Metagenome / Metatranscriptome Family F090170

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F090170
Family Type	Metagenome / Metatranscriptome
Number of Sequences	108
Average Sequence Length	95 residues
Representative Sequence	MFLRWEILRGWMPAIVFAAIAVAIEVLYFNYMVSRGMMDEAFTISLGALKIPLSIALFFSLANAIVLLTLWMSVFENTAFVMAGPDRRVRRILYP
Number of Associated Samples	86
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Archaea
% of genes with valid RBS motifs	44.76 %
% of genes near scaffold ends (potentially truncated)	96.30 %
% of genes from short scaffolds (< 2000 bps)	77.78 %
Associated GOLD sequencing projects	72
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Archaea (93.519 % of family members)
NCBI Taxonomy ID	2157
Taxonomy	All Organisms → cellular organisms → Archaea

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (25.926 % of family members)
Environment Ontology (ENVO)	Unclassified (67.593 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (72.222 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 87.37% β-sheet: 0.00% Coil/Unstructured: 12.63%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF00004	AAA	12.04
PF05362	Lon_C	2.78
PF07088	GvpD_P-loop	1.85
PF00958	GMP_synt_C	0.93
PF00583	Acetyltransf_1	0.93
PF01171	ATP_bind_3	0.93
PF01921	tRNA-synt_1f	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG0466	ATP-dependent Lon protease, bacterial type	Posttranslational modification, protein turnover, chaperones [O]	2.78
COG1067	Predicted ATP-dependent protease	Posttranslational modification, protein turnover, chaperones [O]	2.78
COG1750	Predicted archaeal serine protease, S18 family	General function prediction only [R]	2.78
COG3480	Predicted secreted protein YlbL, contains PDZ domain	Signal transduction mechanisms [T]	2.78
COG0519	GMP synthase, PP-ATPase domain/subunit	Nucleotide transport and metabolism [F]	1.85
COG0037	tRNA(Ile)-lysidine synthase TilS/MesJ	Translation, ribosomal structure and biogenesis [J]	0.93
COG0301	Adenylyl- and sulfurtransferase ThiI (thiamine and tRNA 4-thiouridine biosynthesis)	Translation, ribosomal structure and biogenesis [J]	0.93
COG0482	tRNA U34 2-thiouridine synthase MnmA/TrmU, contains the PP-loop ATPase domain	Translation, ribosomal structure and biogenesis [J]	0.93
COG0603	7-cyano-7-deazaguanine synthase (queuosine biosynthesis)	Translation, ribosomal structure and biogenesis [J]	0.93
COG1384	Lysyl-tRNA synthetase, class I	Translation, ribosomal structure and biogenesis [J]	0.93
COG1606	ATP-utilizing enzyme, PP-loop superfamily	General function prediction only [R]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	97.22 %
Unclassified	root	N/A	2.78 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	97.22 %
Unclassified	root	N/A	2.78 %

Name	Rank	Taxonomy	Distribution
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	93.52 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	3.70 %
Unclassified	root	N/A	2.78 %

Name	Rank	Taxonomy	Distribution
TACK group	clade	All Organisms → cellular organisms → Archaea → TACK group	7.41 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2.78 %
Unclassified	root	N/A	2.78 %

Name	Rank	Taxonomy	Distribution
Candidatus Bathyarchaeota	phylum	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota	7.41 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2.78 %
Unclassified	root	N/A	2.78 %

Name	Rank	Taxonomy	Distribution
unclassified Candidatus Bathyarchaeota	no rank	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota	7.41 %
Unclassified	root	N/A	2.78 %
Negativicutes	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes	1.85 %
Bacilli	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	0.93 %

Name	Rank	Taxonomy	Distribution
Candidatus Bathyarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	7.41 %
Unclassified	root	N/A	2.78 %
Veillonellales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales	1.85 %
Bacillales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	0.93 %

Name	Rank	Taxonomy	Distribution
Candidatus Bathyarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	7.41 %
Unclassified	root	N/A	2.78 %
Veillonellaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae	1.85 %
Bacillaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae	0.93 %

Name	Rank	Taxonomy	Distribution
Candidatus Bathyarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	7.41 %
Unclassified	root	N/A	2.78 %
Veillonella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Veillonella	1.85 %
Geobacillus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Geobacillus	0.93 %

Name	Rank	Taxonomy	Distribution
Candidatus Bathyarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	7.41 %
Unclassified	root	N/A	2.78 %
Veillonella montpellierensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Veillonella → Veillonella montpellierensis	1.85 %
Geobacillus thermodenitrificans	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Geobacillus → Geobacillus thermodenitrificans	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002558\|JGI25385J37094_10067039	All Organisms → cellular organisms → Archaea	1156	Open in IMG/M
3300002558\|JGI25385J37094_10137517	All Organisms → cellular organisms → Archaea	669	Open in IMG/M
3300002560\|JGI25383J37093_10177793	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	560	Open in IMG/M
3300002561\|JGI25384J37096_10014369	All Organisms → cellular organisms → Archaea	3056	Open in IMG/M
3300002562\|JGI25382J37095_10105043	All Organisms → cellular organisms → Archaea	990	Open in IMG/M
3300002562\|JGI25382J37095_10211362	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	585	Open in IMG/M
3300002562\|JGI25382J37095_10258034	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Geobacillus → Geobacillus thermodenitrificans	525	Open in IMG/M
3300002911\|JGI25390J43892_10143603	All Organisms → cellular organisms → Archaea	554	Open in IMG/M
3300002912\|JGI25386J43895_10080898	All Organisms → cellular organisms → Archaea	869	Open in IMG/M
3300005171\|Ga0066677_10798258	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	522	Open in IMG/M
3300005178\|Ga0066688_10564685	All Organisms → cellular organisms → Archaea	731	Open in IMG/M
3300005178\|Ga0066688_10886105	All Organisms → cellular organisms → Archaea	551	Open in IMG/M
3300005187\|Ga0066675_11391384	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	515	Open in IMG/M
3300005451\|Ga0066681_10225586	All Organisms → cellular organisms → Archaea	1129	Open in IMG/M
3300005451\|Ga0066681_10344087	All Organisms → cellular organisms → Archaea	915	Open in IMG/M
3300005540\|Ga0066697_10273612	All Organisms → cellular organisms → Archaea	998	Open in IMG/M
3300005552\|Ga0066701_10384556	All Organisms → cellular organisms → Archaea	868	Open in IMG/M
3300005553\|Ga0066695_10858014	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Veillonella → Veillonella montpellierensis	520	Open in IMG/M
3300005574\|Ga0066694_10047201	All Organisms → cellular organisms → Archaea	1956	Open in IMG/M
3300005598\|Ga0066706_11394604	All Organisms → cellular organisms → Archaea	528	Open in IMG/M
3300006794\|Ga0066658_10032725	All Organisms → cellular organisms → Archaea	2124	Open in IMG/M
3300006796\|Ga0066665_11610232	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Veillonella → Veillonella montpellierensis	511	Open in IMG/M
3300006797\|Ga0066659_11266566	All Organisms → cellular organisms → Archaea	615	Open in IMG/M
3300006800\|Ga0066660_10086016	All Organisms → cellular organisms → Bacteria	2182	Open in IMG/M
3300006806\|Ga0079220_10037951	All Organisms → cellular organisms → Archaea	2189	Open in IMG/M
3300007258\|Ga0099793_10086882	All Organisms → cellular organisms → Archaea	1434	Open in IMG/M
3300009012\|Ga0066710_100839664	All Organisms → cellular organisms → Archaea	1410	Open in IMG/M
3300009038\|Ga0099829_10268346	All Organisms → cellular organisms → Archaea	1394	Open in IMG/M
3300009088\|Ga0099830_10043175	All Organisms → cellular organisms → Archaea	3139	Open in IMG/M
3300009088\|Ga0099830_10489311	All Organisms → cellular organisms → Archaea	1002	Open in IMG/M
3300010132\|Ga0127455_1057967	All Organisms → cellular organisms → Archaea	539	Open in IMG/M
3300010301\|Ga0134070_10010135	All Organisms → cellular organisms → Archaea	2960	Open in IMG/M
3300010303\|Ga0134082_10472700	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	544	Open in IMG/M
3300010303\|Ga0134082_10472702	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	544	Open in IMG/M
3300010303\|Ga0134082_10557602	All Organisms → cellular organisms → Archaea	505	Open in IMG/M
3300010304\|Ga0134088_10019806	All Organisms → cellular organisms → Archaea	2971	Open in IMG/M
3300010304\|Ga0134088_10057147	All Organisms → cellular organisms → Archaea	1798	Open in IMG/M
3300010304\|Ga0134088_10622042	All Organisms → cellular organisms → Archaea	538	Open in IMG/M
3300010320\|Ga0134109_10000950	All Organisms → cellular organisms → Archaea	6314	Open in IMG/M
3300010321\|Ga0134067_10303039	All Organisms → cellular organisms → Archaea	617	Open in IMG/M
3300010322\|Ga0134084_10147388	All Organisms → cellular organisms → Archaea	789	Open in IMG/M
3300010323\|Ga0134086_10103632	All Organisms → cellular organisms → Archaea	1008	Open in IMG/M
3300010335\|Ga0134063_10090965	All Organisms → cellular organisms → Archaea	1377	Open in IMG/M
3300010337\|Ga0134062_10316755	All Organisms → cellular organisms → Archaea	743	Open in IMG/M
3300011269\|Ga0137392_10220217	All Organisms → cellular organisms → Archaea	1557	Open in IMG/M
3300012198\|Ga0137364_11436685	All Organisms → cellular organisms → Archaea	510	Open in IMG/M
3300012199\|Ga0137383_10712628	All Organisms → cellular organisms → Archaea	733	Open in IMG/M
3300012199\|Ga0137383_10750159	All Organisms → cellular organisms → Archaea	713	Open in IMG/M
3300012201\|Ga0137365_10397910	All Organisms → cellular organisms → Archaea	1016	Open in IMG/M
3300012202\|Ga0137363_10486702	All Organisms → cellular organisms → Archaea	1035	Open in IMG/M
3300012202\|Ga0137363_10766327	All Organisms → cellular organisms → Archaea	818	Open in IMG/M
3300012206\|Ga0137380_10406724	All Organisms → cellular organisms → Archaea	1208	Open in IMG/M
3300012207\|Ga0137381_10118898	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	2255	Open in IMG/M
3300012349\|Ga0137387_10146395	All Organisms → cellular organisms → Archaea	1679	Open in IMG/M
3300012354\|Ga0137366_10376108	All Organisms → cellular organisms → Archaea	1037	Open in IMG/M
3300012356\|Ga0137371_11295965	All Organisms → cellular organisms → Archaea	539	Open in IMG/M
3300012357\|Ga0137384_10199344	All Organisms → cellular organisms → Archaea	1675	Open in IMG/M
3300012359\|Ga0137385_10198059	All Organisms → cellular organisms → Archaea	1754	Open in IMG/M
3300012359\|Ga0137385_10664421	All Organisms → cellular organisms → Archaea	872	Open in IMG/M
3300012409\|Ga0134045_1033382	All Organisms → cellular organisms → Archaea	744	Open in IMG/M
3300012918\|Ga0137396_11224539	All Organisms → cellular organisms → Archaea	527	Open in IMG/M
3300012927\|Ga0137416_11259263	All Organisms → cellular organisms → Archaea	667	Open in IMG/M
3300012972\|Ga0134077_10168533	All Organisms → cellular organisms → Archaea	880	Open in IMG/M
3300014154\|Ga0134075_10127042	All Organisms → cellular organisms → Archaea	1085	Open in IMG/M
3300014154\|Ga0134075_10321101	All Organisms → cellular organisms → Archaea	676	Open in IMG/M
3300015241\|Ga0137418_10022335	All Organisms → cellular organisms → Archaea	5856	Open in IMG/M
3300015358\|Ga0134089_10152028	All Organisms → cellular organisms → Archaea	914	Open in IMG/M
3300015358\|Ga0134089_10173956	All Organisms → cellular organisms → Archaea	858	Open in IMG/M
3300017656\|Ga0134112_10126145	All Organisms → cellular organisms → Archaea	974	Open in IMG/M
3300017659\|Ga0134083_10157947	All Organisms → cellular organisms → Archaea	921	Open in IMG/M
3300017659\|Ga0134083_10541568	All Organisms → cellular organisms → Archaea	526	Open in IMG/M
3300017659\|Ga0134083_10542411	All Organisms → cellular organisms → Archaea	525	Open in IMG/M
3300017934\|Ga0187803_10476757	All Organisms → cellular organisms → Archaea	509	Open in IMG/M
3300018433\|Ga0066667_10230610	All Organisms → cellular organisms → Archaea	1387	Open in IMG/M
3300018433\|Ga0066667_11396865	All Organisms → cellular organisms → Archaea	615	Open in IMG/M
3300018482\|Ga0066669_10001291	All Organisms → cellular organisms → Archaea	9415	Open in IMG/M
3300018482\|Ga0066669_12043489	All Organisms → cellular organisms → Archaea	538	Open in IMG/M
3300021046\|Ga0215015_10063662	All Organisms → cellular organisms → Archaea	745	Open in IMG/M
3300021171\|Ga0210405_10007941	All Organisms → cellular organisms → Archaea	9248	Open in IMG/M
3300025922\|Ga0207646_10588169	All Organisms → cellular organisms → Archaea	999	Open in IMG/M
3300026295\|Ga0209234_1073380	All Organisms → cellular organisms → Archaea	1301	Open in IMG/M
3300026296\|Ga0209235_1008555	All Organisms → cellular organisms → Archaea	5708	Open in IMG/M
3300026296\|Ga0209235_1024697	All Organisms → cellular organisms → Archaea	3173	Open in IMG/M
3300026297\|Ga0209237_1007165	All Organisms → cellular organisms → Archaea	6707	Open in IMG/M
3300026298\|Ga0209236_1031762	All Organisms → cellular organisms → Archaea	2812	Open in IMG/M
3300026298\|Ga0209236_1290019	All Organisms → cellular organisms → Archaea	529	Open in IMG/M
3300026313\|Ga0209761_1012753	All Organisms → cellular organisms → Archaea	5434	Open in IMG/M
3300026314\|Ga0209268_1181764	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	519	Open in IMG/M
3300026315\|Ga0209686_1075281	All Organisms → cellular organisms → Archaea	1197	Open in IMG/M
3300026323\|Ga0209472_1257721	All Organisms → cellular organisms → Archaea	557	Open in IMG/M
3300026324\|Ga0209470_1006018	All Organisms → cellular organisms → Archaea	7849	Open in IMG/M
3300026325\|Ga0209152_10103358	All Organisms → cellular organisms → Archaea	1075	Open in IMG/M
3300026330\|Ga0209473_1168156	All Organisms → cellular organisms → Archaea	870	Open in IMG/M
3300026331\|Ga0209267_1214458	All Organisms → cellular organisms → Archaea	723	Open in IMG/M
3300026332\|Ga0209803_1087811	All Organisms → cellular organisms → Archaea	1290	Open in IMG/M
3300026524\|Ga0209690_1016491	All Organisms → cellular organisms → Archaea	3812	Open in IMG/M
3300026532\|Ga0209160_1261655	All Organisms → cellular organisms → Archaea	588	Open in IMG/M
3300026547\|Ga0209156_10021569	All Organisms → cellular organisms → Archaea	3845	Open in IMG/M
3300026548\|Ga0209161_10334803	All Organisms → cellular organisms → Archaea	690	Open in IMG/M
3300027748\|Ga0209689_1159419	All Organisms → cellular organisms → Archaea	1064	Open in IMG/M
3300027748\|Ga0209689_1277603	All Organisms → cellular organisms → Archaea	661	Open in IMG/M
3300027862\|Ga0209701_10072355	All Organisms → cellular organisms → Archaea	2180	Open in IMG/M
3300027882\|Ga0209590_10099956	All Organisms → cellular organisms → Archaea	1731	Open in IMG/M
3300031962\|Ga0307479_12091106	All Organisms → cellular organisms → Archaea	514	Open in IMG/M
3300032205\|Ga0307472_100455229	All Organisms → cellular organisms → Archaea	1089	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	99.07%
Aquatic	Environmental → Aquatic	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	99.07%
Freshwater	Environmental → Aquatic → Freshwater	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	96.30%
Loam	Environmental → Terrestrial → Soil → Loam	2.78%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	47.22%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	45.37%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.78%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.85%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.93%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	25.93%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	24.07%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	22.22%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	19.44%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.85%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.85%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.93%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm	Environmental	Open in IMG/M
3300002560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm	Environmental	Open in IMG/M
3300002561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm	Environmental	Open in IMG/M
3300002562	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300002911	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm	Environmental	Open in IMG/M
3300002912	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005574	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300010132	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_16_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09082015	Environmental	Open in IMG/M
3300010303	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_11112015	Environmental	Open in IMG/M
3300010321	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015	Environmental	Open in IMG/M
3300010322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012409	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_16_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012972	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300014154	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015358	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300017656	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015	Environmental	Open in IMG/M
3300017659	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300017934	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_3	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300021046	Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026295	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026296	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026297	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026298	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026313	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026314	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143 (SPAdes)	Environmental	Open in IMG/M
3300026315	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126 (SPAdes)	Environmental	Open in IMG/M
3300026323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130 (SPAdes)	Environmental	Open in IMG/M
3300026324	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)	Environmental	Open in IMG/M
3300026325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)	Environmental	Open in IMG/M
3300026330	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133 (SPAdes)	Environmental	Open in IMG/M
3300026331	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137 (SPAdes)	Environmental	Open in IMG/M
3300026332	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138 (SPAdes)	Environmental	Open in IMG/M
3300026524	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150 (SPAdes)	Environmental	Open in IMG/M
3300026532	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153 (SPAdes)	Environmental	Open in IMG/M
3300026547	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)	Environmental	Open in IMG/M
3300026548	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)	Environmental	Open in IMG/M
3300027748	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25385J37094_100670391	3300002558	Grasslands Soil	MFQRWEILRGWIPGILFAAIAVAIEILYLEYMLARGLADETFSVSLGIASLPLSIALFLSLGNAIVLLVLWMSVFESTAYVMAGPDRRVRRLLYP
JGI25385J37094_101375171	3300002558	Grasslands Soil	VSAVASGTTTYKRMFLRWEILRGWMPAIVFAAIAVAVEMLYFDYMVSRGMMDEAFTISLGALKIPLSIALFFSLANAIVLLTLWMSVFENTAFVMA
JGI25383J37093_101777931	3300002560	Grasslands Soil	MPAIVFAAISVGIELLYFNSMVGRGMMDESFSIPLGALKIPLSIALFFSLANAIVLLTLWMSVFENTA
JGI25384J37096_100143693	3300002561	Grasslands Soil	MPAIVFAAIAAAIELLYFNYMVGRGMMDESFSIPLGALKIPLSIALFFSLANAIVLLTLWMSVFENTAFVMA
JGI25382J37095_101050432	3300002562	Grasslands Soil	MPAVVFAAIAVAIELLYFNYMVSRGMTDEAFSIPLGALKIPLSIALFFSLANAIVLLTLWMSVFENTAFVMAGPDRRVRRIL
JGI25382J37095_102113621	3300002562	Grasslands Soil	MPAIVFAAISVGIELLYFNYMVGRGMMDESFSIPLGALKIPLSIALFFSLANAIVLLTLWMSVFENTAFVMA
JGI25382J37095_102580341	3300002562	Grasslands Soil	MFLRWEILRGWMPAIVFAAIAVAIELLYFNYMVSRGMIDEAFTISLGALRIPLSIALFFSLANAVVLLTLWMSVFEN
JGI25390J43892_101436032	3300002911	Grasslands Soil	MFQRWEILRGWIPGILFAAIAVAIEILYLEYMLARGLADETFSVSLGIASLPLSIALFLSLGNAIVLLVLWMSVF
JGI25386J43895_100808981	3300002912	Grasslands Soil	VSAVASGTTTYKRMFLRWEILRGWIPAIVFAAIAVAIELLYFNYMVGRGMVDEAFTIPLGVLKIPLSIALFFSLANAIVLLTLWMSVFENTAFVMAG
Ga0066677_107982581	3300005171	Soil	MFLRWEILRGWIPAIVFAAIAVAVELLYFNYMVGRGMVDEAFTIPLGVLKIPLSIALFFSLANAIVLLTLWM
Ga0066688_105646851	3300005178	Soil	MASGTTTYKRMFLRWEILRGWMPAIVFAAISVAIELLYFDYMVGRGMLDEAFSIPIGAVKIPLSIALFFSLANAIVLLTLWMTVFENTAFVMAGPDRRVRRILYPLRMVKAAAIVLTPFTIVLFTPYI
Ga0066688_108861051	3300005178	Soil	VLAVASGTTTYKRMFLRWEILRGWMPAIVFAAIAVAIELLYFNYMVGRGMMDEAFNIPIGAVKIPLSIALFFSLANAIVLLTLWMSVFENTAFVMAGPDRRVRRILYPLRMVKAAAI
Ga0066675_113913841	3300005187	Soil	MFLRWEILRGWMPAILFAAIAVAIELLYFNYMVSRGMMDEAFNIPIGAAKIPLSIALFFSLANAIVLL
Ga0066689_106164402	3300005447	Soil	MPAIVFAAIAVAIELLYFNYMVGRGMMDEAFNIPIGAVKIPLSIALFFSLANAIV
Ga0066681_102255861	3300005451	Soil	VLAVASGTTTYKRMFLRWEILRGWMPAIVFAAISVAIELLYFDYMVGRGMLDEAFSIPIGAVKIPLSIALFFSLANAIVLLTLWMTVFENTAFVMAGPDRRV
Ga0066681_103440872	3300005451	Soil	VAEGTYKRMFLRWEIIRGWMPGIVFAAIAVAIEILYFEYMLSRGLADETFSVSLGIVSLPLSISLFLSLGNAIVLLVLWMSVFESTAYVMAGPDRRVRRLLYPLRMIRAAALVLAPFTLVLFAPYIIES
Ga0066697_102736121	3300005540	Soil	VLAVASGTPTYKRMFLRWEILRGWMPAIVFAAISVAIELLYFNYMVGRGMMDEAFSIPIGAVKIPLSIALFFSLANAIVLLTLWMTVFENTAFVMAGPDRRVRRIL
Ga0066701_103845561	3300005552	Soil	MPAIVFAAISVGIELLYFNYMVGRGMMDESFSIPLGALKIPLSIALFFSLANAIVLLTLWMSVFENTAFVMAGPDRRVRRILYPLRMVKAAAIVLTPFTIVLFTPYIVESSWFISAV
Ga0066695_108580141	3300005553	Soil	MPAIVFAAIAVAIEVLYFDYMVSRGMMDEAFTISLGALKIPLSIALFFSLANAIVLLTLWMSVFENTAFVMAGPDRRV
Ga0066694_100472011	3300005574	Soil	MPAILFAAIAVAIELLYFNYMVSRGMMDEAFNIPIGAAKIPLSIALFFSLANAIVLLTLWMTVFENTAFVMAGPDRRVRRILY
Ga0066706_113946041	3300005598	Soil	VLAVVSGTTTYKRMFLRWEILRGWMPAIVFAAISVAIELLYFDYMVGRGMLDEAFSIPIGAVKIPLSIALFFSLANAIVLLTLWMTVFENTAFVIAGPDRRVRRILYPLRMVKAAAIVLTPFTIVLF
Ga0066658_100327253	3300006794	Soil	VASGTTTYKRMFLRWEILRGWIPAIVFAAIAVAIELLYFNYMVGRGMVDEAFTIPLGVLKIPLSIALFFSLANAIVLLTLWMTVFENTAFVMAGPDRRVRRILYPL
Ga0066665_116102321	3300006796	Soil	MPAIVFAAIAVAIEVLYFNYMVSRGMMDEAFTISLGALKIPLSIALFFSLANAIVLLTLWMSVFENTAFVMAGPDRRVRRILYPLRMVKAAAIVLTPFTIVLFTPYI
Ga0066659_112665662	3300006797	Soil	MPAIVFAAIAVAVELLYFDYMVSRGMMDETFTISLGALKIPLSIALFFSLANAIVLLTLWMSVFENTAFVMAGPDRRVRRILYPLRMVKAAAIVLTPFTIVLFTPYIVESSWFVS
Ga0066660_100860163	3300006800	Soil	MPAIVFAAIAVAVELLYFDYMVSRGMMDETFTISLGALKIPLSIALFFSLANAIVLLTLWMSVFENTAFVMAGPDRRVRR
Ga0079220_100379513	3300006806	Agricultural Soil	MAVASGTTTYKRMFLRWEILRGWLPAIVFAAISVAIELLYFTYMVDRGMMDETFTISLGALKIPLSIALFFSLANAIVLLTLWMSVFENTAFVMAGPDRRVRRILYPLRMVKAAAIVL
Ga0099793_100868822	3300007258	Vadose Zone Soil	MFLRWEILRGWMPAIVFAAIAIAIELLYFNYMVSRGMIDEAFTISLGALGIPLSIALFFSLANAIVLLTLWMSLFENTAFVIAGPDRRVRRILYPLRMVKAAA
Ga0066710_1008396641	3300009012	Grasslands Soil	MFLRWEILRGWMPAILFAAIAVAIELLYFNYMVSRGMMDEAFNIPIGAAKIPLSIALFFSLANAIVLLTLWMTVFENTAFVMAGPDRRVRRILYPLRMVKAAAIVL
Ga0099829_102683461	3300009038	Vadose Zone Soil	MPAIAFAAIAVAIELLYFNYMVSRGMVDEAFTISLGALRIPLSIALFFSLANAVVLLTLWMSVFENTAFVM
Ga0099830_100431753	3300009088	Vadose Zone Soil	MFLRWEILRGWMPAIVFAAIAVGIELLYFNYMVGRGMMDEAFTISLGALRIPLSIALFFSLANAVLLLTLWMSVFEN
Ga0099830_104893111	3300009088	Vadose Zone Soil	MFLRWEILRGWMPAIVFAAIAVAIELLYFNYMVSRGMVDEAFTISLGALRIPLSIALFFSLANAVVLLTLWMSVFENTAFVMAGPDRRVR
Ga0127455_10579671	3300010132	Grasslands Soil	MFLRWEIIRGWMPGIVFAAIAVAIEILYFEYMLSRGLADETFSVSLGIVSLPLSIALFLSLGNAIVLLVLWMSVFESTAYVMAGPDRRVRRLLYPLRMIRAAALVLAPFTLVL
Ga0134070_100101353	3300010301	Grasslands Soil	MFLRWEILRGWMPAIVFAAIAVAIEVLYFNYMVSRGMMDEAFTISLGALKIPLSIALFFSLANAIVLLTLWMSVFENTAFVMAGPDRRARRILYPLRMVKAAAV
Ga0134082_104727001	3300010303	Grasslands Soil	MFLRWEILRGWMPAIVFAAISVAIELLYFDYMVGRGMLDEAFSIPIGAVKIPLSIALFFSLANAIVLLTLWMTVFENT
Ga0134082_104727021	3300010303	Grasslands Soil	MFLRWEILRGWMPAILFAAIAVAIELLYFNYMVGRGMMDEAFSIPIGAVKIPLSIALFFSLANAIVLLTLWMTVFENT
Ga0134082_105576021	3300010303	Grasslands Soil	MFQRWEIIRGWMPGIVFAGIAVAIEILYFEYMLGRGLADETFSVSLGIISLPLSIALFLSLGNAIVLLVLWMNVFESTAYVMAGPDRRVRRLLYPLRMIRAAALVLAPFTIVLF
Ga0134088_100198061	3300010304	Grasslands Soil	MFLRWEILRGWMPAIVFAAISVAIEWLYFNYMVSRGMMDEAFTISLGALRIPLSIALLFSLANAVVLLSLWMSVFENTAFVMAGPDRRVRRILYPLRMVKAAAIVLTPFTIVLFTPYIVE
Ga0134088_100571473	3300010304	Grasslands Soil	MFLRWEILRGWMPAIVFAAIAVAIEVLYFNYMVSRGMMDEAFTISLGALKIPLSIALFFSLANAIVLLTLWMSVFENTAFVMAGPDRRVRRILYPLRMVKSAAIVITPF
Ga0134088_106220421	3300010304	Grasslands Soil	VFAVASGTTTYKRMFLRWEILRGWMPAIVFAAISVGIELLYFNYMVGRGMMDESFSIPLGALKIPLSIALFFSLANAIVLLTLWMSVFENTAFVMAGPDRRVRRILYPLRMV
Ga0134109_100009501	3300010320	Grasslands Soil	MFLRWEILRGWMPAILFAAIAVAIELLYFNYMVSRGMMDEAFNIPIGAAKIPLSIALFFSLANAIVLLTLWMTVFENTAFVMAGP
Ga0134067_103030392	3300010321	Grasslands Soil	MFLRWEILRGWMPAIVFAAISVAIELLYFNYMVGRGMMDEAFSIPIGAVKIPLSIALFFSLANAIVLLTLWMTVFENTAF
Ga0134084_101473882	3300010322	Grasslands Soil	MFLRWEILRGWMPAIVFAAISVAIELLYFNYMVGRGMMDEAFSIPIGAVKIPLSIALFFSLANAIVLL
Ga0134086_101036322	3300010323	Grasslands Soil	MFLRWEILRGWMPAIVFAVIAVAIEVLYFNYMVSRGMMDEAFTISLGALKIPLSIALFFSLANAIVLLTLWMSVFENTAFVMAGPDRRVRRILYPLRMVKSAAIVITPLTIVLFTPYIV
Ga0134063_100909651	3300010335	Grasslands Soil	MFLRWEIIRGWMPGIVFAAIAVAIEILYFEYMLSRGLVDETFSVSLGIVSLPLSISLFLSLGNAIVLLVLWMSVFESTAYVMAGPDRRVRRLLYPLRMI
Ga0134062_103167552	3300010337	Grasslands Soil	MFLRWEILRGWMPAIVFAAISVAIELLYFDYMVGRGMLDEAFSIPIGAVKIPLSIALFFSLANAIVLLTLWMTVFENTAFVMAGPDRRVR
Ga0137392_102202173	3300011269	Vadose Zone Soil	MFLRWGILRGWMPAIVFAAVAVAIELLYFSYMVGRGMMDEAFTISLGALRVPLSIALFFSLAKAVVLLTLWMSVFENTALVMAGPDR
Ga0137364_114366851	3300012198	Vadose Zone Soil	MFLRWEILRGWMPAIVFAAIAVAIEVLYFDYMVSRGMTDEAFTISLGALKIPLSIALFFSLANAIVLLTLWMSVFENTAFVMAGPD
Ga0137383_107126282	3300012199	Vadose Zone Soil	MFQRWEILRGWIPGIVFAAIAVAIEILYLEYMLARGLADETFSVSLGIASLPLSIALFLSLGNAIVLLVLWMSVFESTAYVMSGPDRRVRRLLYPLRMIR
Ga0137383_107501592	3300012199	Vadose Zone Soil	MASGTTTYKRMFLRWEILRGWMPAIVFAAIAVAIEVLYFNYMVSRGMMDEAFTISLGALKIPLSIALFFSLANAIVLLTLWMSVFENTAFVMAGPDRRVRRILYPLRMVKAAAIVLTPFT
Ga0137365_103979101	3300012201	Vadose Zone Soil	MFLRWEVLRGWMPAIVFAAIAVAIEVLYFNYMVSRGMMDEAFTISLGALKIPLSIALFFSLANAIVLLTLWMSVFENTAFVMAGPDRRVRRILYP
Ga0137363_104867021	3300012202	Vadose Zone Soil	MFLRWEILRGWMPAIVFAAIAVAIELLYFNYMVSRGMIDEAFTISLGALRIPLSIALFFSLANAVVLLTLWMSVFENTAFVMAGPDRRVRRILYPLRM
Ga0137363_107663271	3300012202	Vadose Zone Soil	MFLRWEILRGWMPAIVFAAIAIAIELLYFNYMVSRGMIDEAFTISLGALGIPLSIALFFSLANAIVLLTLWMSLFENTAFVMAG
Ga0137380_104067242	3300012206	Vadose Zone Soil	MPAIVFAAIAVAVEILYFDYMVSRGMMDEAFTISLGALKIPLSIALFFSLANAIVLLTLWMSVFENTAFVMAGPDRRVRRILYPLRMVKAAAVVLT
Ga0137381_101188981	3300012207	Vadose Zone Soil	MFLRWEILRGWMPAIVFAAISVAIELLYFDYMVGRGMLDEAFGIPIGAVKIPLSIALFFSLANAIVLLTLWMTVFENTAFVM
Ga0137377_115549391	3300012211	Vadose Zone Soil	MFLRWEILRGWMPAIVFAAIAVAIEVLYLNYMVSRGMMDEAFTISLGALKIPLSIALFFSLANAIVL
Ga0137387_101463951	3300012349	Vadose Zone Soil	MFLRWEILRGWMPAIVFASISVAIELLYFDYMVGRGMLDEAFSIPIGAVKIPLSIALFFSLANAIVLLTLWMTVF
Ga0137366_103761081	3300012354	Vadose Zone Soil	MFLRWEILRGWMPAIVFAAIAVAIEVLYFNYMVSRGMMDEAFTISLGALKIPLSIALFFSLANAIVLLTLWMSVFENTAFVMAGPDRRVRRILYP
Ga0137371_112959651	3300012356	Vadose Zone Soil	MASGTTTYKRMFLRWEILRGWMPAIVFAAIAVAIEVLYFNYMVSRGMMDEAFTISLGALKIPLSIALFFSLANAIVLLTLWMSVFENTAFVMAGPDRRVRRI
Ga0137384_101993441	3300012357	Vadose Zone Soil	MPAIVFAAIAVAVEILYFDYMVTRGMMDEAFTISLGALKIPLSIALFFSLANAIVLLTLWMSVFENTAFVMAGPDRRVRRILYP
Ga0137368_106995581	3300012358	Vadose Zone Soil	MFQRWEIIRGWMPGIVFAAIAVAIEILYFEYMLSRGLADETFSVSLGIVSLPLSISLFLSLGNAIVLLVLWMSVFESTAYVMARPDRRVRRLLYPLRMIRAAALVLAPSTLVLFAPYIIDSGWFISIV
Ga0137385_101980591	3300012359	Vadose Zone Soil	MFHRWEILRGWTPAIAFAAIAVAIELLFFEYMISRGLANTSFDISLGIVRIPLSIALFLSLGNAVVLLMLWMSVFENTAFVMASPDK
Ga0137385_106644212	3300012359	Vadose Zone Soil	MFLRWEILRGWMPAIVFASISVAIELLYFDYMVGRGMLDEAFSIPIGAVKIPLSIALFFSLANAIVLLTLWMTVFENTAFV
Ga0134045_10333821	3300012409	Grasslands Soil	MFLRWEILRGWMPAIVFAAIAVAIEVLYFNYMVSRGMMDEAFTISLGALKIPLSIALFFSLANAIVLLTLWMSVFENTAFVMAGPDRRVRRILYPLRMVKAAVIVLTPFTIVLFTPYIVE
Ga0137396_112245391	3300012918	Vadose Zone Soil	MAVASASTTYKRTFLRWEILRGWMPAIVFASIAVAIELLYFNYMVGRVMMDASFTVSLGALKVPLSVALFFSLANAVVLLTLWMSVFENTAFVMAGPDRRVRRILYPLRMIKAA
Ga0137416_112592631	3300012927	Vadose Zone Soil	MFLRWEILRGWTPAIVFAAIAVAIELLYFNYMISRGMIDEAFTISLGALRIPLSITLFFSLANAVVLLTLWMSLFENTAFVMAGPDRRVRRILYPLRMVKA
Ga0134077_101685331	3300012972	Grasslands Soil	VFAVASGTTTYKRMFLRWEILRGWMPAIVFAAISVGIELLYFNYMVGRGMMDESFSIPLGALKIPLSIALFFSLANAIVLLTLWMSVFENTAFVMAG
Ga0134075_101270421	3300014154	Grasslands Soil	MFLRWEIIRGWMPGIVFAAIAVAIEILYFEYMLSRGLADETFSVSLGIVSLPLSISLFLSLGNAIVLLVLWMSVFESTAYVMAGPDRRVRRLLYPLRMIRAAA
Ga0134075_103211011	3300014154	Grasslands Soil	MFLGWEILRGWMPAIVFAAIAVAIELLYFNYMVSRGMMDEAFTISLGALRIPLSIALLFSLANAVVLLTLWMSVFENTAFVMAGPDRRVRRIL
Ga0137418_100223351	3300015241	Vadose Zone Soil	MFLRWEILRGWTPAIVFAAIAVAIELLYFNYMISRGMIDEAFTIFLGALRIPLSITLFFSLAN
Ga0134089_101520281	3300015358	Grasslands Soil	VFAVASGTTTYKRMFLRWEILRGWMPAIVFAAISVGIELLYFNYMVGRGMMDESFSIPLGALKIPLSIALFFSLANAIVLLTLWMS
Ga0134089_101739562	3300015358	Grasslands Soil	MFLRWEILRGWMPAIVFAAIAAAIELLYFNYMVGRGMMDESFSIPLGALKIPLSIALFFSLANAIVLLTLWMSVFENTAFVMAGPDRRVRRLLYPLRMVKAAAIV
Ga0134112_101261452	3300017656	Grasslands Soil	MPAIVFAAISVAIEWLYFNYMVSRGMMDEAFTISLGALRIPLSIALLFSLANAVVLLSLWMSVFENTAFVMAG
Ga0134083_101579472	3300017659	Grasslands Soil	MPAIVFAAISVGIELLYFNYMVGRGMMDESFSIPLGALKIPLSIALFFSLANAIVLLTLWMSVFENTAFVMAG
Ga0134083_105415681	3300017659	Grasslands Soil	MFQRWEILRGWIPGILFAAIAVAIEILYLEYMLARGLADETFSVSLGIASLPLSIALFLSLGNAIVLLVLWMSVFESTAYVMAGPDRRVRRLLYPLRMIRAAALVLAPFTL
Ga0134083_105424111	3300017659	Grasslands Soil	MFQRWEIIRGWMPGIVFAGIAVAIEILYFEYMLGRGLADETFSVSLGIISLPHSIALFLSLGNAIVLLVLWMNVFESTAYVMAGPDRRVRRLLYPLRMIRAAALVLAPFTIVLFSP
Ga0187803_104767571	3300017934	Freshwater Sediment	LPAILFTAIAILIELLYLNLIIGRGLADISYSIPLGVINIPLSISLFLSLGNAIVLLVLWMSVFENTAFVMAGPDRKVRRILYPLRMIRAAALVLAPFTIVL
Ga0066667_102306101	3300018433	Grasslands Soil	MFLRWEILRGWMPAILFAAIAVAIELLYFNYMVSRGMMDEAFNIPIGAAKIPLSIALFFSLANAIVLLTLWMTVFENTAFVMAGPDRRVRRILYP
Ga0066667_113968651	3300018433	Grasslands Soil	MFLRWEILRGWIPAIVFAAIAVAVELLYFNYMVGRGMVDEAFTIPLGVLKIPLSIALFFSLANAIVLLTLWMSVFENTAFVMAGPDRRVRRILYPLRMVKAA
Ga0066669_100012911	3300018482	Grasslands Soil	MPAILFAAIAVAIELLYFNYMVSRGMMDEAFNIPIGAAKIPLSIALFFSLANAIVLLTLWMTVFENTAFVMAGPDRRVRRILYPLRMVKAAAIVL
Ga0066669_120434891	3300018482	Grasslands Soil	VLAVASGTPTYKRMFLRWEILRGWMPAIVFAAISVAIELLYFDYMVGRGMLDEAFSIPIGAVKIPLSIALFFSLANAIVLLTLWMTVFENTAFVMAGPDRRVRRILYPLRMVKAAAIVL
Ga0215015_100636621	3300021046	Soil	LPAIVFAAIAVAIELLYFNYMVGRGMMDEAFTISLGALRIPLSIALFFSLANAVVLLTLWMSVFENTAFVIAGPDRCLLYTSPSPRD
Ga0210405_100079411	3300021171	Soil	MPAIVFAAVAVAIELLYFNYMVSRGLIDEAFTISLGALRIPLSIALFVSLANAVVLLTLWMSVFENTAFVMAGPDRRVR
Ga0207646_105881691	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MPAIVFAAIAVAIELLYFNYMISRGMMDEAFTLSLGALRIPLSIALFFSLANAVVLLTLWMSVFENTAFVMAGPDRRVRRILYPLRMVKAAAIVLTPFTIVLFTPYIV
Ga0209234_10733802	3300026295	Grasslands Soil	MPAIVFAAIAVAIEVLYFNYMVSRGMMDEAFTISLGALKIPLSIALFFSLANAIVLLTLWMSVFENTAFVMA
Ga0209235_10085554	3300026296	Grasslands Soil	VASGTTTYKRMFLRWEIVRGWMPAIVFAAIAVAIEVLYFNYMVSRGMMDEAFTISLGALKIPLSIALFFSLANAIVLLTLWMSVFENTAFVMAGPDRRVRRILYPLRMVKAAAIVL
Ga0209235_10246973	3300026296	Grasslands Soil	MPAIVFAAIAVGIELLYFDYMVSRGMMDEAFTIPLGALKIPLSIALFFSLANAIVLLTLWMNVFENTAYVMAGPDRRVRRILYPLRMVKAAAIVLTPFTIV
Ga0209237_10071651	3300026297	Grasslands Soil	MPAIVFAAIAVAVEMLYFDYMVSRGMMDEAFTISLGALKIPLSIALFFSLANAIVLLTLWMSVFENTAFVMAGPDRRVRRILYPLRLVKAAAVVLTP
Ga0209236_10317623	3300026298	Grasslands Soil	MFQRWEILRGWIPGILFAAIAVAIEILYLEYMLARGLADETFSVSLGIASLPLSIALFLSLGNAIVLLVLWMSVFESTAYVMAGPDRRVRRLLY
Ga0209236_12900191	3300026298	Grasslands Soil	LTVASGTNTYKRMFLRWEILRGWMPAIVFAAIAVAIELLYFNYMVSRGMMDEAFTISLGALRIPLSIALFFSLANAVVLLTLWMSVFENTAFVMAGPDRRVRRILYPLRMVKAAAIV
Ga0209761_10127534	3300026313	Grasslands Soil	MPAIVFAAISVGIELLYFNYMVGRGMMDESFSIPLGALKIPLSIALFFSLANAIVLLTLWMSVFENTAFVMAGPDRRVRRILYPLRMVKAAAIV
Ga0209268_11817641	3300026314	Soil	MFLRWEILRGWMPAILFAAIAVAIELLYFNYMVSRGMMDEAFNIPIGAAKIPLSIALFFSLANAIVLLTLWMTVF
Ga0209686_10752812	3300026315	Soil	VASGTPTYKRMFLRWEILRGWMPAIVFAAISVAIELLYFDYMVGRGMLDEAFSIPIGAVKIPLSIALFFSLANAIVLLTLWMTVFENTAFVM
Ga0209472_12577211	3300026323	Soil	MFLRWEIIRGWMPGIVFAAIAVAIEILYFEYMLSRGLVDETFSVSLGIVSLPLSISLFLSLGNAIVLLVLWMSVFESTAYVMAGPDRRVRRLLYPLRVI
Ga0209470_10060187	3300026324	Soil	MPAIVFAAIAVAIEVLYFNYMVSRGMMDEAFTISLGALKIPLSIALFFSLANAIVLLTLWMSVFENTAFVMAG
Ga0209152_101033582	3300026325	Soil	VSAVASGTTTYKRMFLRWEILRGWIPAIVFAAIAVAIELLYFNYMVGRGMVDEAFTIPLGVLKIPLSIALFFSLANAIVLLTLWVSVFE
Ga0209473_11681561	3300026330	Soil	VASGTTTYKRMFLRWEILRGWMPAIVFAAIAVAIEVLYFNYMVSRGMMDEAFTISLGALKIPLSIALFFSLANAIVLLTLWMSVFENTAFVMAGPDRRVRRILYPLRMVKSAAIVITPFTIVLFT
Ga0209267_12144582	3300026331	Soil	MPAIVFAAIAVAIEVLYFNYMVSRGMMDEAFTISLGALKIPLSIALFFSLANAIVLLTLWMSVFENTAFVMAGPDRRVRRILYPLRMVKAAAIVLTPFTIVLFTPYIVESSW
Ga0209803_10878112	3300026332	Soil	MPAIVFAAIAVAIEVLYFNYMVSRGMMDEAFTISLGALKIPLSIALFFSLANAIVLLTLWMSVFENTAFVMAGPDRRVRRILYPLRMVKAAAIVLTPFTIVLFTPYIVES
Ga0209690_10164913	3300026524	Soil	MPAIVFAAIAVAVEMLYFDYMVSRGMMDEAFTISLGALKIPLSIALFFSLANAIVLLTLWMSVFENTAFVMAGPDRRVRRILYPLRLVKAAAVVLTPFTIVLFTPYIVESSWFISAV
Ga0209160_12616551	3300026532	Soil	MPAIVFAAIAAAIELLYFNYMVGRGMMDESFSIPLGALKIPLSIALFFSLANAIVLLTLWMSVFENTAFVMAGPDRRVRRLLYP
Ga0209156_100215693	3300026547	Soil	MPAIVFAAIAVAIELLYFNYMVGRGMMDEAFNIPIGAVKIPLSIALFFSLANAIVLLTLWMSVFENTAFVM
Ga0209161_103348031	3300026548	Soil	VLAVVSGTTTYKRMFLRWEILRGWMPAIVFAAISVAIELLYFDYMVGRGMLDEAFSIPIGAVKIPLSIALFFSLANAIVLLTLWMTVFENTAFVIAGPDRRVRRILYPLRMVKAAAIVLT
Ga0209689_11594191	3300027748	Soil	MPAIVFAMISVAIELLYFDYMVGRGMLDEAFSIPIGGVKIPLSIALFFSLANAIVLLTLWMTVFENTAFVMAGPDRRVRRILYPLRMVKAAAIVLTPFTI
Ga0209689_12776031	3300027748	Soil	VLAVASGTTTYKRMFLRWEILRGWMPAIVFAAIAVAIELLYFNYMVGRGMMDEAFNIPIGAVKIPLSIALFFSLANAIVLLTLWMSVFENTAFVMAGPDRRVRRILYPLRMVKAA
Ga0209701_100723553	3300027862	Vadose Zone Soil	MPAIVFAAIAVGIELLYFNYMVGRGMMDEAFTISLGALRIPLSIALFFSLANAVLLLTLWMSV
Ga0209590_100999561	3300027882	Vadose Zone Soil	LAMASGTTTYKRMFLRWEILRGWMPAIVFAAIAVGIELLYFNYMVGRGMMDEAFTISLGALRIPLSIALFFSLANAVVLLTLWMSVFENTAFVMAGPDRRVRRILYPLRMVKA
Ga0307479_120911061	3300031962	Hardwood Forest Soil	MFHRWEILRGWIPGIVFAAIAAGIEILYFNYMIARGLADTTYNISIGIGQLPLSISFFLALGNAIVLLTLWMSVFENTAFVMAGPDRKVRRILFPLRMIRAAALVL
Ga0307472_1004552291	3300032205	Hardwood Forest Soil	MAVASGTTTYKRMFLRWEILRGWLPAIVFAAISVAIELLYFTYMVGRGMIDEAFTISLGALKIPLSIALFFSLANAIVLLTLWMSVFENTAFVMAGPDRRVRRILYPLRMVKAA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F090170

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences