NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F090032

Metagenome / Metatranscriptome Family F090032

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F090032
Family Type Metagenome / Metatranscriptome
Number of Sequences 108
Average Sequence Length 91 residues
Representative Sequence LGAMPQNEKTKEPFDPFADPAEELIKRAERSAKEKRFNELKAAAAELKELSQMMSDEIEAGGKDVISAKMWTNLDRAEKLVKTMREKAK
Number of Associated Samples 94
Number of Associated Scaffolds 108

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 48.60 %
% of genes near scaffold ends (potentially truncated) 59.26 %
% of genes from short scaffolds (< 2000 bps) 87.96 %
Associated GOLD sequencing projects 80
AlphaFold2 3D model prediction Yes
3D model pTM-score0.56

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (51.852 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere
(10.185 % of family members)
Environment Ontology (ENVO) Unclassified
(38.889 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(63.889 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 56.41%    β-sheet: 0.00%    Coil/Unstructured: 43.59%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.56
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 108 Family Scaffolds
PF00543P-II 56.48
PF09335SNARE_assoc 21.30
PF01966HD 0.93
PF01842ACT 0.93
PF01066CDP-OH_P_transf 0.93
PF02470MlaD 0.93

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 108 Family Scaffolds
COG0347Nitrogen regulatory protein PIISignal transduction mechanisms [T] 56.48
COG0398Uncharacterized membrane protein YdjX, related to fungal oxalate transporter, TVP38/TMEM64 familyFunction unknown [S] 21.30
COG0586Membrane integrity protein DedA, putative transporter, DedA/Tvp38 familyCell wall/membrane/envelope biogenesis [M] 21.30
COG1238Uncharacterized membrane protein YqaA, VTT domainFunction unknown [S] 21.30
COG0558Phosphatidylglycerophosphate synthaseLipid transport and metabolism [I] 0.93
COG1183Phosphatidylserine synthaseLipid transport and metabolism [I] 0.93
COG5050sn-1,2-diacylglycerol ethanolamine- and cholinephosphotranferasesLipid transport and metabolism [I] 0.93

 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms51.85 %
UnclassifiedrootN/A48.15 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000891|JGI10214J12806_13845066Not Available862Open in IMG/M
3300004022|Ga0055432_10197394Not Available577Open in IMG/M
3300004114|Ga0062593_102891005Not Available549Open in IMG/M
3300004156|Ga0062589_102325120All Organisms → cellular organisms → Bacteria551Open in IMG/M
3300004463|Ga0063356_100210567All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp.2305Open in IMG/M
3300004463|Ga0063356_100995165All Organisms → cellular organisms → Bacteria → Acidobacteria1196Open in IMG/M
3300004463|Ga0063356_101510436All Organisms → cellular organisms → Bacteria → Acidobacteria995Open in IMG/M
3300004643|Ga0062591_101239513Not Available729Open in IMG/M
3300004801|Ga0058860_11875626All Organisms → cellular organisms → Bacteria960Open in IMG/M
3300005289|Ga0065704_10662698Not Available577Open in IMG/M
3300005290|Ga0065712_10227571All Organisms → cellular organisms → Bacteria1005Open in IMG/M
3300005294|Ga0065705_10947304All Organisms → cellular organisms → Bacteria → Acidobacteria562Open in IMG/M
3300005331|Ga0070670_100054252All Organisms → cellular organisms → Bacteria3441Open in IMG/M
3300005331|Ga0070670_101556894All Organisms → cellular organisms → Bacteria → Acidobacteria607Open in IMG/M
3300005332|Ga0066388_101656297All Organisms → cellular organisms → Bacteria1129Open in IMG/M
3300005334|Ga0068869_100104190All Organisms → cellular organisms → Bacteria2150Open in IMG/M
3300005336|Ga0070680_101204090Not Available655Open in IMG/M
3300005338|Ga0068868_101215322All Organisms → cellular organisms → Bacteria697Open in IMG/M
3300005338|Ga0068868_102261031Not Available518Open in IMG/M
3300005340|Ga0070689_100116319All Organisms → cellular organisms → Bacteria2132Open in IMG/M
3300005347|Ga0070668_100810982All Organisms → cellular organisms → Bacteria → Acidobacteria832Open in IMG/M
3300005354|Ga0070675_100161712All Organisms → cellular organisms → Bacteria1926Open in IMG/M
3300005355|Ga0070671_100012966All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae6716Open in IMG/M
3300005364|Ga0070673_101250443All Organisms → cellular organisms → Bacteria → Acidobacteria696Open in IMG/M
3300005365|Ga0070688_101022465Not Available657Open in IMG/M
3300005440|Ga0070705_100962969All Organisms → cellular organisms → Bacteria690Open in IMG/M
3300005459|Ga0068867_101331005All Organisms → cellular organisms → Bacteria664Open in IMG/M
3300005549|Ga0070704_100903664Not Available794Open in IMG/M
3300005617|Ga0068859_101229473Not Available825Open in IMG/M
3300005618|Ga0068864_100733513All Organisms → cellular organisms → Bacteria → Acidobacteria967Open in IMG/M
3300005618|Ga0068864_101005103All Organisms → cellular organisms → Bacteria → Acidobacteria827Open in IMG/M
3300005713|Ga0066905_102062024All Organisms → cellular organisms → Bacteria530Open in IMG/M
3300005719|Ga0068861_102571670All Organisms → cellular organisms → Bacteria513Open in IMG/M
3300005840|Ga0068870_10262010All Organisms → cellular organisms → Bacteria → Acidobacteria1076Open in IMG/M
3300005842|Ga0068858_101553021Not Available653Open in IMG/M
3300005844|Ga0068862_102078325Not Available579Open in IMG/M
3300006844|Ga0075428_102405035Not Available541Open in IMG/M
3300006881|Ga0068865_100919871Not Available762Open in IMG/M
3300006881|Ga0068865_101501671All Organisms → cellular organisms → Bacteria604Open in IMG/M
3300006969|Ga0075419_10913427All Organisms → cellular organisms → Bacteria634Open in IMG/M
3300007004|Ga0079218_10136013All Organisms → cellular organisms → Bacteria1765Open in IMG/M
3300009094|Ga0111539_10039010All Organisms → cellular organisms → Bacteria → Acidobacteria5727Open in IMG/M
3300009094|Ga0111539_11190722Not Available885Open in IMG/M
3300009100|Ga0075418_10423625All Organisms → cellular organisms → Bacteria1425Open in IMG/M
3300009156|Ga0111538_10280979All Organisms → cellular organisms → Bacteria2107Open in IMG/M
3300009176|Ga0105242_10969804Not Available856Open in IMG/M
3300009177|Ga0105248_11321038Not Available816Open in IMG/M
3300010362|Ga0126377_11223450Not Available822Open in IMG/M
3300010366|Ga0126379_12186894Not Available654Open in IMG/M
3300010401|Ga0134121_12433228All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp.565Open in IMG/M
3300010403|Ga0134123_13327889Not Available519Open in IMG/M
3300011119|Ga0105246_10370778All Organisms → cellular organisms → Bacteria → Acidobacteria1179Open in IMG/M
3300012212|Ga0150985_122014545Not Available757Open in IMG/M
3300012891|Ga0157305_10226259Not Available550Open in IMG/M
3300012897|Ga0157285_10292769All Organisms → cellular organisms → Bacteria → Acidobacteria551Open in IMG/M
3300012907|Ga0157283_10044633All Organisms → cellular organisms → Bacteria987Open in IMG/M
3300012908|Ga0157286_10207004Not Available665Open in IMG/M
3300012912|Ga0157306_10072869Not Available928Open in IMG/M
3300012916|Ga0157310_10365462Not Available588Open in IMG/M
3300012948|Ga0126375_11877021Not Available525Open in IMG/M
3300012971|Ga0126369_10269510All Organisms → cellular organisms → Bacteria1686Open in IMG/M
3300013308|Ga0157375_11561082Not Available780Open in IMG/M
3300014326|Ga0157380_10004456All Organisms → cellular organisms → Bacteria9698Open in IMG/M
3300015371|Ga0132258_11104134All Organisms → cellular organisms → Bacteria → Acidobacteria2005Open in IMG/M
3300015373|Ga0132257_101976682Not Available752Open in IMG/M
3300015373|Ga0132257_102003190Not Available747Open in IMG/M
3300015373|Ga0132257_102358940All Organisms → cellular organisms → Bacteria → Acidobacteria690Open in IMG/M
3300018053|Ga0184626_10098286Not Available1240Open in IMG/M
3300018076|Ga0184609_10282827Not Available776Open in IMG/M
3300018083|Ga0184628_10579282Not Available570Open in IMG/M
3300019356|Ga0173481_10759332Not Available531Open in IMG/M
3300022899|Ga0247795_1102125Not Available512Open in IMG/M
3300025535|Ga0207423_1083557Not Available578Open in IMG/M
3300025903|Ga0207680_10079433All Organisms → cellular organisms → Bacteria2057Open in IMG/M
3300025903|Ga0207680_10638579Not Available762Open in IMG/M
3300025908|Ga0207643_10239550Not Available1115Open in IMG/M
3300025908|Ga0207643_10515989All Organisms → cellular organisms → Bacteria → Acidobacteria765Open in IMG/M
3300025917|Ga0207660_10967275Not Available694Open in IMG/M
3300025920|Ga0207649_10796681Not Available737Open in IMG/M
3300025926|Ga0207659_11163163All Organisms → cellular organisms → Bacteria → Acidobacteria663Open in IMG/M
3300025930|Ga0207701_10387517All Organisms → cellular organisms → Bacteria1205Open in IMG/M
3300025931|Ga0207644_10009301All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae6451Open in IMG/M
3300025938|Ga0207704_11868595Not Available516Open in IMG/M
3300025940|Ga0207691_11546042Not Available541Open in IMG/M
3300025941|Ga0207711_11089319Not Available740Open in IMG/M
3300025961|Ga0207712_11081660All Organisms → cellular organisms → Bacteria → Acidobacteria713Open in IMG/M
3300026023|Ga0207677_11751167Not Available576Open in IMG/M
3300026095|Ga0207676_10866542All Organisms → cellular organisms → Bacteria → Acidobacteria884Open in IMG/M
3300026095|Ga0207676_11158337All Organisms → cellular organisms → Bacteria → Acidobacteria765Open in IMG/M
3300026118|Ga0207675_102149973Not Available574Open in IMG/M
3300026121|Ga0207683_11643976Not Available592Open in IMG/M
3300027717|Ga0209998_10125509All Organisms → cellular organisms → Bacteria → Acidobacteria649Open in IMG/M
3300027886|Ga0209486_10102086All Organisms → cellular organisms → Bacteria → Acidobacteria1524Open in IMG/M
3300027907|Ga0207428_10410652All Organisms → cellular organisms → Bacteria → Acidobacteria990Open in IMG/M
3300028380|Ga0268265_11761332All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → Niastella → Niastella soli626Open in IMG/M
3300031547|Ga0310887_10098680All Organisms → cellular organisms → Bacteria1443Open in IMG/M
3300031740|Ga0307468_102405882Not Available514Open in IMG/M
3300031854|Ga0310904_10183790All Organisms → cellular organisms → Bacteria → Acidobacteria1246Open in IMG/M
3300031854|Ga0310904_11330324All Organisms → cellular organisms → Bacteria → Acidobacteria521Open in IMG/M
3300031940|Ga0310901_10530588Not Available531Open in IMG/M
3300032017|Ga0310899_10151672Not Available990Open in IMG/M
3300032122|Ga0310895_10062851All Organisms → cellular organisms → Bacteria → Acidobacteria1405Open in IMG/M
3300032157|Ga0315912_10044102All Organisms → cellular organisms → Bacteria3543Open in IMG/M
3300034147|Ga0364925_0068037All Organisms → cellular organisms → Bacteria → Acidobacteria1231Open in IMG/M
3300034662|Ga0314783_045622Not Available809Open in IMG/M
3300034668|Ga0314793_042951Not Available804Open in IMG/M
3300034668|Ga0314793_051683Not Available756Open in IMG/M


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere10.19%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere9.26%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil8.33%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil8.33%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere7.41%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere6.48%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil3.70%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere3.70%
Arabidopsis Thaliana RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere3.70%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment2.78%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil2.78%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere2.78%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere2.78%
Natural And Restored WetlandsEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands1.85%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil1.85%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil1.85%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil1.85%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere1.85%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere1.85%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere1.85%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.85%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere0.93%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil0.93%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil0.93%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere0.93%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil0.93%
SedimentEnvironmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment0.93%
Host-AssociatedHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated0.93%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere0.93%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere0.93%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere0.93%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere0.93%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.93%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.93%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere0.93%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000891Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soilEnvironmentalOpen in IMG/M
3300004022Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqA_D1EnvironmentalOpen in IMG/M
3300004114Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5EnvironmentalOpen in IMG/M
3300004156Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1EnvironmentalOpen in IMG/M
3300004463Combined assembly of Arabidopsis thaliana microbial communitiesHost-AssociatedOpen in IMG/M
3300004643Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3EnvironmentalOpen in IMG/M
3300004801Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-3 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300005289Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2Host-AssociatedOpen in IMG/M
3300005290Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1Host-AssociatedOpen in IMG/M
3300005294Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk SoilEnvironmentalOpen in IMG/M
3300005331Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaGHost-AssociatedOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005334Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2Host-AssociatedOpen in IMG/M
3300005336Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaGEnvironmentalOpen in IMG/M
3300005338Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2Host-AssociatedOpen in IMG/M
3300005340Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaGEnvironmentalOpen in IMG/M
3300005347Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaGHost-AssociatedOpen in IMG/M
3300005354Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaGHost-AssociatedOpen in IMG/M
3300005355Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaGHost-AssociatedOpen in IMG/M
3300005364Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaGHost-AssociatedOpen in IMG/M
3300005365Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaGEnvironmentalOpen in IMG/M
3300005440Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaGEnvironmentalOpen in IMG/M
3300005459Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2Host-AssociatedOpen in IMG/M
3300005549Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaGEnvironmentalOpen in IMG/M
3300005617Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2Host-AssociatedOpen in IMG/M
3300005618Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2Host-AssociatedOpen in IMG/M
3300005713Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)EnvironmentalOpen in IMG/M
3300005719Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2Host-AssociatedOpen in IMG/M
3300005840Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2Host-AssociatedOpen in IMG/M
3300005842Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2Host-AssociatedOpen in IMG/M
3300005844Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2Host-AssociatedOpen in IMG/M
3300006844Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2Host-AssociatedOpen in IMG/M
3300006881Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2Host-AssociatedOpen in IMG/M
3300006969Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3Host-AssociatedOpen in IMG/M
3300007004Agricultural soil microbial communities from Utah to study Nitrogen management - NC CompostEnvironmentalOpen in IMG/M
3300009094Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009100Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2Host-AssociatedOpen in IMG/M
3300009156Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009176Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaGHost-AssociatedOpen in IMG/M
3300009177Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaGHost-AssociatedOpen in IMG/M
3300010362Tropical forest soil microbial communities from Panama - MetaG Plot_22EnvironmentalOpen in IMG/M
3300010366Tropical forest soil microbial communities from Panama - MetaG Plot_24EnvironmentalOpen in IMG/M
3300010401Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1EnvironmentalOpen in IMG/M
3300010403Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3EnvironmentalOpen in IMG/M
3300011119Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaGHost-AssociatedOpen in IMG/M
3300012212Combined assembly of Hopland grassland soilHost-AssociatedOpen in IMG/M
3300012891Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S148-409B-2EnvironmentalOpen in IMG/M
3300012897Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S074-202C-1EnvironmentalOpen in IMG/M
3300012907Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S044-104R-1EnvironmentalOpen in IMG/M
3300012908Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S089-202R-1EnvironmentalOpen in IMG/M
3300012912Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S163-409C-2EnvironmentalOpen in IMG/M
3300012916Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S213-509R-2EnvironmentalOpen in IMG/M
3300012948Tropical forest soil microbial communities from Panama - MetaG Plot_14EnvironmentalOpen in IMG/M
3300012971Tropical forest soil microbial communities from Panama - MetaG Plot_1EnvironmentalOpen in IMG/M
3300013308Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaGHost-AssociatedOpen in IMG/M
3300014326Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaGHost-AssociatedOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300015373Combined assembly of cpr5 rhizosphereHost-AssociatedOpen in IMG/M
3300018053Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1EnvironmentalOpen in IMG/M
3300018076Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coexEnvironmentalOpen in IMG/M
3300018083Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1EnvironmentalOpen in IMG/M
3300018469Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 TEnvironmentalOpen in IMG/M
3300019356Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)EnvironmentalOpen in IMG/M
3300022899Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S016-104C-6EnvironmentalOpen in IMG/M
3300025535Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqA_D1 (SPAdes)EnvironmentalOpen in IMG/M
3300025903Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025908Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025917Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025920Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025926Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025930Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)EnvironmentalOpen in IMG/M
3300025931Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025938Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025940Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025941Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025961Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026023Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026095Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026118Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026121Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300027717Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Endophyte Co-N S PM (SPAdes)Host-AssociatedOpen in IMG/M
3300027886Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)EnvironmentalOpen in IMG/M
3300027907Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)Host-AssociatedOpen in IMG/M
3300028380Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300031547Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4EnvironmentalOpen in IMG/M
3300031740Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05EnvironmentalOpen in IMG/M
3300031854Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1EnvironmentalOpen in IMG/M
3300031940Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D2EnvironmentalOpen in IMG/M
3300032017Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D4EnvironmentalOpen in IMG/M
3300032122Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4EnvironmentalOpen in IMG/M
3300032157Garden soil microbial communities collected in Santa Monica, California, United States - V. faba soilEnvironmentalOpen in IMG/M
3300034147Sediment microbial communities from East River floodplain, Colorado, United States - 44_j17EnvironmentalOpen in IMG/M
3300034662Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60R4 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300034668Metatranscriptome of lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0R1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI10214J12806_1384506623300000891SoilEKKKEPFDPFADPVEELHNRAERNAKEKRFNELKTAAAELKALTTKISDEIEEGGKDVISIKLGADLDRAEKLIKTIREKAK*
Ga0055432_1019739433300004022Natural And Restored WetlandsPREELIKRAERSAKEKDFNELKEAAAELVQVSQEMSDEIERNGKEVISAKVWTNLTRAEKLLKTIRDKAK*
Ga0062593_10289100513300004114SoilAPQEKKKEPFDPFADPAEELLKRAERNEKEKRFNDLKAAAAELKTLTARMSDEIEAGGKDVISAKIWNDLDRAEKLVKTIREKAK*
Ga0062589_10232512023300004156SoilMAFVLGAMPQNEKTKEPFDPFADPAEELIKRAERSAKEKRFNELKAAASELKELSQMMSDEIEAGGKDVISVKMWTNLDRAEKLVKTMREK
Ga0063356_10021056733300004463Arabidopsis Thaliana RhizosphereMKLSVLTLLTAVVLAGAPQEKKKEPFDPFADPAEELIKRAERTQKEKRFNELKAAADELKTLSTKMSEEIEAGGQDVISAKIWADLERAEKLIKTIREKAK*
Ga0063356_10099516523300004463Arabidopsis Thaliana RhizosphereMRLLLMFFAMALVLGATPQEEKKKEPFDPFANPAEELIKRAERTATEKRFNELKAAAVELKELSQKMSDEIEAGGKDVISAKLWSNLDRAEKLVKTIREKAK*
Ga0063356_10151043623300004463Arabidopsis Thaliana RhizosphereMRLLLMFLTMAIVLGAAPQEEKKKPPFDPFADPAEELMKRAERTQKEKQFNELKAAAVELKELSQKMSDEIEAGGKDVISAKLWSNLDRAEKLVKTIREKAK*
Ga0062591_10123951313300004643SoilKRAEKSAQEKRFAELKAAAVELKELSAKMSDDIEAGGKDVLSAKMWSNLDRAEKLIKTMREKAK*
Ga0058860_1187562613300004801Host-AssociatedETFDPFADPTEELLKRAEKSVQEKRFNELKAAAAELKDLSTKMSDEIEAGGKEVVSAKIWSNLDRAEKLIKTMREKAK*
Ga0065704_1066269813300005289Switchgrass RhizosphereMKLSFLILLTTALLVGAPQEKKKEPFDPFADPAEELIKRAERNEKEKRYNDLKTAAAELKALTTRMSDEIEAGGKDVISARIWTDLDRAEKLLKTIREKAK*
Ga0065712_1022757123300005290Miscanthus RhizosphereMKLSLMILLTAALLGGGPQEKKKEPFDPLADPVEELHNRAERNEKEKRFNELKAAAGELKTLSAKISDEIEAGGKDVISARLGADLDRVDKLVKTIREKAK*
Ga0065705_1094730413300005294Switchgrass RhizosphereMALVLGAMPQNEKTKEPFDPFADPAEELIKRAERSAKEKRFNELKAAAAELKELSQMMSDEIEAGGKDVISAKMWGNLDRAEKLVKTMREKAK*
Ga0070670_10005425233300005331Switchgrass RhizosphereMRLSILFLATAIFFGGASQEEKKKETFDPFADPTQELLKRAEKSAQEKRFNDLKAAAAELKELSAKMSDEIEAGGKEVVSAKIWSNLDRAEKLIRTMRDKAK*
Ga0070670_10155689423300005331Switchgrass RhizosphereMAFVLGAMPQNEKTKEPFDPFADPAEELIKRAERSAKEKRFNELKTAAAELKELSQMMSDEIEAGGKDVISAKMWANLDRAEKLVKTMREKAK*
Ga0066388_10165629723300005332Tropical Forest SoilMRLSALFLAMAVLLGAAYPQEKKKEPFDPFADPHEELINRTERLQKEKKFNELKTAAAELKDLSQKMSDEIEAGGQDVISAKIFANLDRAEKLVKTMREKAK*
Ga0068869_10010419033300005334Miscanthus RhizosphereMRLSILFLAAAILLGGASQEEKKKETFDPFADPTEELLKRAEKSVQEKRFNELKAAAAELKDLSTKMSDEIEAGGKEVVSAKIWSNLDRAEKLIKTMREKAK*
Ga0070680_10120409013300005336Corn RhizosphereMRLLTFFLAMALVLGAMPQNEKTKEPFDPFADPAEELIKRAERSAKEKRFNELKAAAAELKELSQMMSDEIEAGGKDVISAKMWGNLDRAEKLVKTMREKAK*
Ga0068868_10121532213300005338Miscanthus RhizosphereSLAYPFQHKMDARGPMRLSILFLAAAILLGGASQEEKKKETFDPFADPTEELLKRAEKSVQEKRFNELKAAAAELKDLSTKMSDEIEAGGKEVVSAKIWSNLDRAEKLIKTMREKAK*
Ga0068868_10226103123300005338Miscanthus RhizosphereDPLADPVEELHNRAERNEKEKRFNELKAAAGELKTLSAKISDEIEAGGKDVISARLGADLDRVDKLVKTIREKAK*
Ga0070689_10011631933300005340Switchgrass RhizosphereMKLSLMILLTAAFLGGGPQEKKKEPFDPLADPVEELHNRAERNEKEKRFNELKAAAGELKTLSAKISDEIEAGGKDVISARLGADLDRVDKLVKTIREKAK*
Ga0070668_10081098213300005347Switchgrass RhizosphereMRLLTVFLAMAFVLGAMPQNEKPKEPFDPFADPAEELIKRAERSAKEKRFNELKAAAAELKELSQMMSDEIEAGGKDVISAKMWGNLDRAEKLVKTMREKAK*
Ga0070675_10016171233300005354Miscanthus RhizosphereMKLTLLTLLTAVVLAGAPQEKKKEPFDPFADPAEELVKRAERNEKEKRYNELKTAAAELKDLTTKMSDEIEAGGKDVISARIWTDLERAEKLIKTIREKAK*
Ga0070671_10001296613300005355Switchgrass RhizosphereMRLSILFLAAAILLGGASQEEKKKETFDPFADPTEELLKRAEKSVQEKRFNELKAAAAELKDLSTKMSDEIEAGGKEVVSAKIWSNLDR
Ga0070673_10125044313300005364Switchgrass RhizosphereMKLSLMILLTAALLGGGPQEKKKEPFDPLADPVEELHNRAERNEKEKRFNELKAAAGELKTLSAKISDEIEAGGKDVISARLGADLDRV
Ga0070688_10102246513300005365Switchgrass RhizosphereAEELLKRAERNEKEKRFNDLKAAAAELKTLTARMSDEIEAGGKDVISAKIWNDLDRAEKLVKTIREKAK*
Ga0070705_10096296923300005440Corn, Switchgrass And Miscanthus RhizosphereAAILLGGASQEEKKKETFDPFADPTEELLKRAEKSVQEKRFNELKAAAAELKDLSTKMSDEIEAGGKEVVSAKIWSNLDRAEKLIKTMREKAK*
Ga0068867_10133100513300005459Miscanthus RhizosphereMRLSILFLAAAILLGGASQEEKKKETFDPFADPTEELLKRAEKSVQEKRFNELKAAAAELKDLSTKMSDEIEAGGKEVVSAKIWSN
Ga0070704_10090366423300005549Corn, Switchgrass And Miscanthus RhizosphereTFDPFADPTEELMKRAEKSAQEKRFAELKVAAMELKELSAKMSDDIEAGGKDVLSARMWSNLDRAEKLIKTMREKAK*
Ga0068859_10122947313300005617Switchgrass RhizosphereMKLTVLTLLTAVVLAGAPQEKKKEPFDPFADPAEELVKRAERNEKEKRYNELKTAAAELKDLTTKMSDEIDAGGKDVISARIWTDLERAEKLIKTIREKAK*
Ga0068864_10073351323300005618Switchgrass RhizosphereMKLSLMILLTAALLGGGPQEKKKEPFDPLADPVEELHNRAERNEKEKRFNELKAAAGELKTLSAKISDEIEAGGKDVISARLGADLDRVDKLVKTIRETAK*
Ga0068864_10100510323300005618Switchgrass RhizosphereMKLSFLILTTALLAAAPQEKKKEPFDPFADPAEELLKRAERNEKEKRFNDLKAAAAELKTLTARMSDEIEAGGKDVISAKIWNDLDRAEKLVKTIREKAK*
Ga0066905_10206202423300005713Tropical Forest SoilELLKRAEKSAQEKRYNELKAAAAELKELSTKMSDEIEAGGKDVVSAKIWSNLDRAEKLVKTMREKAK*
Ga0068861_10257167013300005719Switchgrass RhizospherePTEELLKRAEKSVQEKRFNELKAAAAELKDLSTKMSDEIEAGGKEVVSAKIWSNLDRAEKLIKTMREKAK*
Ga0068870_1026201023300005840Miscanthus RhizosphereMRLLTVFLAMAFVLGAMPQNEKPKEPFDPFADPAEELIKRAERSAKEKRFNELKAAAAELKELSQMMSDEIEAGGKDVISAKMWGNLDRAEKLVK
Ga0068858_10155302123300005842Switchgrass RhizosphereLADPVEELHNRAERNEKEKRFNELKAAAGELKTLSAKISDEIEAGGKDVISARLGADLDRVDKLVKTIREKAK*
Ga0068862_10207832523300005844Switchgrass RhizospherePQNEKTKEPFDPFADPAEELIKRAERSAKEKRFNELKAAAAELKELSQMMSDEIEAGGKDVISAKMWGNLDRAEKLVKTMREKAK*
Ga0075428_10240503513300006844Populus RhizosphereMKLTLLTLLTAVVLAGAPQEKKKEPFDPFADPAEELVKRAERNEKQKRYNELKTAAAELKDLTTKMSDEIDAGGKDVISARIWTDLERAEKLIKTIREKAK*
Ga0068865_10091987113300006881Miscanthus RhizospherePFQHKIGHARTFMRLLTVFLAMAFVLGAMPQNEKPKEPFDPFADPAEELIKRAERSAKEKRFNELKAAAAELKELSQMMSDEIEAGGKDVISAKMWGNLDRAEKLVKTMREKAK*
Ga0068865_10150167113300006881Miscanthus RhizosphereHKIDARGPMRLSILFLAAAILLGGASQEEKKKETFDPFADPTEELLKRAEKSVQEKRFNELKAAAAELKDLSTKMSDEIEAGGKEVVSAKIWSNLDRAEKLIKTMREKAK*
Ga0075419_1091342723300006969Populus RhizosphereFADPTEELMKRAEKSAQERRFAELKAAAVELKELSTKMSDDIEAGGKDVLSARMWSNLDRAEKLIKTMREKAK*
Ga0079218_1013601323300007004Agricultural SoilMRLSILVLSMTVLLGGASQQDNKQQDTKKATFDPFADPAEELMKRAEKSQKEKRYGELKAAAAELKELSAKLSDELEAGDKDVISAKLWSNLDRAEKLIKTMREKAK*
Ga0111539_1003901043300009094Populus RhizosphereMRLLTVFLAMAFVLGAMPQNEKTKEPFDPFADPAEELIKRAERSAKEKRFNELKTAAAELKELSQMMSDEIEAGGKDVISAKMWANLDRAEKLVKTMREKAK*
Ga0111539_1119072213300009094Populus RhizosphereLVLGATPQDSKDKKEPFDPFANPAEELTKRAEKAAQEKKFSELKAAALELKELSQKMSDEIEAGGKDVISAKLSTNLDRAEKLVKTIREKAK*
Ga0075418_1042362523300009100Populus RhizosphereMKLTVLTLLTAVVLAGAPQEKKKEPFDPFADPAEELVKRAERTLKEKRYNELKTAAAELKDLTTKMSDEIEAGGQDVISARIWTDLERAEKLIKTIREKAK*
Ga0111538_1028097923300009156Populus RhizosphereMRLLLTFLAMALVLGATPQDSKDKKEPFDPFANPAEELTKRAEKAAQEKKFSELKAAALELKELSQKMSDEIEAGGKDVISAKLSTNLDRAEKLVKTIREKAK*
Ga0105242_1096980413300009176Miscanthus RhizosphereAEELLKRAERNEKEKRFNDLKAAATELKTLTARMSDEIDAGGKDVISAKIWNDLDRAEKLVKTIREKAK*
Ga0105248_1132103823300009177Switchgrass RhizosphereSRKRQVTLVCRKAHRSHAADAFLATAQEKKKEPFDPLADPVEELHNRAERNEKEKRFNELKAAAGELKTLSAKISDEIEAGGKDVISARLGADLDRVDKLVKTIREKAK*
Ga0126377_1122345013300010362Tropical Forest SoilKKDDKKETFDPFADPKEELVRRAERNEKEKRFNDLKNAAAELKELSRKMSDEIEAGGQDVISAKIWSDLDRAEKLVKVMREKAK*
Ga0126379_1218689413300010366Tropical Forest SoilPFANPTEELMKRAEKSAQEKRFNELKAAAAELKELSTKMSDEIESGGKEVVSAKIWSNLDRAEKLIKTMREKAK*
Ga0134121_1243322813300010401Terrestrial SoilSQEEKKKETFDSFADPTEELLKRAEKSVQEKRFNELKAAAAELKDLSTKMSDEIEAGGKEVVSAKIWSNLDRAEKLIKTMREKGETQWSQYTSLETDGSG*
Ga0134123_1332788923300010403Terrestrial SoilFANPHEELIRRTEKAAKEKKFKELNDAAAELAELSKKMSEEISSGGKEVINAKIFQNLDRAEKLVKTMREKAK*
Ga0105246_1037077823300011119Miscanthus RhizosphereMRLSILFLATAIFFGGASQEEKKKETFDPFADPTEELLKRAEKSVQEKRFNELKAAAAELKDLSTKMSDEIEAGGKEVVSAKIWSNLDRAEKLIKTMREKAK*
Ga0150985_12201454513300012212Avena Fatua RhizosphereKEPFDPLADPREELVRRTEKMAKEKKYTELKDAAAELAELSKKMSDEISAGGKEVVSIKIWENLDRAEKLVKTMREKAK*
Ga0157305_1022625913300012891SoilHKIGRARTFMRLLTFFLAMALVLGAMPQNEKTKEPFDPFADPAEELIKRAERSAKEKRFNELKAAAAELKELSQMMSDEIEAGGKDVISVKMWTNLDRAEKLVKTMREKAK*
Ga0157285_1029276913300012897SoilMRLLTVFLAMAFVLGAMPQNEKPKEPFDPFADPAEELIKRAERSAKEKRFNELKAAASELKELSQMMSDEIEAGGKDVISVKMWTNLDRAEKLVKTMREKAK*
Ga0157283_1004463313300012907SoilLMKRAEKSAQEKRFAELKAAAVELKELSAKMSDDIEAGGKDVLSARMWSNLDRAEKLIKTMREKAK*
Ga0157286_1020700423300012908SoilADPAEELIKRAERSAKEKRFNELKAAAAELKELSQMMSDEIEAGGKDVISAKMWANLDRAEKLVKTMREKAK*
Ga0157306_1007286923300012912SoilMRLLTVFLAMAFVLGAMPQNEKTKEPFDPFADPAEELIKRAERSAKEKRFNELKTAAAELKELSQMMSDEIEAGGKDVISVKMWTNLDRAEKLVKTMREKAK*
Ga0157310_1036546213300012916SoilMRLLTVFLAMAFVLGAMPQNEKPKEPFDPFADPAEELIKRAERSAKEKRFNELKTAAAELKELSQMMSDEIEAGGKDVISAKMWANLDRAEKLVKTMREKAK*
Ga0126375_1187702113300012948Tropical Forest SoilMRLSILFLAMAVLLGAMPQEEKKKEPFDPFANPTEELMKRAEKSAQEKRFNELKAAAAELKELSGKMSDEIDSGGKDVVSAKIWSNLDRAEKLIK
Ga0126369_1026951023300012971Tropical Forest SoilMKLSLMVLAMAVVLGAAPQDKKKEPIDPLADPVVELANRAERAEKEKKFEQVKAAAVELKTLSAKISDDFEAGGKDVISAKIWGDLDRAEKLIKTIREKAK*
Ga0157375_1156108223300013308Miscanthus RhizosphereAMPQNEKTKEPFDPFADPAEELIKRAERSAKEKRFNELKAAAAELKELSQMMSDEIEAGGKDVISAKMWGNLDRAEKLVKTMREKAK*
Ga0157380_10004456103300014326Switchgrass RhizosphereMRLLTFFLAMALVLGAMPQNEKTKEPFDPFADPAEELIKRAERSAKEKRFNELKAAAAELKELSQMMSDEIEAGGKDVISAKMWGNLDRAEKLVKAMREKVK*
Ga0132258_1110413433300015371Arabidopsis RhizosphereMKLSFLILTTALLAAAPQEKKKEPFDPFADPAEELLKRAERNEKEKRFNDLKAAATELKTLTARMSDEIEAGGKDVISAKIWNDLDRAEKLVKTIREKAK*
Ga0132257_10197668213300015373Arabidopsis RhizosphereKKEPFDPFADPTEELMKRAEKSAQEKRFNELKAAAVELKELTTKMSDEIEAGGKDVVSAKMWSNLDRAEKLIKTIRDKAK*
Ga0132257_10200319013300015373Arabidopsis RhizosphereDPFADPAEELLKRAERNEKEKRFNDLKAAATELKTLTARMSDEIEAGGKDVISAKIWNDLDRAEKLVKTIREKAK*
Ga0132257_10235894023300015373Arabidopsis RhizosphereMRLSILFLAAAILLGGASQEEKKKETFDPFADPTEELLKRAEKSVQERRFNELKAAAAELKDLSTKMSDEIEAGGKEVVSAKIW
Ga0184626_1009828623300018053Groundwater SedimentMRLSLLILTMAVFLGAALQDDKKKETFDPFADPKEEMIKRAERTEKEKRYNDLKAAAAELKLLSQKMSDDVETGGKDVISARLWNNLDRAEKLVKIMREKAK
Ga0184609_1028282723300018076Groundwater SedimentKEEMIKRAERTEKEKRYNDLKAAAAELKQLSLKMSDDVEAGGKDVISARLWTNLDRADKLVKIMREKAK
Ga0184628_1057928223300018083Groundwater SedimentFDPLADPREELVRRTAKLAKEKKYNELKDAAAELADLSKKMSDEISAGGKEVISIKIWENLDRAEKLVKTMREKAK
Ga0190270_1146033313300018469SoilMRLLTVFLAMALVLGAIPQNEKTKEPFDPFADPAEELIKRAERSAKEKRFNELKAAAAELKELSQMMSDEIEAGGKDVISAK
Ga0173481_1075933213300019356SoilHARTFMRLLTVFLAMAFVLGAMPQNEKPKEPFDPFADPAEELIKRAERSAKEKRFNELKAAAAELKELSQMMSDEIEAGGKDVISVKMWTNLDRAEKLVKTMREKAK
Ga0247795_110212513300022899SoilTEELMKRAEKSAQEKRFAELKAAAVELKELSAKMSDDIEAGGKDVLSAKMWSNLDRAEKLIKTMREKAK
Ga0207423_108355713300025535Natural And Restored WetlandsPREELIKRAERSAKEKDFNELKEAAAELVQVSQEMSDEIERNGKEVISAKVWTNLTRAEKLLKTIRDKAK
Ga0207680_1007943323300025903Switchgrass RhizosphereMRLSILFLAAAILLGGASQEEKKKETFDPFADPTEELLKRAEKSVQEKRFNELKAAAAELKDLSTKMSDEIEAGGKEVVSAKIWSNLDRAEKLIKTMREKAK
Ga0207680_1063857913300025903Switchgrass RhizosphereLSLMILLTAALLGGGPQEKKKEPFDPLADPVEELHNRAERNEKEKRFNELKAAAGELKTLSAKISDEIEAGGKDVISARLGADLDRVDKLVKTIREKAK
Ga0207643_1023955023300025908Miscanthus RhizosphereMRLSILFLATAIFFGGASQEEKKKETFDPFADPTQELLKRAEKSAQEKRFNDLKAAAAELKELSAKMSDEIEAGGKEVVSAKIWSNLDRAEKLIRTMRDKAK
Ga0207643_1051598923300025908Miscanthus RhizosphereMRLLTVFLAMAFVLGAMPQNEKPKEPFDPFADPAEELIKRAERSAKEKRFNELKAAAAELKELSQMMSDEIEAGGKDVISAKMWGNLDRAEKLVKT
Ga0207660_1096727523300025917Corn RhizosphereMRLLTFFLAMALVLGAMPQNEKTKEPFDPFADPAEELIKRAERSAKEKRFNELKAAAAELKELSQMMSDEIEAGGKDVISAKMWGNLDRAEKLVKTMREKAK
Ga0207649_1079668113300025920Corn RhizosphereLAAAILLGGASQEEKKKETFDPFADPTEELLKRAEKSVQEKRFNELKAAAAELKDLSTKMSDEIEAGGKEVVSAKIWSNLDRAEKLIKTMREKAK
Ga0207659_1116316323300025926Miscanthus RhizosphereMRLLTVFLAMAFVLGAMPQNEKPKEPFDPFADPAEELIKRAERSAKEKRFNELKAAAAELKELSQMMSDEIEAGGKDVISAKMWGNLDRAEKLVKTMREKAK
Ga0207701_1038751733300025930Corn, Switchgrass And Miscanthus RhizosphereMPQNEKTKEPFDPFADPAEELIKRAERSAKEKRFNELKAAAAELKELSQMMSDEIEAGGKDVISAKMWGNLDRAEKLVKTMREKAK
Ga0207644_1000930113300025931Switchgrass RhizosphereMRLSILFLAAAILLGGASQEEKKKETFDPFADPTEELLKRAEKSVQEKRFNELKAAAAELKDLSTKMSDEIEAGGKEVVSAKIWSNLDRA
Ga0207704_1186859513300025938Miscanthus RhizosphereLAYPFQHKIDARGPMRLSILFLAAAILLGGASQEEKKKETFDPFADPTEELLKRAEKSVQEKRFNELKAAAAELKDLSTKMSDEIEAGGKEVVSAKIWSNLDRAEKLIKTMREKAK
Ga0207691_1154604213300025940Miscanthus RhizosphereAELMKRAEKSAQEKRFAELKAAAVELKELSAKMSDDIEAGGKDVLSAKMWSNLDRAEKLIKTMREKAK
Ga0207711_1108931913300025941Switchgrass RhizosphereQEKKKEPFDPLADPVEELHNRAERNEKEKRFNELKAAAGELKTLSAKISDEIEAGGKDVISARLGADLDRVDKLVKTIREKAK
Ga0207712_1108166023300025961Switchgrass RhizosphereMRLSILFLAAAILLGGASQEEKKKETFDPFADPTEELLKRAEKSVQEKRFNELKAAAAELKDLSTKMSDEIEAGGKEVVSAKIWSNL
Ga0207677_1175116713300026023Miscanthus RhizosphereLLGGGPQEKKKEPFDPLADPVEELHNRAERNEKEKRFNELKAAAGELKTLSAKISDEIEAGGKDVISARLGADLDRVDKLVKTIREKAK
Ga0207676_1086654213300026095Switchgrass RhizosphereMKLSFLILTTALLAAAPQEKKKEPFDPFADPAEELLKRAERNEKEKRFNDLKAAAAELKTLTARMSDEIEAGGKDVISAKIWNDLDRAEKLVKTIREKAK
Ga0207676_1115833723300026095Switchgrass RhizosphereMKLSLMILLTAALLGGGPQEKKKEPFDPLADPVEELHNRAERNEKEKRFNELKAAAGELKTLSAKISDEIEAGGKDVISARLGADLDRVDKLVKTIREKAK
Ga0207675_10214997313300026118Switchgrass RhizosphereKKETFDPFADPTEELLKRAEKSVQEKRFNELKAAAAELKDLSTKMSDEIEAGGKEVVSAKIWSNLDRAEKLIKTMREKAK
Ga0207683_1164397623300026121Miscanthus RhizosphereADPAEELIKRAERSAKEKRFNELKAAAAELKELSQMMSDEIEAGGKDVISAKMWGNLDRAEKLVKTMREKAK
Ga0209998_1012550923300027717Arabidopsis Thaliana RhizosphereMRLLTVFLAMAFVLGAMPQNEKTKEPFDPFADPAEELIKRAERSAKEKRFNELKTAAAELKELSQMMSDEIEAGGKDVISAKMWANLDRAEKLVKTMREKAK
Ga0209486_1010208623300027886Agricultural SoilMRLSILVLSMTVLLGGASQQDNKQQDTKKATFDPFADPAEELMKRAEKSQKEKRYGELKAAAAELKELSAKLSDELEAGDKDVISAKLWSNLDRAEKLIKTMREKAK
Ga0207428_1041065223300027907Populus RhizosphereMKLTLLTLLTAVVLAGAPQEKKKEPFDPFADPAEELVKRAERNEKEKRYNELKTAAAELKDLTTKMSDEIDAGGKDVISARIWTDLERAEKLIKTIREKAK
Ga0268265_1176133213300028380Switchgrass RhizosphereTLLTLLTAVVLAGAPQEKKKEPFDPFADPAEELVKRAERNEKEKRYNELKTAAAELKDLTTKMSDEIEAGGKDVISARIWTDLERAEKLIKTIREKAK
Ga0310887_1009868033300031547SoilQNEKPKEPFDPFADPAEELIKRAERSAKEKRFNELKAAAAELKELSQMMSDEIEAGGKDVISAKMWTNLDRAEKLVKTMREKAK
Ga0307468_10240588223300031740Hardwood Forest SoilPAEELLKRAERTEKEKRFNELKAAAAELKELSQKMSDEIEAGGKDVISAKIFTNLDRAEKLVKTMREKAK
Ga0310904_1018379023300031854SoilMRLLTVFLAMAFVLGAMPQNEKTKEPFDPFADPAEELIKRAERSAKEKRFNELKAAAAELKELSQMMSDEIEAGGKDVISAKMWGNLDRAEKLVKTMREKAK
Ga0310904_1133032423300031854SoilMKLSLMILLTAAVLGGAPQEKKKEPFDPFADPVEELHNRAERSAKEKRFSELQTAAAELKMLTARISDEIDAGGKDVISAKLGTDLDRAEKLVKTI
Ga0310901_1053058823300031940SoilLGAMPQNEKTKEPFDPFADPAEELIKRAERSAKEKRFNELKAAAAELKELSQMMSDEIEAGGKDVISAKMWTNLDRAEKLVKTMREKAK
Ga0310899_1015167223300032017SoilMRLLTFFLAMALVLGAMPQNEKTKEPFDPFADPAEELIKRAERSAKEKRFNELKAAAAELKELSQMMSDEIEAGGKDVISAKMWTNLDRAEKLVKTMREKAK
Ga0310895_1006285113300032122SoilMRLLTFFLAMALVLGAMPQNEKTKEPFDPFADPAEELIKRAERSAKEKRFNELKAAAAELKELSQMMSDEIEAGGKDVISAKMWGNLDRAEK
Ga0315912_1004410233300032157SoilMRVSLLLLAFTVLLAGAPQDDKKDKEPFDPFADPREELIRRTEKAAKEKKYNELKDAAAELADLSQKMSDEITAGGKEVISARVWTSLDRAEKLVKTMREKAK
Ga0364925_0068037_150_4583300034147SedimentMRVPLLLLAFTLLVAGAPQEEKKKEPFDPLADPREELVRRTAKLAKEKKYNELKDAAAELADLSKKMSDEISAGGKEVISIKIWENLDRAEKLVKTMREKAK
Ga0314783_045622_598_8073300034662SoilAEELIKRAERSAKEKRFNELKAAAAELKELSQMMSDEIEAGGKDVISAKMWGNLDRAEKLVKTMREKAK
Ga0314793_042951_515_8023300034668SoilLILTTALLVAAPQEKKKEPFDPFADPAEELLKRAERNEKEKRFNDLKAAAAELKTLTARMSDEIEAGGKDVISAKIWNDLDRAEKLVKTIREKAK
Ga0314793_051683_507_7553300034668SoilEKPKEPFDPFADPAEELIKRAERSAKEKRFNELKAAAAELKELSQMMSDEIEAGGKDVISAKMWGNLDRAEKLVKTMREKAK

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.