Metagenome / Metatranscriptome Family F090108

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F090108
Family Type	Metagenome / Metatranscriptome
Number of Sequences	108
Average Sequence Length	48 residues
Representative Sequence	LGVLGPNYEDLLDRLKVVAGNLFRARGETVTDIKIIPSERPALQVFH
Number of Associated Samples	81
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	9.26 %
% of genes near scaffold ends (potentially truncated)	92.59 %
% of genes from short scaffolds (< 2000 bps)	96.30 %
Associated GOLD sequencing projects	76
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.62

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (62.037 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (33.333 % of family members)
Environment Ontology (ENVO)	Unclassified (51.852 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (58.333 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 24.00% β-sheet: 13.33% Coil/Unstructured: 62.67%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.62
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.62
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF09926	DUF2158	42.59
PF00982	Glyco_transf_20	2.78
PF00326	Peptidase_S9	1.85
PF07676	PD40	1.85
PF04184	ST7	0.93
PF13414	TPR_11	0.93
PF13614	AAA_31	0.93
PF13340	DUF4096	0.93
PF00239	Resolvase	0.93
PF06904	Extensin-like_C	0.93
PF02371	Transposase_20	0.93
PF01734	Patatin	0.93
PF13439	Glyco_transf_4	0.93
PF00589	Phage_integrase	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG0380	Trehalose-6-phosphate synthase, GT20 family	Carbohydrate transport and metabolism [G]	2.78
COG1752	Predicted acylesterase/phospholipase RssA, containd patatin domain	General function prediction only [R]	0.93
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.93
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	0.93
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.93
COG3621	Patatin-like phospholipase/acyl hydrolase, includes sporulation protein CotR	General function prediction only [R]	0.93
COG3921	Uncharacterized conserved protein, contains Extensin-like_C domain	Function unknown [S]	0.93
COG4667	Predicted phospholipase, patatin/cPLA2 family	Lipid transport and metabolism [I]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	62.04 %
Unclassified	root	N/A	37.96 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	62.04 %
Unclassified	root	N/A	37.96 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	62.04 %
Unclassified	root	N/A	37.96 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	56.48 %
Unclassified	root	N/A	37.96 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	50.93 %
Unclassified	root	N/A	37.96 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	43.52 %
Unclassified	root	N/A	37.96 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	1.85 %
Enterobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales	0.93 %

Name	Rank	Taxonomy	Distribution
Beijerinckiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	38.89 %
Unclassified	root	N/A	37.96 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2.78 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.85 %
Enterobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae	0.93 %

Name	Rank	Taxonomy	Distribution
unclassified Beijerinckiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae	38.89 %
Unclassified	root	N/A	37.96 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2.78 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.85 %
Escherichia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia	0.93 %

Name	Rank	Taxonomy	Distribution
Beijerinckiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	38.89 %
Unclassified	root	N/A	37.96 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2.78 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.85 %
Escherichia coli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia → Escherichia coli	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459013\|GO6OHWN02FY64D	Not Available	540	Open in IMG/M
3300000580\|AF_2010_repII_A01DRAFT_1044431	Not Available	685	Open in IMG/M
3300001641\|JGI20238J16299_101370	Not Available	739	Open in IMG/M
3300005332\|Ga0066388_101975899	Not Available	1044	Open in IMG/M
3300005598\|Ga0066706_10703485	All Organisms → cellular organisms → Bacteria	803	Open in IMG/M
3300005764\|Ga0066903_103649137	Not Available	828	Open in IMG/M
3300005764\|Ga0066903_103756607	Not Available	816	Open in IMG/M
3300005764\|Ga0066903_104234108	All Organisms → cellular organisms → Bacteria → Proteobacteria	767	Open in IMG/M
3300005764\|Ga0066903_105359861	All Organisms → cellular organisms → Bacteria	677	Open in IMG/M
3300005764\|Ga0066903_109002313	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	505	Open in IMG/M
3300006028\|Ga0070717_11264608	Not Available	671	Open in IMG/M
3300006052\|Ga0075029_101118493	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	548	Open in IMG/M
3300006057\|Ga0075026_100598105	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	648	Open in IMG/M
3300006086\|Ga0075019_10344708	Not Available	904	Open in IMG/M
3300006800\|Ga0066660_11037368	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	656	Open in IMG/M
3300009792\|Ga0126374_10810696	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	716	Open in IMG/M
3300010358\|Ga0126370_10351498	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1191	Open in IMG/M
3300010359\|Ga0126376_10733582	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	955	Open in IMG/M
3300010359\|Ga0126376_11496065	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	704	Open in IMG/M
3300010361\|Ga0126378_10286041	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1749	Open in IMG/M
3300010361\|Ga0126378_10406181	All Organisms → cellular organisms → Bacteria → Proteobacteria	1475	Open in IMG/M
3300010398\|Ga0126383_12005475	Not Available	666	Open in IMG/M
3300012200\|Ga0137382_10516799	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	849	Open in IMG/M
3300012206\|Ga0137380_10305717	All Organisms → cellular organisms → Bacteria → Proteobacteria	1424	Open in IMG/M
3300012210\|Ga0137378_10124082	All Organisms → cellular organisms → Bacteria → Proteobacteria	2384	Open in IMG/M
3300012351\|Ga0137386_10138448	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1737	Open in IMG/M
3300012356\|Ga0137371_11026827	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	624	Open in IMG/M
3300012359\|Ga0137385_10116075	All Organisms → cellular organisms → Bacteria → Proteobacteria	2366	Open in IMG/M
3300012960\|Ga0164301_11395440	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	572	Open in IMG/M
3300012961\|Ga0164302_10116640	All Organisms → cellular organisms → Bacteria	1510	Open in IMG/M
3300016270\|Ga0182036_10613237	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	874	Open in IMG/M
3300016270\|Ga0182036_11914656	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	503	Open in IMG/M
3300016294\|Ga0182041_10120471	Not Available	1969	Open in IMG/M
3300016294\|Ga0182041_10435592	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	1123	Open in IMG/M
3300016294\|Ga0182041_10873234	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	807	Open in IMG/M
3300016294\|Ga0182041_11362897	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	650	Open in IMG/M
3300016319\|Ga0182033_10393995	Not Available	1169	Open in IMG/M
3300016319\|Ga0182033_11620710	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	585	Open in IMG/M
3300016341\|Ga0182035_10354017	Not Available	1221	Open in IMG/M
3300016341\|Ga0182035_10644582	Not Available	919	Open in IMG/M
3300016357\|Ga0182032_10993390	Not Available	717	Open in IMG/M
3300016357\|Ga0182032_11118141	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	676	Open in IMG/M
3300016371\|Ga0182034_10405501	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	1119	Open in IMG/M
3300016404\|Ga0182037_11025444	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	720	Open in IMG/M
3300016422\|Ga0182039_10415312	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	1145	Open in IMG/M
3300017933\|Ga0187801_10046492	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1567	Open in IMG/M
3300017973\|Ga0187780_10873604	Not Available	652	Open in IMG/M
3300017995\|Ga0187816_10100491	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1241	Open in IMG/M
3300017995\|Ga0187816_10197204	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	875	Open in IMG/M
3300020581\|Ga0210399_10526509	Not Available	981	Open in IMG/M
3300021088\|Ga0210404_10377731	Not Available	790	Open in IMG/M
3300021178\|Ga0210408_10103918	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia → Escherichia coli	2234	Open in IMG/M
3300021178\|Ga0210408_10133706	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	1959	Open in IMG/M
3300021178\|Ga0210408_10896370	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	690	Open in IMG/M
3300021405\|Ga0210387_10860642	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	799	Open in IMG/M
3300021475\|Ga0210392_10435973	Not Available	959	Open in IMG/M
3300021478\|Ga0210402_10758002	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	895	Open in IMG/M
3300022532\|Ga0242655_10312760	Not Available	514	Open in IMG/M
3300022714\|Ga0242671_1104669	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	542	Open in IMG/M
3300026959\|Ga0207852_1025835	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	604	Open in IMG/M
3300027680\|Ga0207826_1177253	Not Available	579	Open in IMG/M
3300031128\|Ga0170823_15921720	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2094	Open in IMG/M
3300031231\|Ga0170824_108974667	All Organisms → cellular organisms → Bacteria	617	Open in IMG/M
3300031231\|Ga0170824_117373054	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	988	Open in IMG/M
3300031231\|Ga0170824_123717469	All Organisms → cellular organisms → Bacteria	1052	Open in IMG/M
3300031543\|Ga0318516_10852367	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	514	Open in IMG/M
3300031544\|Ga0318534_10310413	Not Available	909	Open in IMG/M
3300031546\|Ga0318538_10454084	Not Available	694	Open in IMG/M
3300031561\|Ga0318528_10106405	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1475	Open in IMG/M
3300031573\|Ga0310915_11220221	Not Available	520	Open in IMG/M
3300031682\|Ga0318560_10500147	Not Available	659	Open in IMG/M
3300031718\|Ga0307474_10805469	Not Available	743	Open in IMG/M
3300031719\|Ga0306917_10133631	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1823	Open in IMG/M
3300031719\|Ga0306917_11056023	Not Available	633	Open in IMG/M
3300031748\|Ga0318492_10572259	Not Available	602	Open in IMG/M
3300031751\|Ga0318494_10696302	Not Available	595	Open in IMG/M
3300031771\|Ga0318546_11071024	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	567	Open in IMG/M
3300031780\|Ga0318508_1036456	Not Available	1266	Open in IMG/M
3300031780\|Ga0318508_1081068	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	888	Open in IMG/M
3300031796\|Ga0318576_10484247	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	584	Open in IMG/M
3300031797\|Ga0318550_10642884	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	509	Open in IMG/M
3300031821\|Ga0318567_10622674	Not Available	613	Open in IMG/M
3300031832\|Ga0318499_10382398	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	540	Open in IMG/M
3300031845\|Ga0318511_10553014	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	535	Open in IMG/M
3300031890\|Ga0306925_10813853	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	968	Open in IMG/M
3300031890\|Ga0306925_11882200	Not Available	569	Open in IMG/M
3300031890\|Ga0306925_12159724	Not Available	519	Open in IMG/M
3300031910\|Ga0306923_10273155	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	1933	Open in IMG/M
3300031910\|Ga0306923_11394357	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	738	Open in IMG/M
3300031912\|Ga0306921_11252215	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	823	Open in IMG/M
3300031912\|Ga0306921_12255763	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	572	Open in IMG/M
3300031941\|Ga0310912_10655438	Not Available	815	Open in IMG/M
3300031942\|Ga0310916_10410073	All Organisms → cellular organisms → Bacteria	1153	Open in IMG/M
3300031945\|Ga0310913_10263660	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	1212	Open in IMG/M
3300031954\|Ga0306926_10363248	Not Available	1789	Open in IMG/M
3300031959\|Ga0318530_10256098	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	721	Open in IMG/M
3300032025\|Ga0318507_10465406	Not Available	550	Open in IMG/M
3300032035\|Ga0310911_10097703	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	1607	Open in IMG/M
3300032059\|Ga0318533_11166035	Not Available	564	Open in IMG/M
3300032064\|Ga0318510_10377937	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	601	Open in IMG/M
3300032076\|Ga0306924_12504986	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	517	Open in IMG/M
3300032180\|Ga0307471_101235618	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	911	Open in IMG/M
3300032261\|Ga0306920_101131100	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	1134	Open in IMG/M
3300032261\|Ga0306920_101705712	Not Available	892	Open in IMG/M
3300032261\|Ga0306920_102477674	Not Available	714	Open in IMG/M
3300032261\|Ga0306920_103491566	Not Available	581	Open in IMG/M
3300033289\|Ga0310914_10297328	Not Available	1456	Open in IMG/M
3300033290\|Ga0318519_10962092	Not Available	529	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	94.44%
Aquatic	Environmental → Aquatic	5.56%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	94.44%
Freshwater	Environmental → Aquatic → Freshwater	2.78%
Sediment	Environmental → Aquatic → Sediment	2.78%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	84.26%
Loam	Environmental → Terrestrial → Soil → Loam	9.26%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.78%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.78%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.93%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	67.59%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	13.89%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.33%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.78%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.78%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.78%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	33.33%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	27.78%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	7.41%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.48%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.56%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	4.63%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.78%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.85%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.85%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.93%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.93%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459013	Grass soil microbial communities from Rothamsted Park, UK - July 2010 direct MP BIO 1O1 lysis soil at the rocks surface 0-21cm	Environmental	Open in IMG/M
3300000580	Forest soil microbial communities from Amazon forest - 2010 replicate II A01	Environmental	Open in IMG/M
3300001641	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF004	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300022532	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022714	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300026959	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 3 (SPAdes)	Environmental	Open in IMG/M
3300027680	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 80 (SPAdes)	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031780	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
N57_06352380	2170459013	Grass Soil	YEDLLDRLKVIAGNLFRARGETVTDIKIIPSEKPALQVFH
AF_2010_repII_A01DRAFT_10444312	3300000580	Forest Soil	PNFEDLLDRLKVLAGNLFRARGETVADVEIVRSEKPALHVFH*
JGI20238J16299_1013702	3300001641	Forest Soil	NYEDLLDRLKAVAGNLFRARGETVTDIKIIPSERPALQVFH*
Ga0066388_1019758992	3300005332	Tropical Forest Soil	WWFIFVDEVGLGVLGPNFEDLLDRLKVLAGNLFRARGETVADVEIVRSEKPALHVFH*
Ga0066706_107034854	3300005598	Soil	VLGPNYEALLDRLKVVAADLFRARGEPVTDIEIIASEKPALQVFH*
Ga0066903_1036491373	3300005764	Tropical Forest Soil	VGPKYEDLLDRIKVLAGDLFRARGETVTDIKIIPSKKPAIQVFH*
Ga0066903_1037566071	3300005764	Tropical Forest Soil	EDLLDRLKVLAGNLFRARGETVTDLEIVRSEKPALHVFH*
Ga0066903_1042341083	3300005764	Tropical Forest Soil	LGPNYEDSLNRLKVVAGNLFRARGETVTDIKIIPSERPALQVLH*
Ga0066903_1053598613	3300005764	Tropical Forest Soil	PGLGVLGPNYEDLLDRLKVMAENVFRTRGETVTDIKIIPSERPALQVLH*
Ga0066903_1090023131	3300005764	Tropical Forest Soil	WFIFVDEVPGLGVVGPNFEDLLGRLKVLAGNLFRARGEPVAEIEIVRSENPALHVFF*
Ga0070717_112646082	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	EDLLDRLKVVAGNVFRARGETVTDIKIIPSEKPALQVLH*
Ga0075029_1011184932	3300006052	Watersheds	DEVPGLGVLGPNYEDLLDRLKAVAGNLFRARGETVTDIKIIPSERPALQVFH*
Ga0075026_1005981052	3300006057	Watersheds	VLGPNYEDLLDRLKVVARNVFRARGETVTDIKIIPSEKPALQVLH*
Ga0075019_103447082	3300006086	Watersheds	NFEDLLDRLKVLAGNLFRARGETVADIEIVRSEKPALHVFH*
Ga0066660_110373681	3300006800	Soil	VDEVGLGVLGPNFEDLLDRLKVLAGNLFRARGEPVADIEIVRSEKPALHVFH*
Ga0126374_108106963	3300009792	Tropical Forest Soil	FVDEVPGLGVLGPNYEDLLDRLKVVAGNVFRARGETVRDIKIIPSERPALQVLH*
Ga0126370_103514981	3300010358	Tropical Forest Soil	DLLDRLKVVAGNVFRARGETVTDIKIIPSESPALQVLH*
Ga0126376_107335821	3300010359	Tropical Forest Soil	MVVHLRGRVGLGVLGPNFEDLLDRLKVLAGNLFRARGETVTDLEIVRSEKPALHVFH*
Ga0126376_114960652	3300010359	Tropical Forest Soil	VLGPNYEDLLDRLKVVAGNVFRARGETVTDIKIIPSEKPALQVLH*
Ga0126378_102860411	3300010361	Tropical Forest Soil	VLGPNYEDLLDRLKVVAGNVFRARGESVTDIKIIPSERPALQVLH*
Ga0126378_104061813	3300010361	Tropical Forest Soil	PGLGVLGPNYEDLLDRLKVVAGNVFRARGETVTDIKIIPAETPALQVLH*
Ga0126383_120054751	3300010398	Tropical Forest Soil	VLGPNFEDLLDRLKVLAGNLFRARGETVADLEIVRSEKPALHVFH*
Ga0137382_105167992	3300012200	Vadose Zone Soil	VDEVPGLGVLGPNYEDLLDRLKVVAGNVFRARGETVTDIKIIPSERPALQVFH*
Ga0137380_103057174	3300012206	Vadose Zone Soil	WFSFVDEVPGLGVLGPNYEDLLERLKVVAGNLFRAHGETVTDIEIVRSEKPALHVFH*
Ga0137378_101240824	3300012210	Vadose Zone Soil	YEALLDRLKVVAGDLFRARGETVTDIEIIASEKPALHVFH*
Ga0137386_101384483	3300012351	Vadose Zone Soil	ALLDRLKVVAADLFRMRGETVTDTEIIASEKPALQVFH*
Ga0137371_110268272	3300012356	Vadose Zone Soil	IFVDEVPGLGVLGPNYEALLDRLKVVAGDLFRARGETVTDIEIIASEKPALQVFH*
Ga0137385_101160751	3300012359	Vadose Zone Soil	WWFIFVDEVPGLGVLGPNYEALLDRLKVVAGDLFRARGETVTDIEIIASEKPALHVFH*
Ga0164301_113954401	3300012960	Soil	FIDEVPGRGVVGQNYEDLLDRLKDIAGNLFRARGETVTDIKIIPSEKPALQVFH*
Ga0164302_101166401	3300012961	Soil	EVPGLGVFGPNYENLLDRLKVVAGNLFRARGETVTEVEITPSEKAALHVLH*
Ga0182036_106132372	3300016270	Soil	DGWWFIFVDEVPGLGVLGPNYEDLLDRLKVVAGNVFRARGESVTDIKIIPSERPALQVLH
Ga0182036_119146561	3300016270	Soil	VGLGVLGPNFEDLLDRLKVLAGNLFRARGETVTDLEIVRSEKPALHVFH
Ga0182041_101204711	3300016294	Soil	WWFIFVDEVPGLGVLGPNYEDLLDRLKVVAGNVFRARGESVTDIKIIPSERPALQVLH
Ga0182041_104355921	3300016294	Soil	EVPGLGVLGPNYEDLLDRLKVVTGNLFRARGENVTDIKIIPSERPALQVFH
Ga0182041_108732342	3300016294	Soil	PGLGVLGPNYEDLLDRLKVVAGNVFRARGETVTDIKIIPSERPALQVLH
Ga0182041_113628972	3300016294	Soil	DEVPGLGVLGPNYEDLLDRLKVVAGNLFRARGETVTEIKIIPSERPALQVFH
Ga0182033_103939953	3300016319	Soil	GVLGPNYEVLLDRLKVVAGNVFRARGESVTDIKIIPSERPALQVLH
Ga0182033_116207103	3300016319	Soil	GVLGPNFEDLLDRLKVLAGNLFRARGETVADIEIVRSEKPALHVFH
Ga0182035_103540173	3300016341	Soil	VGPNFEDLLGRLKVLAGNLFRARGGPVAEIEIVRSENPALHVFF
Ga0182035_106445823	3300016341	Soil	GVLGPNYEDLLDRLKVVAGNVFRARGESVTDIKIIPSERPALQVLH
Ga0182032_109933901	3300016357	Soil	EVPGLGVVGPNFEDLLGRLKVLAGNLFRARGEPVAEIEIVRSENPALHVFY
Ga0182032_111181411	3300016357	Soil	LDGWWFIFVDEVPGLGVLGPNYEDLLDRLKLVARNVFRARGDTVTDIKIIPSDRPALQVF
Ga0182034_104055014	3300016371	Soil	FIFVDEVPGLGVLGPNYEDLLDRLKVVAGNLFRARGETVTEIKIIPSERPALQVFH
Ga0182037_110254443	3300016404	Soil	GVLGPNYEDLLDRLKVVAGNVFRARGEAVTDVKIIPSERPALQVFH
Ga0182039_104153121	3300016422	Soil	WWFIFVDEVPGLGVLGPNYEDLLDRLKVVAGNVFRARGETVTEIKIIPSERPALQDFH
Ga0187801_100464923	3300017933	Freshwater Sediment	FGPNYEDLLDRLKVVAGNLFRARGETVNDIEIIAAAEKPALQVLH
Ga0187780_108736041	3300017973	Tropical Peatland	LGVLGPNYEALLERLRTDAQSLFRSRGETVTDIEVVRSEKPALQVFH
Ga0187816_101004911	3300017995	Freshwater Sediment	LGVFGPNYENLLDRLKVVAGNLFRARGETVTDIEIIQSEKPALHVFH
Ga0187816_101972042	3300017995	Freshwater Sediment	VDEVPGLGVLGPNYEDLIDRLKLVAGNVFRARGETVTDIKIIPSERPALQVLH
Ga0210399_105265092	3300020581	Soil	FIFIDEVPGLGVVGQNYEDLLDRLKVIAGNLFRARGETVTDIKIIPSEKPALQVFH
Ga0210404_103777312	3300021088	Soil	LDGWWFIFIDEVPGLGVVGQNYEDLLDRLKVIAGNLFRARGETVTDIKIIPSEKPALQVF
Ga0210408_101039181	3300021178	Soil	DGWWFIFIDEVPGLGVVGQNYEDLLDRLKVIAANLFRARGETVTDIKIIPSEKPALQVFH
Ga0210408_101337064	3300021178	Soil	VGPNYEDLLDRLKVTAGNLFRARGETVTDVRIVPTEKPALQVFH
Ga0210408_108963703	3300021178	Soil	GWWFIFIDEVPGLGVVGQNYEDLLDRLKVIAGNLFRARGETVTDIKIIPSEKPALQVFH
Ga0210387_108606421	3300021405	Soil	VDEVPGLGVWGLNYEDLLDRLKAAAGKLFRARGETVTDIKIIPSERPALQVFH
Ga0210392_104359731	3300021475	Soil	FIDEVPGLGVVGQNYEDLLDRLKVIAGNLFRARGETVTDIKIIPSEKPGLQVFH
Ga0210402_107580021	3300021478	Soil	GLGVWGRNYEDLLDRLKAAAGNLFRARGETVTDIKIIPSERPALQVFH
Ga0242655_103127602	3300022532	Soil	YEDLLDRLKVIAGNLFRARGETVTDIKIIPSEKPGLQVFH
Ga0242671_11046692	3300022714	Soil	MVVHFHRVPGLGVVGQNYEDLLDRLKVIAGNLFRARGETVTDIKIIPSEKPALQVFH
Ga0207852_10258351	3300026959	Tropical Forest Soil	DGWWFIFVDEVPGLGVLGPDYEVSLERLKAVAENLFRERGETVVDIEIVRSDEPALHVFH
Ga0207826_11772533	3300027680	Tropical Forest Soil	FEDLLDRLKVLAGNLFRARGETVADIEIVRSEKPALHVFH
Ga0170823_159217204	3300031128	Forest Soil	EVPGLGVLGPNYEDLLDRLKVLARNVFRARGETVTDIKIIPSEKPALQVLH
Ga0170824_1089746672	3300031231	Forest Soil	FEDLLDRLKILAGNLFRARGETVADVEIVRSEKPALHVFH
Ga0170824_1173730541	3300031231	Forest Soil	VVGPNYEDLIDRLKVMAGNLFRARGETVTDIKIIPSEKPALQVFH
Ga0170824_1237174691	3300031231	Forest Soil	LLDRLKVVAADLFRARGETVTDIEIIASEKPALQVLH
Ga0318516_108523671	3300031543	Soil	DDVPGLGVLGPNYEDLLDRLKVVAGNVFRARGETVTDIKIIPSERPTLQVLH
Ga0318534_103104131	3300031544	Soil	LDRLKVVAGNVFRGRGETVTDIKIIPSEKPALQVLH
Ga0318538_104540841	3300031546	Soil	FEDLLGRLKVLAGNLFRARGEPVAEIEIVRSENPALHVFF
Ga0318528_101064053	3300031561	Soil	DEVPGLGVWGRNYEDLLDRLKATAGNLFRARGETVTDIKIIPSERPALQVFH
Ga0310915_112202211	3300031573	Soil	GPNYEDLLDRLKVVAGNLFRARGETVTEIKIIPSERPALQVFH
Ga0318560_105001471	3300031682	Soil	GVVFGLGVGVLGPDYEVLLERLKGVAEDLFRERGETIADMEIIRSEKPALHVFH
Ga0307474_108054692	3300031718	Hardwood Forest Soil	NYENLLERLKVLAGNLFRAQGATVTDIKIVRSEKPVLHVFH
Ga0306917_101336312	3300031719	Soil	VDEVGLGVLGPNFEDLLDRLKVLAGNLFRARGETVTDLEIVRSERLALHVFH
Ga0306917_110560231	3300031719	Soil	LLDRLKVVAGNVFRARGETVTDIKIIPSEKPALQVLH
Ga0318492_105722591	3300031748	Soil	GRNYEDLLDRLKAAAGNLFRARGETVTDIKIIPSERPALQVFH
Ga0318494_106963021	3300031751	Soil	DRLKAAAGNLFRARGKNVTDIKIIPSERPALQVFH
Ga0318546_110710241	3300031771	Soil	DEVPGLGVLGPNYEDLLDRLKVVAGNVFRARGESVTDIKIIPAERPALQVLH
Ga0318508_10364561	3300031780	Soil	LGVVGPNFDDLLGRLKVLAGNLFRARGEPVAEIEIVRSENPALHVFF
Ga0318508_10810681	3300031780	Soil	WFIFVDEVPGLGVLGPNYEDLLDRLKVVAGNLFRARGETVTDIKIIPSERPALQVFH
Ga0318576_104842471	3300031796	Soil	VDEVGLGVLGPNFEDLLDRLKVLAGNLFRARGETVVDVEIVRSEKLA
Ga0318550_106428841	3300031797	Soil	WFIFVDEVPGLGVLGPNYEDLLDRLKVVAGNVFRARGETVTDIKIIPSEKPALQVLH
Ga0318567_106226742	3300031821	Soil	EDLLDRLKAAAGNLFRARGKNVTDIKIIPSERPALQVFH
Ga0318499_103823981	3300031832	Soil	DLLDRLKVVAGNVFRARGETVTDIKIIPSERPALQVLH
Ga0318511_105530141	3300031845	Soil	LGVWGRNYEDLLDRLKAAAGNLFRARGETVTDIKIIPSERPALQVFH
Ga0306925_108138531	3300031890	Soil	EVPGLGVLGPNYEDLLDRLKVVAGNLFRARGETVTEIKIIPSERPALQVFH
Ga0306925_118822001	3300031890	Soil	DRLKVLAGNLFRARGETVTDLEIVRSEKPALHVFH
Ga0306925_121597241	3300031890	Soil	VPGLGVVGPNFEDLLGRLKVLAGNLFRARGEPVAEIEIVRSENPALHVFY
Ga0306923_102731552	3300031910	Soil	VDEVGLGVLGPNFEDLLDRLKVLAGNLFRARGETVADVEIVRSEKPALHVFH
Ga0306923_113943571	3300031910	Soil	VDEVGLGVLGPNFEDLLDRLKVLAGNLFRARGETVVDVEIVRSEKLALHVSH
Ga0306921_112522151	3300031912	Soil	EVGLGVLGPNFEDLLDRLKVLAGNLFRARGETVTDLEIVRSEKPALHVFH
Ga0306921_122557631	3300031912	Soil	LDGWWFIFIDEVPELAVVGPNYEDLLDRIKVLAGDLFRARGETVTDIKIISSKKPALQVF
Ga0310912_106554381	3300031941	Soil	GLGVLGPNFEDLLDRLKVLAGNLFRARGETVADVEIVRSEKPALHVFH
Ga0310916_104100732	3300031942	Soil	GVLGPNFEDLLDRLKVLAGNLFRARGETVTDLEIVRSEKPALHVFH
Ga0310913_102636601	3300031945	Soil	VDEVGLGVLGPNFEDLLDRLKVLAGNLFRARGETVTDLEIVRS
Ga0306926_103632483	3300031954	Soil	LGPNYEDLLDRLKVVAGNLFRARGETVTEIKIIPSERPALQVFH
Ga0318530_102560981	3300031959	Soil	LGVLGPNYEDLLDRLKVVAGNLFRARGETVTDIKIIPSERPALQVFH
Ga0318507_104654062	3300032025	Soil	NYEDLLDRLKAAAGNLFRARGKNVTDIKIIPSERPALQVFH
Ga0310911_100977032	3300032035	Soil	VDEVGLGVLGPDFEDLLDRLKVLAGNLFRARGETVTDLEIVRSERLALHVFH
Ga0318533_111660351	3300032059	Soil	GPNFEDLLDRLKVLAGNLFRARGETVTDLEIVRSERLALHVFH
Ga0318510_103779372	3300032064	Soil	DEVPGLGVWGRNYEDLLDRLKAAAGNLFRARGKNVTDIKIIPSERPALQVFH
Ga0306924_125049861	3300032076	Soil	DEVPGLGVLGPNYEDLLDRLKVVAGNVFRARGETVTDIKIIPSERPALQVLH
Ga0307471_1012356181	3300032180	Hardwood Forest Soil	DLLDRLKVIAGNLFRARGETVTDIKIISSEKPALQVFH
Ga0306920_1011311003	3300032261	Soil	IFVDEVPGLGVWGRNYEDLLDQLKATAGNLFRARGETVTDIKIIPSERPALQVFH
Ga0306920_1017057123	3300032261	Soil	PGLGVLGPNYEDLLDRLKVVAENVFRARGEAVTDIKIIPSERPALQVLH
Ga0306920_1024776741	3300032261	Soil	DGWWFIFVDEVGLGVLGPNFEDLLDRLKVLAGNLFRARGETVADVEIVRSEKPALHVFH
Ga0306920_1034915661	3300032261	Soil	LLERLKGVAEDFFRERGETIADMEIVRSEKPALHVF
Ga0310914_102973283	3300033289	Soil	WWFIFVDEVGLGVLGPNFEDLLDRLKVLAGNLFRARGETVADVEIVRSEKPALHVFH
Ga0318519_109620921	3300033290	Soil	EDLLDRLKVVAGNVFRARGESVTDIKIIPSERPALQVLH

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F090108

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences