NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F090161

Metagenome Family F090161

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F090161
Family Type Metagenome
Number of Sequences 108
Average Sequence Length 69 residues
Representative Sequence MADVQDEIELLQIEIEKANAAIAKALRDRRALHKDSPLVADFNAAVTAARQALIAVEIKLRTLYESKGD
Number of Associated Samples 65
Number of Associated Scaffolds 108

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 69.57 %
% of genes near scaffold ends (potentially truncated) 22.22 %
% of genes from short scaffolds (< 2000 bps) 78.70 %
Associated GOLD sequencing projects 61
AlphaFold2 3D model prediction Yes
3D model pTM-score0.67

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (81.481 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere
(12.963 % of family members)
Environment Ontology (ENVO) Unclassified
(37.963 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(49.074 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 60.82%    β-sheet: 0.00%    Coil/Unstructured: 39.18%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.67
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 108 Family Scaffolds
PF00313CSD 3.70
PF12704MacB_PCD 1.85
PF00072Response_reg 0.93
PF00106adh_short 0.93
PF13432TPR_16 0.93
PF01019G_glu_transpept 0.93
PF01966HD 0.93
PF12796Ank_2 0.93
PF05050Methyltransf_21 0.93
PF02371Transposase_20 0.93
PF13517FG-GAP_3 0.93
PF07592DDE_Tnp_ISAZ013 0.93
PF13414TPR_11 0.93
PF08448PAS_4 0.93
PF13304AAA_21 0.93
PF02321OEP 0.93
PF01839FG-GAP 0.93
PF07690MFS_1 0.93
PF06182ABC2_membrane_6 0.93

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 108 Family Scaffolds
COG1538Outer membrane protein TolCCell wall/membrane/envelope biogenesis [M] 1.85
COG0405Gamma-glutamyltranspeptidaseAmino acid transport and metabolism [E] 0.93
COG3547TransposaseMobilome: prophages, transposons [X] 0.93
COG3694ABC-type uncharacterized transport system, permease componentGeneral function prediction only [R] 0.93

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A81.48 %
All OrganismsrootAll Organisms18.52 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000956|JGI10216J12902_110504906All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales1272Open in IMG/M
3300004114|Ga0062593_102286637Not Available608Open in IMG/M
3300004114|Ga0062593_103302641Not Available517Open in IMG/M
3300004157|Ga0062590_100718114Not Available903Open in IMG/M
3300004643|Ga0062591_100691457Not Available920Open in IMG/M
3300004643|Ga0062591_101379226Not Available698Open in IMG/M
3300004643|Ga0062591_101783842Not Available627Open in IMG/M
3300004643|Ga0062591_102545725All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas putida group → Pseudomonas putida538Open in IMG/M
3300005093|Ga0062594_103051667Not Available523Open in IMG/M
3300005295|Ga0065707_10320323Not Available931Open in IMG/M
3300005332|Ga0066388_101045722Not Available1374Open in IMG/M
3300005332|Ga0066388_101930841Not Available1055Open in IMG/M
3300005332|Ga0066388_102567651Not Available927Open in IMG/M
3300005434|Ga0070709_10660479Not Available810Open in IMG/M
3300005436|Ga0070713_100495963Not Available1152Open in IMG/M
3300005444|Ga0070694_101730970Not Available532Open in IMG/M
3300005458|Ga0070681_10860671All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Anatilimnocola824Open in IMG/M
3300005458|Ga0070681_10946859Not Available780Open in IMG/M
3300005529|Ga0070741_10130198All Organisms → cellular organisms → Bacteria → PVC group2574Open in IMG/M
3300005553|Ga0066695_10907632Not Available503Open in IMG/M
3300005576|Ga0066708_10897349All Organisms → cellular organisms → Bacteria553Open in IMG/M
3300006032|Ga0066696_10081952All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes1897Open in IMG/M
3300006794|Ga0066658_10600052Not Available600Open in IMG/M
3300006797|Ga0066659_11255550Not Available618Open in IMG/M
3300006904|Ga0075424_101253760Not Available789Open in IMG/M
3300006904|Ga0075424_102391338Not Available554Open in IMG/M
3300006914|Ga0075436_100204468Not Available1399Open in IMG/M
3300009012|Ga0066710_100304628All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → unclassified Pirellulales → Pirellulales bacterium2336Open in IMG/M
3300009012|Ga0066710_104303647Not Available532Open in IMG/M
3300009094|Ga0111539_10508088Not Available1404Open in IMG/M
3300009137|Ga0066709_101186206All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Anatilimnocola1124Open in IMG/M
3300009137|Ga0066709_103270623Not Available590Open in IMG/M
3300009162|Ga0075423_12711004Not Available542Open in IMG/M
3300009551|Ga0105238_10640157All Organisms → cellular organisms → Bacteria1073Open in IMG/M
3300009609|Ga0105347_1186120Not Available828Open in IMG/M
3300009609|Ga0105347_1192968All Organisms → cellular organisms → Bacteria816Open in IMG/M
3300009678|Ga0105252_10246784Not Available780Open in IMG/M
3300010360|Ga0126372_10581506Not Available1070Open in IMG/M
3300010375|Ga0105239_13240311Not Available530Open in IMG/M
3300010397|Ga0134124_10490475Not Available1186Open in IMG/M
3300010401|Ga0134121_12150588Not Available594Open in IMG/M
3300011415|Ga0137325_1069902Not Available769Open in IMG/M
3300011439|Ga0137432_1086782Not Available969Open in IMG/M
3300011445|Ga0137427_10013333All Organisms → cellular organisms → Bacteria → Proteobacteria3255Open in IMG/M
3300012206|Ga0137380_11636144Not Available528Open in IMG/M
3300012212|Ga0150985_101988147Not Available1160Open in IMG/M
3300012212|Ga0150985_104578225Not Available802Open in IMG/M
3300012212|Ga0150985_107238256Not Available1177Open in IMG/M
3300012212|Ga0150985_108962803Not Available518Open in IMG/M
3300012212|Ga0150985_109414794Not Available788Open in IMG/M
3300012212|Ga0150985_111529847Not Available648Open in IMG/M
3300012212|Ga0150985_113505610Not Available2184Open in IMG/M
3300012212|Ga0150985_114162485All Organisms → cellular organisms → Bacteria1690Open in IMG/M
3300012212|Ga0150985_114216279Not Available556Open in IMG/M
3300012212|Ga0150985_115539012All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes941Open in IMG/M
3300012212|Ga0150985_119659423Not Available1239Open in IMG/M
3300012212|Ga0150985_119905272Not Available593Open in IMG/M
3300012212|Ga0150985_121237068Not Available1240Open in IMG/M
3300012469|Ga0150984_100690029Not Available613Open in IMG/M
3300012469|Ga0150984_102758343Not Available662Open in IMG/M
3300012469|Ga0150984_102912498Not Available573Open in IMG/M
3300012469|Ga0150984_105759732Not Available1932Open in IMG/M
3300012469|Ga0150984_110672344All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae2540Open in IMG/M
3300012469|Ga0150984_117474903Not Available886Open in IMG/M
3300012469|Ga0150984_122369432Not Available503Open in IMG/M
3300012986|Ga0164304_10492894Not Available893Open in IMG/M
3300012987|Ga0164307_11916648Not Available502Open in IMG/M
3300012988|Ga0164306_10261841All Organisms → cellular organisms → Bacteria1245Open in IMG/M
3300013296|Ga0157374_11099301Not Available815Open in IMG/M
3300013308|Ga0157375_11806417Not Available725Open in IMG/M
3300015053|Ga0137405_1346682All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes1783Open in IMG/M
3300015371|Ga0132258_10492560All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae3063Open in IMG/M
3300015371|Ga0132258_11863811Not Available1515Open in IMG/M
3300015371|Ga0132258_12595061Not Available1266Open in IMG/M
3300015371|Ga0132258_13161144Not Available1137Open in IMG/M
3300015371|Ga0132258_13269395Not Available1116Open in IMG/M
3300015374|Ga0132255_104944751Not Available564Open in IMG/M
3300018083|Ga0184628_10382839Not Available736Open in IMG/M
3300018084|Ga0184629_10685631Not Available517Open in IMG/M
3300018468|Ga0066662_11051914All Organisms → cellular organisms → Bacteria810Open in IMG/M
3300021082|Ga0210380_10052767Not Available1757Open in IMG/M
3300025928|Ga0207700_10444626Not Available1142Open in IMG/M
3300026041|Ga0207639_11667993All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Anatilimnocola597Open in IMG/M
3300031716|Ga0310813_10076176All Organisms → cellular organisms → Bacteria2546Open in IMG/M
3300031716|Ga0310813_10317020Not Available1320Open in IMG/M
3300031716|Ga0310813_10456226Not Available1110Open in IMG/M
3300031716|Ga0310813_11037585Not Available749Open in IMG/M
3300031716|Ga0310813_11543736Not Available619Open in IMG/M
3300031938|Ga0308175_103286356Not Available501Open in IMG/M
3300033412|Ga0310810_11051496Not Available687Open in IMG/M
3300034147|Ga0364925_0274026Not Available629Open in IMG/M
3300034147|Ga0364925_0414109Not Available512Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Avena Fatua RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere12.96%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil10.19%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil9.26%
SoilEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Soil8.33%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere6.48%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere6.48%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil5.56%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil4.63%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere4.63%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere4.63%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment2.78%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil2.78%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil1.85%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil1.85%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere1.85%
SedimentEnvironmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment1.85%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere1.85%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.85%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere1.85%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.85%
Groundwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment0.93%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil0.93%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil0.93%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere0.93%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil0.93%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere0.93%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.93%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000956Soil microbial communities from Great Prairies - Kansas, Native Prairie soilEnvironmentalOpen in IMG/M
3300004114Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5EnvironmentalOpen in IMG/M
3300004157Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2EnvironmentalOpen in IMG/M
3300004479Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAsEnvironmentalOpen in IMG/M
3300004643Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3EnvironmentalOpen in IMG/M
3300005093Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All BlocksEnvironmentalOpen in IMG/M
3300005295Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3EnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005434Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaGEnvironmentalOpen in IMG/M
3300005436Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaGEnvironmentalOpen in IMG/M
3300005437Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaGEnvironmentalOpen in IMG/M
3300005444Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaGEnvironmentalOpen in IMG/M
3300005458Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaGEnvironmentalOpen in IMG/M
3300005529Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1EnvironmentalOpen in IMG/M
3300005553Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144EnvironmentalOpen in IMG/M
3300005576Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157EnvironmentalOpen in IMG/M
3300006032Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145EnvironmentalOpen in IMG/M
3300006794Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107EnvironmentalOpen in IMG/M
3300006797Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108EnvironmentalOpen in IMG/M
3300006904Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3Host-AssociatedOpen in IMG/M
3300006914Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5Host-AssociatedOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009094Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009098Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaGHost-AssociatedOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300009162Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2Host-AssociatedOpen in IMG/M
3300009551Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaGHost-AssociatedOpen in IMG/M
3300009609Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890EnvironmentalOpen in IMG/M
3300009610Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700EnvironmentalOpen in IMG/M
3300009678Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT100EnvironmentalOpen in IMG/M
3300010360Tropical forest soil microbial communities from Panama - MetaG Plot_6EnvironmentalOpen in IMG/M
3300010375Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaGHost-AssociatedOpen in IMG/M
3300010397Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4EnvironmentalOpen in IMG/M
3300010401Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1EnvironmentalOpen in IMG/M
3300011398Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT600_2EnvironmentalOpen in IMG/M
3300011415Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT469_2EnvironmentalOpen in IMG/M
3300011439Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT820_2EnvironmentalOpen in IMG/M
3300011445Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT700_2EnvironmentalOpen in IMG/M
3300012206Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaGEnvironmentalOpen in IMG/M
3300012212Combined assembly of Hopland grassland soilHost-AssociatedOpen in IMG/M
3300012469Combined assembly of Soil carbon rhizosphereHost-AssociatedOpen in IMG/M
3300012986Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MGEnvironmentalOpen in IMG/M
3300012987Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MGEnvironmentalOpen in IMG/M
3300012988Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MGEnvironmentalOpen in IMG/M
3300013296Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaGHost-AssociatedOpen in IMG/M
3300013306Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaGHost-AssociatedOpen in IMG/M
3300013308Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaGHost-AssociatedOpen in IMG/M
3300015053Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300018052Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2EnvironmentalOpen in IMG/M
3300018083Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1EnvironmentalOpen in IMG/M
3300018084Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1EnvironmentalOpen in IMG/M
3300018468Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111EnvironmentalOpen in IMG/M
3300021082Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_coex redoEnvironmentalOpen in IMG/M
3300025927Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025928Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026035Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026041Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026088Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300027533Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700 (SPAdes)EnvironmentalOpen in IMG/M
3300031716Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3EnvironmentalOpen in IMG/M
3300031938Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1EnvironmentalOpen in IMG/M
3300033412Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NCEnvironmentalOpen in IMG/M
3300034147Sediment microbial communities from East River floodplain, Colorado, United States - 44_j17EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI10216J12902_11050490623300000956SoilVADVQSEIDLLQVEIQRANSAITEALRKRKELAKDSPLLPDFNAAVVAARLALTEVEVKIRKLYESKDDE*
Ga0062593_10228663713300004114SoilMDDIQHEIELLQVEIKNANAVIDKAIRERRATAKDSPLMADVNAAVVAAREALAAVEIKLRALYERKGDD*
Ga0062593_10330264113300004114SoilMTDVQAEIGLLQIEIQKANDVITKAISNRRAIGKDSPLAADAQAAVVAARDALAAIEIKLRMLYESKPD*
Ga0062590_10071811423300004157SoilMADVQDEIELLQIEIAKANAAIAKALRDRRAVNKDSPLVADMNSAVVAAKEALAAVEVKLRALYESKSED*
Ga0062590_10214355413300004157SoilMNYPQNELVAQALVPRMNDEQQEIESLQIEIKNANAAIDKAIRDRRGISKDSPLLVDSNAAVAAAREALAAAELRLRSVYERKGDD*
Ga0062595_10115306313300004479SoilMNDEQQEIELLQVEMRSASAAIDKAIRDRRGIAKDSPLLADVNAAVATARAALAAVELRLRNVYERKGDD*
Ga0062595_10157904623300004479SoilMSDQQEIESLQVEIKNASAAIDKAIRDRRGISKDSPLLADSNAAVAAAREALAAAELRLRGVYERKSDD*
Ga0062591_10069145733300004643SoilMADVQDEIELLQIDIEKANAAISKALRDRRAINKDSPLVADFNAAVTAARQALAGVEAKL
Ga0062591_10137922623300004643SoilMTDVQTEIGLLQIEIQKANDVIAKAINNRRAIGKESPLAADAQAAVVAARNALAAVEIKLRMLYESK
Ga0062591_10178384213300004643SoilMADIQAEIELLQIEIQKANDVISKAISNRRAIGKDSPLAADANAAVAAAREALATVEIKLRML
Ga0062591_10254572513300004643SoilRGSELRRANKNKREPVADIQAEIELLQIEMQKANEIITKAIANRRAIGKDSPLAADANAAVTAARYALAAVEIKLRMLYESKND*
Ga0062594_10305166713300005093SoilVYFEVKGSPAPRGQRMADVQDEIELLQIEIAKANAAIAKALRDRRAVNKDSPLVADMNSAVVAAKEALAAVEVKLRALYESKSED*
Ga0065707_1032032313300005295Switchgrass RhizosphereMADIQAEVELLQIEIQKANDVISKAISNRRAIGKDSPLAADANAAVAAAREALATVEIKLRMLYESKPD*
Ga0066388_10104572233300005332Tropical Forest SoilMADIQDDIELLQIEIAKANAAIAKAVRERRAVNKDSPLVADLNAAVVAAREALTAVEVKLRKLYESKGDD*
Ga0066388_10193084123300005332Tropical Forest SoilMDDIQHEIELLQVEIKNANAVIEKAIRERRATAKDSPLMADLNAAVVAAREALAAVEIRLRALYERKGDNHDNSLGNT*
Ga0066388_10256765133300005332Tropical Forest SoilVTLSESDHTRKAIMADVQDEIALLQIESLKANAEIAKAIRERRAMNKDSPLIADCNAAVSAARQALADVEVKLRKLYESKSDD*
Ga0070709_1066047933300005434Corn, Switchgrass And Miscanthus RhizosphereMPDVQDEIEALQAEIEKANAVIAKALRDRRALSKDSPLVADCNAAVAAARQALTVVEMKLRALYE
Ga0070713_10049596323300005436Corn, Switchgrass And Miscanthus RhizosphereMPDVQDEIEALQVEIEKANAVIAKALRERRALSKDSPLVADCNAAVAAARQALAVVEIKLRALYESKDD*
Ga0070710_1029943113300005437Corn, Switchgrass And Miscanthus RhizosphereKANAVIAKALRERRALSKDSPLVADCNAAVAAARQALAVVEIKLRALYESKDD*
Ga0070694_10173097013300005444Corn, Switchgrass And Miscanthus RhizosphereMDDIQHEIELLQVEIASANAVIEKAIRERRATAKDSPLLADVNAAVVAARESLAAVEMKLRALYERKGDD*
Ga0070681_1086067113300005458Corn RhizosphereDNGMGDVQDEIELLQTEIGKANAAIAKALRERRALNKDSPLVDDFNAAVVTARQALVSVEIKLRQLYESKGD*
Ga0070681_1094685923300005458Corn RhizosphereMDDIQHEIELLQVEIASANAVIEKAIRERRATAKDSPLMADVNAAVVAAREALAAVEIKLRALYERKGDD*
Ga0070741_1013019853300005529Surface SoilMDVQDEIELLQIEIQKANAVIAEALRRRKAVAKDSTLAGECNAAVVAAREALAKVEIKLRALYESKED*
Ga0066695_1090763223300005553SoilMDVQDEIELLQVEIDKANAAIAKALKDRRAVNKDSPLVADCNAAVVAARQALTAVEVKLRKLYESKED*
Ga0066708_1089734913300005576SoilMDDIQHEIELLQVEIKSANAIIEKAIRERRATAKDSPLIADLNAAVAAARAALAAVEIKLRALYERKSDD*
Ga0066696_1008195243300006032SoilMANVQDEIELLQVEIEKANAAIAKALRDRRALHKDSPLVADFNAAVTAARQALIAVEIKLRTLYESKGD*
Ga0066658_1060005223300006794SoilQSEIELLQIEIQKANVVISKAISNRRAIGKDSPLAADANAAVAAAREALAAVEIKLRTLYESKPD*
Ga0066659_1125555023300006797SoilMADVQDEIELLQIEIEKANAAIAKALRDRRALHKDSPLVADFNAAVTAARQALIAVEIKLRTLYESKGD*
Ga0075424_10125376023300006904Populus RhizosphereMDNIQDEIELLQIEIQQANAAIDKALRDRRALNKDSPLIADFNAAVASARQALASVEVKLRRLYESKGDD*
Ga0075424_10239133823300006904Populus RhizosphereMDVQEEIELLQLEIDKANAAIAKALRDRRAVNKDSPLVADCNAAVVAARQALTVVEVKLRKLYESKED*
Ga0075436_10020446823300006914Populus RhizosphereMDVQDEIELLQVEIDKANAAITKALKDRRAVNKDSPLVADCNAAVVAARQALTAVEVKLRKLYESKED*
Ga0066710_10030462823300009012Grasslands SoilMADVQDEIELLQIEIQKANAVIVKAIRDRRAVNKDSPLVADFNAAVAAARQALNAVEVKLRKLYESKED
Ga0066710_10430364723300009012Grasslands SoilMADVQDEIELLQVEIQRANAAIAKALRDRRALNKDSPLIADFNAAVVSARQALASVEVKLRKLYESKGDD
Ga0111539_1050808833300009094Populus RhizosphereMDDIQDEIELLQIEIANANAAIAKAVRDRRAVNKDSPLAADCTAAVLAAREALTAVEVKLRKLYESKDDE*
Ga0105245_1296160113300009098Miscanthus RhizosphereQQELNVQQEIELLQVEIRNANAAIDKAIRNRRGISKDSPLLADSNATVVAARAALAAVELRLRNAYERKGDE*
Ga0066709_10118620623300009137Grasslands SoilEIRNANAALDKAVRDRRAINKDSPLIADFNAAVSAARQALIAVEVKLRTLYESKDDG*
Ga0066709_10327062323300009137Grasslands SoilMADVQDEIELLQVEIQRANAAIAKALRDRRALNKDSPLIADFNAAVVSARQALASVEVKLRKLYESKGDD*
Ga0075423_1271100423300009162Populus RhizosphereVQDQIELLQIEITRANAAITKAVSDRRAVSKDSPLVADLNAAIVAAREALTAVEVKLRKLYESKSDD*
Ga0105238_1064015733300009551Corn RhizosphereMTDVQAEIGLLQIEIQKANGVISKAISDRRAIGKDSPLAAEANAAVAAAREALAAVEIKLRMLYESKPD*
Ga0105347_118612013300009609SoilMDDVQDQIALLQVEIEKANAAIAKAVRERRAINKDSPLIADFQAAVATAKQALHNAEVKLRALYESKED*
Ga0105347_119296823300009609SoilMRDATAPQGNMMADVQDEIALLQIDIEKANAAIAKALRDRRATNKDSPLVADFNAAVTAARQALAGVEAKLRILYESKSGD*
Ga0105340_107796513300009610SoilMADLQDEMSLVEQEIEQANAALAKAVRERRSAKGDSPLVAALEAAVVAARNALTDAEVKLRKLYESKDDGG*
Ga0105252_1024678413300009678SoilMDDVQDQIALLQVEIEKANAAITKAVRERRAINKDSPLIADFQAAVATAKQALHNAEVKLRALYESK
Ga0126372_1058150623300010360Tropical Forest SoilMADVQDEIALLQIESLKANAEIAKAIRERRAMNKDSPLIADCNAAVSAARQALADVEVKLRKLYESKSDD*
Ga0105239_1324031123300010375Corn RhizosphereMGDVQDEIELLQTEIGKANAAIAKALRERRALNKDSPLVDDFNAAVVTARQALVSVEIKLRQLYESKGD*
Ga0134124_1049047533300010397Terrestrial SoilMADIQDEIELLKIEIQKANVVITKAISNRRTIGKDSPLASDANTAVTAARHALAAVEIKLRMLYERKDS*
Ga0134121_1215058813300010401Terrestrial SoilMDVQDEIELLRIEIQKANAAIVQAQRERRAVQKDSPLVADLNAAVVAARQALNAVEVKLRKLYESKED*
Ga0137348_100553343300011398SoilMADLQDEMSLVEQEIEQANAALAKAVRERRSAKGDSPLVAALEAAVVAARNALTDAEVKLRKLY
Ga0137325_106990233300011415SoilQIALLQVEIEKANAAITKAVRERRAINKDSPLIADFQAAVATAKQALHNAEVKLRALYESKED*
Ga0137432_108678223300011439SoilMDDVQDQIALLQVEIEKANAAITKAVRERRAINKDSPLIADFQAAVATAKQALHNAEVKLRALYESKED*
Ga0137427_1001333343300011445SoilMRDPTTHKGNIMADVQDEIQLLQIDIEKANAAIAKALRDRRAINKDSPLVADFNAAVTAARQALASVEAKLRILYESKSGGD*
Ga0137380_1163614423300012206Vadose Zone SoilMADVQDEIELLQVEIEKANAAIAKALRDRRALHKDSPLVADFNAAVTAARQALIAVEIKL
Ga0150985_10198814733300012212Avena Fatua RhizosphereELLQNEIQKANAVISKAINNRRAIGKDHPLAAEANAAVAMAREALAAIEIKLRTLYETKPD*
Ga0150985_10457822523300012212Avena Fatua RhizosphereLAASTGGNAMVDVQHEIELLQIEIAKANAEIAKALRERRAVAKDSPLVTDLNAAVVAARQSLVSVEVKLRKLYESKDED*
Ga0150985_10723825623300012212Avena Fatua RhizosphereMADVQDEIELLRLEIEKANATIAKALRDRRALQKDSPLVADCNAAVTAARQALTVVEMKLRALYESKGD*
Ga0150985_10896280313300012212Avena Fatua RhizosphereEIELLQLEIGKANAAIAQALRNRRAIDKNSPLVADCNAAVTSARQALSLVEIKLRTLYESKGD*
Ga0150985_10941479423300012212Avena Fatua RhizosphereMVDVQHEIELLQIEIAKANAEIAKALRERRAVAKDSPLVTDLNAAVVAARQSLVSVEVKLRKLYESKDED*
Ga0150985_11152984723300012212Avena Fatua RhizosphereVADVQSEIELLQIEIKQANDVITKALKDRRAVAKDSPYVAELNAAVTAARQALNSVEVKLRKLYESKEA*
Ga0150985_11350561053300012212Avena Fatua RhizosphereMADVQAEIELLQIEIASANAAIAKAMRDRRAASKDSPLVADLNAAVVAARQALHAVEVKLRNLYESKGED*
Ga0150985_11416248543300012212Avena Fatua RhizosphereMADIEAEIELLQIEIQKANDAINKAISNRRAIGKDSPLTADANTAVAAAREALAAVEIKLRVLYESKPE*
Ga0150985_11421627923300012212Avena Fatua RhizosphereMAQVQDEIELLQAEILKANEVIAASIKNRRAIAKDSPLAADAEAAVVKARQALSSVELKIRALYESKDD*
Ga0150985_11553901213300012212Avena Fatua RhizosphereMENVQSEIELLQDEIKRVNAVIDKAIRERRASGKESPLVPDLNATIATAREALAVVELKLRKLYESRGDD*
Ga0150985_11857533323300012212Avena Fatua RhizosphereMDHDQQAIESLQAEIKSVSATIDKAIRDRRSISKDSPLLADSNAAVAAARQALAAVELRLRSVYERKSDD*
Ga0150985_11965942323300012212Avena Fatua RhizosphereMADVQDEIELLQIEIAKANAAIAKAVRDRRAVNKDSPLVTDFNAAVVAARQALVAVEVKLRKLYESKADD*
Ga0150985_11990527213300012212Avena Fatua RhizosphereMAHVQDEIELLQAEILKANEVIAASIKNRRAIAKDSPLAADAEAAVVKARQALVSVELKVRALYESKGD*
Ga0150985_12123706833300012212Avena Fatua RhizosphereMADIQDEIELLHAEIEKANAVIAKALRDRRALSKDSPLVADCNAAVTAARQALMAVEIKLRTLYESKGD*
Ga0150984_10069002923300012469Avena Fatua RhizosphereVERMADIQSEIELLQIEIQKANEVISKAISNRRAIGKDSPLAAEANAAVATAREALAAVEIKLRMLYESKPD*
Ga0150984_10275834313300012469Avena Fatua RhizosphereMELQDEIELLHGEIKKANEVIAEALRRRKAVAKDSPLVADCNAAVAAARDALAKVEIKLRALYESK
Ga0150984_10291249813300012469Avena Fatua RhizosphereMADIQAEIELLQIEIQKANAVISKAISNRRAIGKDSPLAADANAAVAAAREALATVEIKLRTLYESKPD*
Ga0150984_10575973253300012469Avena Fatua RhizosphereMADVQAEIELLQIEIASANAAIAKAMRDRRAASKDSPLVADLNAAVVAARQALHAVEVKLRNLYESKGDD*
Ga0150984_11067234463300012469Avena Fatua RhizosphereMEVEQMADIQAEIELLQNEIQKANAVISKAINNRRAIGKDHPLAAEANAAVAMAREALAAIEIKLRTLYESKPD*
Ga0150984_11747490313300012469Avena Fatua RhizosphereMADIQAEIELLQTEIQKATVVINKAISNRRAIGKDSPLAADANAAVAAAREALAAVEIKLRTLYESKPD*
Ga0150984_12236943223300012469Avena Fatua RhizosphereMADVQDEIELLHIEIEKANAVIAKALRDRRALHKDSPLVADFNAAVTAARQALIVVEIKLRTLYESKGD*
Ga0164304_1049289423300012986SoilMDNIQDEIELLQIEIQQANAAIDKALRDRRALNKGSPLIADFNAAVASARQALASVEVKLRRLYESKGDD*
Ga0164307_1191664813300012987SoilMDVQDEIELLQIEIDKANAAIVKALRERRAVNKDSPLVADLNAAVVAAREALTAVEVKLRKLYESKED*
Ga0164306_1026184133300012988SoilVADTQDEIELLQIEIQKANDAIAKAVRDRRAIGKDSPLLADLNATIVTARESLAAVEIKLRKLYES
Ga0164306_1044963113300012988SoilNAAIAKATTNRRALGKDSPLVADANAAVTAARQALAAVEIKMRALYESKDD*
Ga0157374_1109930123300013296Miscanthus RhizosphereVADTQDEIELLQIEIQKANDAIAKAVRDRRAIGKDSPLLADLNATIVTARESLAAVEIKLRKLYESKGD*
Ga0163162_1237318023300013306Switchgrass RhizosphereMNDEQQEIESLQIEIKNANAAIDKAIRDRRGISKDSPLLVDSNAAVAAAREALAAAELRLRSVYERKGDD*
Ga0157375_1180641723300013308Miscanthus RhizosphereMQDVQIEIELLHVEIQAANKTLEKALRDRKAANKDSPLVADLNLAVQAARQALNTVEVKLRALYESKDDG*
Ga0137405_134668233300015053Vadose Zone SoilMADIQAEIELLQIEIQKANAVISKAISNRRAIGKDSPLAVEANAAVAAAREALAAIEIKLRMLYESKPD*
Ga0132258_1011049953300015371Arabidopsis RhizosphereMNQQQEINTQQEIALLQVEIQNANAAIAKALRDRRGISKDSPLFADANATITTARENLAAVELRLRNAYERKGDD*
Ga0132258_1049256053300015371Arabidopsis RhizosphereMDDIEDEIESLQVEINKAREVLDKAVRDRRALHKESPLRDDCVAAVVAAREALAAVEIRLRTLYESKNRD*
Ga0132258_1186381133300015371Arabidopsis RhizosphereMADIQSEIELLQIEITKANAAIAKALRDRRAVNKDSPLIADLNAAVVAARQSLTDVEVKLRKLYESKSSDD*
Ga0132258_1259506113300015371Arabidopsis RhizosphereMADLQDEIELLQNEIQKANELIVKTVRERRAANKNSPLAAELNAAVAAARKALNDVEVKLRKLYVSKDD*
Ga0132258_1316114433300015371Arabidopsis RhizosphereMEDIQAEIELLQIEIKQAQAAITKALSDRKAINKDSPFVADLNAAVAAARESLAAVEIKLRKLYESKG
Ga0132258_1326939523300015371Arabidopsis RhizosphereMADVQDEIDLLHVEIEKANAVVAQALRDRRALNKDSPLVAECNAAVTAARQALIVVEIKLRALYESKDD*
Ga0132255_10494475123300015374Arabidopsis RhizosphereMGDIQSEIELLQIEITKANAAIAKALRDRRAVNKDSPLIADLNAAVVAARQSLTDVEVKLRKLYESKSSDD*
Ga0184638_101908413300018052Groundwater SedimentMADLQDEMSLVEQEIEQANAALAKAVRERRAAKGDGPLVAALEAAVVAARNALTDAEVKLRKLYESKDDGG
Ga0184628_1038283913300018083Groundwater SedimentQIALLQVEIEKANAAIAKAVRERRAINKDSPLIADFQAAVATAKQALHNAEVKLRALYESKED
Ga0184629_1068563113300018084Groundwater SedimentMGDVQDQIELLQIDIKNANDAVVKAVKQRREINKDSPLAADYGAAVTAAKKALVDAEVKLRALYESKED
Ga0066662_1105191423300018468Grasslands SoilMDDIQHEIELLQVEIKSANAIIEKAIRERRATAKDSPLIADLNAAVAAARAALAAVEIKLRALYERKSDD
Ga0210380_1005276733300021082Groundwater SedimentMDDVQDQIALLQVEIEKANAAIAKAVRERRAINKDSPLIADFQAAVATAKQALHNAEVKLRALYESKED
Ga0207687_1174466823300025927Miscanthus RhizosphereNAAIDKAIRNRRGISKDSPLLADSNATVVAARAALAAVELRLRNAYERKGDE
Ga0207700_1044462623300025928Corn, Switchgrass And Miscanthus RhizosphereMPDVQDEIEALQVEIEKANAVIAKALRERRALSKDSPLVADCNAAVAAARQALAVVEIKLRALYESKDD
Ga0207703_1231621623300026035Switchgrass RhizosphereMNDEQQEIELLQVEMRSASAAIDKAIRDRRGIAKDSPLLADVNAAVATARAALAAVELRLRNVYERKGDD
Ga0207639_1166799313300026041Corn RhizosphereTEIGKANAAIAKALRERRALNKDSPLVDDFNAAVVTARQALVSVEIKLRQLYESKGD
Ga0207641_1244926313300026088Switchgrass RhizosphereESLQIEIKNANAAIDKAIRDRRGISKDSPLLVDSNAAVAAAREALAAAELRLRSVYERKGDD
Ga0208185_103496913300027533SoilRTNRQRQGMADLQDEMSLVEQEIEQANAALAKAVRERRSAKGDSPLVAALEAAVVAARNALTDAEVKLRKLYESKDDGG
Ga0310813_1007617633300031716SoilMDDIQHEIELLQVEIASANAVIEKAIRERRATAKDSPLLADVNAAVVAARESLAAVEMKLRALYERKGDD
Ga0310813_1031702023300031716SoilMADIQAEIELLQIEIQKANGVISKAISDRRAIGKDSPLAAEANAAVAAAREALAAVEIKLRMLYESKPD
Ga0310813_1045622623300031716SoilMTDVQTEIGLLQIEIQKANDVIAKAINNRRAIGKESPLAADAQAAVVAARNALAAVEIKLRMLYESKPD
Ga0310813_1103758513300031716SoilMTNVQAEIELLQIEIQKANDVITKAISNRRAIGKDSPLAAEAQAAVVAARDALAAVEIKLRMLYESKPD
Ga0310813_1154373633300031716SoilMADIQAEIELLQIEIAKANAAIAKALRERRAANKDSPLVAELNAAVSAARQSLNLVE
Ga0308175_10328635623300031938SoilMGDVQDEIELLQTEIGKANAAIAKALRERRALNKDSPLVDDFNAAVVTARQALVSVEIKLRQLYESKGD
Ga0310810_1105149623300033412SoilCKRNSMDDIQHEIELLQVEIASANAVIEKAIRERRATAKDSPLLADVNAAVVAARESLAAVEMKLRALYERKGDD
Ga0364925_0274026_37_2463300034147SedimentMDDVQDQIALLQVEIEKANAAITKAVRERRAINKDSPLIADFQAAVATAKQALHNAEVKLRALYESKED
Ga0364925_0414109_139_3873300034147SedimentMRDPTTHKGNIMADVQDEIQLLQIDIEKANAAIAKALRDRRAINKDSPLVADFNAAVTAARQALASVEAKLRILYESKSGGD

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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