Metagenome / Metatranscriptome Family F090318

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F090318
Family Type	Metagenome / Metatranscriptome
Number of Sequences	108
Average Sequence Length	55 residues
Representative Sequence	VLTCVPEPGGEAMEAAVARARGRHARLLKSAGQAMVGDSQLAMQDLVNRGEG
Number of Associated Samples	87
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	12.96 %
% of genes near scaffold ends (potentially truncated)	79.63 %
% of genes from short scaffolds (< 2000 bps)	88.89 %
Associated GOLD sequencing projects	80
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.53

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (65.741 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa (25.926 % of family members)
Environment Ontology (ENVO)	Unclassified (29.630 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (45.370 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 51.25% β-sheet: 0.00% Coil/Unstructured: 48.75%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.53
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.53
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF11843	DUF3363	4.63
PF05015	HigB-like_toxin	1.85
PF08401	ArdcN	1.85
PF13424	TPR_12	1.85
PF00436	SSB	0.93
PF08843	AbiEii	0.93
PF13338	AbiEi_4	0.93
PF04471	Mrr_cat	0.93
PF00196	GerE	0.93
PF01609	DDE_Tnp_1	0.93
PF00083	Sugar_tr	0.93
PF04389	Peptidase_M28	0.93
PF00015	MCPsignal	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG0840	Methyl-accepting chemotaxis protein (MCP)	Signal transduction mechanisms [T]	1.85
COG3549	Plasmid maintenance system killer protein	Defense mechanisms [V]	1.85
COG4227	Antirestriction protein ArdC	Replication, recombination and repair [L]	1.85
COG0629	Single-stranded DNA-binding protein	Replication, recombination and repair [L]	0.93
COG2253	Predicted nucleotidyltransferase component of viral defense system	Defense mechanisms [V]	0.93
COG2965	Primosomal replication protein N	Replication, recombination and repair [L]	0.93
COG3039	Transposase and inactivated derivatives, IS5 family	Mobilome: prophages, transposons [X]	0.93
COG3293	Transposase	Mobilome: prophages, transposons [X]	0.93
COG3385	IS4 transposase InsG	Mobilome: prophages, transposons [X]	0.93
COG5421	Transposase	Mobilome: prophages, transposons [X]	0.93
COG5433	Predicted transposase YbfD/YdcC associated with H repeats	Mobilome: prophages, transposons [X]	0.93
COG5659	SRSO17 transposase	Mobilome: prophages, transposons [X]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	65.74 %
Unclassified	root	N/A	34.26 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	65.74 %
Unclassified	root	N/A	34.26 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	65.74 %
Unclassified	root	N/A	34.26 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	47.22 %
Unclassified	root	N/A	34.26 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.85 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.93 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	38.89 %
Unclassified	root	N/A	34.26 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	6.48 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.93 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.93 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	38.89 %
Unclassified	root	N/A	34.26 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	6.48 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.93 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.93 %
unclassified Planctomycetota	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota	0.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	38.89 %
Unclassified	root	N/A	34.26 %
unclassified Bryobacterales	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales	2.78 %
Bryobacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae	2.78 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.93 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.93 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.93 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	0.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	38.89 %
Unclassified	root	N/A	34.26 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	2.78 %
Bryobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter	1.85 %
unclassified Bryobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae	0.93 %
Candidatus Sulfopaludibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter	0.93 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	0.93 %
unclassified Rhizobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → unclassified Rhizobiaceae	0.93 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	38.89 %
Unclassified	root	N/A	34.26 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	2.78 %
Bryobacter aggregatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter → Bryobacter aggregatus	1.85 %
Rhizobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → unclassified Rhizobiaceae → Rhizobiaceae bacterium	0.93 %
unclassified Candidatus Sulfopaludibacter	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter	0.93 %
Bryobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium	0.93 %
Myxococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae	0.93 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	38.89 %
Unclassified	root	N/A	34.26 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	2.78 %
Bryobacter aggregatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter → Bryobacter aggregatus	1.85 %
Candidatus Sulfopaludibacter sp. SbA4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	0.93 %
Corallococcus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Corallococcus	0.93 %
Rhizobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → unclassified Rhizobiaceae → Rhizobiaceae bacterium	0.93 %
Bryobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium	0.93 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	38.89 %
Unclassified	root	N/A	34.26 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	2.78 %
Bryobacter aggregatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter → Bryobacter aggregatus	1.85 %
unclassified Corallococcus	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Corallococcus → unclassified Corallococcus	0.93 %
Candidatus Sulfopaludibacter sp. SbA4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	0.93 %
Rhizobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → unclassified Rhizobiaceae → Rhizobiaceae bacterium	0.93 %
Bryobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium	0.93 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	38.89 %
Unclassified	root	N/A	34.26 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	2.78 %
Bryobacter aggregatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter → Bryobacter aggregatus	1.85 %
Corallococcus sp. CA054B	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Corallococcus → unclassified Corallococcus → Corallococcus sp. CA054B	0.93 %
Candidatus Sulfopaludibacter sp. SbA4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	0.93 %
Rhizobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → unclassified Rhizobiaceae → Rhizobiaceae bacterium	0.93 %
Bryobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium	0.93 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004082\|Ga0062384_100426232	Not Available	861	Open in IMG/M
3300004082\|Ga0062384_100820531	All Organisms → cellular organisms → Bacteria	651	Open in IMG/M
3300004092\|Ga0062389_100780824	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1134	Open in IMG/M
3300004092\|Ga0062389_103189034	All Organisms → cellular organisms → Bacteria	614	Open in IMG/M
3300004635\|Ga0062388_100556903	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1040	Open in IMG/M
3300005602\|Ga0070762_10305232	All Organisms → cellular organisms → Bacteria	1004	Open in IMG/M
3300005921\|Ga0070766_10408944	All Organisms → cellular organisms → Bacteria	890	Open in IMG/M
3300005944\|Ga0066788_10053274	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter → Bryobacter aggregatus	956	Open in IMG/M
3300005993\|Ga0080027_10016510	All Organisms → cellular organisms → Bacteria	2627	Open in IMG/M
3300006638\|Ga0075522_10076677	All Organisms → cellular organisms → Bacteria	1858	Open in IMG/M
3300006893\|Ga0073928_10631594	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter → Bryobacter aggregatus	753	Open in IMG/M
3300009635\|Ga0116117_1118488	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	669	Open in IMG/M
3300009639\|Ga0116122_1071370	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1149	Open in IMG/M
3300009641\|Ga0116120_1294953	Not Available	502	Open in IMG/M
3300009650\|Ga0105857_1039780	Not Available	1235	Open in IMG/M
3300010880\|Ga0126350_11419991	Not Available	521	Open in IMG/M
3300012211\|Ga0137377_11454149	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	612	Open in IMG/M
3300012355\|Ga0137369_10239653	All Organisms → cellular organisms → Bacteria	1378	Open in IMG/M
3300014161\|Ga0181529_10498631	Not Available	645	Open in IMG/M
3300014161\|Ga0181529_10704759	Not Available	521	Open in IMG/M
3300014169\|Ga0181531_10295016	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	992	Open in IMG/M
3300014169\|Ga0181531_10424671	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	818	Open in IMG/M
3300014489\|Ga0182018_10618285	Not Available	568	Open in IMG/M
3300014490\|Ga0182010_10840417	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	522	Open in IMG/M
3300014495\|Ga0182015_10250406	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1170	Open in IMG/M
3300014499\|Ga0182012_10419335	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	880	Open in IMG/M
3300014501\|Ga0182024_10570851	Not Available	1423	Open in IMG/M
3300014501\|Ga0182024_12559502	Not Available	549	Open in IMG/M
3300014654\|Ga0181525_10032764	All Organisms → cellular organisms → Bacteria	3084	Open in IMG/M
3300014654\|Ga0181525_10214847	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1049	Open in IMG/M
3300014654\|Ga0181525_10231610	Not Available	1008	Open in IMG/M
3300014658\|Ga0181519_10704203	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	623	Open in IMG/M
3300017929\|Ga0187849_1167048	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	877	Open in IMG/M
3300017935\|Ga0187848_10031049	All Organisms → cellular organisms → Bacteria → Acidobacteria	2697	Open in IMG/M
3300018009\|Ga0187884_10000577	All Organisms → cellular organisms → Bacteria	36262	Open in IMG/M
3300018016\|Ga0187880_1131566	Not Available	1195	Open in IMG/M
3300018034\|Ga0187863_10594231	Not Available	622	Open in IMG/M
3300018034\|Ga0187863_10784935	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	540	Open in IMG/M
3300018034\|Ga0187863_10834474	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	523	Open in IMG/M
3300018035\|Ga0187875_10631324	Not Available	564	Open in IMG/M
3300018042\|Ga0187871_10094446	All Organisms → cellular organisms → Bacteria	1729	Open in IMG/M
3300018043\|Ga0187887_10641541	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	627	Open in IMG/M
3300018047\|Ga0187859_10318651	Not Available	844	Open in IMG/M
3300021402\|Ga0210385_10546903	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	881	Open in IMG/M
3300021405\|Ga0210387_10920062	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	769	Open in IMG/M
3300021405\|Ga0210387_11865117	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	505	Open in IMG/M
3300021432\|Ga0210384_11658883	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	545	Open in IMG/M
3300021477\|Ga0210398_10341122	All Organisms → cellular organisms → Bacteria	1222	Open in IMG/M
3300021477\|Ga0210398_10478319	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1015	Open in IMG/M
3300022518\|Ga0224548_1016952	Not Available	799	Open in IMG/M
3300022557\|Ga0212123_10664469	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	647	Open in IMG/M
3300022840\|Ga0224549_1046476	Not Available	590	Open in IMG/M
3300025434\|Ga0208690_1002464	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → unclassified Rhizobiaceae → Rhizobiaceae bacterium	5126	Open in IMG/M
3300025463\|Ga0208193_1004206	Not Available	5259	Open in IMG/M
3300026215\|Ga0209849_1073323	Not Available	603	Open in IMG/M
3300026216\|Ga0209903_1039966	Not Available	707	Open in IMG/M
3300026281\|Ga0209863_10014246	All Organisms → cellular organisms → Bacteria	2483	Open in IMG/M
3300026281\|Ga0209863_10085071	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	932	Open in IMG/M
3300027905\|Ga0209415_10653978	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	764	Open in IMG/M
3300028047\|Ga0209526_10848354	Not Available	561	Open in IMG/M
3300028773\|Ga0302234_10183064	Not Available	908	Open in IMG/M
3300028776\|Ga0302303_10288440	Not Available	555	Open in IMG/M
3300028795\|Ga0302227_10126242	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1031	Open in IMG/M
3300029882\|Ga0311368_10282644	Not Available	1266	Open in IMG/M
3300029910\|Ga0311369_10692387	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	838	Open in IMG/M
3300029939\|Ga0311328_10871353	Not Available	596	Open in IMG/M
3300029943\|Ga0311340_10288974	All Organisms → cellular organisms → Bacteria	1571	Open in IMG/M
3300029944\|Ga0311352_10253760	All Organisms → cellular organisms → Bacteria	1479	Open in IMG/M
3300029944\|Ga0311352_10450790	Not Available	1047	Open in IMG/M
3300029944\|Ga0311352_11138864	Not Available	595	Open in IMG/M
3300029986\|Ga0302188_10155262	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	985	Open in IMG/M
3300029999\|Ga0311339_10189615	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2345	Open in IMG/M
3300030054\|Ga0302182_10369541	Not Available	602	Open in IMG/M
3300030503\|Ga0311370_10394883	Not Available	1741	Open in IMG/M
3300030503\|Ga0311370_10414433	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1687	Open in IMG/M
3300030509\|Ga0302183_10158697	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	887	Open in IMG/M
3300030520\|Ga0311372_11106394	Not Available	1029	Open in IMG/M
3300030524\|Ga0311357_10461936	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1188	Open in IMG/M
3300030580\|Ga0311355_10983991	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	759	Open in IMG/M
3300030580\|Ga0311355_11386527	Not Available	612	Open in IMG/M
3300030617\|Ga0311356_10888657	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	840	Open in IMG/M
3300031057\|Ga0170834_108686426	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	759	Open in IMG/M
3300031233\|Ga0302307_10551177	Not Available	582	Open in IMG/M
3300031234\|Ga0302325_10830305	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	1298	Open in IMG/M
3300031234\|Ga0302325_13037034	Not Available	541	Open in IMG/M
3300031525\|Ga0302326_10067958	All Organisms → cellular organisms → Bacteria	6623	Open in IMG/M
3300031525\|Ga0302326_10979453	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1191	Open in IMG/M
3300031525\|Ga0302326_11385503	All Organisms → cellular organisms → Bacteria → Acidobacteria	951	Open in IMG/M
3300031525\|Ga0302326_11598755	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	866	Open in IMG/M
3300031525\|Ga0302326_12366378	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	671	Open in IMG/M
3300031564\|Ga0318573_10370906	All Organisms → cellular organisms → Bacteria	769	Open in IMG/M
3300031718\|Ga0307474_10696758	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	802	Open in IMG/M
3300031726\|Ga0302321_103127535	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	540	Open in IMG/M
3300031771\|Ga0318546_10040575	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2841	Open in IMG/M
3300031788\|Ga0302319_10613099	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Corallococcus → unclassified Corallococcus → Corallococcus sp. CA054B	1129	Open in IMG/M
3300031837\|Ga0302315_10367159	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	809	Open in IMG/M
3300031942\|Ga0310916_11515932	Not Available	546	Open in IMG/M
3300031981\|Ga0318531_10521815	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium	538	Open in IMG/M
3300032001\|Ga0306922_12313471	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	515	Open in IMG/M
3300032160\|Ga0311301_10429042	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2005	Open in IMG/M
3300032162\|Ga0272424_1273603	Not Available	565	Open in IMG/M
3300032261\|Ga0306920_101401477	Not Available	1002	Open in IMG/M
3300032515\|Ga0348332_13463130	Not Available	567	Open in IMG/M
3300032895\|Ga0335074_10046768	All Organisms → cellular organisms → Bacteria	5980	Open in IMG/M
3300033982\|Ga0371487_0281565	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	756	Open in IMG/M
3300034124\|Ga0370483_0225345	Not Available	640	Open in IMG/M
3300034163\|Ga0370515_0482685	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	523	Open in IMG/M
3300034282\|Ga0370492_0069621	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1441	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	71.30%
Aquatic	Environmental → Aquatic	28.70%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	37.04%
Peat	Environmental → Terrestrial → Peat	32.41%
Freshwater	Environmental → Aquatic → Freshwater	26.85%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.85%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.93%
Rock-Dwelling (Endoliths)	Environmental → Terrestrial → Rock-Dwelling (Endoliths)	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Peat → Unclassified	32.41%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	26.85%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	18.52%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	15.74%
Loam	Environmental → Terrestrial → Soil → Loam	2.78%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	1.85%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.93%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	32.41%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	22.22%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	12.96%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	12.04%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	4.63%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	4.63%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.70%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.78%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	1.85%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.93%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.93%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	25.93%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	10.19%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.26%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	7.41%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	4.63%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	4.63%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	2.78%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	2.78%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	2.78%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	2.78%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	1.85%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.85%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.85%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	1.85%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	1.85%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.85%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	1.85%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.93%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.93%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	0.93%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	0.93%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.93%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.93%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.93%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.93%
Rock	Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock	0.93%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300005944	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 2 DNA2013-048	Environmental	Open in IMG/M
3300005993	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046	Environmental	Open in IMG/M
3300006638	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-A	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300009635	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_10	Environmental	Open in IMG/M
3300009639	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_40	Environmental	Open in IMG/M
3300009641	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_150	Environmental	Open in IMG/M
3300009650	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-061	Environmental	Open in IMG/M
3300010880	Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300014161	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_30_metaG	Environmental	Open in IMG/M
3300014169	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG	Environmental	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300014490	Permafrost microbial communities from Stordalen Mire, Sweden - 611E1M metaG	Environmental	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300014499	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2S metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014654	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaG	Environmental	Open in IMG/M
3300014658	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_10_metaG	Environmental	Open in IMG/M
3300017929	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_100	Environmental	Open in IMG/M
3300017935	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_40	Environmental	Open in IMG/M
3300018009	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_40	Environmental	Open in IMG/M
3300018016	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_40	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300018035	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_10	Environmental	Open in IMG/M
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental	Open in IMG/M
3300018043	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300022518	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P2 20-24	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300022840	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P3 1-5	Environmental	Open in IMG/M
3300025434	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_10 (SPAdes)	Environmental	Open in IMG/M
3300025463	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_10 (SPAdes)	Environmental	Open in IMG/M
3300026215	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 2 DNA2013-048 (SPAdes)	Environmental	Open in IMG/M
3300026216	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil leachate replicate DNA2013-051 (SPAdes)	Environmental	Open in IMG/M
3300026281	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028773	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_2	Environmental	Open in IMG/M
3300028776	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E2_1	Environmental	Open in IMG/M
3300028795	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_1	Environmental	Open in IMG/M
3300029882	III_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300029910	III_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300029939	I_Bog_E3 coassembly	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300029944	II_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300029986	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E2_1	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030054	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_1	Environmental	Open in IMG/M
3300030503	III_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030509	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_2	Environmental	Open in IMG/M
3300030520	III_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030524	II_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300030580	II_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030617	II_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031233	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_2	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031726	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_1	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031788	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_2	Environmental	Open in IMG/M
3300031837	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N3_1	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032162	Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte nord	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300033982	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB22AY SIP fraction	Environmental	Open in IMG/M
3300034124	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_06D_14	Environmental	Open in IMG/M
3300034163	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_04D_14	Environmental	Open in IMG/M
3300034282	Peat soil microbial communities from wetlands in Alaska, United States - Eight_mile_03D_16	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0062384_1004262321	3300004082	Bog Forest Soil	VDSLAKNLLTCIPEPDAEAMEAAATRAKGRHVRLLKSAGQAIVGESKSALQELVNRGER*
Ga0062384_1008205312	3300004082	Bog Forest Soil	AMFALVDSLAKVLLTCIPEPDGLALEAAVAKAQGRHARLLKNAGQAMGSDSRVAMRDLVNQGNEKG*
Ga0062389_1007808242	3300004092	Bog Forest Soil	MFALVDSLAKVLLTCIPEPDGLALEAAVAKAQGRHARLLKNAGQAMGSDSRVAMRDLVNQGNEKG*
Ga0062389_1031890342	3300004092	Bog Forest Soil	LFALVDSLAKILLTCIPDPDAEAMEAAVTSAKGRHVRLLKSAGQAITGESQSTLQELVNRGER*
Ga0062388_1005569031	3300004635	Bog Forest Soil	LLTCIPEPDREALESAVARAHGRHTRLLKSAGQAMGGDSRLAMQELVKHGER*
Ga0070762_103052323	3300005602	Soil	LTCVPEPGGEAMEAAVARARGRHARLLKSAGQAMVGDSQLAMQDLVKFGEE*
Ga0070766_104089443	3300005921	Soil	LAKILLTCVPEPTGEAMEVAVARARGRHARLLKSAGQAMAGDSRLAMQDLVKFGEE*
Ga0066788_100532741	3300005944	Soil	DSLAKVVLTCVPEPGGEAMEAAVARARGRHARLLKSAGQAMVGDSQLAMQDMVNRGEG*
Ga0080027_100165101	3300005993	Prmafrost Soil	CVPEPGGEAMEAAVARARGRHARLLKSAGQAMVGDSQLAMQDLVNRGEG*
Ga0075522_100766772	3300006638	Arctic Peat Soil	VNSLAKVMLTCMPEPAGEAMEAAVAKAQARHARLLKNAGQSMGVSQLDMQDLVNRGGQ*
Ga0073928_106315942	3300006893	Iron-Sulfur Acid Spring	FAFVDSLAKVLLTCVPEPGGEAMEAAVARARGRHARLLKSAGQAMVGDSQVAMRDLVNRGEG*
Ga0116117_11184882	3300009635	Peatland	EPGGEAMEAAVARARGRHAQLLKSAGQAMVGDSQVAMRDLVNHGEG*
Ga0116122_10713702	3300009639	Peatland	LAKVVLTCVPEPGGEAMEAAVARARGRYARLLKNAGQAMVGDSKLAMQDLVAHGEE*
Ga0116120_12949531	3300009641	Peatland	TCVPEPGGEAMEAAVARARRRHVQLLKSAGQAMVGDSKLAMQDLVACGEG*
Ga0105857_10397803	3300009650	Permafrost Soil	VDSLAKVVLTCVPEPGGEAMEAAVARARGRHARLLKSAGQAMVGDSQLAMQDMVNRGEG*
Ga0126350_114199912	3300010880	Boreal Forest Soil	PEPGGEAMEAAVARARGRHARLLKSAGQAMVGDSQVAMRDLVNRGEG*
Ga0137377_114541491	3300012211	Vadose Zone Soil	LTCLPELGGEAMEPAVAWARGRDGRLLKSAGQAMVGDSQLAMQDLVIRGEG*
Ga0137369_102396535	3300012355	Vadose Zone Soil	PEPGGEALDAAVARARGRHAQLLKSAGQAMVGDSQLTMQDLAVRGER*
Ga0181529_104986311	3300014161	Bog	DSLAKVLLTCVPEPGGEALEVAVARARRRHVQLLQSAGQAMVGDSQLAMQDLVNHAEG*
Ga0181529_107047592	3300014161	Bog	GEAMEAAVTRARGRHARLLKSAGQAMSGDSHLAMQELVNHGEG*
Ga0181531_102950161	3300014169	Bog	AKVVLTCVPEPCGEAMEAAVARARGRHARLLKSAGQAMVGGSQVAMQDLVNRGEG*
Ga0181531_104246711	3300014169	Bog	IPEPDAEAMEAAVTRAKGRHVRLLKSAGQAIVGESQSALQELVNPGER*
Ga0182018_106182852	3300014489	Palsa	EPGGEAMEAAVARARGRHARLLKSARQAMVGDSQLAMQDLVNHGEG*
Ga0182010_108404171	3300014490	Fen	FVDSLAKILLTCLPEPGGEVMEAAVARARGRHARLLKTAGQAMVGDSKLAMQDLVAHGEE
Ga0182015_102504061	3300014495	Palsa	GGEAMEAAVARARGRHVRLLKSAGQAMVGDSQVAMQDLVNRGEG*
Ga0182012_104193351	3300014499	Bog	SLAKVVLTCVPEPGGEAMEAAVARARGRRARLLKSAGQAMVGDSQVAMRDLVNRGAG*
Ga0182024_105708512	3300014501	Permafrost	VDSLAKVLLTCVPEPGGEAMEAAVARARGRQARLLKSAGQAMVGDSQLAMRDLANHGEE*
Ga0182024_125595021	3300014501	Permafrost	GGDAVEAAVASAQRRHARLLKSAGQAMVGDSQLAMQELVNRGER*
Ga0181525_100327643	3300014654	Bog	VDCLAKILLTCIPERDVHALEAAAARAQGRHAILLKSAGQTMPAHVRLAMQDFVKDGER*
Ga0181525_102148472	3300014654	Bog	EISRLGRAQQAQFAFMDSLSKILLTCIPEPDGRALEAAVATAQGRHARLLKSAGLAMGEESRLALQELVQHGER*
Ga0181525_102316102	3300014654	Bog	LFALVDSLAKILLTCIPEPDAEAMEAAVTRAKGRHVRLLKSAGQAIVGESQSALQELVNPGER*
Ga0181519_107042032	3300014658	Bog	GRAQQAQFAFMDSLAKILLTCIPEPDGRALEAAVATAQGRHARLLKSAGLAMGEESRLALQELVQHGER*
Ga0187849_11670481	3300017929	Peatland	LAKVVLTCVPEPGGEAMEAAVARARGRHARLLKNAGQAMVGDSKLAMQDLVAHGEE
Ga0187848_100310491	3300017935	Peatland	LTCVPEPGGEAMEAAVARARGRHARLLKNAGQAMVGDSKLAMQDLVAHGEE
Ga0187884_100005771	3300018009	Peatland	FLDSLAKVVLTCVPEPGGEAMEAAVARARGRHARLLKNAGQAMVGDSKLAMQDLVAHGEE
Ga0187880_11315662	3300018016	Peatland	KVLLTCVPEPGGEAMEAALARARRRHVQLLKSAGQAMVGDSQLAMQDLVNYGEG
Ga0187863_105942312	3300018034	Peatland	LTCVPEPGGEAMEAAVARARGRHARLLKSAGQAMVGDSQVAMQDLVNRGEG
Ga0187863_107849352	3300018034	Peatland	CVPEPGGEAMEAAVTRARGRHARLLKSAGQAMSGDSHLAMQELVNNGEG
Ga0187863_108344742	3300018034	Peatland	ILLTCIPEPDGRALEAAVATAQSRHARLLKSAGLAMGEVSRLALQELVQHGER
Ga0187875_106313242	3300018035	Peatland	EPGGEAMEAAVARARGRHARLLKSAGQAMVGDSQVAMQDLVNRGEG
Ga0187871_100944461	3300018042	Peatland	VLLTCIPEPDGLALEAAVAKAQGRHARLLKNAGQAMGSDSRVAMRDLVSQGNGERMRSDTGTP
Ga0187887_106415411	3300018043	Peatland	DSLAKILLTCIPEPDGHALAAAVARAQGRHARLLKSAGQAMGDHSRLAMQELVKHGER
Ga0187859_103186512	3300018047	Peatland	LLDSLAKILLTCIPEPDIHALEAAVARAQGRHARLLKSAGHAMGADSRLAMQELLKHGER
Ga0210385_105469032	3300021402	Soil	DSLAKILLTCVPEPGGEAMEAAVTRARGRHARLLKNAGQAMSGDSHLAMQELVNHGEG
Ga0210387_109200622	3300021405	Soil	LLTCVPEPGGEAMEAAVTTARGRHARLLKSAGQAMVGDSHLAMQELVNHGEG
Ga0210387_118651172	3300021405	Soil	VILTCVPEPGGESMEAAVARARGRHIRLLKSAGHAMAGDSQLAMQDLVNHGER
Ga0210384_116588831	3300021432	Soil	VDSLAKILLTCIPEPGGDAVEAAVATAQRRHARLLKSAGQAMVGDSQLAMQELVNRGER
Ga0210398_103411224	3300021477	Soil	FLDSLAKVVLTCVPEPGGEAMEAAVARARGRHARLLKSAGQAMVGDSQLAMQDLVKFGEE
Ga0210398_104783192	3300021477	Soil	KVVLTCVPEPGGEAMEAAVARARGRHARLLKSAGQAMVGDSHLAMQDLVKHGEG
Ga0224548_10169521	3300022518	Soil	AKILLTCIPEPDGHALAAAVARAQGRHARLLKSAGQAMGDDSRRAMQELVKNGER
Ga0212123_106644692	3300022557	Iron-Sulfur Acid Spring	LTCVPEPGGEAMEAAVARARGRHARLLKSAGQAMVGDSQVAMRDLVNRGEG
Ga0224549_10464761	3300022840	Soil	KILLTCIPEPDGHALASAVARAQGRHARLLKSAGQAMGDDSRRAMGELVKNSDR
Ga0208690_10024644	3300025434	Peatland	ALVDSLAKILLTCIPEPDGHALAAAVARAQGRHARLLKSAGQAMGDDSRLAMKELVKHGE
Ga0208193_10042063	3300025463	Peatland	MDSLAKILLTCAPEPGGEAMEAAVTRGCGRHARLLKSAGQAMVGDSQLAMQDFVNHGEE
Ga0209849_10733231	3300026215	Soil	GGEAMEAAVARARGRHARLLKSAGQAMVGDSQLAMQDMVNRGEG
Ga0209903_10399661	3300026216	Soil	VLTCVPEPGGEAMEAAVARARGRHARLLKSAGQAMVGDSQLAMQDLVNRGEG
Ga0209863_100142464	3300026281	Prmafrost Soil	PEPGGEAMEAAVARARGRHARLLKSAGQAMVGDSQLAMQDLVNRGEG
Ga0209863_100850711	3300026281	Prmafrost Soil	GGEAMEAAVARARGRHARLLKNAGQAMVGDSQLAMPDLVNRGEG
Ga0209415_106539781	3300027905	Peatlands Soil	FAFVDSLAKILLTCVPEPGGEAMEAAVARARGRHARLLKSAGQAMSGDSHLAMQELVNHGEG
Ga0209526_108483541	3300028047	Forest Soil	DSLAKILLTCVPEPGGEAMEAAVARARGRHARLLKSAGQAMVGDSHLAMQELVNHGEG
Ga0302234_101830642	3300028773	Palsa	VDSLAKNLLTCIPEPDAEAMEAAVTRAKGRHVRLLKSAGQAIVGESKSALQELVNRGER
Ga0302303_102884402	3300028776	Palsa	GGEAMEAAVARARGRHARLLKSAGQAMVGDSQVAMQDLVNRGEG
Ga0302227_101262421	3300028795	Palsa	AKILLTCIPEPDAEAMEAAVTRAKARHARLLKSAGQAIVGESQSALRELVNRGER
Ga0311368_102826441	3300029882	Palsa	AKNLLTCIPEPDAEAMEAAVTRAKGRHVRLLKSAGQAIVGESQSALQELVNRGER
Ga0311369_106923872	3300029910	Palsa	NLLTCIPEPDAEAMEAAVTRAKGRHVRLLKSAGQAIVGESKSALQELVNRGER
Ga0311328_108713531	3300029939	Bog	EPGGEAMEAAVARARGRHARLLKSAGQAMVGDSRVAMQDLVNRGEG
Ga0311340_102889741	3300029943	Palsa	VDSLAKVLLTCVPEPGEGAMEAAVARARGRHARLLKTAGQAMVGDSQLAMQDLLNQGEG
Ga0311352_102537601	3300029944	Palsa	VDSLAKVLLTCVPEPGEGAMEAAVARARGRHARLLKTAGQAMVGDSQLAMQDLLNHGEG
Ga0311352_104507904	3300029944	Palsa	LFALVDSLAKNLLTCIPEPDAEAMEAAVTRAKGRHVRLLKSAGQAIVGESKSALQELVNRGER
Ga0311352_111388642	3300029944	Palsa	IPEPDAEVMEAAVTRAKGRHARLLRSAGQAIVGESQSALQELVNRGER
Ga0302188_101552622	3300029986	Bog	TCVPEPGGEAMEAAVARARGRHARLLKNAGQSMAGDSKLAMQDLVTRGEE
Ga0311339_101896154	3300029999	Palsa	CVPEPGGEAMEAAVARARGRHARLLKSAGQAMVGDSQVAMQDLVNRGEG
Ga0302182_103695412	3300030054	Palsa	LLTCIPEPDAEVMEAAVTRAKGRHARLLRSAGQAIVGESQSALQELVNRGER
Ga0311370_103948831	3300030503	Palsa	VDSLAKNLLTCIPEPDAEAMEAAVAKAKGRHVRLLKSAGQAIVGESQSALQELVNRGER
Ga0311370_104144331	3300030503	Palsa	AKILPTCIPEPDAEAMEAAVTRAKGRHVRLLKSAGQAIVGESQSAFQELVNRCER
Ga0302183_101586971	3300030509	Palsa	QQAQFAFMDSLAKILLTCIPEPDGRALEAAVATAQGRHARLLKSAGLAMGEESRLALQELVQHGER
Ga0311372_111063942	3300030520	Palsa	ALVDSLAKNLLTCIPEPDAEAMEAAVTRAKGRHVRLLKSAGQAIVGESKSALQELVNRGE
Ga0311357_104619362	3300030524	Palsa	VDSLAKNLLTCIPEPDAEAMEAAVTRAKARHARLLKSAGQAIVGESQSALRELVNRGER
Ga0311355_109839912	3300030580	Palsa	AKILLTCVPEPSAEAMEAAVARARGRHARLLKSTGQAMVGDSQLAMQDLVKYGEE
Ga0311355_113865271	3300030580	Palsa	VDSLAKNLLTCIPEPDAEAMEAAVTRAKGRHVRLLKSAGQAIVGESQSALQELVNRGER
Ga0311356_108886571	3300030617	Palsa	VDSLAKILLTCIPEPDAEAMEAAVTRAKARHARLLKSAGQAIVGESQSALRALVNRGER
Ga0170834_1086864262	3300031057	Forest Soil	FAFVDSLAKVLLTCVPEPGGEAMEAAVAKARGRHARLLKSAGQAMVGESQVAMRDLVNRGEG
Ga0302307_105511772	3300031233	Palsa	LFALVDSLAKNLLTCIPEPDAEAMEAAVAKAKGRHVRLLKSAGQAIVGESQSALQELVNRGER
Ga0302325_108303053	3300031234	Palsa	VDNLAKILLTCVPEPGGEAMEAAVARARGRHARLLKKAGQAMVGDSQLVMQELVKHCEE
Ga0302325_130370342	3300031234	Palsa	KVVLTCVPEPAGEAMEAAVARARGRHARLLKSAGQAMVGDSQLAMQDLVKHGEG
Ga0302326_100679585	3300031525	Palsa	VLLTCVPEPGGEAMEAAVARARGRHARLLKSAGQAMVGDSQVAMQDLVTRGEG
Ga0302326_109794531	3300031525	Palsa	AKILLTCIPEPDGRALEAAVATAQGRHARLLKSAGLAMGEESRLALQELVQHGER
Ga0302326_113855032	3300031525	Palsa	LNSVPNVVPTCVPKPGVEAMQASIARARGRQVRLLKSTGQALVGDSQLAMQDLVKQGEE
Ga0302326_115987551	3300031525	Palsa	QQALFAFVDSLAKILLTCVPEPGGEAMEAAVTRARGRHARLLKSAGQAMVGDSHLAMQELVNHGQG
Ga0302326_123663782	3300031525	Palsa	EPDAEVMEAPVTRAKGRHVRLLKSAGQAIVGESQSAFQELVNRCER
Ga0318573_103709061	3300031564	Soil	PEPGGEAQEAAIARARGRHARLLKSAGQAMVGDSQLAMQDLVNRAEG
Ga0307474_106967582	3300031718	Hardwood Forest Soil	VDSLAKILLTCIPEPDREALESAVARAHGRHTRLLKSAGQAMGGDSRLAMQELVKHGER
Ga0302321_1031275351	3300031726	Fen	FVKVFLTCVPEPAGQAMDAAVTRARGRHARLLKSAGQSMVGESQLAMQEMVNRDDK
Ga0318546_100405751	3300031771	Soil	GQDSADLHPRTGGEAIEAAVARAQGRHARLLKSAGQAMVGDSRLAMRELVNHGER
Ga0302319_106130991	3300031788	Bog	CVPEPGGEAMEAAVARARGRHARLLKSAAQSMVGDSELALQDLVNNCEGL
Ga0302315_103671592	3300031837	Palsa	SLAKVLLTCVPEPGGEAMEAAVARARGRHARLLKSAGQAMVGDSQVAMQDLVNRGEG
Ga0310916_115159321	3300031942	Soil	VTCLPELGGEALEAALARARGRHARLLKSAGQAMVGDSQLAMKDLLNRAEA
Ga0318531_105218152	3300031981	Soil	DSADLHPRTGGEAIEAAVARAQGRHARLLKSAGQAMVGDSRLAMRELVNHGER
Ga0306922_123134712	3300032001	Soil	VPEPGSDAMEAAVAKARDRHTRLLKNAGQAMDGESQFAFKELVDRGEG
Ga0311301_104290424	3300032160	Peatlands Soil	LLTCVPEPGGEAMEAAVARARGRHARLLKSAGQAMVGDAQLSLQDLVNHGEG
Ga0272424_12736031	3300032162	Rock	EPAGEAMEAAVARARGRHARLLKSAGQAMVGDSQLAMQDLVAHGEE
Ga0306920_1014014772	3300032261	Soil	VTCLPELGGEALEAALARARGRHARLVKSAGQAMVGDSQLAMKDLLNRAEA
Ga0348332_134631302	3300032515	Plant Litter	CVPEPGGEGMEAAVARARGRHARLLKSAGQAMVGDSQLAMQELVNRGEG
Ga0335074_100467681	3300032895	Soil	QFAFMDSLAKILLTCIPEPDGHALEAAVASAQSRHARLLKSAGIAMGEESRLALQELVQHGER
Ga0371487_0281565_565_756	3300033982	Peat Soil	LFAFLDSLAKVVLTCVPEPGGEAMEAAVARARGRHARLLKSAGQAMLGDSQVAMQDLVNRGEG
Ga0370483_0225345_459_638	3300034124	Untreated Peat Soil	VDSLAKVVLTCVPEPVGEAKEIAVAKAQSRYARLVKSAGQAMGGDSKLTMQELVGRGEG
Ga0370515_0482685_1_186	3300034163	Untreated Peat Soil	DSLAKVLPTCIPEPDGLALEAAVAKAQGRHARLLKNAGQAMGSDSRLAIRDLVNQGNGDN
Ga0370492_0069621_1_159	3300034282	Untreated Peat Soil	LLTCVPEPGGEAMEAAVARARGRHARLLKSAGQSMVGDSQVAMQDLVTCGEG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F090318

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences