQTFDFFDKNPTKKK*
Ga0070675_10029529013300005354Miscanthus RhizospherePVLYVHGDGDTTMDYAAGKAMIDRAKARGVNATFLGVQGGIHTDAWAQPEIIKQIFDFFDAHKTKAK*
Ga0070675_10175433813300005354Miscanthus RhizosphereLVVHGDMDTTMVFDASKVMVDHAKAKGVNVTWLPVIGGAHVDAWAQPDILKQTFDFFDKNPTKKK*
Ga0070671_10134326313300005355Switchgrass RhizosphereDTVMVFDASKTMVDHAKAKGVNATWLPVAGGMHTDAWAQPEIISQIFDFFDNYRKK*
Ga0070673_10011229443300005364Switchgrass RhizosphereVLVIHGDMDTTMVFDASKTMVDHAKAKGVDATWLPVAGGLHTDAWAQPEIIAKIFDFFDAHPRK*
Ga0070673_10023687343300005364Switchgrass RhizosphereVFYVHGDGDTTMDFNAGKAMIDRAKAKGVNATFLGVAGGQHTDAWAQPEVIKQIFDFFDANKTKLK*
Ga0070673_10190477013300005364Switchgrass RhizosphereHGDMDTTMVFDGSKVMVDHAKAKGVNATWLPVVGGMHIDAWAQPEILKQTFDFFDKYKTKQK*
Ga0070663_10046796613300005455Corn RhizosphereVLVIHGDMDTTMVFDASKTMVDHAKAKGVDATWLPVAGGLHTDAWAQPEIIAKIFDFFDSHPRK*
Ga0070678_10026070313300005456Miscanthus RhizosphereGDMDTTMVFDASKTMVDHAQAKGVNATWLPVPGGLHTDAWAQPEIIAKIFDFFDSHPRK*
Ga0070662_10078403523300005457Corn RhizosphereDASKTMVDHAKAKGLNVTWLPVVGGQHVDAWAQPEILKQTFDFFDKYKTKQK*
Ga0068867_10061718613300005459Miscanthus RhizosphereLVIHGDMDTTMVFDASKTMVDHAQAKGVDATWLPVAGGLHTDAWAQPEVIAKIFDFFDTHARK*
Ga0068867_10157857523300005459Miscanthus RhizosphereDMDTTMVFAASKTMVDHAREKGVDATWLPVAGGLHTDAWAQPEIITQIFDFFDKRAAKAK
Ga0070685_1094561913300005466Switchgrass RhizosphereLVVHGDMDTTMVFEASKAMVDHATAKGLNVTWLPVIGGAHVDAWAQPEILKQTFDFFDKNATKKK*
Ga0070698_10015832943300005471Corn, Switchgrass And Miscanthus RhizosphereGDMDTTMVFDASKVMLDHAKEKGVNVTWLPVIGGAHVDAWAQPDILKQTFDFFDKNPTKKK*
Ga0070684_10165389413300005535Corn RhizosphereMVFDGSKAMVDHAKAKGVDATWLPVIGGTHVDAWAQPEILKQTFDFFDAHKKKR*
Ga0068853_10117003823300005539Corn RhizosphereMVFDASKTMVDHAKAKGVDVAWLPVAGGKHVDAWAQPEIITQIFDFFDKHKMKTR*
Ga0070696_10161546523300005546Corn, Switchgrass And Miscanthus RhizosphereGDMDTTMVFSASQTMVEHAKAKGVSATWLPVPGGAHTDAWAQPAIISQIFDFFDAHRAKLK*
Ga0068856_10058244423300005614Corn RhizosphereKKVPVLVVHGDQDIVMVFDASKAMVDHAKAQGVDATWLPVVGGAHVDAWAQPEVIKQIFDFFDAHKK*
Ga0068864_10012558953300005618Switchgrass RhizosphereFDASKTMVDHAKAKGIDATWLPVPGGAHTDAWAQQEILNKTFDFFDAHKTKLK*
Ga0068866_1053208823300005718Miscanthus RhizosphereHGDMDTTMVFDASKTMVDHAKAKGVNVTWLPVIGGQHVDAWAQPEILKQTFDFFDKYKAKQK*
Ga0068851_1091579723300005834Corn RhizosphereTMVFDASKTMVDHAKAKGLNVTWLPVVGGQHVDAWAQPEILKQTFDFFDKYKTKQK*
Ga0074470_1089614323300005836Sediment (Intertidal)AVPGDNDKAMVFAGSKAMVDHARAKGVDATWLPVAGGGHVDAWAQPDVINQMFDFFDAHPGKQ*
Ga0068870_1021649723300005840Miscanthus RhizosphereNIPVFYVHGDGDTTMDFNAGKAMIDRAKAKGVNATFVGVVGGQHTDAWAQPEIIKQIFDFFDANKTKLK*
Ga0068870_1024172623300005840Miscanthus RhizosphereVMVFDASKTMVDHAKAKGVNATWLPVAGGMHTDAWAQPEIISQIFDFFDKYRKK*
Ga0068863_10150490833300005841Switchgrass RhizosphereGDMDTTMVFSASETMVQHAKAKGVSATWLPVPGGAHTDAWAQPAIISQIFDFFDAHKTKMK*
Ga0068858_10009145913300005842Switchgrass RhizosphereMDFNAGKAMIDRAKAKGVNATFLGVAGGQHTDAWAQPEVIKQIFDFFDANKTKLK*
Ga0075425_10165780213300006854Populus RhizosphereVIHGDADTTMVFSASESMVEHAKAKGVDATWLPVPGGAHTDAWAQPEIVNRIFDFFDAHKTKMK*
Ga0068865_10167747823300006881Miscanthus RhizosphereMNFDASKTMVDHAKAKGVNATWLPVQGGAHTDAWAQPAVIAQIFDFFGMHKK*
Ga0105245_1273452633300009098Miscanthus RhizosphereVFSASEAMVEHAKAKGVDATWLPVAGGAHTDAWAQPEIVNRIFDFFDAHKAKMK*
Ga0111538_1040497123300009156Populus RhizosphereMDTTMVFDASKVMVDHAKAKGIDATWLPVPGGAHTDAWAQQDVLNKTFDFFDAHKTKLK*
Ga0126305_1032814513300010036Serpentine SoilVLVVHGDMDTTMVFEGSKMMVDHAKGKGVNATWLPVIGGAHTDAWAQPDILKQTFDFFDAHKARQK*
Ga0126308_1002498853300010040Serpentine SoilKNVPVLVVHGDMDTTMAFDASKAMVDHATATAVNVTWLPVIGGAHVDAWAQPDILKQTFDFFDKNVAKRK*
Ga0126372_1010446933300010360Tropical Forest SoilVFDASKTMVDHAKARGVDATWLPVPGGKHVDAWAQPEILGQIFDFFDRHVAKAK*
Ga0134126_1121941213300010396Terrestrial SoilKNVPVLVVHGDMDTTMVFDASKAMVEHAKAKGVDATCLPVIGGTHVDAWAQPEILKKTFDFFDAHRKKKG*
Ga0134124_1267979013300010397Terrestrial SoilKHVPVLVIHGDKDNVMNFDASKTMVDHAKAKGVNATWLPVQGGAHTDAWAQPAVIAQIFDFFGMHKK*
Ga0134121_1167729423300010401Terrestrial SoilFEASKVMVDHAKAKGVEATWLPVIGGKHVDAWAQPEIINQIFDFFDAHKTKAR*
Ga0105246_1003990713300011119Miscanthus RhizosphereMDTTMVFDASKTMVDHAQAKGVNATWLPVPGGLHTDAWAQPEIIAKIFDFFDSHPRK*
Ga0137382_1130701923300012200Vadose Zone SoilDTTMVFDASKLMVDHAKAKGVDATWLPVPGGKHVDAWAQPEIIAKIFDFFDAHKTKAR*
Ga0150985_10032015223300012212Avena Fatua RhizosphereFDGSKAMVDHAKAKGLNVTWLPVIGGQHVDAWAQPEIIKQTFDFFDKYKTKQK*
Ga0150985_10405203323300012212Avena Fatua RhizosphereVLVVHGDMDTTMVFEGSKVMVDHAKAKGVNATWLPVIGGMHTDAWAQPEILKQTFDFFDKYKARQK*
Ga0150985_10883446313300012212Avena Fatua RhizosphereVHGDMDTTMVFEGSKVMVDHAKAKGVNATWLPVIGGAHTDAWAQPEILKQTFDFFDAHKARQK*
Ga0150985_11815941313300012212Avena Fatua RhizosphereHGDGDTTMDFNAGKAMIDRAKAKGVNATFVGVAGGQHTDAWAQPEIIKQIFDFFDANKTKRK*
Ga0150985_12131371313300012212Avena Fatua RhizosphereDKDTTMVFDASKTMVDHAKAKGLNVTWLPVIGGQHVDAWALPEVISQEFDFFDKYKTKQGKAAAPRSGRN*
Ga0150984_10399571023300012469Avena Fatua RhizosphereVLVVHGDKDNVMNFEASKAMVDHAKAKGVDATWLPVQGGAHTDAWAQPAVIAQIFDFFDAHRK*
Ga0150984_10474090323300012469Avena Fatua RhizosphereHGDMDTTMVFDASKTMVDHAKAKGLNVTWLPVIGGQHVDAWAQPEIINQTFDFFDKYKAKQK*
Ga0157331_103933213300012486SoilDADTTMVFSASQSMVEHAKAKGVDATWLPVAGGAHTDAWAQPEILKQIFDFFDTHKTKGK
Ga0157284_1030039113300012893SoilMVFDASKTMVDHAKAKGIDATWLPVPGGAHTDAWAQQEILNKTFDFFDAHKTKLK*
Ga0157296_1015822823300012905SoilMVFDASKTMVDHAKAKGIDATWLPVPGGAHADAWAQQEILNKTFDFFDAHKTKLK*
Ga0157283_1016245623300012907SoilVFDASKTMVDHAKAKGIDATWLPVPGGAHTDAWAQQEILNKTFDFFDAHKTKLK*
Ga0157373_1150835013300013100Corn RhizosphereGDKDTVMVFEASKAMVDHAKAKGVDVTWLPVIGGGHVDAWARPEVIEQIFDFFNAHVMSARRSAD*
Ga0157376_1217104013300014969Miscanthus RhizosphereTTMDFNAGKAMIDRAKTKGVNATFMGVTGGQHTDAWAQPEIIKQIFDFFDANNTKLK*
Ga0173480_1003758053300015200SoilLKNIPVFYVHGDGDTTMDFNAGKAMIDRAKAKGVNATFLGVTGGQHTDAWAQPEIIKQIFDFYDANKTKGK*
Ga0132258_1284117033300015371Arabidopsis RhizosphereVVHGDMDTTMVFDASKVMVDHAKAKGVDATWLPVPGGAHTDAWAQPEILNKTFDFFDAHKARSK*
Ga0132258_1384047133300015371Arabidopsis RhizosphereVLVIHGDMDTTMVFDASRTMVDHAKAKGVDATWLPVAGGMHTDAWAQPEIITKIFDFFDAHPRK*
Ga0132258_1387615233300015371Arabidopsis RhizospherePVLVVHGDMDTTMVFDASKAMVDHAAAKGINVTWLPVIGGAHVDAWAQPEILKQTFDFFEKNAAKKK*
Ga0132255_10339582223300015374Arabidopsis RhizosphereVPVLVVHGDMDTTMVFDGSKAMVDHAKAKGLNVTWLPVVGGQHVDAWAQPEILKQTFDFFDKYKAKQK*
Ga0132255_10463660913300015374Arabidopsis RhizosphereKNLPVLVVHGDMDTTMVFAASKTMVDHAKAKGLNVTWLPVIGGAHVDAWAQPDIIKQTFDFFDKNATKKK*
Ga0187773_1101041123300018064Tropical PeatlandLVVHGDMDTTMVFEASKVMVDHAVAKGVNATWLPVPGGKHVDAWAQPGIISQVFDFFDKHASKAK
Ga0190272_1276979023300018429SoilSFEASKVMVDHAKAKGVDVTWLPVTGGAHTDAWAQPEILTQTFDFFDRYRTKKK
Ga0190270_1097658213300018469SoilGDMDTTMSFEASKVMVDHAKAKGVDVTWLPVTGGAHTDAWAQPDILKQTFDFFDKYRTKK
Ga0190274_1384804223300018476SoilTVPVLVVHGDMDTTMVFDGSKVMVDHAKAKGVNATWLPVIGGAHTDAWAQPEILTQTFDFFDKYKTKQK
Ga0210380_1041532723300021082Groundwater SedimentVLVVHGDMDTTMVFDGSKVMVDHAKAKGVNATWLPVIGGAHTDAWAQPEILKQTFDFFDKYKTKQK
Ga0210386_1099736723300021406SoilTVMVFDASKAMVDHAKAKGVDATWLPVAGGAHTDAWAQPAVIEQIFDFFDAHRKKG
Ga0247792_113114323300022880SoilVFDASKTMVDHAKAKGLNVTWLPVVGGQHVDAWAQPEILKQTFDFFDKYKTKQK
Ga0207697_1027619513300025315Corn, Switchgrass And Miscanthus RhizosphereMVFDASKTMVDHAKAKGVNVTWLPVIGGQHVDAWAQPEILKQTFDFFDKYKAKQK
Ga0207653_1019058923300025885Corn, Switchgrass And Miscanthus RhizosphereHGDMDTTMVFSASEAMVQHAKAKGVNATWLPVPGGAHTDAWAQPAIIGQIFDFFDAHKTKSR
Ga0207680_1093075413300025903Switchgrass RhizosphereHGDMDTTMVFSASETMVQHAKAKGVSATWLPVPGGAHTDAWAQPAIISQIFDFFDAHKTKMK
Ga0207707_1025517723300025912Corn RhizosphereKLRKVAVLVVHGDKDSSMVFDASKAMVEHAKAKGVAATWLPVTGGMHTDAWAQPEVIKQIFDFFDAHKKKG
Ga0207681_1108598813300025923Switchgrass RhizosphereVHGDMDTTMVVDASKVMVDHAKAKGVNVTWLPVIGGAHVDAWAQPDILKQTFDFFDKNPTKKK
Ga0207644_1118817113300025931Switchgrass RhizosphereVFEGSKVMVDHAKAKGVNATWLPVIGGAHTDAWAQPEILKQTFDFFDAHQARQK
Ga0207686_1109188023300025934Miscanthus RhizosphereVVHGDMDTTMVFEGSKVMVDHAKAKGVNATWLPVVGGMHTDAWAQPEILKQTFDFFDKYKTKQK
Ga0207679_1219752313300025945Corn RhizosphereGDMDATMVFDASKTMVDHAQAKGVDATWLPVPGGLHTDAWAQPEIVAKIFDFFDAHPRK
Ga0207651_1202712613300025960Switchgrass RhizosphereGDMDTVMVFDASKTMVDHAKAKGVNATWLPVVGGMHTDAWAQPEIISQIFDFFDKYRKK
Ga0207703_1026108113300026035Switchgrass RhizosphereMDFNAGKAMIDRAKAKGVNATFLGVAGGQHTDAWAQPEVIKQIFDFFDANKTKLK
Ga0207702_1163404713300026078Corn RhizosphereMVFDASKAMVDHAKAKGVDATWLPVIGGTHVDAWAQPEILKQTFDFFDAHKKKR
Ga0207676_1008382753300026095Switchgrass RhizosphereMVFDASKTMVDHAKAKGIDATWLPVPGGAHTDAWAQQEILNKTFDFFDAHKTKLK
Ga0207675_10256418513300026118Switchgrass RhizosphereVHGDMDTTMVFDGSKVMVDHAKAKGVDATWLPVVGGSHVDAWAQPPVIAKIFDFFDAHGR
Ga0207683_1032459313300026121Miscanthus RhizosphereHGDMDTTMVFDASKTMVDHAQAKGVNATWLPVPGGLHTDAWAQPEIIAKIFDFFDSHPRK
Ga0209526_1042778423300028047Forest SoilVLVVHGDMDTTMVFDASKAMVDHARAKGIDATWLPVAGGMHTDAWAQPEIIKQIFDFFDRHPTKAK
Ga0268265_1266240323300028380Switchgrass RhizosphereVLVVHGDKDNVMDFEGSKAMVDHAKAKGVDATWLPVAGGGHTDAWAQPSVLNQIFDFFDAHRKKS
Ga0247825_1001987213300028812SoilDDEHGDMDTTMVFDGSKVMVDHAKAKGVNATWLPVVGGAHTDAWAQPEILKQTFDFYDKYETKQK
Ga0308201_1012636713300031091SoilMVFEGSKVMVDHAKAKGVNATWLPVIGGAHTDAWAQPEILKQTFDFFDAHQARQK
(restricted) Ga0255312_112898923300031248Sandy SoilLVVHGDMDTTMVFDASKVMVDHAKAKGVNVTWLPVIGGAHVDAWAQPDILKQTFDFFDKNTTKKK
Ga0310887_1092089913300031547SoilMLFSASETMVAHAKAKGVDATWLPVPGGAHTDAWAQPAIISQIFDFFDAHRTKLK
Ga0310886_1022884113300031562SoilLVIHGDMDTTMLFSASETMVAHAKAKGVDATWLPVPGGAHTDAWAQPAIISQIFDFFDAHRTKLK
Ga0310686_10993862013300031708SoilDKDTVMVFDASKAMVDHAKAKGVDATWLPVPGGAHTDAWAQPEVIEQIFDFFDAHRKTG
Ga0310686_11802408633300031708SoilLKKVPVLVIHGDKDTVMVFDASKAMVDHAKAKGLDVTWLPVIGGMHVDAWAQPDVIKQIFDFFDAHKKKG
Ga0310813_1146506113300031716SoilKLKSVPVLVVHGDMDTTMVFDASKVMVDHAKAKAIDATWLPVPGGAHTDAWAQQEILNKTFDFFDAHKTKVK
Ga0307473_1117993313300031820Hardwood Forest SoilVLVVHGDMDTTMVFEASRVMVDHAKAKGLDATWLPVVGGKHTDAWAQPEIVAQIFDFFDKHITKVK
Ga0310904_1007468143300031854SoilMVFSASETMVQHAKAKGVSATWLPVPGGAHTDAWAQPAIISQIFDFFDAHKTKTK
Ga0310892_1052235123300031858SoilVFSASETMVQHAKAKGVSATWLPVPGGAHTDAWAQPAVINQIFDFFDAHKTKAK
Ga0310899_1003179413300032017SoilLVIHGDMDTTMVFSASETMVQHAKAKGVSATWLPVPGGAHTDAWAQPAVINQIFDFFDAHKTKAK
Ga0310890_1017790613300032075SoilVLVVHGDMDTTMVFDASKTMVDHAKAKGIDATWLPVPGGAHTDAWAQQEILNKTFDFFDAHKTKLK
Ga0310890_1150622543300032075SoilVFSASETMVQHAKAKGVSATWLPVPGGAHTDAWAQPAIISQIFDFFDAHKTKTK
Ga0315910_1108422023300032144SoilMEFAASEKMVEHAKAKGVSATWLPVPGGAHTDAWAQPAIINQIFDFFDAHRTKVN
Ga0335076_1067726023300032955SoilTTMVFEASKVMVDHAVAKGVDATWLPVPGGKHVDAWAQPEIISQVFDFFDKHVGKAR
Ga0364929_0274698_359_5653300034149SedimentVPVLVVHGDMDTTMVFEASKAMVDHATAKAVNVTWLPVIGGAHVDAWAQPDILKQTFDFFDKNAIKKK
Ga0373959_0222387_320_4993300034820Rhizosphere SoilMDTTMVFEASKAMVDHAKAKGVDATWLPVIGGKHVDAWAQPEIINQIFDFFDAHKTKAH

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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