Metagenome / Metatranscriptome Family F090655

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F090655
Family Type	Metagenome / Metatranscriptome
Number of Sequences	108
Average Sequence Length	71 residues
Representative Sequence	VNGDWSEPLSALRWHWGEAYVINCLGTGRWTAERRDTHETLRDQTPLGLRDQIIADYTARKVSRNLPGQPG
Number of Associated Samples	66
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	51.85 %
% of genes near scaffold ends (potentially truncated)	28.70 %
% of genes from short scaffolds (< 2000 bps)	77.78 %
Associated GOLD sequencing projects	62
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.62

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (50.926 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland (24.074 % of family members)
Environment Ontology (ENVO)	Unclassified (37.963 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (75.926 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 25.25% β-sheet: 17.17% Coil/Unstructured: 57.58%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.62
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.62
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF00392	GntR	36.11
PF10935	DUF2637	5.56
PF01828	Peptidase_A4	1.85
PF13560	HTH_31	1.85
PF00589	Phage_integrase	1.85
PF15919	HicB_lk_antitox	1.85
PF00805	Pentapeptide	0.93
PF00672	HAMP	0.93
PF13340	DUF4096	0.93
PF00293	NUDIX	0.93
PF08751	TrwC	0.93
PF02384	N6_Mtase	0.93
PF13401	AAA_22	0.93
PF01636	APH	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG1357	Uncharacterized conserved protein YjbI, contains pentapeptide repeats	Function unknown [S]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	53.70 %
Unclassified	root	N/A	46.30 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	50.93 %
Unclassified	root	N/A	46.30 %
Viruses	superkingdom	All Organisms → Viruses	2.78 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	50.93 %
Unclassified	root	N/A	46.30 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.30 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	44.44 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.30 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	44.44 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.30 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	37.96 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.30 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	3.70 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.78 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	1.85 %
Frankiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales	1.85 %
Catenulisporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales	0.93 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.93 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.93 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.30 %
Nocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae	2.78 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.78 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	1.85 %
Frankiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae	1.85 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.93 %
Actinospicaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Actinospicaceae	0.93 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.93 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.93 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.30 %
Nocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia	2.78 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.78 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	1.85 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	1.85 %
Mycobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	0.93 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.93 %
Actinospicaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Actinospicaceae	0.93 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.93 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.30 %
Nocardia amamiensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia amamiensis	2.78 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.78 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	1.85 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	1.85 %
unclassified Streptomyces	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces	0.93 %
Mycobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	0.93 %
Actinospicaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Actinospicaceae	0.93 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.93 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.30 %
Nocardia amamiensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia amamiensis	2.78 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.78 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	1.85 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	1.85 %
Streptomyces sp. T1317-0309	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. T1317-0309	0.93 %
Mycobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	0.93 %
Actinospicaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Actinospicaceae	0.93 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.93 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001356\|JGI12269J14319_10009946	All Organisms → cellular organisms → Bacteria	7787	Open in IMG/M
3300001356\|JGI12269J14319_10030933	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3559	Open in IMG/M
3300001356\|JGI12269J14319_10035383	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3232	Open in IMG/M
3300001356\|JGI12269J14319_10100346	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia amamiensis	1423	Open in IMG/M
3300001356\|JGI12269J14319_10225833	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	715	Open in IMG/M
3300004091\|Ga0062387_100794880	Not Available	704	Open in IMG/M
3300004152\|Ga0062386_100058485	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	2912	Open in IMG/M
3300005471\|Ga0070698_101946675	Not Available	541	Open in IMG/M
3300005537\|Ga0070730_10077395	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. T1317-0309	2335	Open in IMG/M
3300005538\|Ga0070731_10127377	Not Available	1687	Open in IMG/M
3300005541\|Ga0070733_10142950	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1549	Open in IMG/M
3300005602\|Ga0070762_10215967	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1179	Open in IMG/M
3300005921\|Ga0070766_10788648	Not Available	647	Open in IMG/M
3300006050\|Ga0075028_100799803	Not Available	575	Open in IMG/M
3300006176\|Ga0070765_100488441	All Organisms → Viruses → Predicted Viral	1156	Open in IMG/M
3300006579\|Ga0074054_11667293	Not Available	508	Open in IMG/M
3300006581\|Ga0074048_11809985	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia amamiensis	863	Open in IMG/M
3300006604\|Ga0074060_11795111	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia amamiensis	675	Open in IMG/M
3300006953\|Ga0074063_13868714	All Organisms → Viruses → Predicted Viral	1017	Open in IMG/M
3300009700\|Ga0116217_11041903	Not Available	500	Open in IMG/M
3300010379\|Ga0136449_100248123	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3311	Open in IMG/M
3300010379\|Ga0136449_100302207	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	2917	Open in IMG/M
3300010379\|Ga0136449_101127515	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Actinospicaceae	1245	Open in IMG/M
3300010379\|Ga0136449_101226729	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1178	Open in IMG/M
3300010379\|Ga0136449_101919417	Not Available	879	Open in IMG/M
3300010379\|Ga0136449_102185522	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	808	Open in IMG/M
3300017821\|Ga0187812_1016872	Not Available	2521	Open in IMG/M
3300017821\|Ga0187812_1043614	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1520	Open in IMG/M
3300017821\|Ga0187812_1089568	Not Available	1010	Open in IMG/M
3300017822\|Ga0187802_10301279	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	625	Open in IMG/M
3300017926\|Ga0187807_1003028	Not Available	5212	Open in IMG/M
3300017926\|Ga0187807_1010923	Not Available	2788	Open in IMG/M
3300017926\|Ga0187807_1158022	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	726	Open in IMG/M
3300017932\|Ga0187814_10185785	Not Available	779	Open in IMG/M
3300017933\|Ga0187801_10242306	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	723	Open in IMG/M
3300017937\|Ga0187809_10168339	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	765	Open in IMG/M
3300017942\|Ga0187808_10069821	Not Available	1506	Open in IMG/M
3300017961\|Ga0187778_10076023	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	2066	Open in IMG/M
3300017966\|Ga0187776_11213014	Not Available	566	Open in IMG/M
3300017970\|Ga0187783_10045612	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3241	Open in IMG/M
3300017970\|Ga0187783_10106439	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2068	Open in IMG/M
3300017970\|Ga0187783_10270181	Not Available	1242	Open in IMG/M
3300017972\|Ga0187781_10083840	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2203	Open in IMG/M
3300017972\|Ga0187781_10499581	Not Available	873	Open in IMG/M
3300017972\|Ga0187781_10574491	All Organisms → cellular organisms → Bacteria	812	Open in IMG/M
3300017972\|Ga0187781_11071631	Not Available	591	Open in IMG/M
3300017972\|Ga0187781_11206329	Not Available	557	Open in IMG/M
3300017973\|Ga0187780_10582291	Not Available	803	Open in IMG/M
3300017973\|Ga0187780_11465397	Not Available	504	Open in IMG/M
3300017975\|Ga0187782_10338792	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	1138	Open in IMG/M
3300017975\|Ga0187782_11521141	Not Available	527	Open in IMG/M
3300018001\|Ga0187815_10318473	Not Available	660	Open in IMG/M
3300018006\|Ga0187804_10580538	Not Available	508	Open in IMG/M
3300018007\|Ga0187805_10524138	Not Available	556	Open in IMG/M
3300018012\|Ga0187810_10044315	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1666	Open in IMG/M
3300018058\|Ga0187766_11387144	Not Available	515	Open in IMG/M
3300018062\|Ga0187784_10612570	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	874	Open in IMG/M
3300018064\|Ga0187773_10351549	Not Available	839	Open in IMG/M
3300018085\|Ga0187772_10004373	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	7203	Open in IMG/M
3300018085\|Ga0187772_10198197	Not Available	1348	Open in IMG/M
3300018085\|Ga0187772_10621971	Not Available	770	Open in IMG/M
3300018085\|Ga0187772_10697375	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	728	Open in IMG/M
3300018085\|Ga0187772_11426400	Not Available	514	Open in IMG/M
3300018086\|Ga0187769_10299068	Not Available	1203	Open in IMG/M
3300018086\|Ga0187769_10886740	Not Available	675	Open in IMG/M
3300018086\|Ga0187769_10997077	Not Available	634	Open in IMG/M
3300018090\|Ga0187770_10777973	Not Available	766	Open in IMG/M
3300020582\|Ga0210395_10146410	Not Available	1762	Open in IMG/M
3300020583\|Ga0210401_11523801	Not Available	526	Open in IMG/M
3300021180\|Ga0210396_10835873	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	788	Open in IMG/M
3300021180\|Ga0210396_11379183	Not Available	584	Open in IMG/M
3300021402\|Ga0210385_11019926	Not Available	636	Open in IMG/M
3300021403\|Ga0210397_10217075	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1374	Open in IMG/M
3300021405\|Ga0210387_10172053	All Organisms → cellular organisms → Bacteria	1866	Open in IMG/M
3300021406\|Ga0210386_11501941	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	562	Open in IMG/M
3300021407\|Ga0210383_10631184	All Organisms → cellular organisms → Bacteria	923	Open in IMG/M
3300021407\|Ga0210383_11542679	Not Available	548	Open in IMG/M
3300021420\|Ga0210394_11318499	Not Available	616	Open in IMG/M
3300021420\|Ga0210394_11536907	Not Available	562	Open in IMG/M
3300021476\|Ga0187846_10439873	Not Available	534	Open in IMG/M
3300026551\|Ga0209648_10330672	Not Available	1065	Open in IMG/M
3300027857\|Ga0209166_10406964	Not Available	706	Open in IMG/M
3300027905\|Ga0209415_10058159	All Organisms → cellular organisms → Bacteria	4813	Open in IMG/M
3300027905\|Ga0209415_10067382	All Organisms → cellular organisms → Bacteria	4306	Open in IMG/M
3300027905\|Ga0209415_10089189	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3474	Open in IMG/M
3300027905\|Ga0209415_10162068	Not Available	2214	Open in IMG/M
3300027905\|Ga0209415_10173041	All Organisms → cellular organisms → Bacteria	2107	Open in IMG/M
3300027905\|Ga0209415_10308635	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1357	Open in IMG/M
3300027905\|Ga0209415_10360805	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1202	Open in IMG/M
3300027905\|Ga0209415_10566241	Not Available	853	Open in IMG/M
3300028828\|Ga0307312_10156127	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1450	Open in IMG/M
3300028906\|Ga0308309_10436089	All Organisms → Viruses → Predicted Viral	1127	Open in IMG/M
3300030494\|Ga0310037_10138660	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1109	Open in IMG/M
3300031090\|Ga0265760_10237175	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	627	Open in IMG/M
3300031640\|Ga0318555_10544191	Not Available	629	Open in IMG/M
3300031708\|Ga0310686_100409286	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2909	Open in IMG/M
3300031708\|Ga0310686_101720352	Not Available	1356	Open in IMG/M
3300031708\|Ga0310686_117719313	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	2119	Open in IMG/M
3300031819\|Ga0318568_10935529	Not Available	536	Open in IMG/M
3300032044\|Ga0318558_10690897	Not Available	510	Open in IMG/M
3300032160\|Ga0311301_10138760	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4466	Open in IMG/M
3300032160\|Ga0311301_10324181	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	2440	Open in IMG/M
3300032160\|Ga0311301_10732855	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1379	Open in IMG/M
3300032160\|Ga0311301_11259964	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	940	Open in IMG/M
3300032805\|Ga0335078_10474405	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1616	Open in IMG/M
3300032895\|Ga0335074_11060852	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	705	Open in IMG/M
3300032898\|Ga0335072_10503066	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1255	Open in IMG/M
3300033134\|Ga0335073_11067118	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	827	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	83.33%
Aquatic	Environmental → Aquatic	16.67%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	82.41%
Freshwater	Environmental → Aquatic → Freshwater	15.74%
Sediment	Environmental → Aquatic → Sediment	0.93%
Cave	Environmental → Terrestrial → Cave	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	50.00%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	27.78%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	15.74%
Loam	Environmental → Terrestrial → Soil → Loam	4.63%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.93%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	35.19%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	27.78%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	13.89%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	13.89%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.70%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.93%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.93%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	24.07%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	23.15%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	13.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	13.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.70%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	3.70%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	3.70%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	3.70%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.85%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.93%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.93%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.93%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001356	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006579	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006581	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006604	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006953	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300017821	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_2	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017926	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_2	Environmental	Open in IMG/M
3300017932	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017937	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4	Environmental	Open in IMG/M
3300017942	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018001	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_5	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018012	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_5	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018064	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MG	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021476	Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027857	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300030494	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG (v2)	Environmental	Open in IMG/M
3300031090	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12269J14319_100099463	3300001356	Peatlands Soil	MSSDWDEPLTALRWHWGEAYIINCLGPGDWLAERRDTHETLRDQTPLDLRERIIADYTARPVSRAVAPLVPRERPHL*
JGI12269J14319_100309331	3300001356	Peatlands Soil	MCHTPYARRMGSDWDEPLSALRWHWGEAYIINCLALGNWTAERRDNHETLRDTTPLGLRDRIIADYTARPVPRPGP*
JGI12269J14319_100353834	3300001356	Peatlands Soil	VSSDWDDPLGALRWHWGSAYVISHHGGSAWVAQRRDTRETLRAETPLGLRDKIIADYTGRPVSRDLPAQPGPGSSVPR*
JGI12269J14319_101003462	3300001356	Peatlands Soil	VTGDWSEPLSALRWHWGEAYVINCLGTGRWTAERRDTHQTLRDQTPLGLRDQIIADYAARKVSRSLPGQPG*
JGI12269J14319_102258331	3300001356	Peatlands Soil	MGSDWDEPLSALRWHWGEAYTINCLALGNWTAERRDNHETLRDTTPLGLRDRIIADYTARPVPRP
Ga0062387_1007948802	3300004091	Bog Forest Soil	MGSDWDEPLIALRWHWGEAYAICHPEPDVWTAQRRDTRETLRDFPPVGLRNQIIRDYTARSVKRGQVAS*
Ga0062386_1000584854	3300004152	Bog Forest Soil	VNGDWSEPLSALRGHWGEAYVINYLGAGRWTAERRDTHQTLRDQSPLGLRDQIIADYAARKVSRSLPGQPG*
Ga0070698_1019466752	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	VNGDWSEPLSALRWHWGEAYVINCLRTGRWTAERRDTHETLRDQTPLGLRDQIIADYAARKVGRSLPGHPDDLAPGRHRG*
Ga0070730_100773952	3300005537	Surface Soil	VSSEWDDPLGALTWHWGSAYTICNPEAGVWLAVRRDDHATLRDETPLGLRDKIIRDYTARPVSRDLPAQPGPDSNVPR*
Ga0070731_101273772	3300005538	Surface Soil	MSSDNEPLDALCWHWGEAYVINCLGLGRWTAAPGTHKTLRDETPLGLRDRIIADYAARPVSRQLTGVSLLERLGGWFLSEG*
Ga0070733_101429504	3300005541	Surface Soil	VSSHWDDPLGALQWHWDSAYIISCHGTGLWIAQRRDTRETLSAETPLGLRDKIIADYTARPVSRDLPSRACAG*
Ga0070762_102159671	3300005602	Soil	MGSDWDEPLIALRWHWGEAYVICHPEPDVWTAQRRDTRETLRDFTPVGLRDQIIRDYTARSVKRSRVVF*
Ga0070766_107886482	3300005921	Soil	MGSDWDEPLIALRWHWGEAYVICHPKPDVWMAQRRDNRETLRDFTPVGLRDQIIRDYTARSVKRGRVAS*
Ga0075028_1007998031	3300006050	Watersheds	VNGDWSEPLSALRWHWGEAYVINRLGTGRWTAERRDTHETLRDQTPLGLRDQIIADYAARKVSRSLPGQPG*
Ga0070765_1004884412	3300006176	Soil	MMDWNEPLAALRWHWGEAYIINCLGLGNWTAERRDTHETLRADTPLGLRDKIVADYTARKVSRSLPEV*
Ga0074054_116672931	3300006579	Soil	VNGDWSEPLSALRWHWGEAYVINCLRTGRWTAERRDTHETLRDQTPLGLRDQIIADYAARKVSRSLPGQPG*
Ga0074048_118099851	3300006581	Soil	VNGDWSEPLSALRWHWGEAYVINCLRTGRWTAERRDTHETLRDQTPLGLRDQIIANYAARKVSRSLPGQPG*
Ga0074060_117951111	3300006604	Soil	VNGDWSEPLSALRWHWGEAYVINCLRTGRWTAERRDTHETLRDQTPLGLRDQIIADYAAR
Ga0074063_138687143	3300006953	Soil	VTGDWSEPLSALRWHWGEAYVINCLGTGRWTAERRDTHETLRDQTPLGLRDQIIADYAARKVSRSLPGNPDDLAPGRHRG*
Ga0116217_110419032	3300009700	Peatlands Soil	VTGDWDEPLDALRWHWGEAYVINCLGLGRWTAERRDTHETLGDQTPLGLRDKIIADYSARKVPRHPNGHLP
Ga0136449_1002481237	3300010379	Peatlands Soil	MGSDWDEPLSALRWHWGEAYIINCLALGNWTAERRDNHETLRDTTPLGLRDRIIADYTARPVPRPGP*
Ga0136449_1003022077	3300010379	Peatlands Soil	VDDDWDEPLRALRWNWDEAYIISRPEPGVWVAERLDNHETLRDETPFGLREKIIADYAERPVRRDVEP*
Ga0136449_1011275151	3300010379	Peatlands Soil	VSSDWDEPLGALTWHWGSAYSICNPKAGVWLAIRRDDHTTLRDGTPLGLRDKIIADYTARPVSRDLPTQPGPGSAVSR*
Ga0136449_1012267292	3300010379	Peatlands Soil	MGSDWDEPLIALRWHWGEAYVICHPEPDVWTAQRQDTRETLRDFTPVGLRNQIIRDYTARSVKRSQVAS*
Ga0136449_1019194171	3300010379	Peatlands Soil	VSSDWAEPLDALRWHWGEAYVINCLGPGNWLAERRDTHETLRDETPLGLRDCIIADYAARPVSRQFDRRQPG
Ga0136449_1021855222	3300010379	Peatlands Soil	MVTWDEPLDALKWHWGSAYSIHHPGPDVWLAQRRDTYETLRDETPAGLRNRIVADYSARPVSRDAAP*
Ga0187812_10168722	3300017821	Freshwater Sediment	VADFEVMTPLGDLRWHWGSAYIINCLGLGKWVAQRRDTHETLRDETPLGLREQIIADYGRRRVPRTSSG
Ga0187812_10436143	3300017821	Freshwater Sediment	MGSDWDEPLSALRWHWGEAYIISHLEPDVWMAQRRDTGETLRDVTPLGLRDQIIRDYTARSVKRGRAAS
Ga0187812_10895683	3300017821	Freshwater Sediment	MGSDWDQPLSALRWHWGEAYIINCHGLGRWTAERRDTHETLRDQTPLGLRAKIIADYSARRVSRSLPGSTPAPGYS
Ga0187802_103012791	3300017822	Freshwater Sediment	MGSDWDEPLSALRWHWGEAYVICHPEPDVWTAQRRDTHETLRDFTPLGLRDQIIRDYTARSVKRGRAAS
Ga0187807_10030285	3300017926	Freshwater Sediment	LRERYYGRVMGSDWDQPLSALRWHWGEAYIINCHGLGRWTAERRDTHETLRDQTPLGLRAKIIADYSARRVSRSLPGSTPAPGYS
Ga0187807_10109233	3300017926	Freshwater Sediment	VADFEVMTPLGDLRWHWGSAYIINCLGLGKWVAERRDTHETLRDETPLGLREQIIADYGRRRVPRTSSG
Ga0187807_11580223	3300017926	Freshwater Sediment	VSSEWDQPLSALRWHWGDAYQIANPEPDLWIAVRRDTHETLRSDTPLGLRDAI
Ga0187814_101857851	3300017932	Freshwater Sediment	MSNDWDDPLGALQWHWGSAYVISHHGGSAWVAQRRDTRETLRAGTPLGLRDKIIADYTARPVSRDLPDQPGPWPG
Ga0187801_102423061	3300017933	Freshwater Sediment	MGSDGDEPLSALRWHWGEAYIISHPEPDVWMAQRRDIGETLRDVTPLGLRDQIIRDYTARSVKRGRAAS
Ga0187809_101683391	3300017937	Freshwater Sediment	MGSDWDEPLSALRWHWGEAYVICHPEPDVWTAQRRDTHETLRDFTPLGLRDQIIRDYTARSVKRGR
Ga0187808_100698211	3300017942	Freshwater Sediment	MTPLGDLRWHWGSAYIINCLGLGKWVAERRDTHETLRDETPLGLREQIIADYGRRRVPRTSSG
Ga0187778_100760233	3300017961	Tropical Peatland	VTGDWSEPLSALRWHWGEAYVINCLRTGRWTAERRDTHEMLRDQTPLGLRDQIIADYAARKVSRGLPGQPG
Ga0187776_112130142	3300017966	Tropical Peatland	VNGDWSEPLSALRWHWGEAYVISCPGTGRWTAERRDTRQTLRDQARVGLRDQIIADYAARKVSRSLPG
Ga0187783_100456124	3300017970	Tropical Peatland	MVSDWDEPLAALRWHWGEAYIINCLGPGDWLAERRDTHETLRGQTPLDLRERIITDYTARPVSRTVAPPAPRERQDL
Ga0187783_101064394	3300017970	Tropical Peatland	MVSDWDEPLAALRWHWGEAYIINCLGPGDWLAERRDTHETLRGQTPLGLRERIIADYTARPVSRAVAPLMPHERTDL
Ga0187783_102701811	3300017970	Tropical Peatland	SDWSEPLAALRWHLGSAYLINCPGAGRWIAERRDTRETLRADTPLGLRDKIIADYTARPVSRNLPGQPLGRGAVHEERLQLYF
Ga0187781_100838404	3300017972	Tropical Peatland	MGSDWDEPLSALRWHWGEAYVISHPEPDVWMAQRRDTCETLRDVTALGLRDQIIRDYTARSVKRG
Ga0187781_104995812	3300017972	Tropical Peatland	MSSDWDEPLQALRWHWGEAYIINCLGLGAWMAERRDTHETLRAGTPLGLREHIIADYAARPVPRCPPGQPAGR
Ga0187781_105744911	3300017972	Tropical Peatland	MVSDWDEPLADLRWHWGEAYVINCLGPGDWLAERRDTHHTLRDQTPLGLRERIIADYTARPVSRAVAPSAPRERQHP
Ga0187781_110716311	3300017972	Tropical Peatland	PLSALRWHWGEAYVINCLGTGWWTAERRDTHETLRDQTSLGLREQIIADYAARKVSRSLPGQPG
Ga0187781_112063291	3300017972	Tropical Peatland	VNSDWDEPLDALRWHWGSAYIINCLAAGRWIAERRDTHGTLRANTPLGLRDEIIADYTACPVRRDPPSQPSSHG
Ga0187780_105822912	3300017973	Tropical Peatland	MGSEWNDPLDALRWHWGEAYIISHAKPDVWMAQRRDTGETLRDVTPLGLRDQIIRDYTARSVKRGRAAS
Ga0187780_114653972	3300017973	Tropical Peatland	VNGDWSEPLSALRWHWGEAYVINCLGTGRWTAERRDTHEMLRDQTPLGLRDQIIADYTARKVSRRG
Ga0187782_103387922	3300017975	Tropical Peatland	VNSDWDEPLDALRWHWGTAYIINCLAAGRWIAERRDTHETLRADTPLGLRDKIIADYTARPVSRDLPGQPYSRGAVHK
Ga0187782_115211412	3300017975	Tropical Peatland	MGSDWDEPLQALRWHWGSAYIINCARLGRWTAERRDNHETLRDGTPLGLRDKIIADYAARPVSRNLPGQPGPWPG
Ga0187815_103184732	3300018001	Freshwater Sediment	VNSDWDEPLDALRWHWGSAYIINCLAAGRWIAERRDTHETLRADTPLGLRDKIIADYTARPVTRDLPSQPSSRGAVHK
Ga0187804_105805381	3300018006	Freshwater Sediment	MGSDWDEPLSALRWHWGEAYIISHLEPDVWMAQRRDTGETLRDVTPLGLRDQITRDYT
Ga0187805_105241381	3300018007	Freshwater Sediment	TLRERYYGRVMGSDWDQPLSALRWHWGEAYIINCHGLGRWTAERRDTHETLRDQTPLGLRAKIIADYSARRVSRSLPGSTPAPGYS
Ga0187810_100443153	3300018012	Freshwater Sediment	DPLGALQWHWGSAYVISHHGGSAWVAQRRDTRETLRAGTPLGLRDKIIADYTARPVSRDLPDQPGPWPG
Ga0187766_113871442	3300018058	Tropical Peatland	MGGNRDGPLGALRWHWGEAYAICHPEPDTWIAQRRDTRETLRAATPEGLRDKIIGDYAARPVS
Ga0187784_106125701	3300018062	Tropical Peatland	VRSDWDEPLDALRWHWGEAYVINCLGAARWIAERRDTHETLRADTPLGLRDKIIADYTARPVTRDLPGQPSSRGAVHN
Ga0187773_103515491	3300018064	Tropical Peatland	DQGALAGHAVNGDWSEPLSALRWHWGEAYVINCLGTGRWTAERRDTHETLRDQARLGLRDQIIADYAARKVSRSLPGQPG
Ga0187772_100043739	3300018085	Tropical Peatland	MGSDWDEPLRALRWHWGEAYVISHTEPDVWMAQRRDTCETLRDVTALGLRDQIIRDYAARSVKRG
Ga0187772_101981972	3300018085	Tropical Peatland	VTGDWSEPLSALRWHWGEAYVINCLGTGRWTAERRDTHEMLRDQTPLGLREQIIADYAARKVRRGLPGQPG
Ga0187772_106219713	3300018085	Tropical Peatland	VDIPLSDLRHHWGEAYSICHPEPDVWIAQRLDTRAMLRAVTPEGLRDAIIADYA
Ga0187772_106973752	3300018085	Tropical Peatland	VNSDWDEPLDALRWHWGSAYIINYLAAGQWIAERRDTHETLRADTPLGLRDKIIADYTARPVTRDLPGQPSSRGAVHN
Ga0187772_114264001	3300018085	Tropical Peatland	MLVQYYVQVMGSDRDESLDALRWHWGDAYAICHPAPDTWIAQRRDSREMLRAVTPEGLRDQIITDYTERPVSR
Ga0187769_102990682	3300018086	Tropical Peatland	MGSDWDEPLSALRWHWGEAYVISHPEPDVWMAQRRDTCETLRDVTALGLRDQIIRDYAARSVKRG
Ga0187769_108867402	3300018086	Tropical Peatland	VNGDWSEPLSALRWHWGEAYVINCLGTGRWTAERRDTHETLRDQTPLGLRDQIIADYTARKVSRNLPGQPG
Ga0187769_109970772	3300018086	Tropical Peatland	VNSDWDEPLDALRWHWGSAYIINCLAGGQWIAERRDTHETLRADTPLGLRDKIIADYTARPVTRDLPGQPSSRGAVHN
Ga0187770_107779732	3300018090	Tropical Peatland	VTGDWSEPLSALRWHWGEAYVINCLGTGRWTAERRHTHEMLRDQTPLGLRDQIIADYAARKVSRGLPGQPG
Ga0210395_101464104	3300020582	Soil	MGRDWDEPLIALRWHWGEAYLICHPEPDVWTAQRRDTHETLRDFTPAGLRDQIIRDYTARSVKRSRVVS
Ga0210401_115238012	3300020583	Soil	MDGDWDEPLDALRWHWGEAYIIGCHGLGRWTAERRDTHETVSDQTPLGLRDKIIADYSTRKVSRSLPGRTPAPGSS
Ga0210396_108358732	3300021180	Soil	MGRDWDEPLIALRWHWGEAYLICHPEPDVWTAQRRDTHETLRDFTPAGLRDQIIRDYT
Ga0210396_113791831	3300021180	Soil	MGSDRDEPLIALRWHWGEAYVICHPKPDLWMAQRRDNRETLRDFTPVGLRDQIIRDYTARSVKRGRVAS
Ga0210385_110199261	3300021402	Soil	MGSDWDEPLIALRWHWGEAYVICHPESDVWTAQRRDTHETLRDFTPVGLRDQIIRDYTARSVKRSRVVS
Ga0210397_102170752	3300021403	Soil	MGSDWDEPLIALRWHWGEAYVICHPEPDVWTAQRGDTRETLRDFTPAGLRDQIIRDYTARSVKRGEVAS
Ga0210387_101720532	3300021405	Soil	MGSHWDEPLIALRWHWGEAYVICHPEPDVWMAQRGDTRETLRDFTPVGLRDQIIRDYTARSVKRGEVAS
Ga0210386_115019411	3300021406	Soil	MGSDWDEPLIALRWHWGEAYVICHPEPDVWTAQRRDTHETLRDFTPVGLRDQIIR
Ga0210383_106311841	3300021407	Soil	VGSDWDEPLGGLKWHWGEAYIINCLGLGDWTAERRDTHEMLRDHTPVGLRERIIADYTARPVRRAAAPLAPHKHVDI
Ga0210383_115426792	3300021407	Soil	MGSHWDEPLIALRWHWGEAYVICHPEPDVWTAQRRDTRETLRDFTPVGLRDQIIRDYTARSVKRSRVVF
Ga0210394_113184992	3300021420	Soil	VHDDLDPEPGGSWDDPLSALRWHWGEAYLINCPRPGTWTAERRDNGEMLLDETPLGLRDKIIADYIARKVLRSVS
Ga0210394_115369071	3300021420	Soil	MGSDWDEPLIALRWHWGEAYVICHPEPDVWTAQRRDTHETLRDFTPVGLRDQIIRDYTARSVKRSRVVS
Ga0187846_104398731	3300021476	Biofilm	SDWDQPLDALRWHWGSAYIINCLAAGRWIAERRDTHETLRADTPLGLRDKIIADYTARPVSRDLPGQPSSRGAVRK
Ga0209648_103306722	3300026551	Grasslands Soil	VSGDWDEPLDALRWHWGSAYVINCLGLGKWTAERRDTHETLRDETPLGLREKIIADYASRRVPRSPSR
Ga0209166_104069642	3300027857	Surface Soil	VSSEWDDPLGALTWHWGSAYTICNPEAGVWLAVRRDDHATLRDETPLGLRDKIIRDYTARPVSRDLPAQPGPDSNVPR
Ga0209415_100581595	3300027905	Peatlands Soil	MGSEWDDPLGALQWHWGSAYIISCHGASLWIAQRRDTRETLRAETPLGLRDKIIADYTARPVSRDLPGQVHR
Ga0209415_100673827	3300027905	Peatlands Soil	VSSDWDDPLGALRWHWGSAYVISHHGGSAWVAQRRDTRETLRAETPLGLRDKIIADYTGRPVSRDLPAQPGPGSSVPR
Ga0209415_100891898	3300027905	Peatlands Soil	MGSDWDEPLSALRWHWGEAYIINCLALGNWTAERRDNHETLRDTTPLGLRDRIIADYTAR
Ga0209415_101620683	3300027905	Peatlands Soil	MCHTPYARRMGSDWDEPLEALRWHWGEAYVINCARLGSWTAERRDNHETLRADTPFGLRDKIIADYTARPVPRPAH
Ga0209415_101730412	3300027905	Peatlands Soil	MSSDWDEPLTALRWHWGEAYIINCLGPGDWLAERRDTHETLRDQTPLDLRERIIADYTARPVSRAVAPLVPRERPHL
Ga0209415_103086352	3300027905	Peatlands Soil	MSSDWDDPMSALQWHWGEAYIIANPRPGIWLAVRRDDHQTLRDGTPLGLRDLIIADYTARPVPRDLPGRACAE
Ga0209415_103608051	3300027905	Peatlands Soil	MGSDWDEPLSALRWHWGEAYTINCLALGNWTAERRDNHETLRDTTPLGLRDRIIADYTAR
Ga0209415_105662412	3300027905	Peatlands Soil	PLGALTWHWGSAYSICNPKAGVWLAIRRDDHTTLRDGTPLGLRDKIIADYTARPVSRDLPTQPGPGSAVSR
Ga0307312_101561271	3300028828	Soil	SALRWHWGEAYVINCLRTGRWTAERRDTHETLRDQTPLGLRDQIIADYAARKVSRSLPGQPG
Ga0308309_104360892	3300028906	Soil	MMDWNEPLAALRWHWGEAYIINCLGLGNWTAERRDTHETLRADTPLGLRDKIVADYTARKVSRSLPEV
Ga0310037_101386602	3300030494	Peatlands Soil	VTGDWSEPLSALRWHWGEAYVINCLGTGRWTAERRDTHQTLRDQTPLGLRDQIIADYAARKVSRSLPGQPG
Ga0265760_102371751	3300031090	Soil	MGSDWDEPLIALRWHWGEAYVICHPEPDVWTAQRRDTRETLRDFTPVGLRDQIIRDYTARSVKRGEVAS
Ga0318555_105441913	3300031640	Soil	VTGDWSEPLDALRWHWGEAYVINCLGLGRWIAERRDTHETLRDRTPLGLRDKIIADYSARKVPRRPNGQPP
Ga0310686_1004092861	3300031708	Soil	VSSTWDEPLDALRWHWGEAYVIGHPAPEAWTAERRDTRETLRDTTPLGLRDKIIADYIARPVPRPVS
Ga0310686_1017203523	3300031708	Soil	VNSDWDQPLDALRWHWGSAYIINCPGAGRWIAERRDTHETLRADTPLGLRDKIIADYTANPVRRDLPGQPADRGVVRK
Ga0310686_1177193132	3300031708	Soil	VSSDWDEPLDALRWHWGSAYIISCHGTGLWIAQRRDTRETLRGGTPLGLRDKIIANYTARPVSRDLPGQACAE
Ga0318568_109355291	3300031819	Soil	VTGDWSEPLDALRWHWGEAYVINCLGLGRWIAERRDTHETLRDRTPLGLRDKIIADYSARKVPRRPNGQPPSEP
Ga0318558_106908971	3300032044	Soil	LSALRWHWGQAYVINCPGTGRWTAERRDTHQMLRDRTPLGLREQIIADYAARKVSRNLPGNPDDPAPGRHRG
Ga0311301_101387603	3300032160	Peatlands Soil	MCHTPYARRMGSDWDEPLSALRWHWGEAYIINCLALGNWTAERRDNHETLRDTTPLGLRDRIIADYTARPVPRPGP
Ga0311301_103241816	3300032160	Peatlands Soil	VDDDWDEPLRALRWNWDEAYIISRPEPGVWVAERLDNHETLRDETPFGLREKIIADYAERPVRRDVEP
Ga0311301_107328553	3300032160	Peatlands Soil	MVTWDEPLDALKWHWGSAYSIHHPGPDVWLAQRRDTYETLRDETPAGLRNRIVADYSARPVSRDAAP
Ga0311301_112599642	3300032160	Peatlands Soil	MGSDWDEPLIALRWHWGEAYVICHPEPDVWTAQRQDTRETLRDFTPVGLRNQIIRDYTARSVKRSQVAS
Ga0335078_104744053	3300032805	Soil	VNGDWSQPLSALRWHWGEAYVINCLRTGRWTAERRDTHEMLRDQTPLGLRDQIIADYAARKVSRSLPGQPG
Ga0335074_110608521	3300032895	Soil	MGSDWDKPLDALRWHWGDAYVINCLGLGNWTAERRDNHETLHATTPVDLRDRIMADYTARPVSRGFSS
Ga0335072_105030663	3300032898	Soil	MGSDWDKPLDALRWHWGDAYVINCLGLGNWTAERRDNHETLHATTPVDLRDRIMADYTARPVSRGFSSGSKTQ
Ga0335073_110671183	3300033134	Soil	MGSDWDKPLDALRWHWGDAYVINCLGLGNWTAERRDNHETLHATTPVDLRDRIMADYTAR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F090655

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences