Metagenome Family F090709

Basic Information
Family ID	F090709
Family Type	Metagenome
Number of Sequences	108
Average Sequence Length	55 residues
Representative Sequence	TINRHAIDPSVTLPIDKLNWMQNELVKAGNLKAPFDLTTMTAPDIRAEAAKRATK
Number of Associated Samples	104
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	94.44 %
% of genes from short scaffolds (< 2000 bps)	79.63 %
Associated GOLD sequencing projects	99
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.44

Most Common Taxonomy
Group	Unclassified (65.741 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (10.185 % of family members)
Environment Ontology (ENVO)	Unclassified (27.778 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (42.593 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 33.73% β-sheet: 0.00% Coil/Unstructured: 66.27%
Feature Viewer

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Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF09084	NMT1	18.52
PF02955	GSH-S_ATP	14.81
PF01699	Na_Ca_ex	0.93
PF12729	4HB_MCP_1	0.93
PF00672	HAMP	0.93
PF01025	GrpE	0.93
PF01725	Ham1p_like	0.93
PF02021	UPF0102	0.93
PF02518	HATPase_c	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG0189	Glutathione synthase, LysX or RimK-type ligase, ATP-grasp superfamily	Translation, ribosomal structure and biogenesis [J]	29.63
COG0715	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	Inorganic ion transport and metabolism [P]	18.52
COG4521	ABC-type taurine transport system, periplasmic component	Inorganic ion transport and metabolism [P]	18.52
COG0127	Inosine/xanthosine triphosphate pyrophosphatase, all-alpha NTP-PPase family	Nucleotide transport and metabolism [F]	0.93
COG0387	Cation (Ca2+/Na+/K+)/H+ antiporter ChaA	Inorganic ion transport and metabolism [P]	0.93
COG0530	Ca2+/Na+ antiporter	Inorganic ion transport and metabolism [P]	0.93
COG0576	Molecular chaperone GrpE (heat shock protein HSP-70)	Posttranslational modification, protein turnover, chaperones [O]	0.93
COG0792	Predicted endonuclease distantly related to archaeal Holliday junction resolvase, YraN/UPF0102 family	Replication, recombination and repair [L]	0.93

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.74 %
All Organisms	root	All Organisms	34.26 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.74 %
cellular organisms	root	All Organisms → cellular organisms	34.26 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.74 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	34.26 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.74 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	26.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.74 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	26.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.74 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	19.44 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.74 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	7.41 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2.78 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	0.93 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.74 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	7.41 %
unclassified Bradyrhizobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae	1.85 %
Pseudolabrys	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys	0.93 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.93 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.74 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	5.56 %
Bradyrhizobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	1.85 %
unclassified Pseudolabrys	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys	0.93 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.93 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.74 %
Rhodoplanes sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp.	2.78 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	2.78 %
Bradyrhizobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	1.85 %
Pseudolabrys sp. Root1462	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	0.93 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.93 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908038\|B3_all_c_ConsensusfromContig177737	Not Available	606	Open in IMG/M
3300001139\|JGI10220J13317_10214232	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1340	Open in IMG/M
3300001978\|JGI24747J21853_1001550	All Organisms → cellular organisms → Bacteria	1743	Open in IMG/M
3300002067\|JGI24735J21928_10064017	Not Available	1056	Open in IMG/M
3300004479\|Ga0062595_100138859	All Organisms → cellular organisms → Bacteria	1387	Open in IMG/M
3300005146\|Ga0066817_1011300	All Organisms → cellular organisms → Bacteria	720	Open in IMG/M
3300005185\|Ga0066811_1006351	Not Available	776	Open in IMG/M
3300005218\|Ga0068996_10071845	Not Available	727	Open in IMG/M
3300005329\|Ga0070683_101365141	Not Available	681	Open in IMG/M
3300005331\|Ga0070670_100139995	All Organisms → cellular organisms → Bacteria	2092	Open in IMG/M
3300005353\|Ga0070669_100394640	Not Available	1131	Open in IMG/M
3300005355\|Ga0070671_100007879	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	8515	Open in IMG/M
3300005434\|Ga0070709_11486236	Not Available	550	Open in IMG/M
3300005458\|Ga0070681_10019520	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6786	Open in IMG/M
3300005535\|Ga0070684_101483254	Not Available	639	Open in IMG/M
3300005544\|Ga0070686_101733784	Not Available	531	Open in IMG/M
3300005545\|Ga0070695_101019990	Not Available	674	Open in IMG/M
3300005546\|Ga0070696_100609368	All Organisms → cellular organisms → Bacteria	881	Open in IMG/M
3300005617\|Ga0068859_102146752	Not Available	616	Open in IMG/M
3300005713\|Ga0066905_102302948	Not Available	504	Open in IMG/M
3300005719\|Ga0068861_100195824	All Organisms → cellular organisms → Bacteria	1693	Open in IMG/M
3300005842\|Ga0068858_100813853	Not Available	912	Open in IMG/M
3300006050\|Ga0075028_100015010	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3297	Open in IMG/M
3300006175\|Ga0070712_100449739	Not Available	1072	Open in IMG/M
3300006806\|Ga0079220_12123243	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	503	Open in IMG/M
3300006854\|Ga0075425_100115953	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3055	Open in IMG/M
3300006854\|Ga0075425_100142472	All Organisms → cellular organisms → Bacteria	2744	Open in IMG/M
3300007076\|Ga0075435_100328329	All Organisms → cellular organisms → Bacteria	1310	Open in IMG/M
3300009029\|Ga0066793_10192323	Not Available	1188	Open in IMG/M
3300009093\|Ga0105240_11324165	Not Available	759	Open in IMG/M
3300009162\|Ga0075423_11222498	Not Available	802	Open in IMG/M
3300009553\|Ga0105249_12714507	Not Available	567	Open in IMG/M
3300010046\|Ga0126384_10852289	Not Available	819	Open in IMG/M
3300010358\|Ga0126370_11778179	Not Available	596	Open in IMG/M
3300010359\|Ga0126376_12246155	Not Available	591	Open in IMG/M
3300010371\|Ga0134125_11198090	Not Available	830	Open in IMG/M
3300010403\|Ga0134123_11659118	Not Available	689	Open in IMG/M
3300012904\|Ga0157282_10003991	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp.	2263	Open in IMG/M
3300012914\|Ga0157297_10006853	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp.	2241	Open in IMG/M
3300012931\|Ga0153915_11137134	Not Available	911	Open in IMG/M
3300012957\|Ga0164303_10028548	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2258	Open in IMG/M
3300012960\|Ga0164301_10051088	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	2129	Open in IMG/M
3300012986\|Ga0164304_10568952	Not Available	840	Open in IMG/M
3300012988\|Ga0164306_10397550	Not Available	1035	Open in IMG/M
3300013100\|Ga0157373_10487104	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	890	Open in IMG/M
3300013306\|Ga0163162_11234425	Not Available	849	Open in IMG/M
3300014308\|Ga0075354_1012752	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	1248	Open in IMG/M
3300014488\|Ga0182001_10288806	Not Available	656	Open in IMG/M
3300014968\|Ga0157379_12366517	Not Available	530	Open in IMG/M
3300015197\|Ga0167638_1037544	Not Available	1090	Open in IMG/M
3300015201\|Ga0173478_10012449	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	2238	Open in IMG/M
3300015371\|Ga0132258_12330424	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1342	Open in IMG/M
3300015373\|Ga0132257_100390536	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1690	Open in IMG/M
3300015374\|Ga0132255_101587501	Not Available	991	Open in IMG/M
3300018032\|Ga0187788_10142839	Not Available	897	Open in IMG/M
3300018060\|Ga0187765_10027468	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2775	Open in IMG/M
3300018064\|Ga0187773_10947517	Not Available	560	Open in IMG/M
3300019362\|Ga0173479_10412833	Not Available	655	Open in IMG/M
3300021560\|Ga0126371_12099442	Not Available	681	Open in IMG/M
3300023071\|Ga0247752_1000630	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	4247	Open in IMG/M
3300023168\|Ga0247748_1009173	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp.	1288	Open in IMG/M
3300025916\|Ga0207663_10536335	Not Available	913	Open in IMG/M
3300025920\|Ga0207649_10724425	Not Available	773	Open in IMG/M
3300025925\|Ga0207650_11484959	Not Available	576	Open in IMG/M
3300025930\|Ga0207701_10348845	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1280	Open in IMG/M
3300025936\|Ga0207670_10017050	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	4382	Open in IMG/M
3300025939\|Ga0207665_10727315	Not Available	781	Open in IMG/M
3300025941\|Ga0207711_10370245	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1329	Open in IMG/M
3300025942\|Ga0207689_11528692	Not Available	557	Open in IMG/M
3300025944\|Ga0207661_11251222	Not Available	682	Open in IMG/M
3300025960\|Ga0207651_11067805	Not Available	723	Open in IMG/M
3300026035\|Ga0207703_10863641	Not Available	865	Open in IMG/M
3300026075\|Ga0207708_10232697	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1480	Open in IMG/M
3300026088\|Ga0207641_10548212	Not Available	1127	Open in IMG/M
3300026272\|Ga0209913_1018597	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1907	Open in IMG/M
3300026711\|Ga0207489_101452	Not Available	561	Open in IMG/M
3300026753\|Ga0207528_101011	Not Available	862	Open in IMG/M
3300026779\|Ga0207471_102062	Not Available	711	Open in IMG/M
3300026812\|Ga0207518_100246	Not Available	1184	Open in IMG/M
3300026830\|Ga0207861_114882	Not Available	501	Open in IMG/M
3300026912\|Ga0208520_1008317	Not Available	502	Open in IMG/M
3300026995\|Ga0208761_1037869	Not Available	501	Open in IMG/M
3300027011\|Ga0207740_1036479	Not Available	585	Open in IMG/M
3300027116\|Ga0207539_100555	Not Available	911	Open in IMG/M
3300027390\|Ga0207435_101177	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1299	Open in IMG/M
3300027425\|Ga0207522_100061	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1633	Open in IMG/M
3300027455\|Ga0207504_100363	Not Available	1223	Open in IMG/M
3300027645\|Ga0209117_1078494	Not Available	928	Open in IMG/M
3300027682\|Ga0209971_1038415	Not Available	1153	Open in IMG/M
3300027894\|Ga0209068_10726284	Not Available	583	Open in IMG/M
3300027900\|Ga0209253_10696684	Not Available	733	Open in IMG/M
3300028819\|Ga0307296_10000881	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	14724	Open in IMG/M
3300031198\|Ga0307500_10076368	Not Available	860	Open in IMG/M
3300031199\|Ga0307495_10001180	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2663	Open in IMG/M
3300031747\|Ga0318502_10125573	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1445	Open in IMG/M
3300032041\|Ga0318549_10159673	Not Available	1005	Open in IMG/M
3300032205\|Ga0307472_100960251	Not Available	797	Open in IMG/M
3300032770\|Ga0335085_10910256	Not Available	958	Open in IMG/M
3300032893\|Ga0335069_10450812	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	1501	Open in IMG/M
3300033433\|Ga0326726_11242469	Not Available	725	Open in IMG/M
3300033433\|Ga0326726_11492269	Not Available	658	Open in IMG/M
3300033810\|Ga0314872_025115	Not Available	550	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	72.22%
Host-Associated	Host-Associated	26.85%
Engineered	Engineered	0.93%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	67.59%
Plants	Host-Associated → Plants	26.85%
Aquatic	Environmental → Aquatic	4.63%
Modeled	Engineered → Modeled	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	65.74%
Rhizosphere	Host-Associated → Plants → Rhizosphere	14.81%
Rhizoplane	Host-Associated → Plants → Rhizoplane	12.04%
Freshwater	Environmental → Aquatic → Freshwater	1.85%
Sediment	Environmental → Aquatic → Sediment	1.85%
Peat	Environmental → Terrestrial → Peat	1.85%
Marine	Environmental → Aquatic → Marine	0.93%
Simulated Communities (Sequence Read Mixture)	Engineered → Modeled → Simulated Communities (Sequence Read Mixture)	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	40.74%
Loam	Environmental → Terrestrial → Soil → Loam	15.74%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	9.26%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	9.26%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	8.33%
Soil	Host-Associated → Plants → Rhizosphere → Soil	6.48%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.78%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.85%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.85%
Lentic	Environmental → Aquatic → Freshwater → Lentic	0.93%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.93%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.93%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	22.22%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	12.04%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	12.04%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	9.26%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	8.33%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	7.41%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	6.48%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.70%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.78%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.78%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.85%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	1.85%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.85%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.85%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.85%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.93%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.93%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.93%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	10.19%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	8.33%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.48%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	5.56%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.63%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.63%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	4.63%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	3.70%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	3.70%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.70%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.78%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.78%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.85%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.85%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.85%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.85%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.85%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	1.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.85%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	0.93%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.93%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.93%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.93%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.93%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.93%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.93%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.93%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.93%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.93%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.93%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.93%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.93%
Simulated	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified → Simulated	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908038	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Bog Site B3	Environmental	Open in IMG/M
2166559005	Simulated microbial communities from Lyon, France	Engineered	Open in IMG/M
3300001139	Soil microbial communities from Great Prairies - Wisconsin, Switchgrass soil	Environmental	Open in IMG/M
3300001978	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6	Host-Associated	Open in IMG/M
3300002067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005146	Soil and rhizosphere microbial communities from Laval, Canada - mgHAB	Environmental	Open in IMG/M
3300005185	Soil and rhizosphere microbial communities from Laval, Canada - mgHPB	Environmental	Open in IMG/M
3300005218	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqC_D2	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009029	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 1 DNA2013-189	Environmental	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012904	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S029-104C-1	Environmental	Open in IMG/M
3300012914	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S028-104C-2	Environmental	Open in IMG/M
3300012931	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014308	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleC_D1	Environmental	Open in IMG/M
3300014488	Bulk soil microbial communities from Mexico - San Felipe (SF) metaG	Environmental	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015197	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G6B, Proglacial plain, adjacent to northern proglacial tributary)	Environmental	Open in IMG/M
3300015201	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017947	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG	Environmental	Open in IMG/M
3300018032	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_BV01_MP10_20_MG	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300018064	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MG	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300023071	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S019-104C-5	Environmental	Open in IMG/M
3300023168	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S064-202C-5	Environmental	Open in IMG/M
3300025474	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-3 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026272	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil leachate replicate DNA2013-203 (SPAdes)	Environmental	Open in IMG/M
3300026711	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G09A2-10 (SPAdes)	Environmental	Open in IMG/M
3300026753	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06A4a-12 (SPAdes)	Environmental	Open in IMG/M
3300026779	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A2w-11 (SPAdes)	Environmental	Open in IMG/M
3300026812	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A3-10 (SPAdes)	Environmental	Open in IMG/M
3300026830	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 33 (SPAdes)	Environmental	Open in IMG/M
3300026912	Soil and rhizosphere microbial communities from Laval, Canada - mgHPB (SPAdes)	Environmental	Open in IMG/M
3300026995	Soil and rhizosphere microbial communities from Laval, Canada - mgLAB (SPAdes)	Environmental	Open in IMG/M
3300027011	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 29 (SPAdes)	Environmental	Open in IMG/M
3300027116	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01A4-11 (SPAdes)	Environmental	Open in IMG/M
3300027390	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A1-11 (SPAdes)	Environmental	Open in IMG/M
3300027425	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A2-10 (SPAdes)	Environmental	Open in IMG/M
3300027455	Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G06K3-12 (SPAdes)	Environmental	Open in IMG/M
3300027645	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes)	Environmental	Open in IMG/M
3300027682	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S AM (SPAdes)	Host-Associated	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300027900	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - BRP12 BR (SPAdes)	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300031198	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 14_S	Environmental	Open in IMG/M
3300031199	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 7_S	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300033810	Tropical peat soil microbial communities from peatlands in Loreto, Peru - SR_E	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
B3_all_c_02660060	2124908038	Soil	KHGLIDPEVNLPIDKLAWMQNELLKAGNLKEAIDLAKITAPDIRAEAAKRVAK
cont_0931.00000600	2166559005	Simulated	LPFDKLNWMQNELVRAGNMKAPIDLSKITDTEIRVEAMKRVTE
JGI10220J13317_102142323	3300001139	Soil	HAIDPSVTLPIDKLNWMQNELVKAGNLKAPFDLTTMTAPDIRAEAAKRATK*
JGI24747J21853_10015503	3300001978	Corn, Switchgrass And Miscanthus Rhizosphere	INRHAIDPSVTLPIDKLNWMQNELVKAGNLKAPFDLTTMTAPDIRAEAAKRATK*
JGI24735J21928_100640172	3300002067	Corn Rhizosphere	AIDPSVTLPIDKLNWMQNELVKAGNLKAPFDLTTMTAPDIRAEAAKRATK*
Ga0062595_1001388593	3300004479	Soil	TVKQRAIDPSVALPLDKLKWMQNELVKAGNLKTPIDLMKITDAEIRAEAMKRTGR*
Ga0066817_10113001	3300005146	Soil	PAYAFDDTIRQKAIDPEASLPLDKLNWLQSELVRAGNMKAPIDLGKIVDAEIRTEAMKRTAK*
Ga0066811_10063511	3300005185	Soil	DTLKQHAIDPDVTLPLDKLSWMQNELVKAGNLKAPIDLANIVDASIRGEAIKRAAK*
Ga0068996_100718452	3300005218	Natural And Restored Wetlands	SVTLPIDKLNWMQNELVRAGNLKAPFDLTTMTAPDIRAEAAKRVTR*
Ga0070683_1013651411	3300005329	Corn Rhizosphere	DTINRHAVDPSVALPIDKLNWMQSELVKAGNLKAPFDLAMMTAPDIRAEAAKRAVR*
Ga0070670_1001399951	3300005331	Switchgrass Rhizosphere	IDPSVTLPIDKLNWMQNELVKAGNLKAPFDLTTMTAPDIRAEAAKRAAK*
Ga0070669_1003946402	3300005353	Switchgrass Rhizosphere	DDAINRHAIDPSVTLPIDKLNWMRNELVRAGNLKAPFDLTTMTAPDIRAEAAKRVTR*
Ga0070671_1000078791	3300005355	Switchgrass Rhizosphere	DPSVTLPLDKLNWMQNELVKAGNLKTPIDLSKITDAGIRAEAVKRTRN*
Ga0070709_114862362	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	ATLPLDKLNWLQNELVRAGNLRAPIDLAKIVDTEIRAEAMKRTGK*
Ga0070681_100195209	3300005458	Corn Rhizosphere	HLVDPEVSLPLDKLQWMQNQLVELGDLKKPIDIAKLTAPDARAEAMKLAGAK*
Ga0070684_1014832542	3300005535	Corn Rhizosphere	DDTINRHAVDPSVALPIDKLNWMQSELVKAGNLKAPFDLAMMTAPDIRAEAAKRAVR*
Ga0070686_1017337842	3300005544	Switchgrass Rhizosphere	INHHAIDPSVTLPIDKLNWMQNELVKAGNLKAPFDLTTMTAPDIRAEAAKRAAK*
Ga0070695_1010199901	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	AYAFDDAINRHAIDPSATLPIDKLNWMQSELVKAGNLKAPFDLTTMTAPDIRAEAAKRAAR*
Ga0070696_1006093681	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	DPRPAYAFDDTINRHAVDPSVILPIDKLNWMQSELVKAGNLKAPFDLTTMTAPDIRAEAAKRAVR*
Ga0068859_1021467522	3300005617	Switchgrass Rhizosphere	INRHAIDPSVTLPIDKLNWMQNELVKAGNLKAPFDLTTMTAPDIRAEAAKRATN*
Ga0066905_1023029482	3300005713	Tropical Forest Soil	AYAFDDTINRHAIDPSVMLPIDKLNWMQNELVKAGNLKASFDLTTMTAPDIRAEAAKRVAK*
Ga0068861_1001958243	3300005719	Switchgrass Rhizosphere	PSVTLPIDKLNWMQNELVKAGNLKAPFDLTTMTAPDIRAEAAKRATN*
Ga0068858_1008138532	3300005842	Switchgrass Rhizosphere	AFDDTINRHAIDPSVTLPIDKLNWMQNELVKAGNLKAPFDLTTMTAPDIRAEAAKRATN*
Ga0075028_1000150104	3300006050	Watersheds	RPAYAFDDTLKQRAIDPSVMLPLDKLNWMQDELVKAGNLKAPIDLGKITDIGIRAEAAKRTVK*
Ga0070712_1004497392	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	IDPSVTLPLDKLNWMQNELVKAGNLKTPIDLSKITDAGIRAEAAKRTRN*
Ga0079220_102080652	3300006806	Agricultural Soil	LPLDKLNWLQSELVKAGNLKKTFDLTTITAPDIRVEAAKRAMK*
Ga0079220_121232431	3300006806	Agricultural Soil	PAYAFDDTIKRRAIDPSVTLPIDKLNWMQNELVKAGNLKAPIDLTTMTTPEIRAEAAKRATR*
Ga0075425_1001159534	3300006854	Populus Rhizosphere	PRPAYAFDDTIRQKAIDPEASLPLDKLNWLQSELVRAGNMKAPIDLGKIVDAEIRTEAMKRTAK*
Ga0075425_1001424721	3300006854	Populus Rhizosphere	TLPIDKLNWMQNELVKAGNLKAPIDLSAMTAPDIRSEAIKHVAK*
Ga0075435_1003283293	3300007076	Populus Rhizosphere	IDPSVTLPIDKLNWMQNELVKAGNLKAPFDLTTMTAPDIRAEAAKRATK*
Ga0066793_101923231	3300009029	Prmafrost Soil	AYAFDDTVKRHAVDPAVALPLDKLNWMQSELVKAGNLKAPIDLGLITDVDIRAKAAARAGK*
Ga0105240_113241652	3300009093	Corn Rhizosphere	AFDDAINRHAIDPSVTLPIDKLNWMQNELVKAGNLKAPFDLTTMTAPDIRAEAAKRATN*
Ga0075423_112224981	3300009162	Populus Rhizosphere	TEATLPLDKLNWLQNELVRAGNLRAPIDLAKIVDTEIRAEAMKRTGK*
Ga0105249_127145072	3300009553	Switchgrass Rhizosphere	PRPAYAFDDTVKRGSIDPSVTLPLDKLNWMQNELVKAGNLKTPIDLSKITDAGIRAEAVKRTRN*
Ga0126384_108522892	3300010046	Tropical Forest Soil	DDTIKQHAVDPSVSLPLDKLNWMQNELVKAGNLKTAIDLAKITDPEIRAEATKRAKN*
Ga0126370_117781792	3300010358	Tropical Forest Soil	DTIRQKAIDPEATLPLDKLNWLQSELVRAGNMKAPIDLGKIVDAEIRVEAMKRTAR*
Ga0126376_122461551	3300010359	Tropical Forest Soil	DTIRQKAIDPEATLPLDKLNWLQNELVRAGNLKTPIDLGKIVDTEIRAEAMKRTGK*
Ga0126378_119477591	3300010361	Tropical Forest Soil	TLPLDKLSWLQNELVKAGNLKAPIDLAKIAAPDIRAEALKLSDK*
Ga0134125_111980902	3300010371	Terrestrial Soil	SAISQGTINHHAIDPSVTLPIDKLNWMQNELVKAGNLKAPFDLTTMTAPDIRAEAAKRAAK*
Ga0134123_116591181	3300010403	Terrestrial Soil	FDDTVKRGSIDPSVTLPLDKLNWMQNELVKAGNLKTPIDLSKITDAGIRAEAVKRTRN*
Ga0157282_100039911	3300012904	Soil	FDDAINRHAIDPSVTLPIDKLNWMQNELVKAGNLKAPFDLTTMTAPDIRAEAAKRATN*
Ga0157297_100068531	3300012914	Soil	NRHAIDPSVTLPIDKLNWMQNELVKAGNLKAPFDLTTMTAPDIRAEAAKRATK*
Ga0153915_111371341	3300012931	Freshwater Wetlands	DTVKHGAVDPAVPLPMYKLSWMQDELVKAGNLKTPIDLAKITEAGIRAEAEKRVAK*
Ga0164303_100285483	3300012957	Soil	AYAFDDTIRQKAIDTEATLPLDKLNWLQNELVRAGNLRAPIDLAKIVDTEIRAEAMKRTGK*
Ga0164301_100510883	3300012960	Soil	DAINRHAIDPSVTLPIDKLNWMQNELVKAGNLKAPFDLTTMTAPDIRAEAAKRATN*
Ga0164304_105689521	3300012986	Soil	KRRSIDPSAALPLDKLRWMQNELVKAGNLKTPIDLSKITDAGIRAEAAKRTRN*
Ga0164306_103975501	3300012988	Soil	PAYAFDDTVKRGSIDPSVTLPLDKLNWMQNELVKAGNLKTPIDLSKITDAGIRAEAVKRTRN*
Ga0157373_104871042	3300013100	Corn Rhizosphere	HKAIDPGVALPLDKLQWMQGELVKAGNLKAPIDLAKVTDPAIRDDAAKRAGK*
Ga0163162_112344252	3300013306	Switchgrass Rhizosphere	DDTVKRRSIDPSVALPLDKLNWMQNELVKAGNLKTPIDLSKITDAGIRAEAVKRTRN*
Ga0075354_10127523	3300014308	Natural And Restored Wetlands	DPSVTLPIDKLNWMQNELVRAGNLKAPFDLTTMTAPDIRAEAAKRVTR*
Ga0182001_102888062	3300014488	Soil	AYAYDDTVKRKLVDPDVTLPLDKLAWMQNELRKAGNLKAPVDLAKITAPDIRDAAAKLAGK*
Ga0157379_123665171	3300014968	Switchgrass Rhizosphere	AFDDTVKRRSIDPSVALPLDKLSWMQNELVKAGNLKTPIDLSKITDAGIRAEAAKRTRN*
Ga0167638_10375441	3300015197	Glacier Forefield Soil	AYTYDDTVKHGLIDPEVNLPIDKLAWMQNELLKAGNLKEAIDLAKITAPDIRAEAAKRVAK*
Ga0173478_100124491	3300015201	Soil	RHAIDPSVTLPIDKLNWMQNELVKAGNLKAPFDLTTMTAPDIRAEAAKRATN*
Ga0132258_123304243	3300015371	Arabidopsis Rhizosphere	AFDDTIRQKAIDTEATLPLDKLNWLQNELVRAGNLRAPIDLAKIVDTEIRAEAMKRTGK*
Ga0132257_1003905361	3300015373	Arabidopsis Rhizosphere	DPSVTLPIDKLNWMQNELVKAGNLKAPFDLTTMTAPDIRAEAAKRATK*
Ga0132255_1015875012	3300015374	Arabidopsis Rhizosphere	DDTINRHAIDPSVTLPIDKLNWMQNELVKAGNLKAPFDLTTMTAPDIRAEAAKRATK*
Ga0187785_106258632	3300017947	Tropical Peatland	LPLDKLNWMQNELVKAGNLKAPVDLSKIADPEIRAQAAKRTGR
Ga0187788_101428392	3300018032	Tropical Peatland	YAFDDTVKQHAIDPSVVLPLDKLNWMQSELVKAGNLKAPIDLMKITDVEIRAEAMKRTGK
Ga0187765_100274684	3300018060	Tropical Peatland	ATLPLDKLNWLQSELVRAGNMKAPIDLGKLVDPEIRTEAMKRTAK
Ga0187773_109475171	3300018064	Tropical Peatland	TLRQGLIDPAIRLPLDKLNWMQGELAKAGNLKTSIDLGKITDSDIRAEAAKRTEK
Ga0173479_104128331	3300019362	Soil	TIRQKAIDPEASLPLDKLNWLQSELVRAGNMKAPIDLGKIVDAEIRTEAMKRTAK
Ga0126371_120994421	3300021560	Tropical Forest Soil	DTIRQHAVDPAVTLPLDKLNWMQNELVKAGNLKMPIDLTKITDTEIRAEATKRAKN
Ga0247752_10006305	3300023071	Soil	DARPAYAFDDAINRHAIDPSVTLPIDKLNWMQNELVKAGNLKAPFDLTTMTAPDIRAEAAKRATN
Ga0247748_10091731	3300023168	Soil	AFDDTINRHAIDPSVTLPIDKLNWMQNELVKAGNLKAPFDLTTMTAPDIRAEAAKRATK
Ga0208479_10095541	3300025474	Arctic Peat Soil	LPIEKLAWMQNELLKAGNLKEAIDLAKITAPDIRAEAAKRVAK
Ga0207663_105363351	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	VKRGDIDPSVTLPLDKLNWMQNELVKAGNLKTPIDLSKITDAGIRAEAAKRTRN
Ga0207649_107244251	3300025920	Corn Rhizosphere	FDDTVKRGSIDPSVTLPLDKLNWMQNELVKAGNLKTPIDLSKITDAGIRAEAVKRTRN
Ga0207650_100886504	3300025925	Switchgrass Rhizosphere	VTLPIDKLNWMQNELVKAGNLKAPFDLTTMTAPDIRAEAAKRAAK
Ga0207650_114849592	3300025925	Switchgrass Rhizosphere	DPEASLPLDKLNWLQSELVRAGNMKAPIDLGKIVDAEIRTEAMKRTAK
Ga0207701_103488453	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	HAIDPSVTLPIDKLNWMRNELVRAGNLKAPFDLTTMTAPDIRAEAAKRVTR
Ga0207670_100170501	3300025936	Switchgrass Rhizosphere	AYAFDDAINRHAIDPSVTLPIDKLNWMQNELVKAGNLKAPFDLTTMTAPDIRAEAAKRAT
Ga0207665_107273152	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	AYAYDDTLKQGAIDPAIKLPLDKLNWMQGELAKAGNLKTPVDLGKITDIDIRAEALKRAD
Ga0207711_103702451	3300025941	Switchgrass Rhizosphere	DAINRHAIDPSVTLPIDKLNWMQNELVKAGNLKAPFDLTTMTAPDIRAEAAKRATN
Ga0207689_115286922	3300025942	Miscanthus Rhizosphere	YAFDDAINRHAIDPSVTLPIDKLNWMQNELVKAGNLKAPFDLTTMTAPDIRAEAAKRATN
Ga0207661_112512221	3300025944	Corn Rhizosphere	DTINRHAVDPSVALPIDKLNWMQSELVKAGNLKAPFDLAMMTAPDIRAEAAKRAVR
Ga0207651_110678052	3300025960	Switchgrass Rhizosphere	AYAFDDTVKRRAIDPSVTLPLDKLNWMQNELVKAGNLKTPIDLSKITDAGIRAEAAKRTR
Ga0207703_108636411	3300026035	Switchgrass Rhizosphere	PSVTLPIDKLNWMQNELVKAGNLKAPFDLTTMTAPDIRAEAAKRATN
Ga0207708_102326971	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	YAFDDAINRHAIDPSVTLPIDKLNWMQNELVKAGNLKAPFDLMTMTAPDIRAEAAKRATN
Ga0207641_105482121	3300026088	Switchgrass Rhizosphere	HAIDPSVTLPIDKLNWMQNELVKAGNLKAPFDLTTMTAPDIRAEAAKRAAK
Ga0209913_10185973	3300026272	Soil	YAFDDTVKRHAVDPAVALPLDKLNWMQSELVKAGNLKAPIDLHLITDADIRAKAAERAGK
Ga0207489_1014521	3300026711	Soil	HAKPDDARPAYAFDDAINRHAIDPSVTLPIDKLNWMQNELVKAGNLKAPFDLTTMTAPDIRAEAAKRATK
Ga0207528_1010111	3300026753	Soil	SVTLPIDKLNWMQNELVKAGNLKAPFDLTTMTAPDIRAEAAKRATK
Ga0207471_1020622	3300026779	Soil	IDPSVTLPIDKLNWMQNELVKAGNLKAPFDLTTMTAPDIRAEAAKRATK
Ga0207518_1002462	3300026812	Soil	NRHAIDPSVTLPIDKLNWMQNELVKAGNLKAPFDLTTMTAPDIRAEAAKRATK
Ga0207861_1148821	3300026830	Tropical Forest Soil	DTVKRGLVDATVPLPLGKLNWMQEELVKAGNLKTPVDLSKIVDAGIRVEAAKRLGN
Ga0208520_10083171	3300026912	Soil	DTLKQHAIDPDVTLPLDKLSWMQNELVKAGNLKAPIDLANIVDASIRGEAIKRAAK
Ga0208761_10378692	3300026995	Soil	DPRPAYAFDDTIRQKAIDPEASLPLDKLNWLQSELVRAGNMKAPIDLGKIVDAEIRTEAMKRTAK
Ga0207740_10364791	3300027011	Tropical Forest Soil	PAYAFDDSVKNGEIDPAVSLPFDKLNWMQGELVKAGNLKAPIDLAKIIDASIRAEAERRVGK
Ga0207539_1005551	3300027116	Soil	AIDPSVTLPIDKLNWMQNELVKAGNLKAPFDLTTMTAPDIRAEAAKRATK
Ga0207435_1011773	3300027390	Soil	TINRHAIDPSVTLPIDKLNWMQNELVKAGNLKAPFDLTTMTAPDIRAEAAKRATK
Ga0207522_1000613	3300027425	Soil	DPSVTLPIDKLNWMQNELVKAGNLKAPFDLTTMTAPDIRAEAAKRATN
Ga0207504_1003632	3300027455	Soil	PAYAFDDTINRHAIDPSVTLPIDKLNWMQNELVKAGNLKAPFDLTTMTAPDIRAEAAKRATK
Ga0209117_10784941	3300027645	Forest Soil	RPAYAYDDTVKRHAIDPAVSLPLDKLNWMQGELVKAGNLKEPVDLAKMTAPDILAEAVKRAGK
Ga0209971_10384152	3300027682	Arabidopsis Thaliana Rhizosphere	TINRHAVDPSVMLPIDKLNWMQNELVKAGNLKAPFDLTTMTAPDIRAEAAKRATK
Ga0209068_107262841	3300027894	Watersheds	LKQRAIDPLVTLPLDKLNWMQDELVKAGNLKAPIDLGKITDTDIRAEAAMRAAK
Ga0209253_106966841	3300027900	Freshwater Lake Sediment	TVKHGMVDPTVPLPMYKLNWMQDELVKAGNLKTPIDLAKITDAGIRAEAEKRVAK
Ga0307296_1000088117	3300028819	Soil	AKPGDPHPAYAFDDTIRQKAIDPQATLPFDKLNWMQNELVRAGNMKAPIDLSKITDTEIRIEAMKRVTE
Ga0307500_100763681	3300031198	Soil	PSVTLPLDKLNWMQNELVKAGNLKTPIDLSKITDAGIRAEAAKRTRN
Ga0307495_100011804	3300031199	Soil	RPAYAFDDTVKQQSVDPSVALPLDKLSWMQNELVKAGNLKTPIDLAKITDVEIRAEAAKRTRN
Ga0318502_101255733	3300031747	Soil	AYAFDDTIRQKAIDPEATVPLDKLNWLQNELVRAGNMKAPIDLGKIVDTEIRAEAMKRTG
Ga0318549_101596731	3300032041	Soil	TVPLDKLNWLQNELVRAGNMKAPIDLGKIVDTEIRAEAMKRTGK
Ga0307472_1009602512	3300032205	Hardwood Forest Soil	YAFDDTINRHAIDPSLALPIDKLNWMQNELVKAGNLKASFDLTTMTAPDIRAEAAKRAAK
Ga0335085_109102561	3300032770	Soil	FAYDDTLMHKAIDADVTLPLDKLNWMQNELVKSGNLKAPIDLAKITDAGVREEALKRAGK
Ga0335069_104508121	3300032893	Soil	PSVTLPLDKLNWMQTELVKSGNLKAPIDLGKITDLSIRGEALKRAAQ
Ga0326726_112424691	3300033433	Peat Soil	TIKHGLVDPTVPLPMYKLNWMQDELVKAGNLKTPIDLAKITEPSIRAEAEKRLTK
Ga0326726_114922692	3300033433	Peat Soil	DPEATLPLDKLGWMQNQLVKAGNLKAPIDLAKITAPDIRAEAVKLSAK
Ga0314872_025115_2_190	3300033810	Peatland	RPAYAFDDTLKQQAIDPEVALPLDKLNWLQNELVKAGNLKAPVDLGKITAPDIRAEALRLAK

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.44
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.44
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F090709

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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