Metagenome / Metatranscriptome Family F090426

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F090426
Family Type	Metagenome / Metatranscriptome
Number of Sequences	108
Average Sequence Length	55 residues
Representative Sequence	MVTWKQVIERHGEEMAEKMIATGLLDAITCVMLPSGEADIPECDIARALRAVRGLPVHDWD
Number of Associated Samples	72
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	48.15 %
% of genes near scaffold ends (potentially truncated)	59.26 %
% of genes from short scaffolds (< 2000 bps)	74.07 %
Associated GOLD sequencing projects	56
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (84.259 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge (47.222 % of family members)
Environment Ontology (ENVO)	Unclassified (87.963 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (56.481 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 47.54% β-sheet: 8.20% Coil/Unstructured: 44.26%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF02384	N6_Mtase	10.19
PF12323	HTH_OrfB_IS605	9.26
PF07282	OrfB_Zn_ribbon	6.48
PF03876	SHS2_Rpb7-N	5.56
PF05063	MT-A70	2.78
PF13456	RVT_3	2.78
PF14239	RRXRR	0.93
PF10102	DUF2341	0.93
PF04055	Radical_SAM	0.93
PF07581	Glug	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG1095	DNA-directed RNA polymerase, subunit E'/Rpb7	Transcription [K]	5.56
COG4725	N6-adenosine-specific RNA methylase IME4	Translation, ribosomal structure and biogenesis [J]	5.56

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	91.67 %
Unclassified	root	N/A	8.33 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	88.89 %
Unclassified	root	N/A	8.33 %
Viruses	superkingdom	All Organisms → Viruses	2.78 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	84.26 %
Unclassified	root	N/A	8.33 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	4.63 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.78 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	72.22 %
Unclassified	root	N/A	8.33 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	4.63 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.78 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.93 %

Name	Rank	Taxonomy	Distribution
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	72.22 %
Unclassified	root	N/A	8.33 %
Stenosarchaea group	clade	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group	3.70 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.78 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.93 %

Name	Rank	Taxonomy	Distribution
Clostridia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	72.22 %
Unclassified	root	N/A	8.33 %
Methanomicrobia	class	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	3.70 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.78 %
Patescibacteria group	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group	0.93 %

Name	Rank	Taxonomy	Distribution
Eubacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	72.22 %
Unclassified	root	N/A	8.33 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.78 %
Methanomicrobiales	order	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	0.93 %
Parcubacteria group	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group	0.93 %

Name	Rank	Taxonomy	Distribution
Clostridiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae	72.22 %
Unclassified	root	N/A	8.33 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.78 %
unclassified Parcubacteria group	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group	0.93 %
unclassified Methanomicrobiales	no rank	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales	0.93 %

Name	Rank	Taxonomy	Distribution
unclassified Clostridiaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae	72.22 %
Unclassified	root	N/A	8.33 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.78 %
Methanomicrobiales archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon	0.93 %
Parcubacteria group bacterium ADurb.Bin216	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium ADurb.Bin216	0.93 %

Name	Rank	Taxonomy	Distribution
Clostridiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	72.22 %
Unclassified	root	N/A	8.33 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.78 %
Methanomicrobiales archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon	0.93 %
Parcubacteria group bacterium ADurb.Bin216	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium ADurb.Bin216	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001592\|Draft_10167402	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	901	Open in IMG/M
3300002168\|JGI24712J26585_10047919	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	1853	Open in IMG/M
3300002168\|JGI24712J26585_10103842	All Organisms → cellular organisms → Bacteria	948	Open in IMG/M
3300002170\|JGI24711J26586_10164341	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	546	Open in IMG/M
3300002173\|JGI24709J26583_10063231	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	1379	Open in IMG/M
3300002596\|draft_1415788	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	4444	Open in IMG/M
3300003667\|LSCM3L_1029017	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	901	Open in IMG/M
3300006398\|Ga0079067_1543124	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	1373	Open in IMG/M
3300006596\|Ga0079074_1246669	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	669	Open in IMG/M
3300006600\|Ga0079065_1357389	Not Available	735	Open in IMG/M
3300006805\|Ga0075464_10111744	All Organisms → cellular organisms → Bacteria	1579	Open in IMG/M
3300009121\|Ga0118671_1050266	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	1186	Open in IMG/M
3300009540\|Ga0073899_11088122	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	560	Open in IMG/M
3300009607\|Ga0123327_1052367	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	1665	Open in IMG/M
3300009642\|Ga0123331_1017825	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	2980	Open in IMG/M
3300009642\|Ga0123331_1025913	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	2296	Open in IMG/M
3300009642\|Ga0123331_1087014	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	1021	Open in IMG/M
3300009642\|Ga0123331_1124362	All Organisms → cellular organisms → Bacteria	809	Open in IMG/M
3300009656\|Ga0123329_1026335	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	2988	Open in IMG/M
3300009656\|Ga0123329_1228190	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	663	Open in IMG/M
3300009666\|Ga0116182_1091879	All Organisms → cellular organisms → Bacteria	1550	Open in IMG/M
3300009666\|Ga0116182_1201850	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	882	Open in IMG/M
3300009666\|Ga0116182_1332999	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	615	Open in IMG/M
3300009670\|Ga0116183_1459671	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	521	Open in IMG/M
3300009671\|Ga0123334_1478360	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	514	Open in IMG/M
3300009674\|Ga0116173_1057125	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	2142	Open in IMG/M
3300009680\|Ga0123335_1205073	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	1014	Open in IMG/M
3300009681\|Ga0116174_10446165	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	595	Open in IMG/M
3300009685\|Ga0116142_10517927	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	566	Open in IMG/M
3300009693\|Ga0116141_10162482	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	1265	Open in IMG/M
3300009693\|Ga0116141_10367409	All Organisms → cellular organisms → Bacteria	745	Open in IMG/M
3300009693\|Ga0116141_10524008	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	595	Open in IMG/M
3300009696\|Ga0116177_10098667	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	1700	Open in IMG/M
3300009704\|Ga0116145_1131105	Not Available	1018	Open in IMG/M
3300009707\|Ga0116195_1000861	All Organisms → cellular organisms → Bacteria	21470	Open in IMG/M
3300009707\|Ga0116195_1072014	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium ADurb.Bin216	742	Open in IMG/M
3300009708\|Ga0116194_1021173	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	2060	Open in IMG/M
3300009715\|Ga0116160_1076465	Not Available	1507	Open in IMG/M
3300009773\|Ga0123333_10305677	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	662	Open in IMG/M
3300009780\|Ga0116156_10064190	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	2267	Open in IMG/M
3300010235\|Ga0136247_10040464	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	781	Open in IMG/M
3300010347\|Ga0116238_10296230	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	1080	Open in IMG/M
3300010351\|Ga0116248_10830538	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	641	Open in IMG/M
3300010353\|Ga0116236_10060828	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	3919	Open in IMG/M
3300010353\|Ga0116236_10099118	All Organisms → cellular organisms → Archaea → Euryarchaeota	2840	Open in IMG/M
3300010355\|Ga0116242_10726417	All Organisms → cellular organisms → Bacteria	879	Open in IMG/M
3300010356\|Ga0116237_10059787	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	4215	Open in IMG/M
3300010356\|Ga0116237_10176406	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	2047	Open in IMG/M
3300010356\|Ga0116237_10935695	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	731	Open in IMG/M
3300010365\|Ga0116251_10143301	All Organisms → cellular organisms → Bacteria	1516	Open in IMG/M
3300010365\|Ga0116251_10286985	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	942	Open in IMG/M
3300014203\|Ga0172378_10178418	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	1699	Open in IMG/M
3300014203\|Ga0172378_10276717	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	1301	Open in IMG/M
3300014203\|Ga0172378_10345132	All Organisms → cellular organisms → Bacteria	1136	Open in IMG/M
3300014204\|Ga0172381_10015361	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon	7114	Open in IMG/M
3300014204\|Ga0172381_10099400	All Organisms → Viruses → Predicted Viral	2415	Open in IMG/M
3300014204\|Ga0172381_10495155	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	946	Open in IMG/M
3300014204\|Ga0172381_11291152	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	529	Open in IMG/M
3300014205\|Ga0172380_10445682	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	964	Open in IMG/M
3300014206\|Ga0172377_10362601	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	1211	Open in IMG/M
3300014206\|Ga0172377_10521636	Not Available	966	Open in IMG/M
3300015214\|Ga0172382_10684424	Not Available	718	Open in IMG/M
3300015214\|Ga0172382_11087456	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	525	Open in IMG/M
3300019237\|Ga0180028_1316341	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	563	Open in IMG/M
3300020072\|Ga0180031_1052204	Not Available	571	Open in IMG/M
3300020812\|Ga0214071_1417725	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	3814	Open in IMG/M
3300025393\|Ga0208041_1000518	Not Available	36233	Open in IMG/M
3300025677\|Ga0209719_1037462	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	1887	Open in IMG/M
3300025677\|Ga0209719_1093766	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	921	Open in IMG/M
3300025683\|Ga0208564_1014233	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	4073	Open in IMG/M
3300025708\|Ga0209201_1034289	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	2336	Open in IMG/M
3300025713\|Ga0208195_1073769	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	1309	Open in IMG/M
3300025714\|Ga0208458_1097752	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	1046	Open in IMG/M
3300025714\|Ga0208458_1242637	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	544	Open in IMG/M
3300025737\|Ga0208694_1049228	All Organisms → cellular organisms → Bacteria	1913	Open in IMG/M
3300025737\|Ga0208694_1121911	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	947	Open in IMG/M
3300025748\|Ga0208459_1033647	All Organisms → Viruses → Predicted Viral	2459	Open in IMG/M
3300025784\|Ga0209200_1087948	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	1201	Open in IMG/M
3300025784\|Ga0209200_1273177	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	563	Open in IMG/M
3300025856\|Ga0209604_1245895	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	686	Open in IMG/M
3300025856\|Ga0209604_1300070	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	593	Open in IMG/M
3300025859\|Ga0209096_1103432	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	1169	Open in IMG/M
3300025861\|Ga0209605_1174146	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	819	Open in IMG/M
3300025861\|Ga0209605_1189223	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	776	Open in IMG/M
3300025871\|Ga0209311_1305891	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	596	Open in IMG/M
3300025871\|Ga0209311_1327322	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	568	Open in IMG/M
3300025877\|Ga0208460_10334009	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	555	Open in IMG/M
3300026194\|Ga0209509_1008078	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	4621	Open in IMG/M
3300026195\|Ga0209312_1003323	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	9787	Open in IMG/M
3300026250\|Ga0209612_1009574	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	4739	Open in IMG/M
3300026250\|Ga0209612_1033722	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	1827	Open in IMG/M
3300026255\|Ga0209613_1003745	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	9815	Open in IMG/M
(restricted) 3300028561\|Ga0255343_1203757	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	764	Open in IMG/M
(restricted) 3300028576\|Ga0255340_1214704	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	783	Open in IMG/M
3300028601\|Ga0265295_1280658	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	610	Open in IMG/M
3300028602\|Ga0265294_10017827	Not Available	7485	Open in IMG/M
3300028602\|Ga0265294_10067983	All Organisms → cellular organisms → Bacteria	3032	Open in IMG/M
3300028602\|Ga0265294_10145849	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	1793	Open in IMG/M
3300028602\|Ga0265294_10265024	All Organisms → cellular organisms → Bacteria	1172	Open in IMG/M
3300028602\|Ga0265294_10309359	Not Available	1048	Open in IMG/M
3300028602\|Ga0265294_10322935	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	1015	Open in IMG/M
3300028602\|Ga0265294_10537483	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	701	Open in IMG/M
3300028602\|Ga0265294_10679725	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	591	Open in IMG/M
3300028603\|Ga0265293_10016866	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	8909	Open in IMG/M
3300028627\|Ga0302243_1073826	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	694	Open in IMG/M
3300028638\|Ga0302240_1115258	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	556	Open in IMG/M
3300029440\|Ga0167329_1010475	All Organisms → Viruses → Predicted Viral	2685	Open in IMG/M
3300029942\|Ga0168096_1005828	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	4395	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Engineered	Engineered	87.04%
Environmental	Environmental	12.96%

Habitat	Taxonomy	Distribution
Wastewater	Engineered → Wastewater	54.63%
Bioreactor	Engineered → Bioreactor	16.67%
Aquatic	Environmental → Aquatic	12.04%
Solid Waste	Engineered → Solid Waste	10.19%
Biotransformation	Engineered → Biotransformation	3.70%
Built Environment	Engineered → Built Environment	1.85%
Terrestrial	Environmental → Terrestrial	0.93%

Habitat	Taxonomy	Distribution
Anaerobic Digestor	Engineered → Wastewater → Anaerobic Digestor	50.00%
Anaerobic	Engineered → Bioreactor → Anaerobic	16.67%
Freshwater	Environmental → Aquatic → Freshwater	11.11%
Landfill	Engineered → Solid Waste → Landfill	10.19%
Industrial Wastewater	Engineered → Wastewater → Industrial Wastewater	3.70%
Mixed Alcohol Bioreactor	Engineered → Biotransformation → Mixed Alcohol Bioreactor	3.70%
Water Treatment Plant	Engineered → Built Environment → Water Treatment Plant	1.85%
Marine	Environmental → Aquatic → Marine	0.93%
Oil Reservoir	Environmental → Terrestrial → Oil Reservoir	0.93%
Activated Sludge	Engineered → Wastewater → Activated Sludge	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Engineered → Wastewater → Anaerobic Digestor → Unclassified	50.00%
Unclassified	Engineered → Bioreactor → Anaerobic → Unclassified	16.67%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	11.11%
Unclassified	Engineered → Solid Waste → Landfill → Unclassified	10.19%
Unclassified	Engineered → Biotransformation → Mixed Alcohol Bioreactor → Unclassified	3.70%
Petrochemical	Engineered → Wastewater → Industrial Wastewater → Petrochemical	1.85%
Unclassified	Engineered → Wastewater → Industrial Wastewater → Unclassified	1.85%
Unclassified	Engineered → Built Environment → Water Treatment Plant → Unclassified	1.85%
Coastal	Environmental → Aquatic → Marine → Coastal	0.93%
Unclassified	Environmental → Terrestrial → Oil Reservoir → Unclassified	0.93%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified	50.00%
Unclassified	Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified	16.67%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	10.19%
Unclassified	Engineered → Solid Waste → Landfill → Unclassified → Unclassified	10.19%
Unclassified	Engineered → Biotransformation → Mixed Alcohol Bioreactor → Unclassified → Unclassified	3.70%
Unclassified	Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified	1.85%
Unclassified	Engineered → Wastewater → Industrial Wastewater → Unclassified → Unclassified	1.85%
Unclassified	Engineered → Built Environment → Water Treatment Plant → Unclassified → Unclassified	1.85%
Coalbed Water	Environmental → Aquatic → Freshwater → Groundwater → Coalbed Water	0.93%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	0.93%
Unclassified	Environmental → Terrestrial → Oil Reservoir → Unclassified → Unclassified	0.93%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Anaerobic Digestor Sludge	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge	47.22%
Anaerobic Biogas Reactor	Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Biogas Reactor	15.74%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater	10.19%
Landfill Leachate	Engineered → Solid Waste → Landfill → Unclassified → Unclassified → Landfill Leachate	10.19%
Biogas Fermentantion	Engineered → Biotransformation → Mixed Alcohol Bioreactor → Unclassified → Unclassified → Biogas Fermentantion	3.70%
Activated Sludge	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Activated Sludge	1.85%
Hydrocarbon Resource Environments	Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified → Hydrocarbon Resource Environments	1.85%
Biosolids	Engineered → Wastewater → Industrial Wastewater → Unclassified → Unclassified → Biosolids	1.85%
Wastewater	Engineered → Built Environment → Water Treatment Plant → Unclassified → Unclassified → Wastewater	1.85%
Coalbed Water	Environmental → Aquatic → Freshwater → Groundwater → Coalbed Water → Coalbed Water	0.93%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	0.93%
Produced Fluid	Environmental → Terrestrial → Oil Reservoir → Unclassified → Unclassified → Produced Fluid	0.93%
Activated Sludge	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge	0.93%
Anaerobic Wastewater Sludge	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Wastewater Sludge	0.93%
Anaerobic Digester Digestate	Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Digester Digestate	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001592	Wastewater microbial communities from Syncrude, Ft. McMurray, Alberta - Microbes in water sample from Medicine Hat oil field -PW_MHGC_2012April2:	Engineered	Open in IMG/M
3300002168	Biogas fermentation microbial communities from Germany - Plant 3 DNA2	Engineered	Open in IMG/M
3300002170	Biogas fermentation microbial communities from Germany - Plant 3 DNA1	Engineered	Open in IMG/M
3300002173	Biogas fermentation microbial communities from Germany - Plant 2 DNA1	Engineered	Open in IMG/M
3300002596	Hydrocarbon contaminated oil fields microbial communities from Alberta, Canada - Microbes in water sample from Medicine Hat oil field -PW_MHGC_2012April10	Engineered	Open in IMG/M
3300003667	Lithgow State Coal Mine Metagenomic Study (LSCM 3 Late (Sample 2))	Environmental	Open in IMG/M
3300006398	Active sludge microbial communities from Illinois, USA, of municipal wastewater-treating anaerobic digesters - ADurb_Cas_03_SludgeMetaT (Metagenome Metatranscriptome)	Engineered	Open in IMG/M
3300006596	Active sludge microbial communities from Illinois, USA, of municipal wastewater-treating anaerobic digesters - ADurb_Leu_01_SludgeMetaT (Metagenome Metatranscriptome)	Engineered	Open in IMG/M
3300006600	Active sludge microbial communities from Illinois, USA, of municipal wastewater-treating anaerobic digesters - ADurb_Cas_01_SludgeMetaT (Metagenome Metatranscriptome)	Engineered	Open in IMG/M
3300006805	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA	Environmental	Open in IMG/M
3300009121	Syntrophic microbial communities from biogas reactors in Seattle, WA - R1.C12.But.A IDBA	Engineered	Open in IMG/M
3300009540	Active sludge microbial communities from Klosterneuburg, Austria, studying microevolution and ecology of nitrifiers - Klosterneuburg WWTP active sludge metagenome KNB5-Ph	Engineered	Open in IMG/M
3300009607	Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R1_B C13 SIP DNA	Engineered	Open in IMG/M
3300009642	Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R2_B C13 SIP DNA	Engineered	Open in IMG/M
3300009656	Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R1_B C12 SIP DNA	Engineered	Open in IMG/M
3300009666	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC077_MetaG	Engineered	Open in IMG/M
3300009670	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC078_MetaG	Engineered	Open in IMG/M
3300009671	Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R1 time_0 SIP DNA	Engineered	Open in IMG/M
3300009674	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC085_MetaG	Engineered	Open in IMG/M
3300009680	Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R2 time_0 SIP DNA	Engineered	Open in IMG/M
3300009681	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC087_MetaG	Engineered	Open in IMG/M
3300009685	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC033_MetaG	Engineered	Open in IMG/M
3300009693	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC097_MetaG	Engineered	Open in IMG/M
3300009696	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_STIC10_MetaG	Engineered	Open in IMG/M
3300009704	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNHG1_MetaG	Engineered	Open in IMG/M
3300009707	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from China - AD_SCU002_MetaG	Engineered	Open in IMG/M
3300009708	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from China - AD_SCU001_MetaG	Engineered	Open in IMG/M
3300009715	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNAS2_MetaG	Engineered	Open in IMG/M
3300009773	Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R2_B C12 SIP DNA	Engineered	Open in IMG/M
3300009780	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC045_MetaG	Engineered	Open in IMG/M
3300010235	Terrestrial oil reservoir microbial community from Schrader Bluff Formation, Alaska - SB2	Environmental	Open in IMG/M
3300010347	AD_JPHGca	Engineered	Open in IMG/M
3300010351	AD_USPNca	Engineered	Open in IMG/M
3300010353	AD_USCAca	Engineered	Open in IMG/M
3300010355	AD_USDVca	Engineered	Open in IMG/M
3300010356	AD_USDEca	Engineered	Open in IMG/M
3300010365	AD_USDIca	Engineered	Open in IMG/M
3300014203	Groundwater microbial communities from an aquifer near a municipal landfill in Southern Ontario, Canada - Pumphouse #3_1 metaG	Environmental	Open in IMG/M
3300014204	Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 64-88 metaG	Engineered	Open in IMG/M
3300014205	Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 162 metaG	Engineered	Open in IMG/M
3300014206	Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Pumphouse #3 metaG	Engineered	Open in IMG/M
3300015214	Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 138R metaG	Engineered	Open in IMG/M
3300019237	Anaerobic biogas reactor microbial communites from Seattle, Washington, USA - Biogas_R1-A RNA time zero (Metagenome Metatranscriptome)	Engineered	Open in IMG/M
3300020072	Anaerobic biogas reactor microbial communites from Seattle, Washington, USA - Biogas_R2-B RNA time zero (Metagenome Metatranscriptome)	Engineered	Open in IMG/M
3300020812	Anaerobic digester digestate microbial community, University of Toronto, Ontario, Canada - DG074 megahit	Engineered	Open in IMG/M
3300025393	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from China - AD_SCU002_MetaG (SPAdes)	Engineered	Open in IMG/M
3300025677	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNAS2_MetaG (SPAdes)	Engineered	Open in IMG/M
3300025683	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC073_MetaG (SPAdes)	Engineered	Open in IMG/M
3300025708	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC055_MetaG (SPAdes)	Engineered	Open in IMG/M
3300025713	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC077_MetaG (SPAdes)	Engineered	Open in IMG/M
3300025714	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC085_MetaG (SPAdes)	Engineered	Open in IMG/M
3300025737	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC078_MetaG (SPAdes)	Engineered	Open in IMG/M
3300025748	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC087_MetaG (SPAdes)	Engineered	Open in IMG/M
3300025784	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC033_MetaG (SPAdes)	Engineered	Open in IMG/M
3300025856	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC097_MetaG (SPAdes)	Engineered	Open in IMG/M
3300025859	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC034_MetaG (SPAdes)	Engineered	Open in IMG/M
3300025861	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC035_MetaG (SPAdes)	Engineered	Open in IMG/M
3300025871	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC045_MetaG (SPAdes)	Engineered	Open in IMG/M
3300025877	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_STIC10_MetaG (SPAdes)	Engineered	Open in IMG/M
3300026194	Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R1_A C13 SIP DNA (SPAdes)	Engineered	Open in IMG/M
3300026195	Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R1_B C13 SIP DNA (SPAdes)	Engineered	Open in IMG/M
3300026250	Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R1_B C12 SIP DNA (SPAdes)	Engineered	Open in IMG/M
3300026255	Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R2_A C13 SIP DNA (SPAdes)	Engineered	Open in IMG/M
3300028561 (restricted)	Wastewater microbial communities from Lulu Island WWTP, Vancouver, Canada - plant16	Engineered	Open in IMG/M
3300028576 (restricted)	Wastewater microbial communities from Lulu Island WWTP, Vancouver, Canada - plant10	Engineered	Open in IMG/M
3300028601	Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Methane capture system biofilm	Engineered	Open in IMG/M
3300028602	Groundwater microbial communities from a municipal landfill in Southern Ontario, Canada - Pumphouse #3	Environmental	Open in IMG/M
3300028603	Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 138R	Engineered	Open in IMG/M
3300028627	Enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAG_UR_Met	Engineered	Open in IMG/M
3300028638	Enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAG_UR_His	Engineered	Open in IMG/M
3300029440	Biosolids microbial communities from sewage treatment plant in Sweden - SWESTP10 - Uppsala-digested 111	Engineered	Open in IMG/M
3300029942	Biosolids microbial communities from sewage treatment plant in Sweden - SWESTP8 - Uppsala-digested 109	Engineered	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
Draft_101674023	3300001592	Hydrocarbon Resource Environments	KMIATGLLDAITCVMLPSGEADIPECDIARALRAVRGLPVHDWD*
JGI24712J26585_100479197	3300002168	Biogas Fermentantion	TGLLDAITCVMLPSGEADIPECDIDRALRAVRGLPVHDWD*
JGI24712J26585_101038421	3300002168	Biogas Fermentantion	MVTWKQVIERYGEEMAEKMIATGLLDAITCVMLPSGEADIPECDIDRALRAVRGLPVPDWD*
JGI24711J26586_101643411	3300002170	Biogas Fermentantion	LLDAITCVMLPSGEADIPECDIDRALRAVRGLPVHDWD*
JGI24709J26583_100632314	3300002173	Biogas Fermentantion	VTWKQVIERHGEEMAEKMIATGLLDAITCVMLPSGEADIPECDIARALRAVRGLPVHDWD
draft_14157881	3300002596	Hydrocarbon Resource Environments	KMIATGLLDAITCVMLPSGEADIPECDIDRALRAAQGKPVFDWD*
LSCM3L_10290172	3300003667	Coalbed Water	MVTWRQVIERYGEEMAEKMIATGLLDAITCVMLPSGEADIPECDIARALRAVRGLPVYDWD*
Ga0079067_15431244	3300006398	Anaerobic Digestor Sludge	EEGALMVTWRQVIERYGEEMAEKMIATGLLDAITCVMLPSGEADIPECDIARALRAVRGLPVYDWD*
Ga0079074_12466692	3300006596	Anaerobic Digestor Sludge	MVTWRQVIERYGEEMAEKMIATGLLDAITCVMLPSGEADIPECDIARALRAVRGLPVHDWD*
Ga0079065_13573893	3300006600	Anaerobic Digestor Sludge	MVTWKQVIERHGEEMAEKMIATGLLDAITCVMLPSGEADIPECDIARALRAVRGLPVHDWD*
Ga0075464_101117444	3300006805	Aqueous	MVTWKQVIERHGEEMAEKMIATGLLDAITCVMLPSGESDIPECDIARALRAVRGLPVYDWD*
Ga0118671_10502662	3300009121	Anaerobic Wastewater Sludge	MVTWKQVIERHGEEMAEKMIATGLLDAITCVMLPSGEADISECDIARALRAVRGLPVYDWD*
Ga0073899_110881222	3300009540	Activated Sludge	MVTWKQVIERHGEEMAEKMIATGLLDAITCVMLPSGEADIPECDIDRALRAVRGLPVHDWD*
Ga0123327_10523673	3300009607	Anaerobic Biogas Reactor	GEEMAEKMIATGLLDAITCVMLPSGEADIPQCDIDRALRAAQGKPVFDWD*
Ga0123331_10178251	3300009642	Anaerobic Biogas Reactor	EMAEKMIATGLLDAITCVMLPSGEADIPECDIARALRAVRGLPVHDWD*
Ga0123331_10259134	3300009642	Anaerobic Biogas Reactor	MVTWRQVIERYGEEMAEKMIATGLLDAITCVMLPSGEADIPQCDIDRALRAAQGKPVFDWD*
Ga0123331_10870144	3300009642	Anaerobic Biogas Reactor	EMAEKMIATGLLDAITCVMLPSGEADIPECDIARALRAVRGLPVYDWD*
Ga0123331_11243624	3300009642	Anaerobic Biogas Reactor	MVTWKQVIERHGEEMAEKMIATGLLDAITCVMLPSGEADIPECDIARALRA
Ga0123329_10263351	3300009656	Anaerobic Biogas Reactor	GEEMAEKMIATGLLDAITCVMLPSGEADIPECDIARALRAVRGLPVHDWD*
Ga0123329_12281903	3300009656	Anaerobic Biogas Reactor	VMVTWKQVIERHGEEMAEKMIATGLLDAITCVMLPSGEADISECDIARALRAVRGLPVYDWD*
Ga0116182_10918792	3300009666	Anaerobic Digestor Sludge	MVTWKQVIERHGEEMAEKMIATGLLDAITCVMLPSGEADIPECDIDRALRAVRGRPVSDWD*
Ga0116182_12018502	3300009666	Anaerobic Digestor Sludge	MVTWRQVIERYGEEMAEKMIATGLLDAITCVMLPSGEADIPECDIARALRAVRGRPVPDWD*
Ga0116182_13329992	3300009666	Anaerobic Digestor Sludge	MVTWKQVIERHGQEMADRMVATGLLDGITCVRLPSGEADIPQCDIDRALRAVQGKPVFDWD*
Ga0116183_14596712	3300009670	Anaerobic Digestor Sludge	MVTWKQVIERHGEEMAEKMIATGLLDAITCVMLPSGEADIPECDIDRALRAVRGLPV
Ga0123334_14783602	3300009671	Anaerobic Biogas Reactor	EMAEKMIATGLLDAITCVMLPSGEADIPQCDIDRALRAAQGKPVFDWD*
Ga0116173_10571254	3300009674	Anaerobic Digestor Sludge	MVTWKQVIERHGEEMAEKMIATGLLDAITCVMLPSGEADIPECDIARALRAVRGLPVYDWD*
Ga0123335_12050731	3300009680	Anaerobic Biogas Reactor	EKMIATGLLDAITCVMLPSGEADIPECDIARALRAVRGLPVYDWD*
Ga0116174_104461651	3300009681	Anaerobic Digestor Sludge	ATGLLDAITCVMLPSGEADIPECDIARALRAVRGRPVPDWD*
Ga0116142_105179273	3300009685	Anaerobic Digestor Sludge	LDAITCVMLPSGEADIPECDIARALRAVRGLPVYDWD*
Ga0116141_101624821	3300009693	Anaerobic Digestor Sludge	MAEKMIATGLLDAITCVMLPSGEADIPECDIARALRAVRGLPVPDWD*
Ga0116141_103674091	3300009693	Anaerobic Digestor Sludge	MVTWKQVIERHGEEMAEKMIATGLLDAITCVMLPSGEADIPECDIARALRAVRG
Ga0116141_105240081	3300009693	Anaerobic Digestor Sludge	MAEKMIATGLLDAITCVMLPSGEADIPECDIARALRAVRGLPVHDWD*
Ga0116177_100986674	3300009696	Anaerobic Digestor Sludge	GDHDHARPPSTEEGALMVTWRQVIERYGEEMAEKMIATGLLDAITCVMLPSGEADIPECDIARALRAVRGLPVYDWD*
Ga0116145_11311051	3300009704	Anaerobic Digestor Sludge	MVTWKQVIERYGEEMAEKMIATGLLDAITCVMLPSGEADIPECDIARALRAVRGLPVHDWD*
Ga0116195_100086135	3300009707	Anaerobic Digestor Sludge	MVTWKQVIERHGADLAEKMVATGLLDGITCVLLPSGEADIPQCDIDRALRAVRGLPVHDWD*
Ga0116195_10720141	3300009707	Anaerobic Digestor Sludge	MVTWKQVIERHGQEMADRMVATGLLDGITCVMLPSGEADIPQCDIDRALRA
Ga0116194_10211731	3300009708	Anaerobic Digestor Sludge	GFAPAPEDPLMVTWKQVIERHGQEMADRMVATGLLDGITCVMLPSGEADIPQCDIDRALRAAQGKPVFDWD*
Ga0116160_10764653	3300009715	Anaerobic Digestor Sludge	MVTWKQVIERHGEEMAEKMIATGLLDAITCVMLPSGEADIPECDIDRALRAAQGKPVFDWD*
Ga0123333_103056771	3300009773	Anaerobic Biogas Reactor	IERHGEEMAEKMIATGLLDAITCVMLPSGEADIPECDIDRALRAVRGLPVPDWD*
Ga0116156_100641907	3300009780	Anaerobic Digestor Sludge	EKMIATGLLDAITCVMLPSGEADIPECDIARALRAVRGLPVHDWD*
Ga0136247_100404643	3300010235	Produced Fluid	EGDRGHAPLPGHEEGSVMVTWKQVIERYGEEMAEKMIATGLLDAITCVMLPSGEADIPECDIARALRAVRGLPVHDWD*
Ga0116238_102962302	3300010347	Anaerobic Digestor Sludge	MVTWKQVIERYGEEMAEKMIATGLLDAITCVMLPSGEADIPECDIDRALRAVRGLPVHDWD*
Ga0116248_108305381	3300010351	Anaerobic Digestor Sludge	EEMAEKMIATGLLDAITCVMLPSGEADIPECDIARALRAVRGRPVPDWD*
Ga0116236_100608284	3300010353	Anaerobic Digestor Sludge	MVTWRQVIERHGEEMAEKMIATGLLDAITCVMLPSGEADIPECDIDRALRAVRGLPVPDWD*
Ga0116236_100991181	3300010353	Anaerobic Digestor Sludge	HGEEMAEKMIATGLLDAITCVMLPSGEADIPECDIARALRAVRGLPVHDWD*
Ga0116242_107264171	3300010355	Anaerobic Digestor Sludge	MVTWQQVIERHGQEMADRMVATGLLDAITCVMLPSGEADIPQCDIDRALRAV
Ga0116237_100597871	3300010356	Anaerobic Digestor Sludge	EEMAEKMIATGLLDAITCVMLPSGEADIPECDIARALRAVRGLPVYDWD*
Ga0116237_101764066	3300010356	Anaerobic Digestor Sludge	EEMAEKMIATGLLDAITCVMLPSGEADIPECDIARALRAVRGLPVHDWD*
Ga0116237_109356952	3300010356	Anaerobic Digestor Sludge	MVTWKQVIERHGEEMAEKMIATGLLDAITCVMLPSGEADIPECDIDRALRAVRGLPVPDWD*
Ga0116251_101433011	3300010365	Anaerobic Digestor Sludge	EKMIATGLLDAITCVMLPSGEADIPECDIDRALRAVRGLPVHDWD*
Ga0116251_102869853	3300010365	Anaerobic Digestor Sludge	EKMIATGLLDAITCVMLPSGEADIPECDIDRALRAVRGLPVPDWD*
Ga0172378_101784182	3300014203	Groundwater	MVTWRQVIERYGEEMAEKMIATGLLDAITCVMLPSGEADIPQCDIARALRAVRGLPVHDWD*
Ga0172378_102767172	3300014203	Groundwater	MVTWKQVIERYGEEMAEKMIATGLLDAITCVMLPSGEADIPECDIARALRAVRGLPVYDWD*
Ga0172378_103451324	3300014203	Groundwater	MVTWQQVIERHGQEMADRMVATGLLDGITCVRLPSGEADIPQCDIDRALRAVQGKPVFDWD*
Ga0172381_100153614	3300014204	Landfill Leachate	MVTWKQVVVEYGQEMCDKMIATGYLDAITVVRLPSGEADIPQIDIERAYRAANGRTVHDWD*
Ga0172381_100994007	3300014204	Landfill Leachate	MPTWKQVVEKYGQEMSDKMADTGLLDAITCVMTPAGEADIPQCDIDLAYRAANGGEIRGWDWD*
Ga0172381_104951551	3300014204	Landfill Leachate	MVATGLLDGITCVRLPSGEADIPQCDIDRALRAAQGKRVFDWD*
Ga0172381_112911522	3300014204	Landfill Leachate	MVTWKQVIERHGQEMADRMVATGLLDGITCVMLPSGEADIPECDIDRALRAVQGKPVFDWD*
Ga0172380_104456822	3300014205	Landfill Leachate	MVTWQQVIERHGQEMADRMVATGLLDGITCVMLPSGEGDIPQCDIDRALRAVRGLPVPDWD*
Ga0172377_103626011	3300014206	Landfill Leachate	QEMADRMVATGLLDGITCVRLPSGEADIPQCDIDRALRAVQGKPVFDWD*
Ga0172377_105216363	3300014206	Landfill Leachate	MVTWQQVIERHGQEMADRMVATGLLDGITCVMLPSGEADIPECDIDRALRAVQGKPVFDWD*
Ga0172382_106844241	3300015214	Landfill Leachate	TGLLDAITCVMLPSGEADIPECDIARALRAVRGLPVPDWD*
Ga0172382_110874561	3300015214	Landfill Leachate	MVTWKQVIERHGQEMADRMVATGLLDGITCVMLPSGEADIPQCDIDRALRAAQGKPV
Ga0180028_13163411	3300019237	Anaerobic Biogas Reactor	VTWRQVIERYGEEMAEKMIATGLLDAITCVMLPSGEADIPECDIARALRAVRGLPVHDWD
Ga0180031_10522042	3300020072	Anaerobic Biogas Reactor	MVTWRQVIERYGEEMAEKMIATGLLDAITCVMLPSGEADIPQCDIDRALRAAQGKPVFDW
Ga0214071_14177253	3300020812	Anaerobic Digester Digestate	MVTWKQVIERHGEEMAEKMIATGLLDAITCVMLPSGEADIPECDIDRALRAVRGLPVPDW
Ga0208041_100051878	3300025393	Anaerobic Digestor Sludge	MVTWKQVIERHGADLAEKMVATGLLDGITCVLLPSGEADIPQCDIDRALRAVRGLPVHDW
Ga0209719_10374622	3300025677	Anaerobic Digestor Sludge	MVTWRQVIERYGEEMAEKMIATGLLDAITCVMLPSGEADIPECDIARALRAVRGLPVHDW
Ga0209719_10937662	3300025677	Anaerobic Digestor Sludge	MAEKMIATGLLDAITCVMLPSGEADIPECDIDRALRAAQGKPVFDWD
Ga0208564_101423312	3300025683	Anaerobic Digestor Sludge	EGALMVTWRQVIERYGEEMAEKMIATGLLDAITCVMLPSGEADIPECDIARALRAVRGLPVHDWD
Ga0209201_10342894	3300025708	Anaerobic Digestor Sludge	MVTWKQVIERHGEEMAEKMIATGLLDAITCVMLPSGEADIPECDIARALRAVRGLPVYDW
Ga0208195_10737692	3300025713	Anaerobic Digestor Sludge	MVTWKQVIERHGEEMAEKMIATGLLDAITCVMLPSGEADIPECDIDRALRAVRGRPVSDW
Ga0208458_10977524	3300025714	Anaerobic Digestor Sludge	EMAEKMIATGLLDAITCVMLPSGEADIPECDIARALRAVRGLPVYDWD
Ga0208458_12426372	3300025714	Anaerobic Digestor Sludge	MVTWKQVIERHGEEMAEKMIATGLLDAITCVMLPSGEADIPECDIARALRAVRGRPVP
Ga0208694_10492282	3300025737	Anaerobic Digestor Sludge	MVTWKQVIERHGEEMAEKMIATGLLDAITCVMLPSGEADIPECDIDRALRAVRGLPVHDW
Ga0208694_11219114	3300025737	Anaerobic Digestor Sludge	DAITCVMLPSGEADIPECDIDRALRAVRGLPVPDWD
Ga0208459_10336475	3300025748	Anaerobic Digestor Sludge	MVTWKQVIERHGEEMAEKMIATGLLDAITCVMLPSGEADIPECDIARALRAVRGRPVPDW
Ga0209200_10879484	3300025784	Anaerobic Digestor Sludge	MVTWKQVIERHGEEMAEKMIATGLLDAITCVMLPSGEADIPECDIARALRAV
Ga0209200_12731771	3300025784	Anaerobic Digestor Sludge	LLDAITCVMLPSGEADIPECDIARALRAVRGLPVYDWD
Ga0209604_12458951	3300025856	Anaerobic Digestor Sludge	ERHGEEMAEKMIATGLLDAITCVMLPSGEADIPECDIDRALRAVRGLPVPDWD
Ga0209604_13000702	3300025856	Anaerobic Digestor Sludge	EMAEKMIATGLLDAITCVMLPSGEADIPECDIARALRAVRGLPVHDWD
Ga0209096_11034324	3300025859	Anaerobic Digestor Sludge	DAITCVMLPSGEADIPECDIARALRAVRGLPVYDWD
Ga0209605_11741461	3300025861	Anaerobic Digestor Sludge	GALMVTWRQVIERYGEEMAEKMIATGLLDAITCVMLPSGEADIPECDIARALRAVRGLPVYDWD
Ga0209605_11892233	3300025861	Anaerobic Digestor Sludge	AEKMIATGLLDAITCVMLPSGEADIPECDIARALRAVRGLPVHDWD
Ga0209311_13058911	3300025871	Anaerobic Digestor Sludge	EKMIATGLLDAITCVMLPSGEADIPECDIARALRAVRGLPVHDWD
Ga0209311_13273221	3300025871	Anaerobic Digestor Sludge	TGLLDAITCVMLPSGEADIPECDIARALRAVRGRPVPDWD
Ga0208460_103340092	3300025877	Anaerobic Digestor Sludge	EEMAEKMIATGLLDAITCVMLPSGEADIPECDIARALRAVRGLPVYDWD
Ga0209509_10080784	3300026194	Anaerobic Biogas Reactor	MVTWKQVIERHGEEMAEKMIATGLLDAITCVMLPSGEADISECDIARALRAVRGLPVYDW
Ga0209312_100332321	3300026195	Anaerobic Biogas Reactor	SVMVTWKQVIERHGEEMAEKMIATGLLDAITCVMLPSGEADIPECDIARALRAVRGLPVHDWD
Ga0209612_100957412	3300026250	Anaerobic Biogas Reactor	GEEMAEKMIATGLLDAITCVMLPSGEADIPECDIARALRAVRGLPVHDWD
Ga0209612_10337221	3300026250	Anaerobic Biogas Reactor	ERYGEEMAEKMIATGLLDAITCVMLPSGEADIPQCDIDRALRAAQGKPVFDWD
Ga0209613_100374521	3300026255	Anaerobic Biogas Reactor	EEMAEKMIATGLLDAITCVMLPSGEADIPECDIARALRAVRGLPVHDWD
(restricted) Ga0255343_12037571	3300028561	Wastewater	GEEMAEKMIATGLLDAITCVMLPSGEADIPECDIARALRAVRGLPVYDWD
(restricted) Ga0255340_12147042	3300028576	Wastewater	MVTWRQVIERHGEEMAEKMIATGLLDAITCVMLPSGEADIPECDIARALRAVRGLPVYDW
Ga0265295_12806582	3300028601	Landfill Leachate	MVTWKQVIERHGEEMAEKMIATGLLDAITCVMLPSGEADIPECDIDRALRAVRGRPV
Ga0265294_100178277	3300028602	Groundwater	VVTWKQVVEKHGQEMADEMIATGLLDGITVTRHPSGEFDIPERDIRRAYHAALGQRSRRK
Ga0265294_100679836	3300028602	Groundwater	MVTWKQVIERHGQEMADRMVATGLLDGITCVRLPSGEADIPQCDIDRALRAVQGKPVFDW
Ga0265294_101458494	3300028602	Groundwater	MVTWQQVIERHGQEMADRMVATGLLDGITCVRLPSGEADIPQCDIDRALRAVQGKPVFDW
Ga0265294_102650242	3300028602	Groundwater	MVTWKQVIERHGEEMAEKMIATGLLDAITCVMLPSGEADIPQCDIDRALRAVRGLPVYDW
Ga0265294_103093592	3300028602	Groundwater	MVTWKQVVVEYGQEMCDKMIATGYLDAITVVRLPSGEADIPQIDIERAYRAANGRTVHDW
Ga0265294_103229353	3300028602	Groundwater	MVTWQQVIERHGQEMADRMVATGLLDGITCVMLPSGEGDIPQCDIDRALRAVRGLPVPDW
Ga0265294_105374832	3300028602	Groundwater	MVTWKQVIERHGEEMAEKMIATGLLDAITCVMLPSGEADIPECDIARALRAVRGLPVPDW
Ga0265294_106797251	3300028602	Groundwater	EEGSVMVTWKQVIERYGEEMAEKMIATGLLDAITCVMLPSGEADIPECDIDRALRAVRGLPVPDWD
Ga0265293_1001686619	3300028603	Landfill Leachate	MVTWKQVIERYGEEMAEKMIATGLLDAITCVMLPSGEADIPECDIDRALRAVRGLPVPDW
Ga0302243_10738261	3300028627	Activated Sludge	EEGALMVTWRQVIERYGEEMAEKMIATGLLDAITCVMLPSGEADIPECDIARALRAVRGLPVHDWD
Ga0302240_11152582	3300028638	Activated Sludge	PGPEEGALMVTWRQVIERYGEEMAEKMIATGLLDAITCVMLPSGEADIPECDIARALRAVRGLPVHDWD
Ga0167329_10104751	3300029440	Biosolids	MVTWRQVIERYGEEMAEKMIATGLLDAITCVMLPSGEADIPQCDIARALRAVRGLPVYDW
Ga0168096_10058281	3300029942	Biosolids	MVTWKQVIEEYGEDLAEQMIATGLLDAITCVMLPSGEADIPQCDIARALRAVRGLPVYDW

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters