Metagenome / Metatranscriptome Family F090109

Basic Information
Family ID	F090109
Family Type	Metagenome / Metatranscriptome
Number of Sequences	108
Average Sequence Length	55 residues
Representative Sequence	MNSIATSIVIIPGVVALLLCLLFTYLYQQSRQAYFRAWQIAWACYSIHYALD
Number of Associated Samples	99
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	100.00 %
% of genes near scaffold ends (potentially truncated)	2.78 %
% of genes from short scaffolds (< 2000 bps)	2.78 %
Associated GOLD sequencing projects	93
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Unclassified (97.222 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa (12.037 % of family members)
Environment Ontology (ENVO)	Unclassified (28.704 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (55.556 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 71.15% β-sheet: 0.00% Coil/Unstructured: 28.85%
Feature Viewer

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Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF00749	tRNA-synt_1c	85.19
PF01987	AIM24	1.85
PF03950	tRNA-synt_1c_C	1.85
PF01523	PmbA_TldD	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG0008	Glutamyl- or glutaminyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	87.04
COG2013	AIM24 protein, required for mitochondrial respiration	Energy production and conversion [C]	1.85
COG0312	Zn-dependent protease PmbA/TldA or its inactivated homolog	General function prediction only [R]	0.93

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.22 %
All Organisms	root	All Organisms	2.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.22 %
cellular organisms	root	All Organisms → cellular organisms	2.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.22 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	2.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.22 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.22 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.22 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	1.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.22 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.85 %

Scaffold	Taxonomy	Length	IMG/M Link
3300005338\|Ga0068868_100576215	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	995	Open in IMG/M
3300005466\|Ga0070685_10114376	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1667	Open in IMG/M
3300028560\|Ga0302144_10241439	All Organisms → cellular organisms → Bacteria	585	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.30%
Host-Associated	Host-Associated	3.70%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	73.15%
Aquatic	Environmental → Aquatic	23.15%
Plants	Host-Associated → Plants	3.70%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	50.00%
Freshwater	Environmental → Aquatic → Freshwater	23.15%
Peat	Environmental → Terrestrial → Peat	23.15%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.85%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.93%
Roots	Host-Associated → Plants → Roots	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	29.63%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	23.15%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	23.15%
Loam	Environmental → Terrestrial → Soil → Loam	14.81%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	5.56%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.93%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.93%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	23.15%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	13.89%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	12.96%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	12.96%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	11.11%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	8.33%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.63%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	3.70%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.70%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	12.04%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.26%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	8.33%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	8.33%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	8.33%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	7.41%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	5.56%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	4.63%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	3.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.70%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.70%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.70%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.78%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.85%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	1.85%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	1.85%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.93%
Thawing Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Thawing Permafrost	0.93%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.93%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.93%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.93%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.93%
Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Roots	0.93%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.93%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001175	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O3	Environmental	Open in IMG/M
3300001648	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF008	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009624	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_10	Environmental	Open in IMG/M
3300009628	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_10	Environmental	Open in IMG/M
3300009665	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300009759	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_10	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014169	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG	Environmental	Open in IMG/M
3300014654	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaG	Environmental	Open in IMG/M
3300017941	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_150	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300018008	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_40	Environmental	Open in IMG/M
3300018013	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_100	Environmental	Open in IMG/M
3300018019	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_150	Environmental	Open in IMG/M
3300018023	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_100	Environmental	Open in IMG/M
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental	Open in IMG/M
3300018044	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018088	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022873	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P3 10-14	Environmental	Open in IMG/M
3300024227	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU4	Host-Associated	Open in IMG/M
3300025412	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_10 (SPAdes)	Environmental	Open in IMG/M
3300025414	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_10 (SPAdes)	Environmental	Open in IMG/M
3300025442	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_100 (SPAdes)	Environmental	Open in IMG/M
3300025446	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_100 (SPAdes)	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300027505	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O3 (SPAdes)	Environmental	Open in IMG/M
3300027559	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O3 (SPAdes)	Environmental	Open in IMG/M
3300027567	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O2 (SPAdes)	Environmental	Open in IMG/M
3300027568	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG (SPAdes)	Environmental	Open in IMG/M
3300027590	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O1 (SPAdes)	Environmental	Open in IMG/M
3300027662	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG (SPAdes)	Environmental	Open in IMG/M
3300027803	Thawing permafrost microbial communities from the Arctic, studying carbon transformations - Permafrost 712S3S	Environmental	Open in IMG/M
3300027853	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300028036	Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE2	Host-Associated	Open in IMG/M
3300028560	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E2_2	Environmental	Open in IMG/M
3300028574	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N2_2	Environmental	Open in IMG/M
3300028746	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_1	Environmental	Open in IMG/M
3300028747	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_2	Environmental	Open in IMG/M
3300028795	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_1	Environmental	Open in IMG/M
3300028806	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_1	Environmental	Open in IMG/M
3300028863	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_1	Environmental	Open in IMG/M
3300028874	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N3_1	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029908	II_Bog_E1 coassembly	Environmental	Open in IMG/M
3300029914	III_Bog_E2 coassembly	Environmental	Open in IMG/M
3300029953	II_Bog_E3 coassembly	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030011	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_E2_3	Environmental	Open in IMG/M
3300030020	II_Bog_N1 coassembly	Environmental	Open in IMG/M
3300030045	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_E1_3	Environmental	Open in IMG/M
3300030524	II_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300030580	II_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030659	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG (v2)	Environmental	Open in IMG/M
3300030688	II_Bog_N2 coassembly	Environmental	Open in IMG/M
3300030706	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG (v2)	Environmental	Open in IMG/M
3300030878	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031028	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_2	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300033545	Spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRE4	Host-Associated	Open in IMG/M
3300033755	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB26FY SIP fraction	Environmental	Open in IMG/M
3300034163	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_04D_14	Environmental	Open in IMG/M
3300034199	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_01D_14	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12649J13570_10248072	3300001175	Forest Soil	MDSISTSIVIIPGVVALLLCLLFGYLYQQSRQVYFRVWQIAWACYSIHYALDALRYYRPPATAAFFASSLFL
JGI20242J16303_1068251	3300001648	Forest Soil	MNSIATSIVIIPGVVALLLCLLFTYLYQQSRQAYFRAWQIAWACYSI
JGIcombinedJ26739_1005541953	3300002245	Forest Soil	MNSISTSILIIPGVVALLLCTLFSYLYQQSQQVYFRAWQIAWACYSIHYALDAFRYYRPPAPVA
JGIcombinedJ26739_1018360182	3300002245	Forest Soil	MXXISTSIVIIPGVVALLLCMLFSYLYQQSQQVYFRAWQIAWACYS
Ga0062389_1046489611	3300004092	Bog Forest Soil	MNSIATSIVIIPGVVALLLCLLFTYLYQQSRQAYFRAWQVAWAFYSIHYALDAFRYYHPPAYPALFLSEL
Ga0062388_1024125611	3300004635	Bog Forest Soil	MNSINSIATSIVIIPGVVALLLCLLFTYLYQQSRQAYFRAWQVAWA
Ga0068868_1005762152	3300005338	Miscanthus Rhizosphere	MNNVATSMVIIPGVVALLLFLVFTYLYEQSRQQYFRAWQLGWGAYTLHFALDAWA
Ga0066687_101815782	3300005454	Soil	MINGVMTSVVIIPGIVALLIFLLFTYLYEQSRQGYFRAWQIAWGAYCVHYGLDAWNYYRA
Ga0070685_101143761	3300005466	Switchgrass Rhizosphere	MNNVATSMVIIPGVVALLLFLVFTYLYEQSRQQYFRAWQLGWGAYTLHFALDAW
Ga0070735_104255371	3300005534	Surface Soil	MNSMATSIVIIPGVVALLLCLLFTYLYEQSRQAYFR
Ga0070761_101796821	3300005591	Soil	MNSIAASIVIIPGVVALLLCLLFTYLYLQSRQAYFRAWQIAWACYSIHYGLDAFRYLRPPAPAAFFASSL
Ga0070761_107985331	3300005591	Soil	MNSIATSIVIIPGVVALLLYMLFTYLYQQSRQAYFRAWQIAW
Ga0066651_100378061	3300006031	Soil	MNNIALSSMLLPGVVPLLLFLVFTYLYQQSRQPYFRAWQFAWAAYAL
Ga0066660_108456202	3300006800	Soil	MNSIATSIVIIPGVVALLLCLLFTYLHQQSRQAYFRAWQVAWACYTVHYALDAFRYFYPPAPVAFFFSSLF
Ga0099792_105647521	3300009143	Vadose Zone Soil	MNSIATSIVIIPGVVALLLCLLFTYLYQQSRQAYFR
Ga0116105_11068681	3300009624	Peatland	MNSLSSSIVIIPGVVALLLCLLFSFLYQQSRQLYFRAWQIAWACYSIHYALDALRYFRPPAPAAF
Ga0116125_10848792	3300009628	Peatland	MNSASPSIVIIPGVVALLLCLLFTYLYQQSRQVYFRAWQIAWA
Ga0116135_13546661	3300009665	Peatland	MNSMATSIVIIPGVVALLLFLLFSYLYQQSRQSYFRAWQIAWAC
Ga0116217_105203071	3300009700	Peatlands Soil	MNSIATSIVIIPGVVALLLCLLFTYLYQQSRQAYFRAWQVAWACYSIHYA
Ga0116101_10449602	3300009759	Peatland	MATSIVIIPGVVSLLLCLLFTYLYQQSRQAYFRAWQIAWACYSIHYALDAFR
Ga0137362_112944111	3300012205	Vadose Zone Soil	MNSIATSIVIIPGVVALLLCLLFTYLYQQSRQAYFRAWQIAWACYSIHYALDAFRYFYPPAPVAFLFSSLFSV
Ga0137361_116056411	3300012362	Vadose Zone Soil	MNSIATSIVIIPGVVALLLCLLFTYLYQQSRQAYFRAWQIAWACYSIHY
Ga0137413_106594852	3300012924	Vadose Zone Soil	MNSIATSIVIIPGVVALLLCLLFTYLYQQSRQAYFRAWQVAWACYSIHYAL
Ga0181531_110489941	3300014169	Bog	MNSLSSSIVIIPGVVALLLCLLFSFLYQQSRQLYFRAWQIAWACYSIHYALDALRYFRPPAPAAFFASSLFSV
Ga0181525_100860732	3300014654	Bog	MNNIAANIVIIPGVVALLLCLLFTYLYLQSRQAYFRAWQIAWACYSIHYALDAFRYLRPP
Ga0187850_100890912	3300017941	Peatland	MNSMATSIVIIPGVVSLLLCLLFTYLYQQSRQAYFRAWQIAWACYSIHYALDAFRYFRPPAL
Ga0187819_106858682	3300017943	Freshwater Sediment	MNSIATSIVIIPGVVALLLCLLFTYLYQQSRQAYFRAWQIAWACYSIHYALDAFHYYRPPAHAAF
Ga0187879_105522052	3300017946	Peatland	MNSIATSIVIIPGVVALLLCLLFTYLYQQSRQAYFRAWQIAWACYSIHYALDAFRYYYPPAT
Ga0187817_104063641	3300017955	Freshwater Sediment	MNSIATSIVIIPGVVALLLCLLFTYLYQQSRQAYFRAWQIAWACCSIHYALDAFHYYRPPAHAAFF
Ga0187783_105046361	3300017970	Tropical Peatland	MNSIATSIVIIPGVVALLLCLLFSYLYEQSRQAYFRAWQI
Ga0187816_104421511	3300017995	Freshwater Sediment	MNSIATSIVIIPGVVALLLCLLFTYLYQQSRQAYFRTWQIAWAFYSIHYALDAFR
Ga0187804_105782071	3300018006	Freshwater Sediment	MNSIATSIVIIPGVVALLLCLLFTYLYQQSRQAYFRAWQIAWACYSIHYALD
Ga0187888_12877551	3300018008	Peatland	MNSITTSIVIIPGVVALLLCLLFSYLYQQSRQVYFLAWQVAWACYSIHYALDAFR
Ga0187873_13107701	3300018013	Peatland	MNSMATSIVIIPGVVSLLLCLLFTYLYQQSRQAYFRAWQIAWACYSIHYARDAFRY
Ga0187874_100546731	3300018019	Peatland	MNSITTSIVIIPGVVALLLCLLFSYLYQQSRQVYFLAWQVAWACYSIHYALDAFRFYRPPAQSAFFISSLFLVAM
Ga0187889_104277272	3300018023	Peatland	MNSIATSIVIIPGVVALLLCLLFTYLYQQSRQAYFRAWQIAWACYSIHYALDAFRYYYPP
Ga0187871_102626131	3300018042	Peatland	MNSISTSIVIIPGVVALLLCLLFYYLYQQSQQIYFRAWQIAWACYSIHYALDAVRYYRPPALAVFFASS
Ga0187890_103614762	3300018044	Peatland	MNNIATSIVVIPGVVALLLCLLFSFLYQQSRQLYFRAWQVAWACYSIHYALDAFRYFRPPAPAAFLASSLFSVAMG
Ga0187772_111068831	3300018085	Tropical Peatland	MNSIATSIVIIPGMVALLLCLLFTYLYRQSHQTYFRAWQIAW
Ga0187771_112926461	3300018088	Tropical Peatland	VNSVATSMAIIPGSVALLLFLVFSYLYEQSRQVYFRAWQWAWAAYSVHYALDAFCYYHPPAPLAYFTS
Ga0210395_108976871	3300020582	Soil	MNSIATSIVIIPGVVALLLCLLFTYLYQQSRQAYFRAWQIAWACYAIHYALDALRYYRPPATAA
Ga0210400_113475091	3300021170	Soil	MNSASPSIVIIPGVVALLLCLLFTYLYQQSRQVYFRAWQIAWACYSIYY
Ga0210405_107667891	3300021171	Soil	MNSITTSIVIIPGVVALLLCALFSYLYQQSRQLYFRAWQIAWACYSIHYALDAFR
Ga0210388_110874252	3300021181	Soil	MNSIATSIVIIPGVVALLLYMLFIYLYRQSRQAYFRAWQIAWA
Ga0210393_115228582	3300021401	Soil	MNSIATSIVIIPGVVALLLCLLFTYLYQQSRQAYFRAWQIAWACYA
Ga0210385_114144001	3300021402	Soil	MNSLATSIVIIPGVVAVLLCLLFTYLYQQSPQAYFRAWQVAWACYSIHYALDAFRYY
Ga0210397_110701251	3300021403	Soil	MNSIATSIVIIPGVVALLLCLLFTYLYQQSRQAYFRAWQIAWACYSIHYALDALRFFHPPATSAF
Ga0210391_111556521	3300021433	Soil	MNSVSTSIVFIPGVVALLLCLLFTYLYQQSQQVYFRAWQLAWACYSIHYALDAY
Ga0210392_106737902	3300021475	Soil	MNSITTSIVIIPGVVALLLCALFSYLYQQSRQLYFRAWQI
Ga0210409_109284212	3300021559	Soil	MNSIATSIVIIPGVVALLLCLLFTYLYQQSRQAYFRAWQVAWALYSIHYALDAFRYYYPPAPVAFFFSS
Ga0224550_10416701	3300022873	Soil	MNNATTSIVIIPGVVALLLCLLFGYLYQQSRQIYFRVWQIAWACYSIHYALDALRFYRPPAPAAYFLSSL
Ga0228598_10560211	3300024227	Rhizosphere	MFSPGLMNSIATSIVIIPGVVALLLCLLFTYLYQQSRQAYFRAWQIAWACYSIHYAL
Ga0208194_10159342	3300025412	Peatland	MNSLSSSIVIIPGVVALLLCLLFSFLYQQSRQLYFRAWQIAWACYSIHYALDALRYFRPPAPAAFFASSLF
Ga0208935_10345432	3300025414	Peatland	MNSLSSSIVIIPGVVALLLCLLFSFLYQQSRQLYFRAWQIAWACYSIHYALDALRYFRPPAPAA
Ga0208935_10365402	3300025414	Peatland	MNSIATSIVIIPAVVAVLLCLLFSYLYEQSRQAYFRAWQIAWACYSIHCALAAFRYYRPPALAAFFFSALFSV
Ga0208034_10755421	3300025442	Peatland	MNSISTSIVIIPGVVALLLCLLFSYLYQQSRQVYFRAW
Ga0208038_10797931	3300025446	Peatland	MNSISTSIVIIPGVVALLLCLLFSYLYQQSRQVYFRAWQIAWACYSIHYALDAFRYYRPPAQAAFFASSLFSVAM
Ga0209577_105715122	3300026552	Soil	MNSIATSIVIIPGVVALLLCLLFTYLHQQSRQAYFRAWQVAWACYTVHYALDAFRYFYP
Ga0209218_10831241	3300027505	Forest Soil	MNSISTSILIIPGVVALLLCTLFSYLYQQSQQVYFR
Ga0209222_10964251	3300027559	Forest Soil	MNSVSTTIVIIPGVVALLLCLLFTYLYQQSQQVYFRAWQLAWACNSIHYALDAFRFYYPPAKIAFFG
Ga0209115_10996822	3300027567	Forest Soil	MNSISTSIVIIPGVVALLLCLLFYYLYQQSQQVYFRAWQIAWA
Ga0208042_11296751	3300027568	Peatlands Soil	MNSIATSIVIIPGVVALLLCLLFTYLYQQSPQAYFRAWQIAWACYSIHYALDAFRYYYPPAPAAFFFSSLFSIAM
Ga0209116_10827382	3300027590	Forest Soil	MNSIATSIVIIPGVVALLLCLLFTYLYQQSRQAYFRAWQVAWACYAIHYALDAFRFFRPPASAACAWTSGGAAS
Ga0208565_11831861	3300027662	Peatlands Soil	MSSVATSIVIIPGVVALLLCLLFWYLYQQSRQAYFLAWQIAWACYSIHYALDALRYYRPPAHAAYFASSLFSVAMA
Ga0209910_100233482	3300027803	Thawing Permafrost	MNSIATSIVIIPGVVALLLCLLFTYLYQQSRQTYFRAWQIAWACYSIHYALDAFR
Ga0209274_104976591	3300027853	Soil	MNSIATSIVIIPGVVALLLYMLFTYLYQQSRQAYFRAWQIAWACYCI
Ga0209693_106027122	3300027855	Soil	MNSIATSIVVIPGVVIPGLVALLLYILFTYLYQQSRQAYFRAWQIAWACY
Ga0209275_105582591	3300027884	Soil	MNSIATSIVVIPGVVIPGLVALLLYILFTYLYQQSRQAYF
Ga0209624_108111581	3300027895	Forest Soil	MNSISTSIVIIPGVVALLLCLLFSYLFQQSRQVYFRAWQIAWACYSIHYALDAYRYFRPPALWAFFI
Ga0265355_10116221	3300028036	Rhizosphere	MNSISISIVIIPGLVALLLCALFSYLYQQSRQIYFRAWQIAWACY
Ga0302144_102414391	3300028560	Bog	MNSIATSIVIIPGVVALLLCLLFTYLYQQSRQAYFRAWQIAWACYSIHYALDAFRYYYPPAPVAFFFSSLFSIAMA
Ga0302153_102357482	3300028574	Bog	MNSMATSIVIIPGVVALLLCLLFTYLYQQSRQAYFRA
Ga0302233_102214411	3300028746	Palsa	MNSIATSTGVVALLLCLLFWYLYQQSRQAYFLAWQIAWACYTIHY
Ga0302219_101871461	3300028747	Palsa	MNSIATSTGVVALLLCLLFWYLYQQSRQAYFLAWQIAWACYTIHYALDAFLYYRPPAP
Ga0302219_103443701	3300028747	Palsa	MNSITASIVIIPGVVALLLCLLFTYLYLQSRQAYFRAWQIAW
Ga0302227_103269282	3300028795	Palsa	MNSIATSTGVVALLLCLLFWYLYQQSRQAYFLAWQIAWACYTIHYAL
Ga0302221_100038491	3300028806	Palsa	MNSIATSTGVVALLLCLLFWYLYQQSRQAYFLAWQIAWACYTIHYALDAFLYYRPPAPAA
Ga0302218_102478072	3300028863	Palsa	MNSIATSIVIIPGVVALLLCLLFTYLHQQSRQAYFRAWQIAWACYSIHYALDALRYFHPPATV
Ga0302155_101265891	3300028874	Bog	MNSIATSIVIIPGVVALLLCLLFTYLYQQSRQTYFRAWQIAWACYSIHYALDAFRYYY
Ga0308309_111625662	3300028906	Soil	MNSIATSIVIIPGVVALLLCLLFTYLYQQSRQAYFRAWQVAWAF
Ga0311341_104815852	3300029908	Bog	MNSMATSIVIIPGVVALLLCLLFTYLYQQSRQAYFRAWQVAWACYSIHYALDAFRY
Ga0311359_101871432	3300029914	Bog	MNSIATSIVIIPGVVALLLCLLFTYLYQQSRQAYFRAWQIAWACYSIHYALDAFRYYYPPAPVAFF
Ga0311343_104198642	3300029953	Bog	MNSMATSIVIIPGVVALLLCLLFTYLYQQSRQAYFRAWQVAWACYSIHYAL
Ga0311339_100108921	3300029999	Palsa	MNSIATSTGVVALLLCLLFWYLYQQSRQAYFLAWQIAWACYTIHYA
Ga0311339_106406631	3300029999	Palsa	MNSMATSTGVVALLLCLLFWYLYQQSRQAYFLAWQIAWACYTIHYA
Ga0311339_115037351	3300029999	Palsa	MNSIATSIVIIPGVVALLLCLLFTYLYQQSRQAYFRAWQIAWACYTIHYALDAFRYYYPPATAAF
Ga0302270_106796232	3300030011	Bog	MNSIATSIVIIPGVVALLLCLLFTYLYQQSRQAYFRAWQIAWACYSIH
Ga0311344_114321312	3300030020	Bog	MNSISNSIVIIPGVVALLLCLLFSYLYQQSRQGYFRAWQIAWACYSIHYALDALRFYLPP
Ga0302282_13618821	3300030045	Fen	MNSIATSIVIIPGVVALLLCLLFTYLYQQSRQAYFRA
Ga0311357_101398624	3300030524	Palsa	MNSIATSIVIIPGVVALLLCLLFTYLYQQSRQAYFRAWQVAWACYAIHYALDAFRFFRPP
Ga0311355_107397441	3300030580	Palsa	MNSIATSIVIIPGVVALLLCLLFTYLYQQSRQAYFRAWQIAWACYTIHY
Ga0316363_100366794	3300030659	Peatlands Soil	MDSISTSIVIIPGVVALLLCLLFSYLYQQCRQVYFRAWQIAWACYSIHYALDAYRYFRPPAHAAFFLSSLFLV
Ga0311345_108900502	3300030688	Bog	MNSIATSIVIIPGVVALLLCLLFTYLYQQSRQAYF
Ga0310039_102212832	3300030706	Peatlands Soil	MSSVATSIVIIPGVVALLLCLLFWYLYQQSRQAYFLAWQIAWACYSIHYALDALRYYRPPAHAAYFASSL
Ga0265770_11465341	3300030878	Soil	MNSIATSIVIIPGVVALLLCLLFTYLYQQSRQAYFRAWQIAWACYSIHYALDAFRYYYPPATVVYFFSSLFS
Ga0302180_1000251015	3300031028	Palsa	MNSIATSTGVVALLLCLLFWYLYQQSRQAYFLAWQIAWA
Ga0302180_105048601	3300031028	Palsa	MNSIATSIVIIPGVVALLLCLLFTYLYQQSRQAYFRAWQIAWACYTIHYALDAFRYYYPPAT
Ga0310686_1006972851	3300031708	Soil	MNSIATSIVIIPGVVALLLYMLFTYLYQQSRQAYFRA
Ga0310686_1054422781	3300031708	Soil	MNSIATSIVIIPGVVALLLCLLFTYLYRQSRQAYFRAWQ
Ga0310686_1075376961	3300031708	Soil	MNSIATSIVIIPGVVALLLCLLFTYLYQQSRQAYFRAWQIAWACYSIHYALDALRFFHPPATSAFFVSS
Ga0307474_111427132	3300031718	Hardwood Forest Soil	MNSISTSIVIIPGVVALLLCMLFSYLYQQSRQLYFRAWQIAWACYSIHYALDAFRFYR
Ga0307477_100557134	3300031753	Hardwood Forest Soil	MNSIATSIVIIPGVVALLLCLLFTYLYQQSRQAYFRAWQIAWACYSIHYA
Ga0307475_113160562	3300031754	Hardwood Forest Soil	MNSIATSIVIIPGVVALLLCLLFTYLYQQSRQAYFRAWQ
Ga0307478_100798333	3300031823	Hardwood Forest Soil	MNSISTSILIIPGVVALLLCTLFSYLYQQSQQVYFRAWQIAWACYSIHYALDAFRYYRPP
Ga0316214_10573712	3300033545	Roots	MNSIATTIVIIPGVVALLLCLLFTYLYQQSQQAYFRAWQIAWACYSIHYALDALRY
Ga0371489_0048045_2753_2881	3300033755	Peat Soil	MNSISTSTAVIPGVVALLLCLLFSFLYQQSRQLYFRAWQIAWA
Ga0370515_0144878_848_1018	3300034163	Untreated Peat Soil	MDSISTSIVIIPGVVALLLCLLFGYLYQQSRQVYFRVWQIAWACYSIHYALDALRYY
Ga0370514_053369_884_1015	3300034199	Untreated Peat Soil	MNSIATSIVIIPGVVALLLCLLFTYLYQQSRQAYFRAWQIAWAC

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F090109

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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