Metagenome Family F090563

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F090563
Family Type	Metagenome
Number of Sequences	108
Average Sequence Length	38 residues
Representative Sequence	KRILKFTLKQLLHVSVQSPSSGSVLFELAKVIVIKIIS
Number of Associated Samples	17
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	8.33 %
% of genes from short scaffolds (< 2000 bps)	12.96 %
Associated GOLD sequencing projects	12
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.44

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (100.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut (97.222 % of family members)
Environment Ontology (ENVO)	Unclassified (100.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal proximal gut (100.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 46.97% β-sheet: 0.00% Coil/Unstructured: 53.03%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.44
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.44
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF00078	RVT_1	1.85
PF02535	Zip	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG0428	Zinc transporter ZupT	Inorganic ion transport and metabolism [P]	0.93

Phylogeny

NCBI Taxonomy

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	100.00 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001544\|JGI20163J15578_10248929	Not Available	1148	Open in IMG/M
3300001544\|JGI20163J15578_10404049	Not Available	869	Open in IMG/M
3300001544\|JGI20163J15578_10448172	Not Available	815	Open in IMG/M
3300001544\|JGI20163J15578_10739977	Not Available	573	Open in IMG/M
3300002125\|JGI20165J26630_10264104	Not Available	835	Open in IMG/M
3300002125\|JGI20165J26630_10277518	Not Available	819	Open in IMG/M
3300002125\|JGI20165J26630_10450987	Not Available	666	Open in IMG/M
3300002175\|JGI20166J26741_12269325	Not Available	586	Open in IMG/M
3300002501\|JGI24703J35330_11694215	Not Available	1942	Open in IMG/M
3300002508\|JGI24700J35501_10526015	Not Available	828	Open in IMG/M
3300002508\|JGI24700J35501_10585276	Not Available	914	Open in IMG/M
3300006226\|Ga0099364_10624089	Not Available	1073	Open in IMG/M
3300027891\|Ga0209628_10435901	Not Available	1343	Open in IMG/M
3300027960\|Ga0209627_1016934	Not Available	1316	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	100.00%

Habitat	Taxonomy	Distribution
Arthropoda	Host-Associated → Arthropoda	100.00%

Habitat	Taxonomy	Distribution
Digestive System	Host-Associated → Arthropoda → Digestive System	100.00%

Habitat	Taxonomy	Distribution
Gut	Host-Associated → Arthropoda → Digestive System → Gut	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified	97.22%
Proctodeal Segment	Host-Associated → Arthropoda → Digestive System → Gut → Proctodeal Segment	2.78%

Habitat	Taxonomy	Distribution
Termite Gut	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut	97.22%
Termite Gut	Host-Associated → Arthropoda → Digestive System → Gut → Proctodeal Segment → Termite Gut	2.78%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001544	Cubitermes ugandensis P1 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P1	Host-Associated	Open in IMG/M
3300002125	Cubitermes ugandensis P4 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P4	Host-Associated	Open in IMG/M
3300002127	Cubitermes ugandensis P3 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P3	Host-Associated	Open in IMG/M
3300002175	Cubitermes ugandensis P5 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P5	Host-Associated	Open in IMG/M
3300002185	Cubitermes ugandensis P1 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P1	Host-Associated	Open in IMG/M
3300002462	Microcerotermes parvus P4 segment gut microbial communities from Pointe-Noire, Republic of the Congo - Th196 P4	Host-Associated	Open in IMG/M
3300002469	Microcerotermes parvus P3 segment gut microbial communities from Pointe-Noire, Republic of the Congo - Th196 P3	Host-Associated	Open in IMG/M
3300002501	Neocapritermes taracua P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Nt197 P1	Host-Associated	Open in IMG/M
3300002508	Microcerotermes parvus P1 segment gut microbial communities from Pointe-Noire, Republic of the Congo - Th196 P1	Host-Associated	Open in IMG/M
3300006226	Microcerotermes parvus P3 segment gut microbial communities from Pointe-Noire, Republic of the Congo - Th196 P3	Host-Associated	Open in IMG/M
3300009784	Embiratermes neotenicus P4 segment gut microbial communities from Petit-Saut dam, French Guiana - Emb289 P4	Host-Associated	Open in IMG/M
3300010162	Labiotermes labralis P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Lab288 P1 (version 2)	Host-Associated	Open in IMG/M
3300027558	Cubitermes ugandensis crop segment gut microbial communities from Kakamega Forest, Kenya - Cu122C (SPAdes)	Host-Associated	Open in IMG/M
3300027891	Cubitermes ugandensis P4 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P4 (SPAdes)	Host-Associated	Open in IMG/M
3300027904	Cubitermes ugandensis P3 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P3 (SPAdes)	Host-Associated	Open in IMG/M
3300027960	Cubitermes ugandensis midgut segment microbial communities from Kakamega Forest, Kenya - Cu122M (SPAdes)	Host-Associated	Open in IMG/M
3300027984	Cubitermes ugandensis P5 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P5 (SPAdes)	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI20163J15578_102162621	3300001544	Termite Gut	MHNRVALKEILKFTLKHLLHVSVKSPSSGSVLFELAKVIVIKIIS*
JGI20163J15578_102489294	3300001544	Termite Gut	ILKFTLKHLLHVSVQLPSSGSALFGLDKVTVVKIID*
JGI20163J15578_103625052	3300001544	Termite Gut	RILKFTLKELLHVLVQSPSSGSVLFELAKVIVIKIIS*
JGI20163J15578_104040493	3300001544	Termite Gut	LQRILKFTLKQLLHVSVQSPSSGSALFELAKLIVVRIVN*
JGI20163J15578_104481723	3300001544	Termite Gut	MHKRIALKILKHTLKQLLHVSVQSPSSGSVLFELAKVIVIK
JGI20163J15578_105024001	3300001544	Termite Gut	LKKILKFTLKQLLHVSVQSPSSGSVLFELAKVIVI
JGI20163J15578_106454351	3300001544	Termite Gut	KFTLKQLLHVSVQSPSSGSVLFELAKVVVVKIFS*
JGI20163J15578_106554591	3300001544	Termite Gut	FKRILKFTLKQLLHVSVQSPSSGSVLFELAKVIVVKIIS*
JGI20163J15578_106819851	3300001544	Termite Gut	MLKFALKQLLHVSVQSPSSGRVLFELAEVIVVKIIS*
JGI20163J15578_107399772	3300001544	Termite Gut	MHGEIMKLKFTLKQLLNVSVQSPSSGSVLFELAKVKFTKIIS*
JGI20163J15578_107575891	3300001544	Termite Gut	KFTLKQLLHASVQLPPSGSVLFELAKDIVIKIIS*
JGI20163J15578_107593281	3300001544	Termite Gut	FKRILKFTLKQLLHVSVQSPSSGSVLFELAKVIVIKIIS*
JGI20163J15578_108654571	3300001544	Termite Gut	LKRMLKFTLKQLLHVSVQSPSSGSALFQLAKVVVV
JGI20163J15578_108793422	3300001544	Termite Gut	RILKFTLKQLLHVSVQSPSSGSVLFELAKVMVVQIIC*
JGI20165J26630_100174574	3300002125	Termite Gut	MLKFTLKEFLHVSVQSPSSGSVLFELNKVIVAKLIS*
JGI20165J26630_100365192	3300002125	Termite Gut	RILKFTIKQLLHVSVQSPSSGSISFEFAKVIVIKIIS*
JGI20165J26630_101148082	3300002125	Termite Gut	MLKYTLKQLLHVSVQSPSSGGVLFELAEVIIIKIIG*
JGI20165J26630_102641043	3300002125	Termite Gut	MHKSVALKRILKFTLKQLLHVSVQSPSSGSVLFELAKVIITKTVS*
JGI20165J26630_102775181	3300002125	Termite Gut	MHMRTALKRILKFTLKPLLQFSVQSPSSGSALFELAKVIVVNIIN*
JGI20165J26630_103468802	3300002125	Termite Gut	RILKFTLKQLLHVSVQSPSSGSILFELAKVTVITIIG*
JGI20165J26630_104509871	3300002125	Termite Gut	MHNRAALKKLLKFTLKQLLHFSVQSPSSGSVLFELAKVI
JGI20165J26630_104542981	3300002125	Termite Gut	ILKFTLKQLLHVSVQSPSSGSVLFELAKVVVVKIFS*
JGI20165J26630_105501742	3300002125	Termite Gut	LKFTLKQLLHVSVQSPSSGSVLFELAKITVIKIIS*
JGI20165J26630_105719421	3300002125	Termite Gut	KKILKFTFKQFLQVSWQPPSSGSALFELAKVISVKIID*
JGI20165J26630_105859172	3300002125	Termite Gut	LKFTLKQLLHVSVQSPSSGSVLFELAKVIVVQIIG*
JGI20165J26630_108146172	3300002125	Termite Gut	KFTLKQLLHVSVQSPSSGSVLFELAKVIVVKIIS*
JGI20164J26629_103407901	3300002127	Termite Gut	KFTLKQLQHVSVQSPSSGSVLFELPKVIVIKIIDAF*
JGI20164J26629_103946112	3300002127	Termite Gut	RILKFTLKQLLHVSVQSPSSWSVLFELAKVIVIKIIS*
JGI20166J26741_102370941	3300002175	Termite Gut	FKRILKFTLKQLLHVSVQSPSSGSVLFELAKVIAITIIS*
JGI20166J26741_103959271	3300002175	Termite Gut	KFTLKQLLHVSVQSPSSGSVLFELAKVIVIKIIF*
JGI20166J26741_114487705	3300002175	Termite Gut	KFTLKQLLHVSVQSPSSGSVLFELAKVTVIKIIG*
JGI20166J26741_115253781	3300002175	Termite Gut	FKRILKFTLKQLLHVSFQSPSSGSVLFELAKVIVVKIIS*
JGI20166J26741_116841253	3300002175	Termite Gut	FKRILKFTLKQLLHVSVQSSSSGSVLFELAKVIAIKIIS*
JGI20166J26741_117327501	3300002175	Termite Gut	CFKRILKFTLKQLLHVSVQSPSSGSVLFELAKVTVIKIIS*
JGI20166J26741_117488461	3300002175	Termite Gut	MHNRITFKRILKFTLKQLLHVSVQSPSSGSVLFELAKVI
JGI20166J26741_118239741	3300002175	Termite Gut	FKRILKFTLKQLLHVSVQSPSSGSVLFELAKVTVIKIIS*
JGI20166J26741_118246501	3300002175	Termite Gut	FKRILKFTLKQLLHVSVQSPSSRSVLFELAKVIAIKIIV*
JGI20166J26741_119854541	3300002175	Termite Gut	KFTLKQLLHVSVQSPSSGSVLFELAKVMVIKIII*
JGI20166J26741_119856032	3300002175	Termite Gut	FKRILKFTLKQLLHVSVQSQSSGSVLFELAKVIGIKIIS*
JGI20166J26741_120311636	3300002175	Termite Gut	KFTLKQLLHVSVQSPSSGSALFELAKVIVVKIIS*
JGI20166J26741_120851272	3300002175	Termite Gut	MAQYSCFKRILKFTLKQLLHVSVQSPSSGSVLFELATVI
JGI20166J26741_120943382	3300002175	Termite Gut	KFTLKQLLHVSVQSPSSGSVLFELAKVIVIKIIS*
JGI20166J26741_121414272	3300002175	Termite Gut	KRILKFTLKQLLHVSVQSPSSGSVLFELAKVMVVQIIC*
JGI20166J26741_121555822	3300002175	Termite Gut	LKFTLKQLLHVSVQSPSSGSVLFELAKVIVIKIFR*
JGI20166J26741_122168221	3300002175	Termite Gut	SCFKRILKFTLKQLLHVSVQSPSSGSILFELAKGIVIKIIS*
JGI20166J26741_122693251	3300002175	Termite Gut	MHKRIALKRILKFTLKRLLHVSVQSPSSGSVLFELAKVIV
JGI20163J26743_104682712	3300002185	Termite Gut	KFTSKQLLHVSVQSPSSGSALFELAKVIVVKIIN*
JGI20163J26743_105787131	3300002185	Termite Gut	ILKFTLKQLLHVSVQSPSSGSVLSELAKVIVIKIIS*
JGI20163J26743_111940201	3300002185	Termite Gut	MHNRITFKRILKFTLKQLLHVSVQSPSSGSVLFELAKVIV
JGI24702J35022_104777171	3300002462	Termite Gut	MLKFTLKQLLHVSVQSSSSGSVLFELAKVIIVKKSVKIHH
JGI24702J35022_105389842	3300002462	Termite Gut	LKRMLKFTLKQFPHVSVQSSLSGSTLIELAKVIVVKIIC*
JGI24702J35022_108693042	3300002462	Termite Gut	PQESCFKRILKFALKQLLHVSVQSLSSGKVFFDLAKVMMIKIIN*
JGI24701J34945_101719242	3300002469	Termite Gut	DAQYSCFKRILKFTLKQLLHVSVXSPXSGXXLFELAKVIVIKIIS*
JGI24703J35330_111424911	3300002501	Termite Gut	TLKFTLKQLQRVSVQSPSSGSVSFELAKVTVVIIVNNHTDVF*
JGI24703J35330_116942151	3300002501	Termite Gut	MHKRIALKRILKFTLKQILHVSVLSPSSGSVLFELAEVTVVKIIN*
JGI24700J35501_103671771	3300002508	Termite Gut	FKRILKFTLKQLLHVSVQSPSSGSVLFELAKVVVIKIIS*
JGI24700J35501_103724222	3300002508	Termite Gut	FKRILKFTLKQLLQVSVQSPSPGSVLFELAKVIVIKIIS*
JGI24700J35501_105260152	3300002508	Termite Gut	MHNRVALKRILKFTLKQLQHVSAQSPSSGSVLFEFAKVTITKIIS*
JGI24700J35501_105688751	3300002508	Termite Gut	FKRILKFTLKQLLHVSVQSPSSGSVLFELAKVTAVKIVHYNISVCG*
JGI24700J35501_105852761	3300002508	Termite Gut	MHNRVALKEYYNTLKQLLHVSVQSPSSGSVLFELAKVIVIKII
JGI24700J35501_106380111	3300002508	Termite Gut	CFKRILKFTLKQLLHVSVQSPSSGSVLFELAKDIVIKIIS*
JGI24700J35501_108059151	3300002508	Termite Gut	LIKRILKFALKQLLHVSVQSSSSGSVLFELAKVIVIKIIS
JGI24700J35501_108195246	3300002508	Termite Gut	FKRILKFTLKQLLHVSVQSPATDSVLFDLAKVIVIKIIS*
JGI24700J35501_109158008	3300002508	Termite Gut	FKRILKFTLKQLLHVLVQSPSSGSILFELAKVTVIKIIS*
Ga0099364_101053541	3300006226	Termite Gut	YFKRILKFTLKQLLNVSVQSPSSGSVFFELAKVTVIKIIS*
Ga0099364_101867302	3300006226	Termite Gut	MHKRIAVKRILKFTLKQLLHVLVKSPSSGSAFELAKFIVVKIIN*
Ga0099364_102557664	3300006226	Termite Gut	FKRILKFTLKQLLLVSVQSPSSGNALFEFAKVIIIKIIS*
Ga0099364_104014571	3300006226	Termite Gut	MHNKVALKVLKFTLKQLLHVSVQSPSSGSVLFELAKVIVIKV
Ga0099364_104186974	3300006226	Termite Gut	LKFTLKQLLHVSVQSSKSLSVLFDLAKFTVVKIIIDN*
Ga0099364_104830132	3300006226	Termite Gut	FKRILKFTLKQLLHVSVQSPSLGSVLFELAKVIVIKIIS*
Ga0099364_105411242	3300006226	Termite Gut	FKRILKFTLKQLLHVSVQSPSPGSVLFELAKVIVVKIIC*
Ga0099364_106240894	3300006226	Termite Gut	MHNRVALKRILKFTLKQLLHVSVQSPSSGSVLFELAKV
Ga0099364_107753731	3300006226	Termite Gut	MLKFTLKQLLHVSVQSPSSGSALFELAKVIVVKIIC*
Ga0099364_107860111	3300006226	Termite Gut	LKFTLKQLLQVSVQSLSSGSILFELAEVIVIKIIS*
Ga0123357_100633665	3300009784	Termite Gut	MEEGNFHFFTLKQLQRVSVQPPSGSALFELAKVTVVKIMN*
Ga0131853_101575791	3300010162	Termite Gut	TVLNFTLKQLLHVSVQSPSSGTILFEHAKVTVVKIIN*
Ga0209531_100467531	3300027558	Termite Gut	LKFTLKELLHVLVQSPSSGSIFFELAKVIIIKIIS
Ga0209531_102265391	3300027558	Termite Gut	FKRILKFRLKQLLHVSVQSPSSGSVLFELAKVIFIKIII
Ga0209628_101678332	3300027891	Termite Gut	ILKFTSKQLLHVSVQSPSSGSVLFELAKVIVIKIIS
Ga0209628_102398641	3300027891	Termite Gut	KRILKFTLKQLLHVSVQSPSSGSVLFELAKVIVIKIIS
Ga0209628_102567431	3300027891	Termite Gut	CFRRILKFTLKHLLHVSVQSPSSGSVLFELAKVIVIKIIS
Ga0209628_102866301	3300027891	Termite Gut	SCFKIILKFTLKQLLHVSVQSPSSGSVLFELAKVIVIKIIS
Ga0209628_103999763	3300027891	Termite Gut	KKILKFSLKQLLHVSVQSPSSGSVLFELAKVIVIKIIS
Ga0209628_104359011	3300027891	Termite Gut	FKRILKFTLKQLLHVSVQLPSSGSVLSELAKVIVIKIIS
Ga0209628_104682571	3300027891	Termite Gut	LGVKWLKQLLHVSVQSPSSGSVLFELAKVIVIKIIS
Ga0209628_105346451	3300027891	Termite Gut	MLKFALKQLLHVSVQSPSSGRVLFELAEVIVVKIIS
Ga0209628_105821641	3300027891	Termite Gut	MLKFTLKQLLHVSVQSPSSGSALFELAKVIVVKIMRSL
Ga0209628_105907732	3300027891	Termite Gut	MLKFTLKQLLHVSVQSPSAGSVLFELAKVIVIKII
Ga0209628_107620011	3300027891	Termite Gut	FKRILKFTLKQILHVSVQSPSSGSVFFELAKVIIIKIIS
Ga0209628_110168611	3300027891	Termite Gut	CFKRILKFTLKQLLHVSVQSPSSGSVLFELATDIVIKIIS
Ga0209628_110978291	3300027891	Termite Gut	MLKFTLKQLLHVSVQSPSSGSVLFELAKVIVIKII
Ga0209628_112032411	3300027891	Termite Gut	RILKFTLKQLLHVSVQSPSSGSILFELAKVIVIKIIS
Ga0209737_103660171	3300027904	Termite Gut	LKFTLKQLLHVSVQSPSSGSVLFELAKIIVIKTIS
Ga0209737_103792511	3300027904	Termite Gut	CFKRILKFTLKQLLHVSVQSPSSGSVLFELAKVIVIKIVS
Ga0209737_104399481	3300027904	Termite Gut	ILKYTSKQLLHVSVQSPSSGSVLFGLAKVTVIKISS
Ga0209737_105986711	3300027904	Termite Gut	RILKFTLKQLLHVSVQSPSSGSVLFELAKVIVIKIIS
Ga0209737_106491331	3300027904	Termite Gut	MHNRITFKRILKFTLKQLLHVSVQSPSSGSVLFELAKVMVIKIIS
Ga0209737_107266322	3300027904	Termite Gut	ILKFTLKQLLHVSVQSPSSGRVLFELAKVIVIKIIS
Ga0209737_108501101	3300027904	Termite Gut	LKFTLKQLLHVSVQSPSSGSVLFELAKVVVIKIIS
Ga0209737_112339541	3300027904	Termite Gut	ILKFALKQLLHVSVPSPSSGSVLFELIKVIVIKIIS
Ga0209737_117121401	3300027904	Termite Gut	LKFTLKQLLLVSVQSPSSGSVLFELAKVIVIKIIS
Ga0209627_10169341	3300027960	Termite Gut	KRILKFTLKQLLHVSVQSPSSGSALFELAKVIVVKMIN
Ga0209627_10325821	3300027960	Termite Gut	CFESILKFTLKQLLHVSVQSPSSGSVLFEFAKVIVIKIIS
Ga0209627_12539411	3300027960	Termite Gut	KRILKFTLKQLLHVSVQSPSSGSVLFELTKVIVIKIIS
Ga0209627_13166882	3300027960	Termite Gut	MLKFTLKQLLHVSVQSPSSGNLLFELAKVLVVKII
Ga0209629_103527281	3300027984	Termite Gut	MVKRILKFTLKQLLHVSVQSPLSGSVLFELAKVIVIKII
Ga0209629_105742211	3300027984	Termite Gut	KKILKFTLKRLLHVSVQSPSSESVLFEFAKVIVIKIIS
Ga0209629_108855821	3300027984	Termite Gut	FKRILKFTLKQLLHVSVQSPSSGSLLFELAKVIVIKIIS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F090563

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences