Metagenome / Metatranscriptome Family F090628

Basic Information
Family ID	F090628
Family Type	Metagenome / Metatranscriptome
Number of Sequences	108
Average Sequence Length	59 residues
Representative Sequence	EWIVNDIVDDVVISAAFGPWYNLIDGPPRLAHERFYWSRESNKLGVGLGV
Number of Associated Samples	92
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	100.00 %
% of genes near scaffold ends (potentially truncated)	0.00 %
% of genes from short scaffolds (< 2000 bps)	0.00 %
Associated GOLD sequencing projects	90
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.25

Most Common Taxonomy
Group	Unclassified (99.074 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (27.778 % of family members)
Environment Ontology (ENVO)	Unclassified (35.185 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (62.037 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 16.67% β-sheet: 12.82% Coil/Unstructured: 70.51%
Feature Viewer

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Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF00196	GerE	59.26
PF02518	HATPase_c	3.70
PF07730	HisKA_3	1.85
PF13185	GAF_2	1.85
PF00072	Response_reg	0.93
PF08240	ADH_N	0.93
PF00082	Peptidase_S8	0.93
PF12724	Flavodoxin_5	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG3850	Signal transduction histidine kinase NarQ, nitrate/nitrite-specific	Signal transduction mechanisms [T]	1.85
COG3851	Signal transduction histidine kinase UhpB, glucose-6-phosphate specific	Signal transduction mechanisms [T]	1.85
COG4564	Signal transduction histidine kinase	Signal transduction mechanisms [T]	1.85
COG4585	Signal transduction histidine kinase ComP	Signal transduction mechanisms [T]	1.85

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.07 %
All Organisms	root	All Organisms	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.07 %
cellular organisms	root	All Organisms → cellular organisms	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.07 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.93 %

Scaffold	Taxonomy	Length	IMG/M Link
3300012204\|Ga0137374_10100679	All Organisms → cellular organisms → Bacteria	2726	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	89.81%
Host-Associated	Host-Associated	10.19%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	87.96%
Plants	Host-Associated → Plants	10.19%
Aquatic	Environmental → Aquatic	1.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	87.96%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.56%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.70%
Sediment	Environmental → Aquatic → Sediment	1.85%
Roots	Host-Associated → Plants → Roots	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	79.63%
Loam	Environmental → Terrestrial → Soil → Loam	6.48%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.70%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.78%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.78%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.85%
Sand	Environmental → Terrestrial → Soil → Sand	1.85%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	54.63%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	15.74%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.56%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	4.63%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.70%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.70%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.78%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.78%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.85%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	1.85%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.93%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.93%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	27.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	13.89%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	12.04%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.41%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	5.56%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	4.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.70%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.70%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.85%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.85%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	1.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.85%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.93%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.93%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.93%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.93%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000887	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A3-65cm-16A)- 1 week illumina	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001334	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A21-65cm)- 6 month illumina	Environmental	Open in IMG/M
3300001536	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A15-65cm-8A)- 1 week illumina	Environmental	Open in IMG/M
3300001686	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005165	Soil and rhizosphere microbial communities from Laval, Canada - mgHMC	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300006178	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2	Host-Associated	Open in IMG/M
3300006572	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHPB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006573	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006574	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006578	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006580	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006581	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006605	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009811	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_20_30	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010303	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010336	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300011991	Permafrost microbial communities from Nunavut, Canada - A34_65cm_12M	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013765	Permafrost microbial communities from Nunavut, Canada - A30_80cm_6M	Environmental	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300020002	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a1	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300021413	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c1	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026313	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026342	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146 (SPAdes)	Environmental	Open in IMG/M
3300026547	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)	Environmental	Open in IMG/M
3300027056	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_20_30 (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300028716	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_198	Environmental	Open in IMG/M
3300028721	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_355	Environmental	Open in IMG/M
3300028778	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_142	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028796	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141	Environmental	Open in IMG/M
3300028799	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300031200	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 9_S	Environmental	Open in IMG/M
3300031424	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_150 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300034644	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_123 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AL16A1W_101553773	3300000887	Permafrost	TGFHRHAAYLTAGEVIFFFEAPEVEWIVNDIVDDPAISAAFGPWQKLIEGTPRLAHERFYWPRESSKLGIGLGV*
JGI10216J12902_1055976651	3300000956	Soil	EAPEVEWIVNDVIDDPILSAAFGPWRELVDGPPRLAHERYFWSREQEKTGIGLGT*
JGI10216J12902_1119553731	3300000956	Soil	HSAYLTTTEVIFFFEAPEVEWIVNDIVDDPLISAAFGPWQKLIDGTPRLAHERFYWSRESSKLGVGLGA*
JGI10216J12902_1138537961	3300000956	Soil	EWIVNDIIDDRVMSSAFGPWDKLIDGTPRLAHERYYWSREGDKLGVGLGV*
A2165W6_11647282	3300001334	Permafrost	VEWLVNDIVDDAVISAAFGPWHKLVEGPPRLAHERFYWSRESSKLGVGLGV*
A1565W1_108090751	3300001536	Permafrost	AYLTATEIVFLFEAPEVEWIVNDIVDDAVISAAFGPWHKLVEGVPRLAHERFYWSRESSKLGVGLGV*
C688J18823_102537783	3300001686	Soil	GEVVFVFEGPEVEWVVNDLVDDARVASFFAPWQKLVESTPRLAHERFYWSREAEKLGVGLGV*
Ga0062595_1012472721	3300004479	Soil	PFDPGDLGFHRHGAYLTASEVVFLFEAPQVEWIVNDIVDDPILADAFGSWRDLIESTPRLAHERFYWSLDDAELGIGLGV*
Ga0062595_1013034361	3300004479	Soil	FEAPEVEWLVNDIVDDAVISAAFGPWRKLIDGPPRLAQECFYWSRETNKLGVGLGV*
Ga0062595_1019808191	3300004479	Soil	VEWIVNDLVDDPRIASFFAPWEKLVEGTPRLAHERFYWSRAEGKLGVGQGV*
Ga0062594_1032056942	3300005093	Soil	ILNDVVDDPIVAETFGPWKDLIEGTPRLAHERFYWSRDEGRLGVGLDF*
Ga0066869_100090173	3300005165	Soil	DDPVVAAAFGPWEKLIEGTPRLAHERFYWSRESSKLGIGLGV*
Ga0066683_103299861	3300005172	Soil	PEVEWLVNDIVDDPILSTALAPWRALVDGPPRIAHERFYWSREREKLGVGLGS*
Ga0066683_107076762	3300005172	Soil	GFHRHGVYLTQSEVVFFFEAPEVEWLVNDIVDDPVLSTALSPWRPLVDGPPRVAHERFFWSRELTKSGVGLGI*
Ga0066683_107478912	3300005172	Soil	EAPEVEWIVNDIVDDPVMAAAFGPWQKLIDGPPRLAHERFYWSSESSKLGVGLGV*
Ga0066690_106243711	3300005177	Soil	QGPPFDAEELGFHRHGAFLTATEVVFFFEAPEVEWILSDLIDDPVISASFAPWQSLIKGSPRMAHEHFYWSREETKLGVGLGV*
Ga0070669_1005173692	3300005353	Switchgrass Rhizosphere	QVEWILNDVVDDPIVAETFGPWKDLIEGTPRLAHERFYWSRDEGRLGVGLDF*
Ga0070675_1007835311	3300005354	Miscanthus Rhizosphere	EWILNDVVDDPIVAETFGPWKDLIDGTPRLAHERFYWSRDEGRLGVGLDF*
Ga0070703_100493892	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	LNDVVDDPIVAETFGPWKDLIEGTPRLAHERFYWSRDEGRLGVGLDF*
Ga0070709_103931812	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	GPQVEWILNDVVDDPIVAETFGPWKDLIEGTPRLAHERFYWSRDEGRLGVGLDF*
Ga0070711_1009043431	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	VDDVVISAAFGPWHKLIDGPPRFAHERFYWSRESNKLGIGLGV*
Ga0070708_1003858623	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	IFEAPEVEWIVNDIVDDSVISTAFGPWHRLVDGVPRLAHERFYWSRESAKLGVGLGV*
Ga0066682_104039482	3300005450	Soil	WIVNDIVDDPVISAAFGPWHRLVDGAPRLAHERYYWSRESAKFGVGLGI*
Ga0070663_1018435512	3300005455	Corn Rhizosphere	FVFEGPQVEWILNDVVDDPIVAETFGPWKDLIEGTPRLAHERFYWSRDEGRLGVGLDF*
Ga0068867_1010321622	3300005459	Miscanthus Rhizosphere	GPPFDSEELGFDRHGAYLTATEVIFFFEAPEVEWIVNDVVDDPVISAAFEPWQKLIEGTPRLAHERFYWSRESSKLGVGLGV*
Ga0070679_1019482732	3300005530	Corn Rhizosphere	FEGPQVEWILNDVVDDPIVAETFGPWKDLIEGTPRLAHERFYWSRDEGRLGVGLDF*
Ga0066701_106034731	3300005552	Soil	FHRHAAYLTAGEVVFTFEAPEVEWIVNDIVDDPVISSAFGPWHKLIDGPPRLAHERFYWSRETSKLGVGLGV*
Ga0066707_105668952	3300005556	Soil	HRHAAYLTAGEVAFLFEAPEVEWIVNDIVDDPVMAAAFGPWQKLIDGPPRIAHERFYWSRDSNKLGVGLGV*
Ga0066699_105425411	3300005561	Soil	FEAPEVEWIVNDIVDDPVLSTAFAPWRAIVDGPPRIAHELFFWSRELEETGVGLGA*
Ga0068854_1017750501	3300005578	Corn Rhizosphere	REVEWIVNELIDDPRIAAYFTPWEKLIDGVPRLAHERYYWSRADQKLGIGLGV*
Ga0075367_105075062	3300006178	Populus Endosphere	EVEWIVNDLVDDPRVAPFFAPWEKLIDGPPRLAHERFHWSRAGEKLGVGLGV*
Ga0074051_116492681	3300006572	Soil	NDIVDDPVVAAAFGPWGKLIEGTPRLAHERFYWSRESSKLGIGLGV*
Ga0074055_117288771	3300006573	Soil	VDDPVVAAAFGPWEKLIEGTPRLAHERFYWSRESSKLGIGLGV*
Ga0074056_116204663	3300006574	Soil	VEWIVNDIVDDVVISAAFGPWHKLIDGPPRFAHERFFWSRESNKLGIGLGV*
Ga0074059_100146961	3300006578	Soil	ELGFHRHAAYLTTTEVVFFFEAPEVEWIINDIVDDPVVVAAFGPWEKLIEGTPRLAHERFYWSRESSKLGIGLGV*
Ga0074049_119042432	3300006580	Soil	VNDIVDDPVVAAAFGPWEKLIEGTPRLAHERFYWSRESSKLGIGLGV*
Ga0074048_129928003	3300006581	Soil	LTAGEIVFLFEGPEVEWLVNDIVDDVVISAAFGPWHKLVEGTPRLAHERFYWSRESGKLGVGLGV*
Ga0074057_119712581	3300006605	Soil	VEWIVNDIVDDVVISAAFGPWHKLIDGPPRFAHERFYWSRESNKLGIGLGV*
Ga0066665_108865591	3300006796	Soil	DVIDDPVVASAFAPWAPLIEGTPRLAHERLYWSREGEKLGVGLGA*
Ga0066659_106401972	3300006797	Soil	FEAPEVEWIVNEIVDDPILDAAFEPWRSIVDGPPRIAKERYHWSREAEKTGVGLGF*
Ga0068865_1010700061	3300006881	Miscanthus Rhizosphere	EVIFFFEAPEVEWIVNDVVDDPVISAAFEPWQKLIEGTPRLAHERFYWSRESSKLGVGLGV*
Ga0099827_105702783	3300009090	Vadose Zone Soil	TAGELVFLFEAPEVEWLVNDIIDDAVISAAFGPWRKLVDGTPRLAHERFYWSRESNKLGLGLGV*
Ga0099827_115857232	3300009090	Vadose Zone Soil	FHPEELGLHQHAAYLTATDVVFLFEAPEVEWIVNEIVDDPVVSAAFAPWHALIDGPPRLAHERYFWTREDSKTGIGLGT*
Ga0105247_100576284	3300009101	Switchgrass Rhizosphere	EGPQVEWILNDVVDDPIVAETFGPWKDLIEGTPRLAHERFYWSRDEGRLGVGLDF*
Ga0105084_10872802	3300009811	Groundwater Sand	LTAGEIVFLFEAAEVEWIVNDIVDDPVMSTAFGPWRNLIDGTPRLAHERFYWSRGSSKLGVGLGV*
Ga0126310_103998741	3300010044	Serpentine Soil	RHAAYLTAGEIVFVFEAAQVEWIVNELIDDPRIAAYFAPWEKLVDGVPRLAHERFYWSRADEKLGVGLGV*
Ga0134082_102681112	3300010303	Grasslands Soil	FEAPEVEWIVNDIVDDPVISAAFGPWHSLVDGTPRLAHERYHWSRESAKLGVGLGV*
Ga0134082_104069791	3300010303	Grasslands Soil	FFEAPEVEWLVNDIVDDPVLSTALSPWRPLVDGPPRVAHERFFWSREPEKSGVGLGI*
Ga0134088_101588203	3300010304	Grasslands Soil	EWIVNDLLDDPVLSAALEPWRGLVEGPPHIAHEHYFWSREEAKTGIGLGV*
Ga0134088_104048502	3300010304	Grasslands Soil	VDDAVISAAFGPWRKLIDGPPRLAHERFYWSRESNKLGVGLGA*
Ga0134084_102985382	3300010322	Grasslands Soil	YLTATDVVFIFEAPEVEWLVNDVIDHPVIATALAPWRGLVDGPPRLSHERYFWSRADQKSGIGLGV*
Ga0134071_104295512	3300010336	Grasslands Soil	EVEWLVNDMVDDPLISTAFGPWQKLIDGTPRLAHERFYWSRELGKLGVGLGV*
Ga0134128_119998832	3300010373	Terrestrial Soil	RVDAGGREQVPDIVDDPRVADFFAPWQKLIEDTPRLAHERFHWSEADAKLAVGLGI*
Ga0105239_119996581	3300010375	Corn Rhizosphere	QLGLERHAAYLTAGEVVFLFEAREVEWIVNELIDDPRIAAYFTPWEKLIDGVPRLAHERYYWSRADQKLGIGLGV*
Ga0120153_10105063	3300011991	Permafrost	PFDPEELGFHRHAAYLTAGEVIFFFEAPEVEWIVNDIVDDPAISAAFGPWQKLIEGTPRLAHERFYWPRESSKLGIGLGV*
Ga0137374_101006794	3300012204	Vadose Zone Soil	VVFAFEAPEVEWVVNDIVDDPVISSAFGPWQKLIEETPRLAHELFYWSRETSKLGVGLGA
Ga0137374_102503951	3300012204	Vadose Zone Soil	PEVEWVVNDLIDDPAVSAYFDPWQKLIDGPPRLAHERYYWSGAEDKLGVGLGT*
Ga0137380_105087531	3300012206	Vadose Zone Soil	LRNGPPFDSEDAGFHRHAAYLTQSEVVFLFEAPEVEWIVNDIVDDPVISTAFAPWRALLDGPPRIAHERFFWSRELEETGVGLGM*
Ga0137381_101874763	3300012207	Vadose Zone Soil	NDIVDDAVISAAFGPWRKLIDGPPRLAHERFYWSRESNKLGVGLGA*
Ga0137370_110423601	3300012285	Vadose Zone Soil	VVFFFEASEVEWLVNDIVDDPVLSTALSPWRPLVDGPPRVAHERFFWSRELTKSGVGLGI
Ga0137372_100659094	3300012350	Vadose Zone Soil	PVTSATFGPWHDVIEGTPRLGHERFFWSREQEKLGIGLGV*
Ga0137367_109555732	3300012353	Vadose Zone Soil	GLERHAAYLTATEVVFLFEAPGVEWIVNDLVDDPAVAVFFGPWEKLIEGTPRLAHERFYWSREEDKLGVGLGV*
Ga0137366_103768701	3300012354	Vadose Zone Soil	NDIVDDPVISAAFGPWHRLVDSAPRLAHERYYWSRQSAKLGVGLGV*
Ga0137369_111493002	3300012355	Vadose Zone Soil	FEAPEVEWIVNDLVDDPILSTALAPWYNLVDGPPRIAHERFYWSCESAKLGVGLGI*
Ga0137368_105950142	3300012358	Vadose Zone Soil	YLTARVVVFVFAAPEVEWIVNDLIDDPAKSAAFSAWQGLLDGPPRLAHERFYWSREESKTGIGLGA*
Ga0164302_109430991	3300012961	Soil	VNELVDDPTIATFFAPWEKLIEGTPRLAHERYYWSRADAKIGVGLGL*
Ga0164308_118943522	3300012985	Soil	EVIFFFEAPEVEWIVNDIVDDPVISAAFEPWQKLIEGTPRLAHERFYWSRESSKLGVGLGV*
Ga0157369_111859661	3300013105	Corn Rhizosphere	EWKVNELIDDPVISSFFAPWEKLVDGPPRIAHERFYWSRAEAKLGVGLGV*
Ga0120172_10183341	3300013765	Permafrost	VEWLVNDIVDDAVISAAFGPWRKLIDGTPRLAHERFYWSRESNKLGVGLGA*
Ga0173483_105991431	3300015077	Soil	EELGFHRHSAYLTAGELVFLFEAPEVEWLVNDIVDDAVISAAFGPWRKLIDGPPRLAQECFYWSRETNKLGVGLGV*
Ga0184619_102665231	3300018061	Groundwater Sediment	PEVEWIVNDIINNPVISAAFGPWHNLIDGTPHLAHERYYWSGESSKLKVGLGV
Ga0184609_105788282	3300018076	Groundwater Sediment	MDRNDIVDDVVISAAFGPWHKLIDGPPRFAHERFFWSRESNKLGLGLGV
Ga0066667_115506302	3300018433	Grasslands Soil	WIVNDIVDDPVISAAFGPWHSLVDGTPRLAHERYHWSRESAKLGVGLGV
Ga0193730_10661733	3300020002	Soil	NDIVDDAVISAAFGPWHKLVDGPPRLAHERFYWSRESSELGVGLGV
Ga0193719_101915572	3300021344	Soil	FHRHAAYLTAGEVVFLFEAPEVEWIVNDIVDDVVISAAFGPWYNLIDGPPRLAHERFYWSRESNKLGLGLGV
Ga0193750_10632521	3300021413	Soil	GLHRHAAYITAREIVFLFEAPEVEWIVNDLIDDSLIAEAFAPWESIVEGTPRGASERYYWSREESKLGVGLGV
Ga0207664_107079552	3300025929	Agricultural Soil	WILNDVVDDPIVAETFGPWKDLIEGTPRLAHERFYWSRDEGRLGVGLDF
Ga0207676_117067432	3300026095	Switchgrass Rhizosphere	PQVEWILNDVVDDPIVAETFGPWKDLIDGTPRLAHERFYWSRDEGRLGVGLDF
Ga0209761_11972541	3300026313	Grasslands Soil	EAPEVEWLVNDMVDDPLISTAFGPWQKLIDGTPRLAHERFYWSRELGKLGVGLGV
Ga0209057_11509711	3300026342	Soil	LVNDIVDDPILSTALAPWRALVDGPPRIAHERFYWSREREKLGVGLGS
Ga0209156_104836642	3300026547	Soil	EVEWLVNDIVDDPVLSTALSPWRPLVDGPPRVAHERFFWSRELAKSGVGLGI
Ga0209879_10191203	3300027056	Groundwater Sand	VEWIVNDIVDDPVMSTAFGPWRNLIDGTPRLAHERFYWSRGSSKLGVGLGV
Ga0209590_102934011	3300027882	Vadose Zone Soil	LTAGELVFLFEAPEVEWLVNDIIDDAVISAAFGPWRKLVDGTPRLAHERFYWSRESNKLGLGLGL
Ga0307293_101306962	3300028711	Soil	EWIVNDIVDDVVISAAFGPWHKLIDGPPRFAHERFFWSRESNELGIGLGV
Ga0307293_102307402	3300028711	Soil	EWIVNDIVDDVVISAAFGPWYNLIDGPPRLAHERFYWSRESNKLGVGLGV
Ga0307311_100291683	3300028716	Soil	APEVEWLVNDIVDDAVISAAFGPWRKLIDGTPRLAHEHFYWSRESNKLGLGLGV
Ga0307315_102530122	3300028721	Soil	TAGEVAFLFEAPEVEWLVNDIVDDAVISAAFGPWRKLIDGTPRLAHEHFYWSRESNKLGLGLGV
Ga0307288_102057642	3300028778	Soil	SRRPRTSSPRARLFDLEELAFHRHAAYLTAGEVVFLFEAPEVEWIVNDIVDDVVISAAFGPWHKLIDGPPRFAHERFFWSRESNELGIGLGV
Ga0307282_100312303	3300028784	Soil	DDVVISAAFGPWHKLVEGTHRLAHERFYWSRESSKLGVGLGV
Ga0307282_103304231	3300028784	Soil	VFLFEAPEVEWIVNDLVDDPRLSAAFDPWRKLVEGTPRLAHERFYWSRDEDRLGVGLGV
Ga0307287_100797743	3300028796	Soil	AAYLTAGEVVFLFEAPEVEWIVNDIVDDVVISAAFGPWYNLIDGPPRLAHERFYWSRESNKLGVGLGV
Ga0307284_103644802	3300028799	Soil	HRHAAYLTAGEVVFLFEAPEVEWIVNDIVDDVVISAAFGPWYNLIDGPPRLAHERFYWSRESNKLGLGLGV
Ga0307305_101901103	3300028807	Soil	DVVISAAFGPWHKLIDGPPRFAHERFFWSRESNELGIGLGV
Ga0307305_104049681	3300028807	Soil	EWIVNDIVDDIVISAAFGPWQKLVDGPPRLAHERFFWSRDSNKLGVGLGV
Ga0307302_102431831	3300028814	Soil	DLEELGFHRHAAYLTAGEVVFLFEAPEVEWIVNDIVDDVVISAAFGPWHKLIDGAPRFAHERFFWSRESNELGIGLGV
Ga0307302_102570071	3300028814	Soil	EWIVNDIINNPVISAAFGPWHNLIDGTPHLAHERYYWSGESSKLKVGLGV
Ga0307302_105805842	3300028814	Soil	DLGFHRHAAYLTAGEVVFLFEAPEVEWIVNDIVDDVVISAAFGPWYNLIDGPPRLAHERFYWSRESNKLGVGLGV
Ga0307296_102448821	3300028819	Soil	ELGFHRHAAYLTAGEVVFLFEAPEVEWIVNDIVDDVVISAAFGPWHKLIDGPPRFAHERFFWSRESNKLGIGLGV
Ga0307296_106886282	3300028819	Soil	RHAAYLTAGEVVFLFEAPEVEWIVNDIVDDVVISAAFGPWYNLIDGPPRLAHERFYWSRESNKLGVGLGV
Ga0307310_104348581	3300028824	Soil	VNDIVDDVVISAAFGPWYNLIDGPPRLAHERFYWSRESNKLGVGLGV
Ga0307286_103005132	3300028876	Soil	VEWIVNDIVDDPIVAETFGPWKDLIEGTPRLAHELFYWSRDEGRLGVGLGV
Ga0307278_102587621	3300028878	Soil	GFHRHAAYLTAGEVVFLFEAPEVEWIVNDIVDDVPISAAFGPWYNLIDGPPRLAHERFYWSRESNKLGLGLGV
Ga0307277_102113681	3300028881	Soil	DIVDDAVISAAFGPWRKLIDGAPRLAHERFYWSRESNKLGLGLGV
Ga0307308_101832233	3300028884	Soil	LFEGPEVEWIVSDIIDDPRISAAFDPWHDLIEATPRLAHERFYWSRDAGKLGVGLGV
Ga0307496_101423642	3300031200	Soil	LGFHRHAAYLTAGEVVFLFEGPQVEWILNDVIDDPIVAETFGPWKDLIEGTPRLAHERFYWSRDEGRLGVGLDF
Ga0308179_10136891	3300031424	Soil	EELGFHRHAAYLTAGEVVFLFEAPEVEWIVNDIVDDVVISAAFGPWHKLIDGPPRFAHERFFWSRESNELGIGLGV
Ga0307472_1017196502	3300032205	Hardwood Forest Soil	VFLFEGPQVEWILNDVVDDPIVAETFGPWKDLIEGTPRLAHERFYWSRDEGRVGAGLDF
Ga0370548_050214_2_223	3300034644	Soil	GFHRHAAYLTAGEVVFLFEAPEVEWIVNDIVDDVVISAAFGPWHKLIDGPPRFAHERFFWSRESNELGIGLGV

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.25
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.25
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F090628

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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